Csa3G180300 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G180300
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	LOB domain-containing protein, putative; contains IPR004883 (Lateral organ boundaries, LOB)
Location	Chr3 : 12377547 .. 12378211 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCTGGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGCCCTTCCGATTGTATTTTTTCCCCTTTCTTTCCTTCCAATAATCCTCAAAGATTCACCATTGTTCATCGAATTTATGGTGCTAGTAATGTTGCTAAATTCCTCCATGTAAGTTTATAATATACTTCATTTTCCACCTACCATTTTTAATTCTATATCATATCTCTTATTTCCATTCTTCCCCATGCTTTTTACTTACCATTTAATTCATAAACCCATCTCTTAGTTATCTATCTATTTCTTAGTATAGTATATATTGAGAGAATTAACACTCTTTTTTTCTTTTTCTTTTTTGCTAATTTAATCAGCAACTTCCTACACATTTAAGAGCAGAAGCAGCAGAAACTTTAATTTTTGAGGCAAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTAGGGATTATTTCCCAATTACAACATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGGGCTGAGATTGCTTGTGTGGCTTCCAATGTCCAAGAACAGCCTCAACCCCAAGATTTTGCATTTGAGCCCATCCAAGGCCCAAATTCTGTTGGGTTCTCTCAAATTGGGCTTTCCACTCCGGCCCATTGTTTTAATTCCACCTTTTTTCTAAATTCATAA

mRNA sequence

ATGATTTCTGGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGCCCTTCCGATTGTATTTTTTCCCCTTTCTTTCCTTCCAATAATCCTCAAAGATTCACCATTGTTCATCGAATTTATGGTGCTAGTAATGTTGCTAAATTCCTCCATCAACTTCCTACACATTTAAGAGCAGAAGCAGCAGAAACTTTAATTTTTGAGGCAAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTAGGGATTATTTCCCAATTACAACATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGGGCTGAGATTGCTTGTGTGGCTTCCAATGTCCAAGAACAGCCTCAACCCCAAGATTTTGCATTTGAGCCCATCCAAGGCCCAAATTCTGTTGGGTTCTCTCAAATTGGGCTTTCCACTCCGGCCCATTGTTTTAATTCCACCTTTTTTCTAAATTCATAA

Coding sequence (CDS)

ATGATTTCTGGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGCCCTTCCGATTGTATTTTTTCCCCTTTCTTTCCTTCCAATAATCCTCAAAGATTCACCATTGTTCATCGAATTTATGGTGCTAGTAATGTTGCTAAATTCCTCCATCAACTTCCTACACATTTAAGAGCAGAAGCAGCAGAAACTTTAATTTTTGAGGCAAAATGCAGAATTGAAGATCCAGTTTATGGATGTGTAGGGATTATTTCCCAATTACAACATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGGGCTGAGATTGCTTGTGTGGCTTCCAATGTCCAAGAACAGCCTCAACCCCAAGATTTTGCATTTGAGCCCATCCAAGGCCCAAATTCTGTTGGGTTCTCTCAAATTGGGCTTTCCACTCCGGCCCATTGTTTTAATTCCACCTTTTTTCTAAATTCATAA

Protein sequence

MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQDFAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS*

Homology

[Close]

BLAST of Csa3G180300 vs. Swiss-Prot
Match: LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-38
Identity = 75/117 (64.10%), Postives = 87/117 (74.36%), Query Frame = 1


Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+F  VHRIYGA NV+K L QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQDF 122
           L FEAKCR++DPVYGCVGII  L+ ++   + +LAKT+AEIA VA     Q Q  DF
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIA-VAQTKLSQTQNSDF 120

[Close]

BLAST of Csa3G180300 vs. Swiss-Prot
Match: LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-37
Identity = 74/117 (63.25%), Postives = 86/117 (73.50%), Query Frame = 1


Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+F  VHRIYGA NV+K L QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQDF 122
           L FEAKCR++DPVYGCVGII  L+ ++   + +LAKT+AEIA VA     Q    DF
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIA-VAQTKLSQTHISDF 120

[Close]

BLAST of Csa3G180300 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 5.6e-32
Identity = 62/117 (52.99%), Postives = 83/117 (70.94%), Query Frame = 1


Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAA 62
           S  CA+CK LRRRC  DCIF+P+FP ++P +F IVH+++GASNV+K L +LP H RA+A 
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 63  ETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQ 120
            +L+FEA  R+ DPVYGCVG IS LQ+++   + QLA  +AEI C+   +Q +P  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI--QMQNEPTLQ 120

[Close]

BLAST of Csa3G180300 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-30
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 1


Query: 6   CAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAETL 65
           CAACK LRRRC  DC+FSP+FP++ PQ+F  VHR++GASNV K L +LP H R +A  ++
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 66  IFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEI 106
           ++EA  R+ DPVYGCVG IS LQ ++ V + QLA  +AE+
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113

[Close]

BLAST of Csa3G180300 vs. Swiss-Prot
Match: LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 6   CAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAETL 65
           CAACK+LRR+C  DC+F+P+FP +NPQ+F  VHR++GASNV K L++L    R +A  +L
Sbjct: 34  CAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSL 93

Query: 66  IFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIA 107
            +EA  R+ DPVYGCVG+IS LQH L   +  LA+ + E++
Sbjct: 94  AYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELS 134

[Close]

BLAST of Csa3G180300 vs. TrEMBL
Match: A0A0A0L9N7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180300 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 8.8e-85
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS 155
           FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS
Sbjct: 121 FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS 154

[Close]

BLAST of Csa3G180300 vs. TrEMBL
Match: A0A0A0LLX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373510 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.9e-53
Identity = 111/151 (73.51%), Postives = 121/151 (80.13%), Query Frame = 1


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  LR E
Sbjct: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRAEIA +ASN ++Q Q +D
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN-RQQAQHED 120

Query: 121 FAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 151
           F F +P  GP        GLSTPAH     F
Sbjct: 121 FPFDDPSSGPIFT-----GLSTPAHFSEQLF 145

[Close]

BLAST of Csa3G180300 vs. TrEMBL
Match: A0A061FP58_THECC (LOB domain-containing protein 23 OS=Theobroma cacao GN=TCM_035123 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.6e-44
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 1


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           M SGRCAAC+YLRRRCP DCIFSP+FPSNNPQRF  +HRIYGASNVAK L QLPTHLRAE
Sbjct: 1   MNSGRCAACRYLRRRCPPDCIFSPYFPSNNPQRFVSIHRIYGASNVAKLLQQLPTHLRAE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AA++L FEA+CR+EDPVYGCVG+I  LQ ++H A +QLAKT+AEIA + S  Q  PQ Q 
Sbjct: 61  AADSLYFEAQCRVEDPVYGCVGLIFLLQQQIHNAVSQLAKTQAEIAVLKSQAQ-HPQAQQ 120

Query: 121 FAFEP 126
              EP
Sbjct: 121 VEVEP 124

[Close]

BLAST of Csa3G180300 vs. TrEMBL
Match: B9I4F9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13910g PE=4 SV=2)

HSP 1 Score: 183.3 bits (464), Expect = 2.2e-43
Identity = 88/120 (73.33%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSP+FPSNNPQRF  VHRIYGASNVAK L QLP HLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPYFPSNNPQRFACVHRIYGASNVAKMLQQLPAHLRAE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AA +L +EA+ R +DPVYGCVGIIS L  ++H  E+QLAKT+AEIA + S  QE  Q Q+
Sbjct: 61  AANSLYYEAQSRTQDPVYGCVGIISLLHQQIHGVESQLAKTKAEIAVLNSLAQEPAQIQE 120

[Close]

BLAST of Csa3G180300 vs. TrEMBL
Match: A0A0B0PT25_GOSAR (LOB domain-containing 24-like protein OS=Gossypium arboreum GN=F383_07421 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-42
Identity = 87/136 (63.97%), Postives = 103/136 (75.74%), Query Frame = 1


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           M SGRCAAC+YLRRRC  DCI SP+FPSNNPQRF  VHRIYGASNV K L +LPTHLR+E
Sbjct: 1   MSSGRCAACRYLRRRCTQDCILSPYFPSNNPQRFASVHRIYGASNVTKLLQRLPTHLRSE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AA++L FEA+CR+EDPVYGCVG+I  LQ ++H AE+QL KT+AEIA + S  Q    PQ 
Sbjct: 61  AADSLYFEAQCRLEDPVYGCVGLIFLLQQQIHSAESQLIKTQAEIAVMKSQTQ---HPQT 120

Query: 121 FAFEPIQGPNSVGFSQ 137
             F  I G N++   Q
Sbjct: 121 QPFRAISGSNNLLLQQ 133

[Close]

BLAST of Csa3G180300 vs. TAIR10
Match: AT3G26660.1 (AT3G26660.1 LOB domain-containing protein 24)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-39
Identity = 75/117 (64.10%), Postives = 87/117 (74.36%), Query Frame = 1


Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+F  VHRIYGA NV+K L QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQDF 122
           L FEAKCR++DPVYGCVGII  L+ ++   + +LAKT+AEIA VA     Q Q  DF
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIA-VAQTKLSQTQNSDF 120

[Close]

BLAST of Csa3G180300 vs. TAIR10
Match: AT3G26620.1 (AT3G26620.1 LOB domain-containing protein 23)

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-39
Identity = 74/117 (63.25%), Postives = 86/117 (73.50%), Query Frame = 1


Query: 5   RCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAET 64
           RCAACKYLRRRCP DC+FSP+FP N+PQ+F  VHRIYGA NV+K L QLP   RAEA E+
Sbjct: 5   RCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVES 64

Query: 65  LIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQDF 122
           L FEAKCR++DPVYGCVGII  L+ ++   + +LAKT+AEIA VA     Q    DF
Sbjct: 65  LCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIA-VAQTKLSQTHISDF 120

[Close]

BLAST of Csa3G180300 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 138.7 bits (348), Expect = 3.1e-33
Identity = 62/117 (52.99%), Postives = 83/117 (70.94%), Query Frame = 1


Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAA 62
           S  CA+CK LRRRC  DCIF+P+FP ++P +F IVH+++GASNV+K L +LP H RA+A 
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 63  ETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQ 120
            +L+FEA  R+ DPVYGCVG IS LQ+++   + QLA  +AEI C+   +Q +P  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI--QMQNEPTLQ 120

[Close]

BLAST of Csa3G180300 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-31
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 1


Query: 6   CAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAAETL 65
           CAACK LRRRC  DC+FSP+FP++ PQ+F  VHR++GASNV K L +LP H R +A  ++
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 66  IFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEI 106
           ++EA  R+ DPVYGCVG IS LQ ++ V + QLA  +AE+
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113

[Close]

BLAST of Csa3G180300 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-28
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 3   SGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAEAA 62
           S  CAACK+LRR+C  +C+F+P+FP + PQ+F  VH+++GASNVAK L++L ++ R +A 
Sbjct: 5   SSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAV 64

Query: 63  ETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIA 107
            +L +EA+ R+ DPVYGCVG+IS LQH L      L   + E+A
Sbjct: 65  NSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELA 108

[Close]

BLAST of Csa3G180300 vs. NCBI nr
Match: gi|449446189|ref|XP_004140854.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 1.3e-84
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS 155
           FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS
Sbjct: 121 FAFEPIQGPNSVGFSQIGLSTPAHCFNSTFFLNS 154

[Close]

BLAST of Csa3G180300 vs. NCBI nr
Match: gi|659077366|ref|XP_008439169.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo])

HSP 1 Score: 300.1 bits (767), Expect = 2.3e-78
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 1


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRGE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQ-EQPQPQ 120
           AAETLIFEAKCRIEDPVYGCVGIISQLQH+LHVAETQLAKTRAEIACVASNVQ EQPQ Q
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIACVASNVQEEQPQLQ 120

Query: 121 DFAFEPIQGPNSVGFSQIGLSTPAHCFNSTFF 152
           DFAF+PIQGPNSVGFSQIGLS+PAHCFNS+FF
Sbjct: 121 DFAFQPIQGPNSVGFSQIGLSSPAHCFNSSFF 152

[Close]

BLAST of Csa3G180300 vs. NCBI nr
Match: gi|659089563|ref|XP_008445577.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo])

HSP 1 Score: 218.4 bits (555), Expect = 8.8e-54
Identity = 112/152 (73.68%), Postives = 126/152 (82.89%), Query Frame = 1


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  +R E
Sbjct: 1   MIPNRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDVRGE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQE-QPQPQ 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRA+IA +ASN+Q+ Q + Q
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQHEAQ 120

Query: 121 DFAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 151
            FAF +P  GP       IGLSTPAH  +S+F
Sbjct: 121 AFAFDDPSSGPIC-----IGLSTPAHWLHSSF 147

[Close]

BLAST of Csa3G180300 vs. NCBI nr
Match: gi|700207689|gb|KGN62808.1| (hypothetical protein Csa_2G373510 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 1.3e-52
Identity = 111/151 (73.51%), Postives = 121/151 (80.13%), Query Frame = 1


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  LR E
Sbjct: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRAEIA +ASN ++Q Q +D
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN-RQQAQHED 120

Query: 121 FAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 151
           F F +P  GP        GLSTPAH     F
Sbjct: 121 FPFDDPSSGPIFT-----GLSTPAHFSEQLF 145

[Close]

BLAST of Csa3G180300 vs. NCBI nr
Match: gi|590599069|ref|XP_007019079.1| (LOB domain-containing protein 23 [Theobroma cacao])

HSP 1 Score: 186.4 bits (472), Expect = 3.7e-44
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 1


Query: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60
           M SGRCAAC+YLRRRCP DCIFSP+FPSNNPQRF  +HRIYGASNVAK L QLPTHLRAE
Sbjct: 1   MNSGRCAACRYLRRRCPPDCIFSPYFPSNNPQRFVSIHRIYGASNVAKLLQQLPTHLRAE 60

Query: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120
           AA++L FEA+CR+EDPVYGCVG+I  LQ ++H A +QLAKT+AEIA + S  Q  PQ Q 
Sbjct: 61  AADSLYFEAQCRVEDPVYGCVGLIFLLQQQIHNAVSQLAKTQAEIAVLKSQAQ-HPQAQQ 120

Query: 121 FAFEP 126
              EP
Sbjct: 121 VEVEP 124

The following BLAST results are available for this feature:

BLAST of Csa3G180300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD24_ARATH	3.0e-38	64.10	LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1	[more]
LBD23_ARATH	1.5e-37	63.25	LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1	[more]
LBD12_ARATH	5.6e-32	52.99	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD4_ARATH	3.0e-30	56.00	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD6_MAIZE	1.4e-27	52.48	LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1	[more]

BLAST of Csa3G180300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9N7_CUCSA	8.8e-85	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180300 PE=4 SV=1	[more]
A0A0A0LLX6_CUCSA	8.9e-53	73.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373510 PE=4 SV=1	[more]
A0A061FP58_THECC	2.6e-44	71.20	LOB domain-containing protein 23 OS=Theobroma cacao GN=TCM_035123 PE=4 SV=1	[more]
B9I4F9_POPTR	2.2e-43	73.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13910g PE=4 SV=2	[more]
A0A0B0PT25_GOSAR	2.4e-42	63.97	LOB domain-containing 24-like protein OS=Gossypium arboreum GN=F383_07421 PE=4 S...	[more]

BLAST of Csa3G180300 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26660.1	1.7e-39	64.10	LOB domain-containing protein 24	[more]
AT3G26620.1	8.5e-39	63.25	LOB domain-containing protein 23	[more]
AT2G30130.1	3.1e-33	52.99	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	1.7e-31	56.00	LOB domain-containing protein 4	[more]
AT5G66870.1	1.0e-28	50.00	ASYMMETRIC LEAVES 2-like 1	[more]

BLAST of Csa3G180300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446189\|ref\|XP_004140854.1\|	1.3e-84	100.00	PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus]	[more]
gi\|659077366\|ref\|XP_008439169.1\|	2.3e-78	95.39	PREDICTED: LOB domain-containing protein 24-like [Cucumis melo]	[more]
gi\|659089563\|ref\|XP_008445577.1\|	8.8e-54	73.68	PREDICTED: LOB domain-containing protein 24-like [Cucumis melo]	[more]
gi\|700207689\|gb\|KGN62808.1\|	1.3e-52	73.51	hypothetical protein Csa_2G373510 [Cucumis sativus]	[more]
gi\|590599069\|ref\|XP_007019079.1\|	3.7e-44	71.20	LOB domain-containing protein 23 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G180300.1	Csa3G180300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 5..102 score: 1.7
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 4..105 score: 24
None	No IPR available	unknown	Coil	Coil	coord: 84..104 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 3..118 score: 5.3
None	No IPR available	PANTHER	PTHR31301:SF13	LOB DOMAIN-CONTAINING PROTEIN 23-RELATED	coord: 3..118 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G180300	ClCG05G007800	Watermelon (Charleston Gray)	cuwcgB222
Csa3G180300	Lsi05G012630	Bottle gourd (USVL1VR-Ls)	culsiB210
Csa3G180300	MELO3C031638.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G180300	Cla97C05G089760	Watermelon (97103) v2	cuwmbB204
Csa3G180300	CSPI03G16590	Wild cucumber (PI 183967)	cpicuB120
Csa3G180300	Cucsa.250990	Cucumber (Gy14) v1	cgycuB366
Csa3G180300	Cp4.1LG14g05950	Cucurbita pepo (Zucchini)	cpecuB214
Csa3G180300	CsGy3G016710	Cucumber (Gy14) v2	cgybcuB109
Csa3G180300	Carg16701	Silver-seed gourd	carcuB0885

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G180300	Cucumber (Gy14) v2	cgybcuB213
Csa3G180300	Melon (DHL92) v3.6.1	cumedB154
Csa3G180300	Silver-seed gourd	carcuB0007
Csa3G180300	Silver-seed gourd	carcuB0730
Csa3G180300	Silver-seed gourd	carcuB0933
Csa3G180300	Silver-seed gourd	carcuB0952
Csa3G180300	Watermelon (97103) v2	cuwmbB179
Csa3G180300	Wax gourd	cuwgoB254
Csa3G180300	Wax gourd	cuwgoB286
Csa3G180300	Cucumber (Chinese Long) v2	cucuB102
Csa3G180300	Cucumber (Chinese Long) v2	cucuB125
Csa3G180300	Cucumber (Gy14) v1	cgycuB430
Csa3G180300	Cucurbita maxima (Rimu)	cmacuB283
Csa3G180300	Cucurbita maxima (Rimu)	cmacuB329
Csa3G180300	Cucurbita maxima (Rimu)	cmacuB408
Csa3G180300	Cucurbita maxima (Rimu)	cmacuB596
Csa3G180300	Cucurbita maxima (Rimu)	cmacuB603
Csa3G180300	Cucurbita moschata (Rifu)	cmocuB269
Csa3G180300	Cucurbita moschata (Rifu)	cmocuB317
Csa3G180300	Cucurbita moschata (Rifu)	cmocuB398
Csa3G180300	Cucurbita moschata (Rifu)	cmocuB583
Csa3G180300	Melon (DHL92) v3.5.1	cumeB173
Csa3G180300	Melon (DHL92) v3.5.1	cumeB236
Csa3G180300	Watermelon (Charleston Gray)	cuwcgB208
Csa3G180300	Watermelon (Charleston Gray)	cuwcgB250
Csa3G180300	Watermelon (97103) v1	cuwmB233
Csa3G180300	Watermelon (97103) v1	cuwmB262
Csa3G180300	Cucurbita pepo (Zucchini)	cpecuB039
Csa3G180300	Cucurbita pepo (Zucchini)	cpecuB171
Csa3G180300	Cucurbita pepo (Zucchini)	cpecuB719
Csa3G180300	Cucurbita pepo (Zucchini)	cpecuB725
Csa3G180300	Bottle gourd (USVL1VR-Ls)	culsiB156