CsaV3_3G018480 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018480
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14210385 .. 14212418 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTACTGCAATTTGAGATTTCAATGACACAATGAAATAAAAAATAAATGGGTTTAGGAGGAAAAATGTGTCATTCTTATTAAACAGGCATGTTTTTTTTAAAGAAGATAGAAACTCCTTCACGAAAAAACACCAACCCTTTTCCTCAGTAAGCCTCTTCACCTTCTCCATGATTTCGATTACCACCTCCTTCAACCCTGATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTAACTCAATTCAACTAATAATTTCAAGCTATGTGCTTTGTTTCATGTTTCATCCTTCTTGTGTTTGATTTGGCATTGTGAAGCTGTAATGGTTATGTTTGTGAGTTTCCTTGTAAGATTCATTCATATTAGAGTTATAGTTATAAATCCTAAACCCTAAAAGTGGTACTCCATATTTGTGTGGAAGAAAGTAATGTACAATACTATGAACTGTATTGAAGGAATAAGAACATGCATGATGTTTTAGTTTAGGGTTCAACATGTGCATCCATAATATTATTGTGTTGCCCATTTGTATTGAACTATGACGTGTAAATGAAAGAACTTTGTTCATTTGATTATGATATATTAAGTTAAAAAACGCATGAATCTATTGGTTCACAATAATTGATTATTGTAAAAGGTAGTTATGTCTTGTTAGATTTTATTGTAGTTTGGTGAATTGAGTTTGAGGTGGTGTTTTGTTTATCTCCAAAGGTAAGTTCAGTCATCCATCTCTCAAGTCGTTCTTTCTCTCTCTTGTTTTTCTCATTGATTTTGTTTGTTTAATTTTTGATATCTATCCTTATTCCTCACTGTTGAATTTATTACATTACACAGAAGCTTGCTCCATCAATACAACCTTTATTAGTATGCTCAAAACTTGTTTGAGGAAATGTCGCATCTCAACAAAGTCTTAGCTTAAAATGAGTCTCAAAACTACAATTTTTCTTACATTACTACTTTAGATTCAATTTTTTACTGGTAAATTTTCAACTCATTTGCTATTAAAATGTGTTTATCCATGTGTTGTTGGTGGTTAATTTACATGTTTATGGCCGTTTTATGAGTTTCATGAGATTTTGTGTAAATTGAAAGAGTAAGGATTTCAACATCACTAAATTTCAATATAATTTGAGGATGTCAAAATATATGCTAAGCTATAAAAAAAAATGGTAGTCCAATGAGGGTCTCTAATGTCATTCTCCATCTTTGTCCAATTTTTGAACTTGACTTACTTTAATTGTAAAACGACAAGCAAACAAGAGGGTATCTTCTAACTACTTATGTGGATGATTTCTTTAATATTATAAAGTAAACTTATTGTTTTTTATGTGTTTGGTTGTACTTATAATATATTTATTTTTGAAATTATTGCTAATGATTAGGTTTAGAAATTGGTATAGATTAAGAATTGTGTTTGAAGGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGAAGAGGCAAAGAAGAGAAATGGGCGATAACTAAAGTAGGGGTCGAATGCCAGCGTCGAGAGTTCTACCAAGTCCCTCCCACCACAACACAAAGAGTTGCATCTTGGTGGCGAAGAGAGGTTGGTACATTGCTACACGATGAGACAAGTAAATCTGACATAAAGATGAAAAAGAGGTACCAAGCTATAGGATCATGTTTTAAGTCGTGTTATAAGAGAAAAGTTTAAATTATGTAGAACATTGTAAAAGTGTTAAGTTAATAAAAAAAACATTTCATACTCATTCCACTGTATTATGCGTTTCTATCATGTAATTAAATACAAGGCAAAAAGAGAATGCACTATCAAG

mRNA sequence

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGA

Coding sequence (CDS)

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGA

Protein sequence

MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEHCATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN
Homology
[Close]
BLAST of CsaV3_3G018480 vs. NCBI nr
Match: KGN57526.1 (hypothetical protein Csa_3G205290 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 2.0e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
           MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 101
           CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN
Sbjct: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 100

[Close]
BLAST of CsaV3_3G018480 vs. TrEMBL
Match: tr|A0A0A0LBY3|A0A0A0LBY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G205290 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
           MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 101
           CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN
Sbjct: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 100

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018480 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57526.12.0e-47100.00hypothetical protein Csa_3G205290 [Cucumis sativus][more]
BLAST of CsaV3_3G018480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018480 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBY3|A0A0A0LBY3_CUCSA1.4e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G205290 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018480.1CsaV3_3G018480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G018480CSPI03G18400Wild cucumber (PI 183967)cpicucB144
CsaV3_3G018480Cucsa.244440Cucumber (Gy14) v1cgycucB369
CsaV3_3G018480CsGy3G018270Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G018480Cucumber (Chinese Long) v3cuccucB153
CsaV3_3G018480Cucumber (Chinese Long) v3cuccucB156
CsaV3_3G018480Silver-seed gourdcarcucB0236
CsaV3_3G018480Silver-seed gourdcarcucB0403
CsaV3_3G018480Silver-seed gourdcarcucB0687
CsaV3_3G018480Cucumber (Gy14) v2cgybcucB282
CsaV3_3G018480Cucumber (Gy14) v2cgybcucB329
CsaV3_3G018480Cucumber (Gy14) v1cgycucB123
CsaV3_3G018480Cucumber (Gy14) v1cgycucB338
CsaV3_3G018480Cucurbita maxima (Rimu)cmacucB0145
CsaV3_3G018480Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G018480Cucurbita maxima (Rimu)cmacucB0618
CsaV3_3G018480Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G018480Cucurbita moschata (Rifu)cmocucB0133
CsaV3_3G018480Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G018480Cucurbita moschata (Rifu)cmocucB0602
CsaV3_3G018480Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G018480Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G018480Cucurbita pepo (Zucchini)cpecucB0302
CsaV3_3G018480Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G018480Wild cucumber (PI 183967)cpicucB347
CsaV3_3G018480Wild cucumber (PI 183967)cpicucB396
CsaV3_3G018480Bottle gourd (USVL1VR-Ls)cuclsiB184
CsaV3_3G018480Bottle gourd (USVL1VR-Ls)cuclsiB205
CsaV3_3G018480Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G018480Melon (DHL92) v3.5.1cucmeB189
CsaV3_3G018480Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G018480Melon (DHL92) v3.5.1cucmeB265
CsaV3_3G018480Melon (DHL92) v3.6.1cucmedB181
CsaV3_3G018480Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G018480Melon (DHL92) v3.6.1cucmedB260
CsaV3_3G018480Watermelon (Charleston Gray)cucwcgB214
CsaV3_3G018480Watermelon (Charleston Gray)cucwcgB218
CsaV3_3G018480Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G018480Watermelon (97103) v1cucwmB252
CsaV3_3G018480Watermelon (97103) v1cucwmB279
CsaV3_3G018480Watermelon (97103) v2cucwmbB201
CsaV3_3G018480Watermelon (97103) v2cucwmbB217
CsaV3_3G018480Wax gourdcucwgoB313
CsaV3_3G018480Wax gourdcucwgoB287