Csa3G205290 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G205290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 13983386 .. 13985002 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTTATTAAACAGGCATGTTTTTTTTAAAGAAGATAGAAACTCCTTCACGAAAAAACACCAACCCTTTTCCTCAGTAAGCCTCTTCACCTTCTCCATGATTTCGATTACCACCTCCTTCAACCCTGATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTAACTCAATTCAACTAATAATTTCAAGCTATGTGCTTTGTTTCATGTTTCATCCTTCTTGTGTTTGATTTGGCATTGTGAAGCTGTAATGGTTATGTTTGTGAGTTTCCTTGTAAGATTCATTCATATTAGAGTTATAGTTATAAATCCTAAACCCTAAAAGTGGTACTCCATATTTGTGTGGAAGAAAGTAATGTACAATACTATGAACTGTATTGAAGGAATAAGAACATGCATGATGTTTTAGTTTAGGGTTCAACATGTGCATCCATAATATTATTGTGTTGCCCATTTGTATTGAACTATGACGTGTAAATGAAAGAACTTTGTTCATTTGATTATGATATATTAAGTTAAAAAACGCATGAATCTATTGGTTCACAATAATTGATTATTGTAAAAGGTAGTTATGTCTTGTTAGATTTTATTGTAGTTTGGTGAATTGAGTTTGAGGTGGTGTTTTGTTTATCTCCAAAGGTAAGTTCAGTCATCCATCTCTCAAGTCGTTCTTTCTCTCTCTTGTTTTTCTCATTGATTTTGTTTGTTTAATTTTTGATATCTATCCTTATTCCTCACTGTTGAATTTATTACATTACACAGAAGCTTGCTCCATCAATACAACCTTTATTAGTATGCTCAAAACTTGTTTGAGGAAATGTCGCATCTCAACAAAGTCTTAGCTTAAAATGAGTCTCAAAACTACAATTTTTCTTACATTACTACTTTAGATTCAATTTTTTACTGGTAAATTTTCAACTCATTTGCTATTAAAATGTGTTTATCCATGTGTTGTTGGTGGTTAATTTACATGTTTATGGCCGTTTTATGAGTTTCATGAGATTTTGTGTAAATTGAAAGAGTAAGGATTTCAACATCACTAAATTTCAATATAATTTGAGGATGTCAAAATATATGCTAAGCTATAAAAAAAAATGGTAGTCCAATGAGGGTCTCTAATGTCATTCTCCATCTTTGTCCAATTTTTGAACTTGACTTACTTTAATTGTAAAACGACAAGCAAACAAGAGGGTATCTTCTAACTACTTATGTGGATGATTTCTTTAATATTATAAAGTAAACTTATTGTTTTTTATGTGTTTGGTTGTACTTATAATATATTTATTTTTGAAATTATTGCTAATGATTAGGTTTAGAAATTGGTATAGATTAAGAATTGTGTTTGAAGGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGA

mRNA sequence

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGA

Coding sequence (CDS)

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGA

Protein sequence

MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEHCATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN*
Homology
[Close]
BLAST of Csa3G205290 vs. TrEMBL
Match: A0A0A0LBY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G205290 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.1e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
           MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 101
           CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN
Sbjct: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 100

[Close]
BLAST of Csa3G205290 vs. NCBI nr
Match: gi|700202393|gb|KGN57526.1| (hypothetical protein Csa_3G205290 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 7.3e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
           MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 101
           CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN
Sbjct: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 100

The following BLAST results are available for this feature:
BLAST of Csa3G205290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBY3_CUCSA5.1e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G205290 PE=4 SV=1[more]
BLAST of Csa3G205290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202393|gb|KGN57526.1|7.3e-49100.00hypothetical protein Csa_3G205290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G205290.1Csa3G205290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G205290CSPI03G18400Wild cucumber (PI 183967)cpicuB120
Csa3G205290Cucsa.244440Cucumber (Gy14) v1cgycuB350
Csa3G205290CsGy3G018270Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G205290Cucurbita maxima (Rimu)cmacuB128
Csa3G205290Cucurbita maxima (Rimu)cmacuB320
Csa3G205290Cucurbita maxima (Rimu)cmacuB513
Csa3G205290Cucurbita maxima (Rimu)cmacuB697
Csa3G205290Cucurbita moschata (Rifu)cmocuB117
Csa3G205290Cucurbita moschata (Rifu)cmocuB307
Csa3G205290Cucurbita moschata (Rifu)cmocuB504
Csa3G205290Cucurbita moschata (Rifu)cmocuB687
Csa3G205290Melon (DHL92) v3.5.1cumeB166
Csa3G205290Melon (DHL92) v3.5.1cumeB195
Csa3G205290Melon (DHL92) v3.5.1cumeB265
Csa3G205290Watermelon (Charleston Gray)cuwcgB211
Csa3G205290Watermelon (Charleston Gray)cuwcgB215
Csa3G205290Watermelon (Charleston Gray)cuwcgB230
Csa3G205290Watermelon (97103) v1cuwmB243
Csa3G205290Watermelon (97103) v1cuwmB270
Csa3G205290Cucurbita pepo (Zucchini)cpecuB205
Csa3G205290Cucurbita pepo (Zucchini)cpecuB242
Csa3G205290Cucurbita pepo (Zucchini)cpecuB389
Csa3G205290Bottle gourd (USVL1VR-Ls)culsiB189
Csa3G205290Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G205290Cucumber (Gy14) v2cgybcuB307
Csa3G205290Melon (DHL92) v3.6.1cumedB181
Csa3G205290Melon (DHL92) v3.6.1cumedB238
Csa3G205290Melon (DHL92) v3.6.1cumedB255
Csa3G205290Silver-seed gourdcarcuB0232
Csa3G205290Silver-seed gourdcarcuB0400
Csa3G205290Silver-seed gourdcarcuB0675
Csa3G205290Watermelon (97103) v2cuwmbB198
Csa3G205290Watermelon (97103) v2cuwmbB215
Csa3G205290Wax gourdcuwgoB283
Csa3G205290Wax gourdcuwgoB308
Csa3G205290Cucumber (Chinese Long) v2cucuB129
Csa3G205290Cucumber (Gy14) v1cgycuB320