Cp4.1LG06g02660 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g02660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transmembrane protein, putative
Location	Cp4.1LG06 : 1391327 .. 1391686 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTCGGGATCGGGGCTACGTCGAGGAGGAGCCGGTTTTCTTCGTACGACCGGTGGGTGGCGGTAGGACTTGGGATTCTTGCAGTGGTTTCGCCGCTGTATATCGACCGGAGACCGAGCTTTGATGCGGAGGAGGAGGAGGAATCATCCATGAATCTTGGGTTCTGGTTGCCTGCTCTTCTCATAACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGCGCCAGATTTGATGCTTATTGGATTCACAGAGTAGGTGGCTCGTCCTGTGGCATATTCATCGTTCTTCTGCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGACCCTTGA

mRNA sequence

ATGGAGGTCGGGATCGGGGCTACGTCGAGGAGGAGCCGGTTTTCTTCGTACGACCGGTGGGTGGCGGTAGGACTTGGGATTCTTGCAGTGGTTTCGCCGCTGTATATCGACCGGAGACCGAGCTTTGATGCGGAGGAGGAGGAGGAATCATCCATGAATCTTGGGTTCTGGTTGCCTGCTCTTCTCATAACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGCGCCAGATTTGATGCTTATTGGATTCACAGAGTAGGTGGCTCGTCCTGTGGCATATTCATCGTTCTTCTGCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGACCCTTGA

Coding sequence (CDS)

ATGGAGGTCGGGATCGGGGCTACGTCGAGGAGGAGCCGGTTTTCTTCGTACGACCGGTGGGTGGCGGTAGGACTTGGGATTCTTGCAGTGGTTTCGCCGCTGTATATCGACCGGAGACCGAGCTTTGATGCGGAGGAGGAGGAGGAATCATCCATGAATCTTGGGTTCTGGTTGCCTGCTCTTCTCATAACCTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGCGCCAGATTTGATGCTTATTGGATTCACAGAGTAGGTGGCTCGTCCTGTGGCATATTCATCGTTCTTCTGCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGACCCTTGA

Protein sequence

MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP

Homology

[Close]

BLAST of Cp4.1LG06g02660 vs. TrEMBL
Match: A0A0A0L2W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648010 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-53
Identity = 103/118 (87.29%), Postives = 112/118 (94.92%), Query Frame = 1


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]

BLAST of Cp4.1LG06g02660 vs. TrEMBL
Match: F6H2S6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01940 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.9e-27
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 6   GATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLITL 65
           GAT R +RFSSY+R  A+GL +LAVVSPLYIDRRP  D E + +  ++L  WLP LL+ L
Sbjct: 4   GATYRSARFSSYERLGAIGLALLAVVSPLYIDRRPVLDPELDVQP-ISLVSWLPLLLMVL 63

Query: 66  IFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASL 115
           IF I    +L++R +RFD YWIHRVGGSS GI ++L++LA VLKCKAS+
Sbjct: 64  IFAITLSQYLDRRFSRFDPYWIHRVGGSSVGIIVILMVLALVLKCKASI 111

[Close]

BLAST of Cp4.1LG06g02660 vs. TrEMBL
Match: B9RQX2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 63/105 (60.00%), Postives = 81/105 (77.14%), Query Frame = 1


Query: 9   SRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLITLIFI 68
           +R  R SSY+++V +GLG+LAVVSPLYI+RRP+ D E EE+  ++L  WLP LL+ LI  
Sbjct: 77  TRSRRISSYEKFVGLGLGLLAVVSPLYINRRPNSDLELEEQP-IDLSSWLPLLLLLLILA 136

Query: 69  IAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKAS 114
           IA  L+L+Q   RFD YWIHRVGGSS GI ++L++LA VLKCKAS
Sbjct: 137 IALSLYLDQSLTRFDPYWIHRVGGSSGGIIVILVILALVLKCKAS 180

[Close]

BLAST of Cp4.1LG06g02660 vs. TrEMBL
Match: I1MX79_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G225900 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-25
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 5   IGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLIT 64
           +G +SR+SRFSSY+R  A+ L +LAV SPLYID RP  + E+EE+S ++  FWLP LL  
Sbjct: 3   LGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQS-LSFAFWLPLLLFV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASL 115
           LI  IA    L++   RFD +WIHRVGGSS GI ++L++L  VLKCKAS+
Sbjct: 63  LIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKASV 111

[Close]

BLAST of Cp4.1LG06g02660 vs. TrEMBL
Match: A0A0B2RVF8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009088 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-25
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 5   IGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLIT 64
           +G +SR+SRFSSY+R  A+ L +LAV SPLYID RP  + E+EE+S ++  FWLP LL  
Sbjct: 3   LGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQS-LSFAFWLPLLLFV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASL 115
           LI  IA    L++   RFD +WIHRVGGSS GI ++L++L  VLKCKAS+
Sbjct: 63  LIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKASV 111

[Close]

BLAST of Cp4.1LG06g02660 vs. TAIR10
Match: AT5G21910.1 (AT5G21910.1 unknown protein)

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-19
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           ME G  ++    RF++  + +A+ L +LAV+SPLYIDR    D EEEEE   +  F    
Sbjct: 1   METG-SSSPMMGRFTTSRKLLAISLSVLAVLSPLYIDRLSEEDLEEEEEL-FSFMFSFSL 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKAS 114
           LL+ LI  IA  L+ +    RFD YWIHR+ GS  G+ ++L+LL FVL CKAS
Sbjct: 61  LLLLLILAIALSLYSDPSLTRFDPYWIHRLCGSFGGLLVILILLVFVLICKAS 111

[Close]

BLAST of Cp4.1LG06g02660 vs. NCBI nr
Match: gi|659104041|ref|XP_008452787.1| (PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo])

HSP 1 Score: 218.4 bits (555), Expect = 6.8e-54
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 1


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LLI LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]

BLAST of Cp4.1LG06g02660 vs. NCBI nr
Match: gi|778696747|ref|XP_011654202.1| (PREDICTED: uncharacterized protein LOC105435317 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-53
Identity = 103/118 (87.29%), Postives = 112/118 (94.92%), Query Frame = 1


Query: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118

[Close]

BLAST of Cp4.1LG06g02660 vs. NCBI nr
Match: gi|658003814|ref|XP_008336998.1| (PREDICTED: uncharacterized protein LOC103400088 [Malus domestica])

HSP 1 Score: 136.7 bits (343), Expect = 2.6e-29
Identity = 66/114 (57.89%), Postives = 86/114 (75.44%), Query Frame = 1


Query: 5   IGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLIT 64
           +GAT R SRFSSY++ VA+GL +LAV+SPLYIDRR + D+E + E  ++   WLP LL+ 
Sbjct: 3   LGATWRTSRFSSYEKLVAIGLALLAVLSPLYIDRRTTDDSELDSEEPISFASWLPLLLLV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           LI  IA  L L++  +RFD YWIHRVGGSS GI I+L++LA VLKCK+S+  WD
Sbjct: 63  LILAIALSLFLDRSFSRFDPYWIHRVGGSSSGITIILMVLALVLKCKSSIRNWD 116

[Close]

BLAST of Cp4.1LG06g02660 vs. NCBI nr
Match: gi|694412749|ref|XP_009334677.1| (PREDICTED: uncharacterized protein LOC103927476 [Pyrus x bretschneideri])

HSP 1 Score: 132.5 bits (332), Expect = 4.9e-28
Identity = 63/115 (54.78%), Postives = 86/115 (74.78%), Query Frame = 1


Query: 5   IGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLIT 64
           +GAT R SRF S ++ VA+GL +LAV+SPLYIDRR + D+E + +  +N   WLP LL+ 
Sbjct: 3   LGATRRTSRFPSCNKLVAIGLSLLAVLSPLYIDRRTTDDSELDPDDPINFASWLPLLLLV 62

Query: 65  LIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWDP 120
           LI  IA  L++++  +RFD YWIHRVGGSSCGI I+L++LA VLKCK+S+   +P
Sbjct: 63  LILAIALSLYIDRSFSRFDPYWIHRVGGSSCGITIILMVLALVLKCKSSIRNREP 117

[Close]

BLAST of Cp4.1LG06g02660 vs. NCBI nr
Match: gi|764607604|ref|XP_011467224.1| (PREDICTED: uncharacterized protein LOC101299882 [Fragaria vesca subsp. vesca])

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-27
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = 1


Query: 6   GATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPALLITL 65
           GAT R SRFSSY+R VA+GL +LAV+SPLYID+    D+E E +  +N   WLP LL+ L
Sbjct: 4   GATRRTSRFSSYERLVAIGLALLAVLSPLYIDQTTGDDSELELQEPINFAAWLPLLLVVL 63

Query: 66  IFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 119
           I  I   L+L++   RFD YWI+RVGGSS GI + LL+LA VLKCKAS   W+
Sbjct: 64  ILAITFSLYLDRSFTRFDPYWIYRVGGSSSGIIVTLLVLALVLKCKASAWNWE 116

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g02660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g02660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2W6_CUCSA	1.1e-53	87.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648010 PE=4 SV=1	[more]
F6H2S6_VITVI	4.9e-27	59.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01940 PE=4 SV=...	[more]
B9RQX2_RICCO	1.4e-26	60.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1	[more]
I1MX79_SOYBN	2.7e-25	55.45	Uncharacterized protein OS=Glycine max GN=GLYMA_17G225900 PE=4 SV=1	[more]
A0A0B2RVF8_GLYSO	2.7e-25	55.45	Uncharacterized protein OS=Glycine soja GN=glysoja_009088 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g02660 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21910.1	2.6e-19	46.02	unknown protein	[more]

BLAST of Cp4.1LG06g02660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104041\|ref\|XP_008452787.1\|	6.8e-54	88.14	PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo]	[more]
gi\|778696747\|ref\|XP_011654202.1\|	1.5e-53	87.29	PREDICTED: uncharacterized protein LOC105435317 [Cucumis sativus]	[more]
gi\|658003814\|ref\|XP_008336998.1\|	2.6e-29	57.89	PREDICTED: uncharacterized protein LOC103400088 [Malus domestica]	[more]
gi\|694412749\|ref\|XP_009334677.1\|	4.9e-28	54.78	PREDICTED: uncharacterized protein LOC103927476 [Pyrus x bretschneideri]	[more]
gi\|764607604\|ref\|XP_011467224.1\|	2.4e-27	56.64	PREDICTED: uncharacterized protein LOC101299882 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g02660.1	Cp4.1LG06g02660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	FAMILY NOT NAMED	coord: 5..118 score: 3.2
None	No IPR available	PANTHER	PTHR35758:SF2	SUBFAMILY NOT NAMED	coord: 5..118 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g02660	Cucsa.271060	Cucumber (Gy14) v1	cgycpeB0711
Cp4.1LG06g02660	CmaCh09G003650	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g02660	CmoCh09G003640	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g02660	Cla007453	Watermelon (97103) v1	cpewmB766
Cp4.1LG06g02660	Csa4G648010	Cucumber (Chinese Long) v2	cpecuB782
Cp4.1LG06g02660	MELO3C016914	Melon (DHL92) v3.5.1	cpemeB734
Cp4.1LG06g02660	ClCG05G015760	Watermelon (Charleston Gray)	cpewcgB701
Cp4.1LG06g02660	CSPI04G25750	Wild cucumber (PI 183967)	cpecpiB784
Cp4.1LG06g02660	Lsi04G013860	Bottle gourd (USVL1VR-Ls)	cpelsiB638
Cp4.1LG06g02660	MELO3C016914.2	Melon (DHL92) v3.6.1	cpemedB867
Cp4.1LG06g02660	CsaV3_4G036060	Cucumber (Chinese Long) v3	cpecucB0969
Cp4.1LG06g02660	Bhi09G002532	Wax gourd	cpewgoB0997

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g02660	Wax gourd	cpewgoB1003
Cp4.1LG06g02660	Cucurbita pepo (Zucchini)	cpecpeB459
Cp4.1LG06g02660	Cucurbita maxima (Rimu)	cmacpeB507
Cp4.1LG06g02660	Cucumber (Gy14) v2	cgybcpeB562
Cp4.1LG06g02660	Melon (DHL92) v3.6.1	cpemedB850
Cp4.1LG06g02660	Silver-seed gourd	carcpeB0142
Cp4.1LG06g02660	Silver-seed gourd	carcpeB0906
Cp4.1LG06g02660	Silver-seed gourd	carcpeB1083
Cp4.1LG06g02660	Cucumber (Chinese Long) v3	cpecucB0994