CSPI03G18400 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G18400
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 14072112 .. 14074063 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAATTAACAATTCACGTTATATTAAGTTTGCGTCATTACAAACTACCATTACTGCAATTTGAGATTTCAATGACACAATGAAATAAAAAATAAATGGGTTTAGGAGGAAAAATGTGTCATTCTTATTAAACAGGCATGTTTTTTTTAAAGAAGATAGAAACTCCTTCACGAAAAAACACCAACCCTTTTCCTCAGTAAGCCTCTTCACCTTCTCCATGATTTCGATTACCACCTCCTTCAACCCTGATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTAACTCAATTCAACTAATAATTTCAAGCTATGTGCTTTGTTTCATGTTTCATCCTTCTTGTGTTTGATTTGGCATTGTGAAGCTGTAATGGTTATGTTTGTGAGTTTCCTTGTAAGATTCATTCATATTAGAGTTATAGTTATAAATCCTAAACCCTAAAAGTGGTACTCCATATTTGTGTGGAAGAAAGTAATGTACAATACTATGAACTGTATTGAAGGAATAAGAACATGCATGATGTTTTAGTTTAGGGTTCAACATGTGCATCCATAATATTATTGTGTTGCCCATTTGTATTGAACTATGACGTGTAAATGAAAGAACTTTGTTCATTTGATTATGATATATTAAGTTAAAAAACGCATGAATCTATTGGTTCACAATAATTGATTATTGTAAAAGGTAGTTATGTCTTGTTAGATTTTATTGTAGTTTGGTGAATTGAGTTTGAGGTGGTGTTTTGTTTATCTCCAAAGGTAAGTTCAGTCATCCATCTCTCAAGTCGTTCTTTCTCTCTCTTGTTTTTCTCATTGATTTTGTTTGTTTAATTTTTGATATCTATCCTTATTCCTCACTGTTGAATTTATTACATTACACAGAAGCTTGCTCCATCAATACAACCTTTATTAGTATGCTCAAAACTTGTTTGAGGAAATGTCGCATCTCAACAAAGTCTTAGCTTAAAATGAGTCTCAAAACTACAATTTTTCTTACATTACTACTTTAGATTCAATTTTTTACTGGTAAATTTTCAACTCATTTGCTATTAAAATGTGTTTATCCATGTGTTGTTGGTGGTTAATTTACATGTTTATGGCCGTTTTATGAGTTTCATGAGATTTTGTGTAAATTGAAAGAGTAAGGATTTCAACATCACTAAATTTCAATATAATTTGAGGATGTCAAAATATATGCTAAGCTATAAAAAAAAATGGTAGTCCAATGAGGGTCTCTAATGTCATTCTCCATCTTTGTCCAATTTTTGAACTTGACTTACTTTAATTGTAAAACGACAAGCAAACAAGAGGGTATCTTCTAACTACTTATGTGGATGATTTCTTTAATATTATAAAGTAAACTTATTGTTTTTTATGTGTTTGGTTGTACTTATAATATATTTATTTTTGAAATTATTGCTAATGATTAGGTTTAGAAATTGGTATAGATTAAGAATTGTGTTTGAAGGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGAAGAGGCAAAGAAGAGAAATGGGCGATAACTAAAGTAGGGGTCGAATGCCAGCGTCGAGAGTTCTACCAAGTCCCTCCCACCACAACACAAAGAGTTGCATCTTGGTGGCGAAGAGAGGTTGGTACATTGCTACACGATGAGACAAGTAAATCTGACATAAAGATGAAAAAGAGGTACCAAGCTATAGGATCATGTTTTAAGTCGTGTTATAAGA

mRNA sequence

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGA

Coding sequence (CDS)

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGA
Homology
[Close]
BLAST of CSPI03G18400 vs. TrEMBL
Match: A0A0A0LBY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G205290 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.3e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
           MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 101
           CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN
Sbjct: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 100

[Close]
BLAST of CSPI03G18400 vs. NCBI nr
Match: gi|700202393|gb|KGN57526.1| (hypothetical protein Csa_3G205290 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
           MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 101
           CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN
Sbjct: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 100

The following BLAST results are available for this feature:
BLAST of CSPI03G18400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G18400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBY3_CUCSA7.3e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G205290 PE=4 SV=1[more]
BLAST of CSPI03G18400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G18400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202393|gb|KGN57526.1|1.0e-47100.00hypothetical protein Csa_3G205290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G18400.1CSPI03G18400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G18400Csa3G205290Cucumber (Chinese Long) v2cpicuB120
CSPI03G18400CsaV3_3G018480Cucumber (Chinese Long) v3cpicucB144
CSPI03G18400Cucsa.244440Cucumber (Gy14) v1cgycpiB366
CSPI03G18400CsGy3G018270Cucumber (Gy14) v2cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G18400Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G18400Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G18400Bottle gourd (USVL1VR-Ls)cpilsiB188
CSPI03G18400Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G18400Melon (DHL92) v3.6.1cpimedB180
CSPI03G18400Melon (DHL92) v3.6.1cpimedB239
CSPI03G18400Cucumber (Gy14) v2cgybcpiB315
CSPI03G18400Silver-seed gourdcarcpiB0405
CSPI03G18400Silver-seed gourdcarcpiB0685
CSPI03G18400Cucumber (Chinese Long) v3cpicucB193
CSPI03G18400Watermelon (97103) v2cpiwmbB203
CSPI03G18400Watermelon (97103) v2cpiwmbB221
CSPI03G18400Wax gourdcpiwgoB283
CSPI03G18400Wax gourdcpiwgoB311
CSPI03G18400Wild cucumber (PI 183967)cpicpiB144
CSPI03G18400Cucumber (Gy14) v1cgycpiB333
CSPI03G18400Cucurbita maxima (Rimu)cmacpiB125
CSPI03G18400Cucurbita maxima (Rimu)cmacpiB326
CSPI03G18400Cucurbita maxima (Rimu)cmacpiB520
CSPI03G18400Cucurbita maxima (Rimu)cmacpiB705
CSPI03G18400Cucurbita moschata (Rifu)cmocpiB120
CSPI03G18400Cucurbita moschata (Rifu)cmocpiB315
CSPI03G18400Cucurbita moschata (Rifu)cmocpiB510
CSPI03G18400Cucurbita moschata (Rifu)cmocpiB698
CSPI03G18400Cucumber (Chinese Long) v2cpicuB165
CSPI03G18400Melon (DHL92) v3.5.1cpimeB185
CSPI03G18400Melon (DHL92) v3.5.1cpimeB241
CSPI03G18400Watermelon (Charleston Gray)cpiwcgB217
CSPI03G18400Watermelon (Charleston Gray)cpiwcgB237
CSPI03G18400Watermelon (97103) v1cpiwmB242
CSPI03G18400Watermelon (97103) v1cpiwmB271