Cucsa.213460 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.213460
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRibosomal protein S8 family protein
Locationscaffold01543 : 1225897 .. 1227565 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCCAAACCCTACGCCCATTCTTTGAAGCCGACGCCTCCATCTTCCATTCAGGTATATCTCCTCGCTAGGGTTCTCCCGTTTTTTCGTGCTCTTCTTATTGTGTATTTTGTTTTGATTTTTTTTCTTCTTCTGGATTTTGTTTCTGTTTTACTTTTGTTAGAAATCCATTGAAGTTTTAATTTGGAAGGATGGTGAGAGTTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGAAAACGACAGGTCATGATCAGGCCGTCTTCTAAAGTCATCATCAAGTTTCTTCTGGTTATGCAGAAGCACGGTTTGTTTCTTTGATTTGACTTCATCTTTGCAATTTCTTTTCTCTACGTCATCTCATCTCATCTTCTGTTTTTTGATGTTTAGGTTATATTGGTGAATTTGAGTTTGTCGATGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAAATTGAAGGTTGGACTGCTAGGTTGCTCCCTTCCAGACAGGTTAGTGCGTAATACCTTTCACTTTTGTGAAATGCGATTGTGAAATTTAGGGATTTCAATGGAGATGTCAATAGTTGTTAAATGATCTTGTCATTTAGATTGTCTTAGATTCTAAATCTGGCTAGTTGGATATCGTAGTAGATGCACATGAAAGAGTAGTATGAATGCTTATCCATTGATTAACAAGTGCTCTGAAGTGGCTGCTTAGTTTTGCGAACGTTTAAACCCACATTTTTtAAAGCTCGAAACATAACAAGGCGCAATAGTCTTATGTGAAGCATGCATGCTCCGTAAATGGAGTAAACGCGAGTAAGCATGGTTGGGGTGGAAATGTGAAaTAAAAaGCCCCAACCACAATTTTTtAAtCTTTGTTAATGCAACAAGCCTACTTTGGGATGGTTCTGTGGTCGTCCAGAGGGCTTTTAAAaTACTAGTTTAGATAAAaGTTTGGACTATTTtACTTTTGAATTATCTTTtATTTTCCATTGGAGgTGCAGGCTATGTAAAGATTTGTTTAGTAACATGATTTTTCAATATATGGTAATGATCTGTTTGATGAAATTCATAATATGCAGTTTGGATTCATTGTGCTGACAACATCTGCTGGAATTATGGATCACGAAGAAGCAAGAAGGAAGAATGTTGGAGGCAAAGTTCTTGGTTTCTTCTACTGAACATGGTTTTGAGCATCCATTATGGAGTTTTGACATAGCTTTCAAATAGTACTACATTTTCTCTCGGTAAAGAAAGATCCTTATCCTGTATTGATGATTAGATTTTGTGTTGCCAGTTTCTCATTTCTTAAGTTAATTCCAAGGAAGATTCTATTGTTTTCGTGAAGACGTTTTGGTTCTTTTAATTATATTGGAAGAGAACTAGTGCTTTTTAATTTCTTGCTACCTACTCTCCCAACTCTGTTTTCTGTCACTTGTGTTTTCAAGTTCAATAATAGTTATCTGAGAGACACCCGGAGCAGCAGCCCTTTTTAAAGCTTTACTCAAACTTGTAGAAATGTTATAATTTGGAGTCTTAGACTTGCACAGTTGTTTTAGAAATTAGACTGCAATGGATAAAAATTGAGCCCTAAAGCTTGAACCGAACA

mRNA sequence

TCTCCAAACCCTACGCCCATTCTTTGAAGCCGACGCCTCCATCTTCCATTCAGAAATCCATTGAAGTTTTAATTTGGAAGGATGGTGAGAGTTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGAAAACGACAGGTCATGATCAGGCCGTCTTCTAAAGTCATCATCAAGTTTCTTCTGGTTATGCAGAAGCACGGTTATATTGGTGAATTTGAGTTTGTCGATGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAAATTGAAGGTTGGACTGCTAGGTTGCTCCCTTCCAGACAGGTTAGTTTTGGATTCATTGTGCTGACAACATCTGCTGGAATTATGGATCACGAAGAAGCAAGAAGGAAGAATGTTGGAGGCAAAGTTCTTGGTTTCTTCTACTGAACATGGTTTTGAGCATCCATTATGGAGTTTTGACATAGCTTTCAAATAGTACTACATTTTCTCTCGGTAAAGAAAGATCCTTATCCTGTATTGATGATTAGATTTTGTGTTGCCAGTTTCTCATTTCTTAAGTTAATTCCAAGGAAGATTCTATTGTTTTCGTGAAGACGTTTTGGTTCTTTTAATTATATTGGAAGAGAACTAGTGCTTTTTAATTTCTTGCTACCTACTCTCCCAACTCTGTTTTCTGTCACTTGTGTTTTCAAGTTCAATAATAGTTATCTGAGAGACACCCGGAGCAGCAGCCCTTTTTAAAGCTTTActcaaacttgtagaaatgttataatttggagtcttagacttgcacagttgttttagaaattagactgcaatggataaaaattgagccctaaagcttgaaccgaaca

Coding sequence (CDS)

ATGGTGAGAGTTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGAAAACGACAGGTCATGATCAGGCCGTCTTCTAAAGTCATCATCAAGTTTCTTCTGGTTATGCAGAAGCACGGTTATATTGGTGAATTTGAGTTTGTCGATGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAAATTGAAGGTTGGACTGCTAGGTTGCTCCCTTCCAGACAGGTTAGTTTTGGATTCATTGTGCTGACAACATCTGCTGGAATTATGGATCACGAAGAAGCAAGAAGGAAGAATGTTGGAGGCAAAGTTCTTGGTTTCTTCTACTGA

Protein sequence

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY*
Homology
[Close]
BLAST of Cucsa.213460 vs. Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 252.3 bits (643), Expect = 3.0e-66
Identity = 126/132 (95.45%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FG+IVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 251.9 bits (642), Expect = 3.9e-66
Identity = 126/132 (95.45%), Postives = 129/132 (97.73%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FGFIVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGFIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 250.8 bits (639), Expect = 8.6e-66
Identity = 125/132 (94.70%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FG+IVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 247.7 bits (631), Expect = 7.3e-65
Identity = 124/132 (93.94%), Postives = 129/132 (97.73%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQ  FG+IVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQ--FGYIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 234.6 bits (597), Expect = 6.4e-61
Identity = 117/132 (88.64%), Postives = 124/132 (93.94%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFE+VDDHRSGK
Sbjct: 1   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQ  FG+IVLTTSAGIMDHEEAR+
Sbjct: 61  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQ--FGYIVLTTSAGIMDHEEARK 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. TrEMBL
Match: A0A0A0KZP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608140 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.0e-65
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 85  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 144

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FGFIVLTTSAGIMDHEEARR
Sbjct: 145 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGFIVLTTSAGIMDHEEARR 204

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 205 KNVGGKVLGFFY 214

[Close]
BLAST of Cucsa.213460 vs. TrEMBL
Match: Q9SBL9_CITLA (Wrp15a OS=Citrullus lanatus GN=wrp15a PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.0e-65
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FGFIVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGFIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. TrEMBL
Match: A0A0B0MX15_GOSAR (40S ribosomal S15a-1-like protein OS=Gossypium arboreum GN=F383_06727 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 128/132 (96.97%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FG+IVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. TrEMBL
Match: A0A0D2P107_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 128/132 (96.97%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFE+VDDHRSGK
Sbjct: 7   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FG+IVLTTSAGIMDHEEARR
Sbjct: 67  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARR 126

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 127 KNVGGKVLGFFY 136

[Close]
BLAST of Cucsa.213460 vs. TrEMBL
Match: A0A0D2VKJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G265000 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 128/132 (96.97%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFE+VDDHRSGK
Sbjct: 111 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 170

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FG+IVLTTSAGIMDHEEARR
Sbjct: 171 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARR 230

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 231 KNVGGKVLGFFY 240

[Close]
BLAST of Cucsa.213460 vs. TAIR10
Match: AT1G07770.1 (AT1G07770.1 ribosomal protein S15A)

HSP 1 Score: 252.3 bits (643), Expect = 1.7e-67
Identity = 126/132 (95.45%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FG+IVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. TAIR10
Match: AT5G59850.1 (AT5G59850.1 Ribosomal protein S8 family protein)

HSP 1 Score: 252.3 bits (643), Expect = 1.7e-67
Identity = 126/132 (95.45%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FG+IVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. TAIR10
Match: AT3G46040.1 (AT3G46040.1 ribosomal protein S15A D)

HSP 1 Score: 251.9 bits (642), Expect = 2.2e-67
Identity = 126/132 (95.45%), Postives = 129/132 (97.73%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FGFIVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGFIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. TAIR10
Match: AT2G39590.1 (AT2G39590.1 Ribosomal protein S8 family protein)

HSP 1 Score: 234.6 bits (597), Expect = 3.6e-62
Identity = 117/132 (88.64%), Postives = 124/132 (93.94%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFE+VDDHRSGK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQ  FG+IVLTTSAGIMDHEEAR+
Sbjct: 67  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQ--FGYIVLTTSAGIMDHEEARK 126

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 127 KNVGGKVLGFFY 136

[Close]
BLAST of Cucsa.213460 vs. TAIR10
Match: AT4G29430.1 (AT4G29430.1 ribosomal protein S15A E)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-33
Identity = 67/127 (52.76%), Postives = 94/127 (74.02%), Query Frame = 1 

Query: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVEL 65
           +LNDAL+++ NAE+RGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARRKNVGG 125
            GR+N C  ++ R DV  KEIE +T R LP+RQ  +G++V+TT  GI+DHEEA ++NVGG
Sbjct: 65  QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQ--WGYVVITTPDGILDHEEAIKRNVGG 124

Query: 126 KVLGFFY 133
           +VLGFFY
Sbjct: 125 QVLGFFY 129

[Close]
BLAST of Cucsa.213460 vs. NCBI nr
Match: gi|449453772|ref|XP_004144630.1| (PREDICTED: 40S ribosomal protein S15a-1 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 4.3e-65
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FGFIVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGFIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. NCBI nr
Match: gi|700199780|gb|KGN54938.1| (hypothetical protein Csa_4G608140 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 4.3e-65
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 85  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 144

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FGFIVLTTSAGIMDHEEARR
Sbjct: 145 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGFIVLTTSAGIMDHEEARR 204

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 205 KNVGGKVLGFFY 214

[Close]
BLAST of Cucsa.213460 vs. NCBI nr
Match: gi|951042374|ref|XP_014518151.1| (PREDICTED: 40S ribosomal protein S15a-1 [Vigna radiata var. radiata])

HSP 1 Score: 254.6 bits (649), Expect = 9.5e-65
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FG+IVLTTSAGIMDHEEARR
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARR 120

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 121 KNVGGKVLGFFY 130

[Close]
BLAST of Cucsa.213460 vs. NCBI nr
Match: gi|657943799|ref|XP_008370948.1| (PREDICTED: 40S ribosomal protein S15a-1-like isoform X1 [Malus domestica])

HSP 1 Score: 254.2 bits (648), Expect = 1.2e-64
Identity = 124/131 (94.66%), Postives = 130/131 (99.24%), Query Frame = 1 

Query: 2   VRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKI 61
           +RVSVLNDALKSMYNAEKRGKRQVMIRPSSKVI+KFLLVMQKHGYIGEFE+VDDHR+GKI
Sbjct: 1   MRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIVKFLLVMQKHGYIGEFEYVDDHRAGKI 60

Query: 62  VVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARRK 121
           VVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ+ FG+IVLTTSAGIMDHEEARRK
Sbjct: 61  VVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQLQFGYIVLTTSAGIMDHEEARRK 120

Query: 122 NVGGKVLGFFY 133
           NVGGKVLGFFY
Sbjct: 121 NVGGKVLGFFY 131

[Close]
BLAST of Cucsa.213460 vs. NCBI nr
Match: gi|763752780|gb|KJB20168.1| (hypothetical protein B456_003G136100 [Gossypium raimondii])

HSP 1 Score: 253.4 bits (646), Expect = 2.1e-64
Identity = 128/132 (96.97%), Postives = 130/132 (98.48%), Query Frame = 1 

Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFE+VDDHRSGK
Sbjct: 7   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQVSFGFIVLTTSAGIMDHEEARR 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ  FG+IVLTTSAGIMDHEEARR
Sbjct: 67  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--FGYIVLTTSAGIMDHEEARR 126

Query: 121 KNVGGKVLGFFY 133
           KNVGGKVLGFFY
Sbjct: 127 KNVGGKVLGFFY 136

The following BLAST results are available for this feature:
BLAST of Cucsa.213460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R15A1_ARATH3.0e-6695.4540S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2[more]
R15A4_ARATH3.9e-6695.4540S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3[more]
RS15A_BRANA8.6e-6694.7040S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3[more]
RS15A_DAUCA7.3e-6593.9440S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3[more]
R15A3_ARATH6.4e-6188.6440S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2[more]
BLAST of Cucsa.213460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZP3_CUCSA3.0e-6598.48Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608140 PE=3 SV=1[more]
Q9SBL9_CITLA3.0e-6598.48Wrp15a OS=Citrullus lanatus GN=wrp15a PE=2 SV=1[more]
A0A0B0MX15_GOSAR1.5e-6496.9740S ribosomal S15a-1-like protein OS=Gossypium arboreum GN=F383_06727 PE=3 SV=1[more]
A0A0D2P107_GOSRA1.5e-6496.97Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1[more]
A0A0D2VKJ6_GOSRA1.5e-6496.97Uncharacterized protein OS=Gossypium raimondii GN=B456_013G265000 PE=3 SV=1[more]
BLAST of Cucsa.213460 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07770.11.7e-6795.45 ribosomal protein S15A[more]
AT5G59850.11.7e-6795.45 Ribosomal protein S8 family protein[more]
AT3G46040.12.2e-6795.45 ribosomal protein S15A D[more]
AT2G39590.13.6e-6288.64 Ribosomal protein S8 family protein[more]
AT4G29430.12.7e-3352.76 ribosomal protein S15A E[more]
BLAST of Cucsa.213460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453772|ref|XP_004144630.1|4.3e-6598.48PREDICTED: 40S ribosomal protein S15a-1 [Cucumis sativus][more]
gi|700199780|gb|KGN54938.1|4.3e-6598.48hypothetical protein Csa_4G608140 [Cucumis sativus][more]
gi|951042374|ref|XP_014518151.1|9.5e-6597.73PREDICTED: 40S ribosomal protein S15a-1 [Vigna radiata var. radiata][more]
gi|657943799|ref|XP_008370948.1|1.2e-6494.66PREDICTED: 40S ribosomal protein S15a-1-like isoform X1 [Malus domestica][more]
gi|763752780|gb|KJB20168.1|2.1e-6496.97hypothetical protein B456_003G136100 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_S8
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0006412 translation
cellular_component GO:0005618 cell wall
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.213460.1Cucsa.213460.1mRNA
Cucsa.213460.3Cucsa.213460.3mRNA
Cucsa.213460.2Cucsa.213460.2mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.213460Cla008282Watermelon (97103) v1cgywmB409
Cucsa.213460Csa1G481220Cucumber (Chinese Long) v2cgycuB315
Cucsa.213460MELO3C020704Melon (DHL92) v3.5.1cgymeB376
Cucsa.213460ClCG03G001910Watermelon (Charleston Gray)cgywcgB389
Cucsa.213460CSPI01G22470Wild cucumber (PI 183967)cgycpiB328
Cucsa.213460CmaCh13G001560Cucurbita maxima (Rimu)cgycmaB0613
Cucsa.213460CmaCh01G005660Cucurbita maxima (Rimu)cgycmaB0615
Cucsa.213460CmoCh13G001600Cucurbita moschata (Rifu)cgycmoB0615
Cucsa.213460CmoCh01G005930Cucurbita moschata (Rifu)cgycmoB0617
Cucsa.213460Lsi02G013940Bottle gourd (USVL1VR-Ls)cgylsiB359
Cucsa.213460Cp4.1LG20g08830Cucurbita pepo (Zucchini)cgycpeB0589
Cucsa.213460Cp4.1LG02g13100Cucurbita pepo (Zucchini)cgycpeB0591
Cucsa.213460MELO3C020704.2Melon (DHL92) v3.6.1cgymedB374
Cucsa.213460CsaV3_1G033650Cucumber (Chinese Long) v3cgycucB333
Cucsa.213460Cla97C03G052920Watermelon (97103) v2cgywmbB391
Cucsa.213460Bhi08G000332Wax gourdcgywgoB441
Cucsa.213460Carg12338Silver-seed gourdcarcgyB0512
Cucsa.213460Carg21032Silver-seed gourdcarcgyB0819
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.213460Melon (DHL92) v3.6.1cgymedB372
Cucsa.213460Silver-seed gourdcarcgyB0360
Cucsa.213460Silver-seed gourdcarcgyB0361
Cucsa.213460Watermelon (97103) v2cgywmbB388
Cucsa.213460Wax gourdcgywgoB436
Cucsa.213460Cucurbita maxima (Rimu)cgycmaB0617
Cucsa.213460Cucurbita moschata (Rifu)cgycmoB0618
Cucsa.213460Watermelon (Charleston Gray)cgywcgB385
Cucsa.213460Watermelon (Charleston Gray)cgywcgB386
Cucsa.213460Watermelon (97103) v1cgywmB412
Cucsa.213460Watermelon (97103) v1cgywmB414
Cucsa.213460Bottle gourd (USVL1VR-Ls)cgylsiB356