Cucsa.244440.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.244440.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold02135 : 255224 .. 255786 (-)
Sequence length563
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTAACTCAATTCAACTAATAATTTCAAGCTATGTGCTTTGTTTCATGTTTCATCCTTCTTGTGTTTGATTTGGCATTGTGAAGCTGTAATGGTTATGTTTGTGAGTTTCCTTGTAAGATTCATTCATATTAGAGTTATAGTTATAAATCCTAAACCCTAAAAGTGGTACTCCATATTTGTGTGGAAGAAAGTAATGTACAATACTATGAACTGTATTGAAGGAATAAGAACATGCATGATGTTTTAGTTTAGGGTTCAACATGTGCATCCATAATATTATTGTGTTGCCCATTTGTATTGAACTATCACGTGTAAATGAAAGAACTTTGTTCATTTGATTATGATATATTAAGTTC

mRNA sequence

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTAACTCAATTCAACTAATAATTTCAAGCTATGTGCTTTGTTTCATGTTTCATCCTTCTTGTGTTTGATTTGGCATTGTGAAGCTGTAATGGTTATGTTTGTGAGTTTCCTTGTAAGATTCATTCATATTAGAGTTATAGTTATAAATCCTAAACCCTAAAAGTGGTACTCCATATTTGTGTGGAAGAAAGTAATGTACAATACTATGAACTGTATTGAAGGAATAAGAACATGCATGATGTTTTAGTTTAGGGTTCAACATGTGCATCCATAATATTATTGTGTTGCCCATTTGTATTGAACTATCACGTGTAAATGAAAGAACTTTGTTCATTTGATTATGATATATTAAGTTC

Coding sequence (CDS)

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTAACTCAATTCAACTAA

Protein sequence

MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEHCATISATSKVTQFN*
Homology
[Close]
BLAST of Cucsa.244440.1 vs. TrEMBL
Match: A0A0A0LBY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G205290 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
          MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1  MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61 CATISATSKV 71
          CATISATSKV
Sbjct: 61 CATISATSKV 70

[Close]
BLAST of Cucsa.244440.1 vs. NCBI nr
Match: gi|700202393|gb|KGN57526.1| (hypothetical protein Csa_3G205290 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
          MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1  MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61 CATISATSKV 71
          CATISATSKV
Sbjct: 61 CATISATSKV 70

The following BLAST results are available for this feature:
BLAST of Cucsa.244440.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBY3_CUCSA2.1e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G205290 PE=4 SV=1[more]
BLAST of Cucsa.244440.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202393|gb|KGN57526.1|3.0e-31100.00hypothetical protein Csa_3G205290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.244440Cucsa.244440gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.244440.1Cucsa.244440.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.244440.1.CDS.1Cucsa.244440.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.244440.1.three_prime_UTR.1Cucsa.244440.1.three_prime_UTR.1three_prime_UTR