Cp4.1LG02g13100 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g13100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein
LocationCp4.1LG02 : 11349044 .. 11350221 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTGGAGTTTTTGCTTTTGGTTTGCTTGTTCTCGTAGACATGTTTTGGATGCGATGATCAAGGATAGGTTTTAACGTTTTTGTGGTTTTTTTTTTTTTTTTTTCCTCTCTTTCTCTGCTTCATCTGGAAACCATATGAAGCTTTAATTTGGAAGGATGGTGAGAATTAGTGTCTTGAACGACGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATGGTTATGCAGAAGCACGGTTTGATTGCTTACTTCACCACCTCTTTGATTTGACTTCACGGCAGCAATTTCCCCCGAGGTCCTGATTATCATTAATTTTTGTTTTCATAGGATATATTGGGGAATTTGAGTATGTCGACGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGTAGGCTGAACAAGTGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTCAAGGAAATTGAAGGCTGGACTGCTAGGCTGCTCCCTTCCAGACAGGTTAGTTTTCAAAAACTGTTAATTTTCTAAAACGTAATACTTGAGAGTTTTGACTCTCCAAATTTACCTGTAATGGAATTCTTGTCTCTTAGATGATCTTTTAGAGGGTGAATCAGTCTACTTATGTAATGGATTAGATGCGTATATTTCCAATGGCTACAAAGTTCATATTGCATTGCTCTAAACTAGCAGTGCTTAGTTCTTCTTCAAATGGTTCTGTAATCTTATTTATAAAATTCATGTCTGCAGTTTGGATTCATTGTGCTGACAACATCTGCGGGAATTATGGATCATGAAGAGGCTAGAAGGAAGAACGTTGGAGGGAAAGTCCTTGGTTTCTTCTATTGAACATGGTTTTGAGCCACACCCATTATGGAATTTTGACATAGCTTTCAAATAGTACTATATTTTCTCGGTAAAGAAAGATCGTATCCTGTAATAACTAGATTTTGTGTTGCCAGTAATTTAATTCCAAGATAATTTGATTGTTTTGGTTAAGACATTTTGGCTTTTTTAAATTATATTGGAAGAGAACCATTGCTTTTTGAATCCCTCAAGTGTGACACTTTGTTCTCTGTTACATTTAAGTTCTGAAGTTCTATCAAATTTTGTTTGAGCAGGCCGGTTTATAAA

mRNA sequence

ATGTGTTGGAGTTTTTGCTTTTGGTTTGCTTGTTCTCGTAGACATGTTTTGGATGCGATGATCAAGGATAGGATGGTGAGAATTAGTGTCTTGAACGACGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATGGTTATGCAGAAGCACGGATATATTGGGGAATTTGAGTATGTCGACGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGTAGGCTGAACAAGTGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTCAAGGAAATTGAAGGCTGGACTGCTAGGCTGCTCCCTTCCAGACAGTTTGGATTCATTGTGCTGACAACATCTGCGGGAATTATGGATCATGAAGAGGCTAGAAGGAAGAACGTTGGAGGGAAAGTCCTTGGTTTCTTCTATTGAACATGGTTTTGAGCCACACCCATTATGGAATTTTGACATAGCTTTCAAATAGTACTATATTTTCTCGGTAAAGAAAGATCGTATCCTGTAATAACTAGATTTTGTGTTGCCAGTAATTTAATTCCAAGATAATTTGATTGTTTTGGTTAAGACATTTTGGCTTTTTTAAATTATATTGGAAGAGAACCATTGCTTTTTGAATCCCTCAAGTGTGACACTTTGTTCTCTGTTACATTTAAGTTCTGAAGTTCTATCAAATTTTGTTTGAGCAGGCCGGTTTATAAA

Coding sequence (CDS)

ATGTGTTGGAGTTTTTGCTTTTGGTTTGCTTGTTCTCGTAGACATGTTTTGGATGCGATGATCAAGGATAGGATGGTGAGAATTAGTGTCTTGAACGACGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATGGTTATGCAGAAGCACGGATATATTGGGGAATTTGAGTATGTCGACGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGTAGGCTGAACAAGTGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTCAAGGAAATTGAAGGCTGGACTGCTAGGCTGCTCCCTTCCAGACAGTTTGGATTCATTGTGCTGACAACATCTGCGGGAATTATGGATCATGAAGAGGCTAGAAGGAAGAACGTTGGAGGGAAAGTCCTTGGTTTCTTCTATTGA

Protein sequence

MCWSFCFWFACSRRHVLDAMIKDRMVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Homology
[Close]
BLAST of Cp4.1LG02g13100 vs. Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 263.5 bits (672), Expect = 1.5e-69
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG02g13100 vs. Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 263.1 bits (671), Expect = 1.9e-69
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVRISVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG02g13100 vs. Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 261.9 bits (668), Expect = 4.3e-69
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVRISVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG02g13100 vs. Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-68
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG02g13100 vs. Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 245.4 bits (625), Expect = 4.2e-64
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 1   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 60

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 61  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 120

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG02g13100 vs. TrEMBL
Match: A0A0D2P107_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.6e-68
Identity = 128/132 (96.97%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 23  DRMVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRS 82
           +RMVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRS
Sbjct: 5   ERMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRS 64

Query: 83  GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARR 142
           GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARR
Sbjct: 65  GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 124

Query: 143 KNVGGKVLGFFY 155
           KNVGGKVLGFFY
Sbjct: 125 KNVGGKVLGFFY 136

[Close]
BLAST of Cp4.1LG02g13100 vs. TrEMBL
Match: A0A0B0MTM3_GOSAR (40S ribosomal S15a-1-like protein OS=Gossypium arboreum GN=F383_28011 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.4e-68
Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 1 

Query: 24  RMVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSG 83
           RMVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSG
Sbjct: 39  RMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSG 98

Query: 84  KIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRK 143
           KIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRK
Sbjct: 99  KIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRK 158

Query: 144 NVGGKVLGFFY 155
           NVGGKVLGFFY
Sbjct: 159 NVGGKVLGFFY 169

[Close]
BLAST of Cp4.1LG02g13100 vs. TrEMBL
Match: T1LHD1_TRIUA (Uncharacterized protein OS=Triticum urartu PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.7e-68
Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 1 

Query: 24  RMVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSG 83
           RMVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSG
Sbjct: 3   RMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSG 62

Query: 84  KIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRK 143
           KIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRK
Sbjct: 63  KIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRK 122

Query: 144 NVGGKVLGFFY 155
           NVGGKVLGFFY
Sbjct: 123 NVGGKVLGFFY 133

[Close]
BLAST of Cp4.1LG02g13100 vs. TrEMBL
Match: A0A0D2VKJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G265000 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.4e-68
Identity = 131/153 (85.62%), Postives = 137/153 (89.54%), Query Frame = 1 

Query: 2   CWSFCFWFACSRRHVLDAMIKDRMVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF 61
           C  FCF            +  ++MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF
Sbjct: 97  CRQFCFQ---------QQLAFEKMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF 156

Query: 62  LMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSR 121
           L+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSR
Sbjct: 157 LLVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSR 216

Query: 122 QFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 155
           QFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 217 QFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 240

[Close]
BLAST of Cp4.1LG02g13100 vs. TrEMBL
Match: I3SJY8_MEDTR (Ribosomal protein S8 OS=Medicago truncatula GN=MTR_1g105415 PE=2 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.4e-68
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG02g13100 vs. TAIR10
Match: AT1G07770.1 (AT1G07770.1 ribosomal protein S15A)

HSP 1 Score: 263.5 bits (672), Expect = 8.4e-71
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG02g13100 vs. TAIR10
Match: AT5G59850.1 (AT5G59850.1 Ribosomal protein S8 family protein)

HSP 1 Score: 263.5 bits (672), Expect = 8.4e-71
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG02g13100 vs. TAIR10
Match: AT3G46040.1 (AT3G46040.1 ribosomal protein S15A D)

HSP 1 Score: 263.1 bits (671), Expect = 1.1e-70
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVRISVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG02g13100 vs. TAIR10
Match: AT2G39590.1 (AT2G39590.1 Ribosomal protein S8 family protein)

HSP 1 Score: 245.4 bits (625), Expect = 2.4e-65
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 67  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

[Close]
BLAST of Cp4.1LG02g13100 vs. TAIR10
Match: AT4G29430.1 (AT4G29430.1 ribosomal protein S15A E)

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-36
Identity = 67/125 (53.60%), Postives = 94/125 (75.20%), Query Frame = 1 

Query: 30  VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 89
           +LNDAL+++ NAE+RGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 90  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKV 149
            GR+N C  ++ R DV  KEIE +T R LP+RQ+G++V+TT  GI+DHEEA ++NVGG+V
Sbjct: 65  QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124

Query: 150 LGFFY 155
           LGFFY
Sbjct: 125 LGFFY 129

[Close]
BLAST of Cp4.1LG02g13100 vs. NCBI nr
Match: gi|763752780|gb|KJB20168.1| (hypothetical protein B456_003G136100 [Gossypium raimondii])

HSP 1 Score: 266.2 bits (679), Expect = 3.7e-68
Identity = 128/132 (96.97%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 23  DRMVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRS 82
           +RMVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRS
Sbjct: 5   ERMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRS 64

Query: 83  GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARR 142
           GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARR
Sbjct: 65  GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 124

Query: 143 KNVGGKVLGFFY 155
           KNVGGKVLGFFY
Sbjct: 125 KNVGGKVLGFFY 136

[Close]
BLAST of Cp4.1LG02g13100 vs. NCBI nr
Match: gi|728820359|gb|KHG03722.1| (40S ribosomal S15a-1 -like protein [Gossypium arboreum])

HSP 1 Score: 265.4 bits (677), Expect = 6.2e-68
Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 1 

Query: 24  RMVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSG 83
           RMVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSG
Sbjct: 39  RMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSG 98

Query: 84  KIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRK 143
           KIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRK
Sbjct: 99  KIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRK 158

Query: 144 NVGGKVLGFFY 155
           NVGGKVLGFFY
Sbjct: 159 NVGGKVLGFFY 169

[Close]
BLAST of Cp4.1LG02g13100 vs. NCBI nr
Match: gi|922370341|ref|XP_013457334.1| (ribosomal protein S8 [Medicago truncatula])

HSP 1 Score: 264.6 bits (675), Expect = 1.1e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 

Query: 25  MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 84
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 85  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 144
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 145 VGGKVLGFFY 155
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]
BLAST of Cp4.1LG02g13100 vs. NCBI nr
Match: gi|674944661|emb|CDX88728.1| (BnaA03g09210D [Brassica napus])

HSP 1 Score: 264.6 bits (675), Expect = 1.1e-67
Identity = 128/132 (96.97%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 23  DRMVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRS 82
           +RMVRISVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRS
Sbjct: 142 ERMVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRS 201

Query: 83  GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARR 142
           GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARR
Sbjct: 202 GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 261

Query: 143 KNVGGKVLGFFY 155
           KNVGGKVLGFFY
Sbjct: 262 KNVGGKVLGFFY 273

[Close]
BLAST of Cp4.1LG02g13100 vs. NCBI nr
Match: gi|763816942|gb|KJB83794.1| (hypothetical protein B456_013G265000 [Gossypium raimondii])

HSP 1 Score: 264.6 bits (675), Expect = 1.1e-67
Identity = 131/153 (85.62%), Postives = 137/153 (89.54%), Query Frame = 1 

Query: 2   CWSFCFWFACSRRHVLDAMIKDRMVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF 61
           C  FCF            +  ++MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF
Sbjct: 97  CRQFCFQ---------QQLAFEKMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF 156

Query: 62  LMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSR 121
           L+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSR
Sbjct: 157 LLVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSR 216

Query: 122 QFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 155
           QFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 217 QFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 240

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g13100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R15A1_ARATH1.5e-6998.4640S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2[more]
R15A4_ARATH1.9e-6998.4640S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3[more]
RS15A_BRANA4.3e-6997.6940S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3[more]
RS15A_DAUCA2.1e-6896.1540S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3[more]
R15A3_ARATH4.2e-6490.7740S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2[more]
BLAST of Cp4.1LG02g13100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2P107_GOSRA2.6e-6896.97Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1[more]
A0A0B0MTM3_GOSAR4.4e-6897.7140S ribosomal S15a-1-like protein OS=Gossypium arboreum GN=F383_28011 PE=3 SV=1[more]
T1LHD1_TRIUA5.7e-6897.71Uncharacterized protein OS=Triticum urartu PE=3 SV=1[more]
A0A0D2VKJ6_GOSRA7.4e-6885.62Uncharacterized protein OS=Gossypium raimondii GN=B456_013G265000 PE=3 SV=1[more]
I3SJY8_MEDTR7.4e-6898.46Ribosomal protein S8 OS=Medicago truncatula GN=MTR_1g105415 PE=2 SV=1[more]
BLAST of Cp4.1LG02g13100 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07770.18.4e-7198.46 ribosomal protein S15A[more]
AT5G59850.18.4e-7198.46 Ribosomal protein S8 family protein[more]
AT3G46040.11.1e-7098.46 ribosomal protein S15A D[more]
AT2G39590.12.4e-6590.77 Ribosomal protein S8 family protein[more]
AT4G29430.13.0e-3653.60 ribosomal protein S15A E[more]
BLAST of Cp4.1LG02g13100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763752780|gb|KJB20168.1|3.7e-6896.97hypothetical protein B456_003G136100 [Gossypium raimondii][more]
gi|728820359|gb|KHG03722.1|6.2e-6897.7140S ribosomal S15a-1 -like protein [Gossypium arboreum][more]
gi|922370341|ref|XP_013457334.1|1.1e-6798.46ribosomal protein S8 [Medicago truncatula][more]
gi|674944661|emb|CDX88728.1|1.1e-6796.97BnaA03g09210D [Brassica napus][more]
gi|763816942|gb|KJB83794.1|1.1e-6785.62hypothetical protein B456_013G265000 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_S8
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0006412 translation
cellular_component GO:0005618 cell wall
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g13100.1Cp4.1LG02g13100.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000630Ribosomal protein S8HAMAPMF_01302_ARibosomal_S8_Acoord: 26..154
score: 32
IPR000630Ribosomal protein S8PANTHERPTHR1175840S RIBOSOMAL PROTEIN S15Acoord: 24..154
score: 2.4E
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 31..154
score: 4.5
IPR000630Ribosomal protein S8PROSITEPS00053RIBOSOMAL_S8coord: 124..141
scor
IPR000630Ribosomal protein S8unknownSSF56047Ribosomal protein S8coord: 28..154
score: 7.19
NoneNo IPR availableGENE3DG3DSA:3.30.1370.30coord: 25..92
score: 4.3
NoneNo IPR availableGENE3DG3DSA:3.30.1490.10coord: 94..152
score: 2.1
NoneNo IPR availablePANTHERPTHR11758:SF16RIBOSOMAL PROTEIN S15Acoord: 24..154
score: 2.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g13100Cucsa.213460Cucumber (Gy14) v1cgycpeB0591
Cp4.1LG02g13100CmaCh13G001560Cucurbita maxima (Rimu)cmacpeB237
Cp4.1LG02g13100CmaCh01G005660Cucurbita maxima (Rimu)cmacpeB491
Cp4.1LG02g13100CmoCh01G005930Cucurbita moschata (Rifu)cmocpeB449
Cp4.1LG02g13100CmoCh13G001600Cucurbita moschata (Rifu)cmocpeB205
Cp4.1LG02g13100Cla008282Watermelon (97103) v1cpewmB548
Cp4.1LG02g13100Csa1G481220Cucumber (Chinese Long) v2cpecuB534
Cp4.1LG02g13100MELO3C020704Melon (DHL92) v3.5.1cpemeB490
Cp4.1LG02g13100ClCG03G001910Watermelon (Charleston Gray)cpewcgB500
Cp4.1LG02g13100CSPI01G22470Wild cucumber (PI 183967)cpecpiB536
Cp4.1LG02g13100Lsi02G013940Bottle gourd (USVL1VR-Ls)cpelsiB440
Cp4.1LG02g13100MELO3C020704.2Melon (DHL92) v3.6.1cpemedB581
Cp4.1LG02g13100CsaV3_1G033650Cucumber (Chinese Long) v3cpecucB0664
Cp4.1LG02g13100Bhi08G000332Wax gourdcpewgoB0708
Cp4.1LG02g13100CsGy1G022050Cucumber (Gy14) v2cgybcpeB099
Cp4.1LG02g13100Carg21032Silver-seed gourdcarcpeB1023
Cp4.1LG02g13100Carg12338Silver-seed gourdcarcpeB0622
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g13100Cp4.1LG20g08830Cucurbita pepo (Zucchini)cpecpeB432
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g13100Wax gourdcpewgoB0691
Cp4.1LG02g13100Wax gourdcpewgoB0693
Cp4.1LG02g13100Wax gourdcpewgoB0695
Cp4.1LG02g13100Cucurbita pepo (Zucchini)cpecpeB299
Cp4.1LG02g13100Cucurbita pepo (Zucchini)cpecpeB300
Cp4.1LG02g13100Cucurbita pepo (Zucchini)cpecpeB457
Cp4.1LG02g13100Cucurbita pepo (Zucchini)cpecpeB458
Cp4.1LG02g13100Cucurbita maxima (Rimu)cmacpeB569
Cp4.1LG02g13100Cucurbita maxima (Rimu)cmacpeB637
Cp4.1LG02g13100Cucurbita moschata (Rifu)cmocpeB587
Cp4.1LG02g13100Bottle gourd (USVL1VR-Ls)cpelsiB434
Cp4.1LG02g13100Bottle gourd (USVL1VR-Ls)cpelsiB435
Cp4.1LG02g13100Watermelon (Charleston Gray)cpewcgB498
Cp4.1LG02g13100Watermelon (Charleston Gray)cpewcgB499
Cp4.1LG02g13100Watermelon (97103) v1cpewmB580
Cp4.1LG02g13100Melon (DHL92) v3.5.1cpemeB489
Cp4.1LG02g13100Cucumber (Gy14) v2cgybcpeB824
Cp4.1LG02g13100Melon (DHL92) v3.6.1cpemedB579
Cp4.1LG02g13100Melon (DHL92) v3.6.1cpemedB578
Cp4.1LG02g13100Silver-seed gourdcarcpeB0426
Cp4.1LG02g13100Silver-seed gourdcarcpeB0427
Cp4.1LG02g13100Silver-seed gourdcarcpeB0471
Cp4.1LG02g13100Silver-seed gourdcarcpeB0472
Cp4.1LG02g13100Cucumber (Chinese Long) v3cpecucB0715
Cp4.1LG02g13100Cucumber (Chinese Long) v3cpecucB0725