Cucsa.244440 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.244440
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold02135 : 255224 .. 255786 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTAACTCAATTCAACTAATAATTTCAAGCTATGTGCTTTGTTTCATGTTTCATCCTTCTTGTGTTTGATTTGGCATTGTGAAGCTGTAATGGTTATGTTTGTGAGTTTCCTTGTAAGATTCATTCATATTAGAGTTATAGTTATAAATCCTAAACCCTAAAAGTGGTACTCCATATTTGTGTGGAAGAAAGTAATGTACAATACTATGAACTGTATTGAAGGAATAAGAACATGCATGATGTTTTAGTTTAGGGTTCAACATGTGCATCCATAATATTATTGTGTTGCCCATTTGTATTGAACTATCACGTGTAAATGAAAGAACTTTGTTCATTTGATTATGATATATTAAGTTC

mRNA sequence

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTAACTCAATTCAACTAATAATTTCAAGCTATGTGCTTTGTTTCATGTTTCATCCTTCTTGTGTTTGATTTGGCATTGTGAAGCTGTAATGGTTATGTTTGTGAGTTTCCTTGTAAGATTCATTCATATTAGAGTTATAGTTATAAATCCTAAACCCTAAAAGTGGTACTCCATATTTGTGTGGAAGAAAGTAATGTACAATACTATGAACTGTATTGAAGGAATAAGAACATGCATGATGTTTTAGTTTAGGGTTCAACATGTGCATCCATAATATTATTGTGTTGCCCATTTGTATTGAACTATCACGTGTAAATGAAAGAACTTTGTTCATTTGATTATGATATATTAAGTTC

Coding sequence (CDS)

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTAACTCAATTCAACTAA

Protein sequence

MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEHCATISATSKVTQFN*
Homology
[Close]
BLAST of Cucsa.244440 vs. TrEMBL
Match: A0A0A0LBY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G205290 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
          MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1  MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61 CATISATSKV 71
          CATISATSKV
Sbjct: 61 CATISATSKV 70

[Close]
BLAST of Cucsa.244440 vs. NCBI nr
Match: gi|700202393|gb|KGN57526.1| (hypothetical protein Csa_3G205290 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
          MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1  MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61 CATISATSKV 71
          CATISATSKV
Sbjct: 61 CATISATSKV 70

The following BLAST results are available for this feature:
BLAST of Cucsa.244440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBY3_CUCSA2.1e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G205290 PE=4 SV=1[more]
BLAST of Cucsa.244440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202393|gb|KGN57526.1|3.0e-31100.00hypothetical protein Csa_3G205290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.244440.1Cucsa.244440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.244440Csa3G205290Cucumber (Chinese Long) v2cgycuB350
Cucsa.244440CSPI03G18400Wild cucumber (PI 183967)cgycpiB366
Cucsa.244440CsaV3_3G018480Cucumber (Chinese Long) v3cgycucB369
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.244440Cucumber (Gy14) v1cgycgyB117
Cucsa.244440Cucurbita maxima (Rimu)cgycmaB0684
Cucsa.244440Cucurbita maxima (Rimu)cgycmaB0685
Cucsa.244440Cucurbita maxima (Rimu)cgycmaB0686
Cucsa.244440Cucurbita maxima (Rimu)cgycmaB0687
Cucsa.244440Cucurbita moschata (Rifu)cgycmoB0684
Cucsa.244440Cucurbita moschata (Rifu)cgycmoB0685
Cucsa.244440Cucurbita moschata (Rifu)cgycmoB0686
Cucsa.244440Cucurbita moschata (Rifu)cgycmoB0687
Cucsa.244440Wild cucumber (PI 183967)cgycpiB367
Cucsa.244440Cucumber (Chinese Long) v2cgycuB351
Cucsa.244440Melon (DHL92) v3.5.1cgymeB416
Cucsa.244440Melon (DHL92) v3.5.1cgymeB417
Cucsa.244440Watermelon (Charleston Gray)cgywcgB432
Cucsa.244440Watermelon (Charleston Gray)cgywcgB433
Cucsa.244440Watermelon (97103) v1cgywmB462
Cucsa.244440Watermelon (97103) v1cgywmB463
Cucsa.244440Cucurbita pepo (Zucchini)cgycpeB0652
Cucsa.244440Cucurbita pepo (Zucchini)cgycpeB0653
Cucsa.244440Cucurbita pepo (Zucchini)cgycpeB0654
Cucsa.244440Bottle gourd (USVL1VR-Ls)cgylsiB403
Cucsa.244440Bottle gourd (USVL1VR-Ls)cgylsiB404
Cucsa.244440Melon (DHL92) v3.6.1cgymedB411
Cucsa.244440Melon (DHL92) v3.6.1cgymedB412
Cucsa.244440Silver-seed gourdcarcgyB0253
Cucsa.244440Silver-seed gourdcarcgyB0436
Cucsa.244440Silver-seed gourdcarcgyB0734
Cucsa.244440Cucumber (Chinese Long) v3cgycucB370
Cucsa.244440Watermelon (97103) v2cgywmbB434
Cucsa.244440Watermelon (97103) v2cgywmbB435
Cucsa.244440Wax gourdcgywgoB493
Cucsa.244440Wax gourdcgywgoB494