Cp4.1LG20g08830 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g08830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein
LocationCp4.1LG20 : 7097064 .. 7098900 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGCCCAACTGAGAGAGCGAGGGTTTTCGTCTCCAGGATTTATAAACTTCTTTAGCCTCAAACCCTAGCGCCCTTTCTTTCTTCTCATAGTTGAAGCTGACGGACGCCTCCTTCTGCGATTCAGGTACATCTCCTCCTTCTCTTCGTCTCGTTTCAGATCAACCAGTACTGTATGAATATGTTTCTGTTCTTTTCTTTTTTTGGATTGATTCAGCTGTTGAATGATCTTCGCAATGACTAGTTCGTCGATGGGGATTCCATTTAATTGTTGAATGATTTCAAATGAAATGGTGTTTAGGTTTTAGTGGAGTGGGAGTGAGTTCTTACTGGAATTTTAGTATATTTTATAGCAACCGACTGTTAGTGGATTGGAGTTTTTCGAGCTTTTGTGGTAAATTGTATGAATTTCTTTATCATAGTTGTTGATTTCGTCTGGTTTTGTCTATCTTTTTCTCTCGCCGGAAACTCCAGGAAGCTTTAATTTTGAAGGATGGTCAGAATTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCGTCCTCCAAAGTGATCATAAAGTTTCTGATGGTGATGCAGAAGCATGGTTCGTTTGTTTTCTTCACCTCCTCTATGGTTTGACTTCATTTTAAACAATTTCTCCGGAGGTTATCTAATTTTATCTTTTTTGCTTTAATATTTAGGATACATTGGGGAATTTGAGTATGTTGATGATCATAGATCTGGGAAAATTGTTGTTGAACTGAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTCGATGTGGGTGTTAAGGAAATTGAAGGCTGGACTGCTAGGCTGCTCCCATCCAGACAGGTTAGTGTTCGATCCCTGTTACTTTTGTTAAATGTGATCTTGAAGTTCGTCATTCGAAATTTACCCGTATTGAAAGTTCAGTAATTTGGTTGATGCCAATGACCGAAATTGAGTCTCTGTTTCCCTCCCTTTCCTGCTAGGGTTGGAAATCAATTCTCGTTGGGTTTCTTAAATAGGGTCAAAATCAGTGCTTTGAATCATTTTTAGTGAACCCGTACTTGTTCCATAGAAGTCGAGGCATTTTGAATTCTTTGTCGATACGGACAAAGTCAAGGGACCCTGAAACCGGCTCCTTAGCTATTACGTTCCAGAGTCATGTAGAACAGACATTAACCGTCCGAACATGGGACCTTCATTTTCTTAGATGCTAAATCAGCTACTTGTGTTGAATACATGAATAGAGTCGTAGAGCTTTTTAATATATCTTCTATTTTCACATGTGGGTATTGACTGTATAGAGATTTGTTGAGTAACGTGGCCTTCGAAAACTTGTTAATGATCTGTTTGATGAAATTGAAATCTGCAGTTTGGATTCATCGTGCTGACAACATCTGCGGGAATTATGGATCATGAAGAAGCTAGAAGGAAGAATGTTGGAGGTAAAGTTCTTGGTTTCTTCTACTGAACATGGTTTTGAGTATCCATTGTGGAGTTTTGACATAGCTTTCAAATACTACTCTACATTTTGTCGGTAAAGAATGATGTTATTCTGTAATGATTAGATTTTGGTCGTCTCTTAAGTTAATTCCAATAGAATATTTATTGTTTTGGTGAAGACATTTTGGTTTTTAGTTATATTGGAAGAGAACTAGTGCTTTTTTATTCCTTCTGAGTTTCTTTCTATATGGTATACGCACTACTACTTCAATTTTGATATCTCTCACTTGAATTTGAAGTTCAATAATAGATCTCTTTGAGACCAAATTTCCTTATAAAACGAGAAATTACACTTTTT

mRNA sequence

TAGGCCCAACTGAGAGAGCGAGGGTTTTCGTCTCCAGGATTTATAAACTTCTTTAGCCTCAAACCCTAGCGCCCTTTCTTTCTTCTCATAGTTGAAGCTGACGGACGCCTCCTTCTGCGATTCAGGAAGCTTTAATTTTGAAGGATGGTCAGAATTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCGTCCTCCAAAGTGATCATAAAGTTTCTGATGGTGATGCAGAAGCATGGATACATTGGGGAATTTGAGTATGTTGATGATCATAGATCTGGGAAAATTGTTGTTGAACTGAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTCGATGTGGGTGTTAAGGAAATTGAAGGCTGGACTGCTAGGCTGCTCCCATCCAGACAGTTTGGATTCATCGTGCTGACAACATCTGCGGGAATTATGGATCATGAAGAAGCTAGAAGGAAGAATGTTGGAGGTAAAGTTCTTGGTTTCTTCTACTGAACATGGTTTTGAGTATCCATTGTGGAGTTTTGACATAGCTTTCAAATACTACTCTACATTTTGTCGGTAAAGAATGATGTTATTCTGTAATGATTAGATTTTGGTCGTCTCTTAAGTTAATTCCAATAGAATATTTATTGTTTTGGTGAAGACATTTTGGTTTTTAGTTATATTGGAAGAGAACTAGTGCTTTTTTATTCCTTCTGAGTTTCTTTCTATATGGTATACGCACTACTACTTCAATTTTGATATCTCTCACTTGAATTTGAAGTTCAATAATAGATCTCTTTGAGACCAAATTTCCTTATAAAACGAGAAATTACACTTTTT

Coding sequence (CDS)

ATGGTCAGAATTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCGTCCTCCAAAGTGATCATAAAGTTTCTGATGGTGATGCAGAAGCATGGATACATTGGGGAATTTGAGTATGTTGATGATCATAGATCTGGGAAAATTGTTGTTGAACTGAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTCGATGTGGGTGTTAAGGAAATTGAAGGCTGGACTGCTAGGCTGCTCCCATCCAGACAGTTTGGATTCATCGTGCTGACAACATCTGCGGGAATTATGGATCATGAAGAAGCTAGAAGGAAGAATGTTGGAGGTAAAGTTCTTGGTTTCTTCTACTGA

Protein sequence

MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Homology
[Close]
BLAST of Cp4.1LG20g08830 vs. Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-69
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-69
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 261.9 bits (668), Expect = 3.7e-69
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 259.6 bits (662), Expect = 1.8e-68
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 245.4 bits (625), Expect = 3.5e-64
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 1   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 61  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. TrEMBL
Match: I3SJY8_MEDTR (Ribosomal protein S8 OS=Medicago truncatula GN=MTR_1g105415 PE=2 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 6.3e-68
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. TrEMBL
Match: V4LR60_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10002722mg PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. TrEMBL
Match: R0GPC4_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010626mg PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. TrEMBL
Match: A0A0D2UWX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-67
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. TrEMBL
Match: V4KEF8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009092mg PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-67
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
            GGKVLGFFY
Sbjct: 121 AGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. TAIR10
Match: AT1G07770.1 (AT1G07770.1 ribosomal protein S15A)

HSP 1 Score: 263.5 bits (672), Expect = 7.1e-71
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. TAIR10
Match: AT5G59850.1 (AT5G59850.1 Ribosomal protein S8 family protein)

HSP 1 Score: 263.5 bits (672), Expect = 7.1e-71
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. TAIR10
Match: AT3G46040.1 (AT3G46040.1 ribosomal protein S15A D)

HSP 1 Score: 263.1 bits (671), Expect = 9.2e-71
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. TAIR10
Match: AT2G39590.1 (AT2G39590.1 Ribosomal protein S8 family protein)

HSP 1 Score: 245.4 bits (625), Expect = 2.0e-65
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 67  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

[Close]
BLAST of Cp4.1LG20g08830 vs. TAIR10
Match: AT4G29430.1 (AT4G29430.1 ribosomal protein S15A E)

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-36
Identity = 67/125 (53.60%), Postives = 94/125 (75.20%), Query Frame = 1 

Query: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65
           +LNDAL+++ NAE+RGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKV 125
            GR+N C  ++ R DV  KEIE +T R LP+RQ+G++V+TT  GI+DHEEA ++NVGG+V
Sbjct: 65  QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124

Query: 126 LGFFY 131
           LGFFY
Sbjct: 125 LGFFY 129

[Close]
BLAST of Cp4.1LG20g08830 vs. NCBI nr
Match: gi|922370341|ref|XP_013457334.1| (ribosomal protein S8 [Medicago truncatula])

HSP 1 Score: 264.6 bits (675), Expect = 9.0e-68
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. NCBI nr
Match: gi|944243333|gb|KQL07641.1| (hypothetical protein SETIT_002868mg [Setaria italica])

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHR+GK
Sbjct: 88  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGK 147

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 148 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 207

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 208 VGGKVLGFFY 217

[Close]
BLAST of Cp4.1LG20g08830 vs. NCBI nr
Match: gi|15223001|ref|NP_172256.1| (40S ribosomal protein S15a-1 [Arabidopsis thaliana])

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG20g08830 vs. NCBI nr
Match: gi|763816942|gb|KJB83794.1| (hypothetical protein B456_013G265000 [Gossypium raimondii])

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 111 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 170

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 171 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 230

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 231 VGGKVLGFFY 240

[Close]
BLAST of Cp4.1LG20g08830 vs. NCBI nr
Match: gi|567154433|ref|XP_006417777.1| (hypothetical protein EUTSA_v10009092mg [Eutrema salsugineum])

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
            GGKVLGFFY
Sbjct: 121 AGGKVLGFFY 130

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g08830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R15A1_ARATH1.3e-6998.4640S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2[more]
R15A4_ARATH1.6e-6998.4640S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3[more]
RS15A_BRANA3.7e-6997.6940S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3[more]
RS15A_DAUCA1.8e-6896.1540S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3[more]
R15A3_ARATH3.5e-6490.7740S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2[more]
BLAST of Cp4.1LG20g08830 vs. TrEMBL
Match NameE-valueIdentityDescription
I3SJY8_MEDTR6.3e-6898.46Ribosomal protein S8 OS=Medicago truncatula GN=MTR_1g105415 PE=2 SV=1[more]
V4LR60_EUTSA1.4e-6798.46Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10002722mg PE=3 SV=1[more]
R0GPC4_9BRAS1.4e-6798.46Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010626mg PE=3 SV=1[more]
A0A0D2UWX7_GOSRA1.4e-6797.69Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1[more]
V4KEF8_EUTSA1.4e-6798.46Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009092mg PE=3 SV=1[more]
BLAST of Cp4.1LG20g08830 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07770.17.1e-7198.46 ribosomal protein S15A[more]
AT5G59850.17.1e-7198.46 Ribosomal protein S8 family protein[more]
AT3G46040.19.2e-7198.46 ribosomal protein S15A D[more]
AT2G39590.12.0e-6590.77 Ribosomal protein S8 family protein[more]
AT4G29430.12.5e-3653.60 ribosomal protein S15A E[more]
BLAST of Cp4.1LG20g08830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|922370341|ref|XP_013457334.1|9.0e-6898.46ribosomal protein S8 [Medicago truncatula][more]
gi|944243333|gb|KQL07641.1|2.0e-6797.69hypothetical protein SETIT_002868mg [Setaria italica][more]
gi|15223001|ref|NP_172256.1|2.0e-6798.4640S ribosomal protein S15a-1 [Arabidopsis thaliana][more]
gi|763816942|gb|KJB83794.1|2.0e-6797.69hypothetical protein B456_013G265000 [Gossypium raimondii][more]
gi|567154433|ref|XP_006417777.1|2.0e-6798.46hypothetical protein EUTSA_v10009092mg [Eutrema salsugineum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_S8
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0006412 translation
cellular_component GO:0005618 cell wall
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g08830.1Cp4.1LG20g08830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000630Ribosomal protein S8HAMAPMF_01302_ARibosomal_S8_Acoord: 2..130
score: 32
IPR000630Ribosomal protein S8PANTHERPTHR1175840S RIBOSOMAL PROTEIN S15Acoord: 1..130
score: 7.9E
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 7..130
score: 2.4
IPR000630Ribosomal protein S8PROSITEPS00053RIBOSOMAL_S8coord: 100..117
scor
IPR000630Ribosomal protein S8unknownSSF56047Ribosomal protein S8coord: 4..130
score: 3.79
NoneNo IPR availableGENE3DG3DSA:3.30.1370.30coord: 1..68
score: 2.8
NoneNo IPR availableGENE3DG3DSA:3.30.1490.10coord: 70..128
score: 1.4
NoneNo IPR availablePANTHERPTHR11758:SF16RIBOSOMAL PROTEIN S15Acoord: 1..130
score: 7.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g08830Cucsa.213460Cucumber (Gy14) v1cgycpeB0589
Cp4.1LG20g08830CmaCh13G001560Cucurbita maxima (Rimu)cmacpeB235
Cp4.1LG20g08830CmaCh01G005660Cucurbita maxima (Rimu)cmacpeB483
Cp4.1LG20g08830CmoCh01G005930Cucurbita moschata (Rifu)cmocpeB441
Cp4.1LG20g08830CmoCh13G001600Cucurbita moschata (Rifu)cmocpeB202
Cp4.1LG20g08830Cla008282Watermelon (97103) v1cpewmB507
Cp4.1LG20g08830Csa1G481220Cucumber (Chinese Long) v2cpecuB507
Cp4.1LG20g08830MELO3C020704Melon (DHL92) v3.5.1cpemeB479
Cp4.1LG20g08830ClCG03G001910Watermelon (Charleston Gray)cpewcgB467
Cp4.1LG20g08830CSPI01G22470Wild cucumber (PI 183967)cpecpiB507
Cp4.1LG20g08830Lsi02G013940Bottle gourd (USVL1VR-Ls)cpelsiB422
Cp4.1LG20g08830MELO3C020704.2Melon (DHL92) v3.6.1cpemedB561
Cp4.1LG20g08830CsaV3_1G033650Cucumber (Chinese Long) v3cpecucB0625
Cp4.1LG20g08830Bhi08G000332Wax gourdcpewgoB0636
Cp4.1LG20g08830CsGy1G022050Cucumber (Gy14) v2cgybcpeB071
Cp4.1LG20g08830Carg21032Silver-seed gourdcarcpeB1022
Cp4.1LG20g08830Carg12338Silver-seed gourdcarcpeB0620
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g08830Cp4.1LG02g13100Cucurbita pepo (Zucchini)cpecpeB432
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g08830Cucurbita pepo (Zucchini)cpecpeB296
Cp4.1LG20g08830Cucurbita pepo (Zucchini)cpecpeB386
Cp4.1LG20g08830Cucurbita pepo (Zucchini)cpecpeB388
Cp4.1LG20g08830Cucurbita pepo (Zucchini)cpecpeB413
Cp4.1LG20g08830Cucurbita pepo (Zucchini)cpecpeB439
Cp4.1LG20g08830Cucurbita pepo (Zucchini)cpecpeB444
Cp4.1LG20g08830Cucurbita maxima (Rimu)cmacpeB636
Cp4.1LG20g08830Cucurbita moschata (Rifu)cmocpeB586
Cp4.1LG20g08830Bottle gourd (USVL1VR-Ls)cpelsiB412
Cp4.1LG20g08830Watermelon (Charleston Gray)cpewcgB461
Cp4.1LG20g08830Watermelon (Charleston Gray)cpewcgB462
Cp4.1LG20g08830Watermelon (97103) v1cpewmB525
Cp4.1LG20g08830Watermelon (97103) v1cpewmB526
Cp4.1LG20g08830Melon (DHL92) v3.5.1cpemeB468
Cp4.1LG20g08830Melon (DHL92) v3.5.1cpemeB469
Cp4.1LG20g08830Cucumber (Gy14) v2cgybcpeB536
Cp4.1LG20g08830Cucumber (Gy14) v2cgybcpeB669
Cp4.1LG20g08830Cucumber (Gy14) v2cgybcpeB817
Cp4.1LG20g08830Melon (DHL92) v3.6.1cpemedB551
Cp4.1LG20g08830Melon (DHL92) v3.6.1cpemedB571
Cp4.1LG20g08830Silver-seed gourdcarcpeB0469
Cp4.1LG20g08830Cucumber (Chinese Long) v3cpecucB0645
Cp4.1LG20g08830Cucumber (Chinese Long) v3cpecucB0651
Cp4.1LG20g08830Wax gourdcpewgoB0628