Cucsa.250990 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.250990
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLOB domain-containing protein, putative
Locationscaffold02229 : 151666 .. 152331 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGATTTCTGGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGCCCTTCCGATTGTATTTTTTCCCCTTTCTTTCCTTCCAATAATCCTCAAAGATTCACCATTGTTCATCGAATTTATGGTGCTAGTAATGTTGCTAAATTCCTCCATGTAAGTTTATAATATACTTCATTTTCCACCTACCATTTTTAATTCTATATCATATCTCTTATTTCCATTCTTCCCCATGCTTTTTACTTACCATTTAATTCATAAACCCATCTCTTAGTTATCTATCTATTTCTTAGTATAGTATATATTGAGAGAATTAACACTCTTTTTTTCTTTTTCTTTTTTGCTAATTTAATCAGCAACTTCCTACACATTTAAGAGCAGAAGCAGCAGAAACTTTAATTTTTGAGGCAAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTAGGGATTATTTCCCAATTACAACATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGGGCTGAGATTGCTTGTGTGGCTTCCAATGTCCAAGAACAGCCTCAACCCCAAGATTTTGCATTTGAGCCCATCCAAGGCCCAAATTCTGTTGGGTTCTCTCAAATTGGGCTTTCCACTCCGGCCCATTGTTTTAATTCCACCTTTTTTCTAAATTCATAA

mRNA sequence

TATGATTTCTGGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGCCCTTCCGATTGTATTTTTTCCCCTTTCTTTCCTTCCAATAATCCTCAAAGATTCACCATTGTTCATCGAATTTATGGTGCTAGTAATGTTGCTAAATTCCTCCATCAACTTCCTACACATTTAAGAGCAGAAGCAGCAGAAACTTTAATTTTTGAGGCAAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTAGGGATTATTTCCCAATTACAACATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGGGCTGAGATTGCTTGTGTGGCTTCCAATGTCCAAGAACAGCCTCAACCCCAAGATTTTGCATTTGAGCCCATCCAAGGCCCAAATTCTGTTGGGTTCTCTCAAATTGGGCTTTCCACTCCGGCCCATTGTTTTAATTCCACCTTTTTTCTAAATTCATAA

Coding sequence (CDS)

TATGATTTCTGGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGCCCTTCCGATTGTATTTTTTCCCCTTTCTTTCCTTCCAATAATCCTCAAAGATTCACCATTGTTCATCGAATTTATGGTGCTAGTAATGTTGCTAAATTCCTCCATCAACTTCCTACACATTTAAGAGCAGAAGCAGCAGAAACTTTAATTTTTGAGGCAAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTAGGGATTATTTCCCAATTACAACATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGGGCTGAGATTGCTTGTGTGGCTTCCAATGTCCAAGAACAGCCTCAACCCCAAGATTTTGCATTTGAGCCCATCCAAGGCCCAAATTCTGTTGGGTTCTCTCAAATTGGGCTTTCCACTCCGGCCCATTGTTTTAATTCCACCTTTTTTCTAAATTCATAA

Protein sequence

MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQDFAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS*
Homology
[Close]
BLAST of Cucsa.250990 vs. Swiss-Prot
Match: LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-38
Identity = 75/117 (64.10%), Postives = 89/117 (76.07%), Query Frame = 1 

Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+F  VHRIYGA NV+K L QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQDF 122
           L FEAKCR++DPVYGCVGII  L+ ++   + +LAKT+AEIA VA     Q Q  DF
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIA-VAQTKLSQTQNSDF 120

[Close]
BLAST of Cucsa.250990 vs. Swiss-Prot
Match: LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-37
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 1 

Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+F  VHRIYGA NV+K L QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQDF 122
           L FEAKCR++DPVYGCVGII  L+ ++   + +LAKT+AEIA VA     Q    DF
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIA-VAQTKLSQTHISDF 120

[Close]
BLAST of Cucsa.250990 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 5.6e-32
Identity = 62/117 (52.99%), Postives = 85/117 (72.65%), Query Frame = 1 

Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAA 62
           S  CA+CK LRRRC  DCIF+P+FP ++P +F IVH+++GASNV+K L +LP H RA+A 
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 63  ETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQ 120
            +L+FEA  R+ DPVYGCVG IS LQ+++   + QLA  +AEI C+   +Q +P  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI--QMQNEPTLQ 120

[Close]
BLAST of Cucsa.250990 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-30
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 1 

Query: 6   CAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAETL 65
           CAACK LRRRC  DC+FSP+FP++ PQ+F  VHR++GASNV K L +LP H R +A  ++
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 66  IFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEI 106
           ++EA  R+ DPVYGCVG IS LQ ++ V + QLA  +AE+
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113

[Close]
BLAST of Cucsa.250990 vs. Swiss-Prot
Match: LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 1 

Query: 6   CAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAETL 65
           CAACK+LRR+C  DC+F+P+FP +NPQ+F  VHR++GASNV K L++L    R +A  +L
Sbjct: 34  CAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSL 93

Query: 66  IFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIA 107
            +EA  R+ DPVYGCVG+IS LQH L   +  LA+ + E++
Sbjct: 94  AYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELS 134

[Close]
BLAST of Cucsa.250990 vs. TrEMBL
Match: A0A0A0L9N7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180300 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 8.8e-85
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS 155
           FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS
Sbjct: 121 FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS 154

[Close]
BLAST of Cucsa.250990 vs. TrEMBL
Match: A0A0A0LLX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373510 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.9e-53
Identity = 111/151 (73.51%), Postives = 121/151 (80.13%), Query Frame = 1 

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  LR E
Sbjct: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRAEIA +ASN ++Q Q +D
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN-RQQAQHED 120

Query: 121 FAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 151
           F F +P  GP        GLSTPAH     F
Sbjct: 121 FPFDDPSSGPIFT-----GLSTPAHFSEQLF 145

[Close]
BLAST of Cucsa.250990 vs. TrEMBL
Match: A0A061FP58_THECC (LOB domain-containing protein 23 OS=Theobroma cacao GN=TCM_035123 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.6e-44
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 1 

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           M SGRCAAC+YLRRRCP DCIFSP+FPSNNPQRF  +HRIYGASNVAK L QLPTHLRAE
Sbjct: 1   MNSGRCAACRYLRRRCPPDCIFSPYFPSNNPQRFVSIHRIYGASNVAKLLQQLPTHLRAE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AA++L FEA+CR+EDPVYGCVG+I  LQ ++H A +QLAKT+AEIA + S  Q  PQ Q 
Sbjct: 61  AADSLYFEAQCRVEDPVYGCVGLIFLLQQQIHNAVSQLAKTQAEIAVLKSQAQ-HPQAQQ 120

Query: 121 FAFEP 126
              EP
Sbjct: 121 VEVEP 124

[Close]
BLAST of Cucsa.250990 vs. TrEMBL
Match: B9I4F9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13910g PE=4 SV=2)

HSP 1 Score: 183.3 bits (464), Expect = 2.2e-43
Identity = 88/120 (73.33%), Postives = 99/120 (82.50%), Query Frame = 1 

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSP+FPSNNPQRF  VHRIYGASNVAK L QLP HLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPYFPSNNPQRFACVHRIYGASNVAKMLQQLPAHLRAE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AA +L +EA+ R +DPVYGCVGIIS L  ++H  E+QLAKT+AEIA + S  QE  Q Q+
Sbjct: 61  AANSLYYEAQSRTQDPVYGCVGIISLLHQQIHGVESQLAKTKAEIAVLNSLAQEPAQIQE 120

[Close]
BLAST of Cucsa.250990 vs. TrEMBL
Match: A0A0B0PT25_GOSAR (LOB domain-containing 24-like protein OS=Gossypium arboreum GN=F383_07421 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-42
Identity = 87/136 (63.97%), Postives = 103/136 (75.74%), Query Frame = 1 

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           M SGRCAAC+YLRRRC  DCI SP+FPSNNPQRF  VHRIYGASNV K L +LPTHLR+E
Sbjct: 1   MSSGRCAACRYLRRRCTQDCILSPYFPSNNPQRFASVHRIYGASNVTKLLQRLPTHLRSE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AA++L FEA+CR+EDPVYGCVG+I  LQ ++H AE+QL KT+AEIA + S  Q    PQ 
Sbjct: 61  AADSLYFEAQCRLEDPVYGCVGLIFLLQQQIHSAESQLIKTQAEIAVMKSQTQ---HPQT 120

Query: 121 FAFEPIQGPNSVGFSQ 137
             F  I G N++   Q
Sbjct: 121 QPFRAISGSNNLLLQQ 133

[Close]
BLAST of Cucsa.250990 vs. TAIR10
Match: AT3G26660.1 (AT3G26660.1 LOB domain-containing protein 24)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-39
Identity = 75/117 (64.10%), Postives = 89/117 (76.07%), Query Frame = 1 

Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+F  VHRIYGA NV+K L QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQDF 122
           L FEAKCR++DPVYGCVGII  L+ ++   + +LAKT+AEIA VA     Q Q  DF
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIA-VAQTKLSQTQNSDF 120

[Close]
BLAST of Cucsa.250990 vs. TAIR10
Match: AT3G26620.1 (AT3G26620.1 LOB domain-containing protein 23)

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-39
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 1 

Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+F  VHRIYGA NV+K L QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQDF 122
           L FEAKCR++DPVYGCVGII  L+ ++   + +LAKT+AEIA VA     Q    DF
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIA-VAQTKLSQTHISDF 120

[Close]
BLAST of Cucsa.250990 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 138.7 bits (348), Expect = 3.1e-33
Identity = 62/117 (52.99%), Postives = 85/117 (72.65%), Query Frame = 1 

Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAA 62
           S  CA+CK LRRRC  DCIF+P+FP ++P +F IVH+++GASNV+K L +LP H RA+A 
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 63  ETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQ 120
            +L+FEA  R+ DPVYGCVG IS LQ+++   + QLA  +AEI C+   +Q +P  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI--QMQNEPTLQ 120

[Close]
BLAST of Cucsa.250990 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-31
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 1 

Query: 6   CAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAETL 65
           CAACK LRRRC  DC+FSP+FP++ PQ+F  VHR++GASNV K L +LP H R +A  ++
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 66  IFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEI 106
           ++EA  R+ DPVYGCVG IS LQ ++ V + QLA  +AE+
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113

[Close]
BLAST of Cucsa.250990 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-28
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = 1 

Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAA 62
           S  CAACK+LRR+C  +C+F+P+FP + PQ+F  VH+++GASNVAK L++L ++ R +A 
Sbjct: 5   SSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAV 64

Query: 63  ETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIA 107
            +L +EA+ R+ DPVYGCVG+IS LQH L      L   + E+A
Sbjct: 65  NSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELA 108

[Close]
BLAST of Cucsa.250990 vs. NCBI nr
Match: gi|449446189|ref|XP_004140854.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 1.3e-84
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS 155
           FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS
Sbjct: 121 FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS 154

[Close]
BLAST of Cucsa.250990 vs. NCBI nr
Match: gi|659077366|ref|XP_008439169.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo])

HSP 1 Score: 300.1 bits (767), Expect = 2.3e-78
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 1 

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRGE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQ-EQPQPQ 120
           AAETLIFEAKCRIEDPVYGCVGIISQLQH+LHVAETQLAKTRAEIACVASNVQ EQPQ Q
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIACVASNVQEEQPQLQ 120

Query: 121 DFAFEPIQGPNSVGFSQIGLSTPAHCFNSTFF 152
           DFAF+PIQGPNSVGFSQIGLS+PAHCFNS+FF
Sbjct: 121 DFAFQPIQGPNSVGFSQIGLSSPAHCFNSSFF 152

[Close]
BLAST of Cucsa.250990 vs. NCBI nr
Match: gi|659089563|ref|XP_008445577.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo])

HSP 1 Score: 218.4 bits (555), Expect = 8.8e-54
Identity = 112/152 (73.68%), Postives = 126/152 (82.89%), Query Frame = 1 

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  +R E
Sbjct: 1   MIPNRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDVRGE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQE-QPQPQ 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRA+IA +ASN+Q+ Q + Q
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQHEAQ 120

Query: 121 DFAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 151
            FAF +P  GP       IGLSTPAH  +S+F
Sbjct: 121 AFAFDDPSSGPIC-----IGLSTPAHWLHSSF 147

[Close]
BLAST of Cucsa.250990 vs. NCBI nr
Match: gi|700207689|gb|KGN62808.1| (hypothetical protein Csa_2G373510 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 1.3e-52
Identity = 111/151 (73.51%), Postives = 121/151 (80.13%), Query Frame = 1 

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  LR E
Sbjct: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRAEIA +ASN ++Q Q +D
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN-RQQAQHED 120

Query: 121 FAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 151
           F F +P  GP        GLSTPAH     F
Sbjct: 121 FPFDDPSSGPIFT-----GLSTPAHFSEQLF 145

[Close]
BLAST of Cucsa.250990 vs. NCBI nr
Match: gi|590599069|ref|XP_007019079.1| (LOB domain-containing protein 23 [Theobroma cacao])

HSP 1 Score: 186.4 bits (472), Expect = 3.7e-44
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 1 

Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           M SGRCAAC+YLRRRCP DCIFSP+FPSNNPQRF  +HRIYGASNVAK L QLPTHLRAE
Sbjct: 1   MNSGRCAACRYLRRRCPPDCIFSPYFPSNNPQRFVSIHRIYGASNVAKLLQQLPTHLRAE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AA++L FEA+CR+EDPVYGCVG+I  LQ ++H A +QLAKT+AEIA + S  Q  PQ Q 
Sbjct: 61  AADSLYFEAQCRVEDPVYGCVGLIFLLQQQIHNAVSQLAKTQAEIAVLKSQAQ-HPQAQQ 120

Query: 121 FAFEP 126
              EP
Sbjct: 121 VEVEP 124

The following BLAST results are available for this feature:
BLAST of Cucsa.250990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD24_ARATH3.0e-3864.10LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1[more]
LBD23_ARATH1.5e-3763.25LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1[more]
LBD12_ARATH5.6e-3252.99LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2[more]
LBD4_ARATH3.0e-3056.00LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
LBD6_MAIZE1.4e-2752.48LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1[more]
BLAST of Cucsa.250990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9N7_CUCSA8.8e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180300 PE=4 SV=1[more]
A0A0A0LLX6_CUCSA8.9e-5373.51Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373510 PE=4 SV=1[more]
A0A061FP58_THECC2.6e-4471.20LOB domain-containing protein 23 OS=Theobroma cacao GN=TCM_035123 PE=4 SV=1[more]
B9I4F9_POPTR2.2e-4373.33Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13910g PE=4 SV=2[more]
A0A0B0PT25_GOSAR2.4e-4263.97LOB domain-containing 24-like protein OS=Gossypium arboreum GN=F383_07421 PE=4 S... [more]
BLAST of Cucsa.250990 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G26660.11.7e-3964.10 LOB domain-containing protein 24[more]
AT3G26620.18.5e-3963.25 LOB domain-containing protein 23[more]
AT2G30130.13.1e-3352.99 Lateral organ boundaries (LOB) domain family protein[more]
AT1G31320.11.7e-3156.00 LOB domain-containing protein 4[more]
AT5G66870.11.0e-2850.00 ASYMMETRIC LEAVES 2-like 1[more]
BLAST of Cucsa.250990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446189|ref|XP_004140854.1|1.3e-84100.00PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus][more]
gi|659077366|ref|XP_008439169.1|2.3e-7895.39PREDICTED: LOB domain-containing protein 24-like [Cucumis melo][more]
gi|659089563|ref|XP_008445577.1|8.8e-5473.68PREDICTED: LOB domain-containing protein 24-like [Cucumis melo][more]
gi|700207689|gb|KGN62808.1|1.3e-5273.51hypothetical protein Csa_2G373510 [Cucumis sativus][more]
gi|590599069|ref|XP_007019079.1|3.7e-4471.20LOB domain-containing protein 23 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.250990.1Cucsa.250990.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 5..102
score: 1.7
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 4..105
score: 24
NoneNo IPR availableunknownCoilCoilcoord: 84..104
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 3..118
score: 5.3
NoneNo IPR availablePANTHERPTHR31301:SF13LOB DOMAIN-CONTAINING PROTEIN 23-RELATEDcoord: 3..118
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.250990Csa3G180300Cucumber (Chinese Long) v2cgycuB366
Cucsa.250990ClCG05G007800Watermelon (Charleston Gray)cgywcgB451
Cucsa.250990CSPI03G16590Wild cucumber (PI 183967)cgycpiB383
Cucsa.250990CmoCh16G001570Cucurbita moschata (Rifu)cgycmoB0704
Cucsa.250990Lsi05G012630Bottle gourd (USVL1VR-Ls)cgylsiB416
Cucsa.250990Cp4.1LG14g05950Cucurbita pepo (Zucchini)cgycpeB0673
Cucsa.250990MELO3C031638.2Melon (DHL92) v3.6.1cgymedB432
Cucsa.250990CsaV3_3G016790Cucumber (Chinese Long) v3cgycucB387
Cucsa.250990Cla97C05G089760Watermelon (97103) v2cgywmbB452
Cucsa.250990Carg16701Silver-seed gourdcarcgyB0993
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.250990Cucurbita maxima (Rimu)cgycmaB0710
Cucsa.250990Cucurbita maxima (Rimu)cgycmaB0711
Cucsa.250990Cucurbita maxima (Rimu)cgycmaB0716
Cucsa.250990Cucurbita maxima (Rimu)cgycmaB0718
Cucsa.250990Cucurbita moschata (Rifu)cgycmoB0702
Cucsa.250990Cucurbita moschata (Rifu)cgycmoB0709
Cucsa.250990Cucurbita moschata (Rifu)cgycmoB0711
Cucsa.250990Wild cucumber (PI 183967)cgycpiB386
Cucsa.250990Wild cucumber (PI 183967)cgycpiB388
Cucsa.250990Wild cucumber (PI 183967)cgycpiB391
Cucsa.250990Cucumber (Chinese Long) v2cgycuB368
Cucsa.250990Cucumber (Chinese Long) v2cgycuB370
Cucsa.250990Cucumber (Chinese Long) v2cgycuB372
Cucsa.250990Melon (DHL92) v3.5.1cgymeB428
Cucsa.250990Melon (DHL92) v3.5.1cgymeB431
Cucsa.250990Melon (DHL92) v3.5.1cgymeB439
Cucsa.250990Watermelon (Charleston Gray)cgywcgB445
Cucsa.250990Watermelon (Charleston Gray)cgywcgB447
Cucsa.250990Watermelon (97103) v1cgywmB479
Cucsa.250990Watermelon (97103) v1cgywmB480
Cucsa.250990Cucurbita pepo (Zucchini)cgycpeB0668
Cucsa.250990Cucurbita pepo (Zucchini)cgycpeB0686
Cucsa.250990Bottle gourd (USVL1VR-Ls)cgylsiB411
Cucsa.250990Melon (DHL92) v3.6.1cgymedB422
Cucsa.250990Melon (DHL92) v3.6.1cgymedB426
Cucsa.250990Silver-seed gourdcarcgyB0006
Cucsa.250990Silver-seed gourdcarcgyB1042
Cucsa.250990Silver-seed gourdcarcgyB1053
Cucsa.250990Cucumber (Chinese Long) v3cgycucB392
Cucsa.250990Cucumber (Chinese Long) v3cgycucB395
Cucsa.250990Watermelon (97103) v2cgywmbB444
Cucsa.250990Watermelon (97103) v2cgywmbB454
Cucsa.250990Wax gourdcgywgoB516
Cucsa.250990Cucumber (Gy14) v1cgycgyB126
Cucsa.250990Cucumber (Gy14) v1cgycgyB132