Cucsa.213460.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.213460.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ribosomal protein S8 family protein
Location	scaffold01543 : 1225969 .. 1227565 (+)
Sequence length	939

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCCCGTTTTTTCGTGCTCTTCTTATTGTGTATTTTGTTTTGATTTTTTTTCTTCTTCTGGATTTTGTTTCTGTTTTACTTTTGTTAGAAATCCATTGAAGTTTTAATTTGGAAGGATGGTGAGAGTTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGAAAACGACAGGTCATGATCAGGCCGTCTTCTAAAGTCATCATCAAGTTTCTTCTGGTTATGCAGAAGCACGGTTTGTTTCTTTGATTTGACTTCATCTTTGCAATTTCTTTTCTCTACGTCATCTCATCTCATCTTCTGTTTTTTGATGTTTAGGTTATATTGGTGAATTTGAGTTTGTCGATGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAAATTGAAGGTTGGACTGCTAGGTTGCTCCCTTCCAGACAGGTTAGTGCGTAATACCTTTCACTTTTGTGAAATGCGATTGTGAAATTTAGGGATTTCAATGGAGATGTCAATAGTTGTTAAATGATCTTGTCATTTAGATTGTCTTAGATTCTAAATCTGGCTAGTTGGATATCGTAGTAGATGCACATGAAAGAGTAGTATGAATGCTTATCCATTGATTAACAAGTGCTCTGAAGTGGCTGCTTAGTTTTGCGAACGTTTAAACCCACATTTTTtAAAGCTCGAAACATAACAAGGCGCAATAGTCTTATGTGAAGCATGCATGCTCCGTAAATGGAGTAAACGCGAGTAAGCATGGTTGGGGTGGAAATGTGAAaTAAAAaGCCCCAACCACAATTTTTtAAtCTTTGTTAATGCAACAAGCCTACTTTGGGATGGTTCTGTGGTCGTCCAGAGGGCTTTTAAAaTACTAGTTTAGATAAAaGTTTGGACTATTTtACTTTTGAATTATCTTTtATTTTCCATTGGAGgTGCAGGCTATGTAAAGATTTGTTTAGTAACATGATTTTTCAATATATGGTAATGATCTGTTTGATGAAATTCATAATATGCAGTTTGGATTCATTGTGCTGACAACATCTGCTGGAATTATGGATCACGAAGAAGCAAGAAGGAAGAATGTTGGAGGCAAAGTTCTTGGTTTCTTCTACTGAACATGGTTTTGAGCATCCATTATGGAGTTTTGACATAGCTTTCAAATAGTACTACATTTTCTCTCGGTAAAGAAAGATCCTTATCCTGTATTGATGATTAGATTTTGTGTTGCCAGTTTCTCATTTCTTAAGTTAATTCCAAGGAAGATTCTATTGTTTTCGTGAAGACGTTTTGGTTCTTTTAATTATATTGGAAGAGAACTAGTGCTTTTTAATTTCTTGCTACCTACTCTCCCAACTCTGTTTTCTGTCACTTGTGTTTTCAAGTTCAATAATAGTTATCTGAGAGACACCCGGAGCAGCAGCCCTTTTTAAAGCTTTACTCAAACTTGTAGAAATGTTATAATTTGGAGTCTTAGACTTGCACAGTTGTTTTAGAAATTAGACTGCAATGGATAAAAATTGAGCCCTAAAGCTTGAACCGAACA

mRNA sequence

TTCTCCCGttttttcgtgctcttcttattgtgtattttgttttgattttttttcttcttctggattttgtttctgttttacttttgttAGAAATCCATTGAAGTTTTAATTTGGAAGGATGGTGAGAGTTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGAAAACGACAGGTCATGATCAGGCCGTCTTCTAAAGTCATCATCAAGTTTCTTCTGGTTATGCAGAAGCACGGTTATATTGGTGAATTTGAGTTTGTCGATGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAAATTGAAGGTTGGACTGCTAGGTTGCTCCCTTCCAGACAGTTTGGATTCATTGTGCTGACAACATCTGCTGGAATTATGGATCACGAAGAAGCAAGAAGGAAGAATGTTGGAGGCAAAGTTCTTGGTTTCTTCTACTGAACATGGTTTTGAGCATCCATTATGGAGTTTTGACATAGCTTTCAAATAGTACTACATTTTCTCTCGGTAAAGAAAGATCCTTATCCTGTATTGATGATTAGATTTTGTGTTGCCAGTTTCTCATTTCTTAAGTTAATTCCAAGGAAGATTCTATTGTTTTCGTGAAGACGTTTTGGTTCTTTTAATTATATTGGAAGAGAACTAGTGCTTTTTAATTTCTTGCTACCTACTCTCCCAACTCTGTTTTCTGTCACTTGTGTTTTCAAGTTCAATAATAGTTATCTGAGAGACACCCGGAGCAGCAGCCCTTTTTAAAGCTTTActcaaacttgtagaaatgttataatttggagtcttagacttgcacagttgttttagaaattagactgcaatggataaaaattgagccctaaagcttgaaccgaaca

Coding sequence (CDS)

ATGGTGAGAGTTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGAAAACGACAGGTCATGATCAGGCCGTCTTCTAAAGTCATCATCAAGTTTCTTCTGGTTATGCAGAAGCACGGTTATATTGGTGAATTTGAGTTTGTCGATGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAAATTGAAGGTTGGACTGCTAGGTTGCTCCCTTCCAGACAGTTTGGATTCATTGTGCTGACAACATCTGCTGGAATTATGGATCACGAAGAAGCAAGAAGGAAGAATGTTGGAGGCAAAGTTCTTGGTTTCTTCTACTGA

Protein sequence

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY*

Homology

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BLAST of Cucsa.213460.2 vs. Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 257.3 bits (656), Expect = 9.1e-68
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-67
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 255.8 bits (652), Expect = 2.6e-67
Identity = 125/130 (96.15%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 252.7 bits (644), Expect = 2.2e-66
Identity = 124/130 (95.38%), Postives = 129/130 (99.23%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 239.6 bits (610), Expect = 2.0e-62
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFE+VDDHRSGK
Sbjct: 1   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 61  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. TrEMBL
Match: A0A0A0KZP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608140 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.1e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 85  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 144

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 145 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 204

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 205 VGGKVLGFFY 214

[Close]

BLAST of Cucsa.213460.2 vs. TrEMBL
Match: Q9SBL9_CITLA (Wrp15a OS=Citrullus lanatus GN=wrp15a PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.1e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. TrEMBL
Match: A0A0B0MTM3_GOSAR (40S ribosomal S15a-1-like protein OS=Gossypium arboreum GN=F383_28011 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.5e-66
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFE+VDDHRSGK
Sbjct: 40  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 99

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 100 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 159

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 160 VGGKVLGFFY 169

[Close]

BLAST of Cucsa.213460.2 vs. TrEMBL
Match: A0A0D2UWX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.5e-66
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. TrEMBL
Match: A0A0D2VKJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G265000 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.5e-66
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFE+VDDHRSGK
Sbjct: 111 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 170

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 171 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 230

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 231 VGGKVLGFFY 240

[Close]

BLAST of Cucsa.213460.2 vs. TAIR10
Match: AT1G07770.1 (AT1G07770.1 ribosomal protein S15A)

HSP 1 Score: 257.3 bits (656), Expect = 5.1e-69
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. TAIR10
Match: AT5G59850.1 (AT5G59850.1 Ribosomal protein S8 family protein)

HSP 1 Score: 257.3 bits (656), Expect = 5.1e-69
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. TAIR10
Match: AT3G46040.1 (AT3G46040.1 ribosomal protein S15A D)

HSP 1 Score: 256.9 bits (655), Expect = 6.7e-69
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. TAIR10
Match: AT2G39590.1 (AT2G39590.1 Ribosomal protein S8 family protein)

HSP 1 Score: 239.6 bits (610), Expect = 1.1e-63
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFE+VDDHRSGK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 67  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

[Close]

BLAST of Cucsa.213460.2 vs. TAIR10
Match: AT4G29430.1 (AT4G29430.1 ribosomal protein S15A E)

HSP 1 Score: 143.7 bits (361), Expect = 8.2e-35
Identity = 67/125 (53.60%), Postives = 94/125 (75.20%), Query Frame = 1


Query: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVEL 65
           +LNDAL+++ NAE+RGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKV 125
            GR+N C  ++ R DV  KEIE +T R LP+RQ+G++V+TT  GI+DHEEA ++NVGG+V
Sbjct: 65  QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124

Query: 126 LGFFY 131
           LGFFY
Sbjct: 125 LGFFY 129

[Close]

BLAST of Cucsa.213460.2 vs. NCBI nr
Match: gi|449453772|ref|XP_004144630.1| (PREDICTED: 40S ribosomal protein S15a-1 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-66
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. NCBI nr
Match: gi|700199780|gb|KGN54938.1| (hypothetical protein Csa_4G608140 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-66
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 85  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 144

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 145 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 204

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 205 VGGKVLGFFY 214

[Close]

BLAST of Cucsa.213460.2 vs. NCBI nr
Match: gi|951042374|ref|XP_014518151.1| (PREDICTED: 40S ribosomal protein S15a-1 [Vigna radiata var. radiata])

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-66
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Cucsa.213460.2 vs. NCBI nr
Match: gi|763752780|gb|KJB20168.1| (hypothetical protein B456_003G136100 [Gossypium raimondii])

HSP 1 Score: 258.5 bits (659), Expect = 6.5e-66
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFE+VDDHRSGK
Sbjct: 7   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 67  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

[Close]

BLAST of Cucsa.213460.2 vs. NCBI nr
Match: gi|502139897|ref|XP_004503959.1| (PREDICTED: 40S ribosomal protein S15a-1-like [Cicer arietinum])

HSP 1 Score: 258.5 bits (659), Expect = 6.5e-66
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

The following BLAST results are available for this feature:

BLAST of Cucsa.213460.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R15A1_ARATH	9.1e-68	96.92	40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2	[more]
R15A4_ARATH	1.2e-67	96.92	40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3	[more]
RS15A_BRANA	2.6e-67	96.15	40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3	[more]
RS15A_DAUCA	2.2e-66	95.38	40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3	[more]
R15A3_ARATH	2.0e-62	90.00	40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2	[more]

BLAST of Cucsa.213460.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZP3_CUCSA	9.1e-67	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608140 PE=3 SV=1	[more]
Q9SBL9_CITLA	9.1e-67	100.00	Wrp15a OS=Citrullus lanatus GN=wrp15a PE=2 SV=1	[more]
A0A0B0MTM3_GOSAR	4.5e-66	98.46	40S ribosomal S15a-1-like protein OS=Gossypium arboreum GN=F383_28011 PE=3 SV=1	[more]
A0A0D2UWX7_GOSRA	4.5e-66	98.46	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G136100 PE=3 SV=1	[more]
A0A0D2VKJ6_GOSRA	4.5e-66	98.46	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G265000 PE=3 SV=1	[more]

BLAST of Cucsa.213460.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07770.1	5.1e-69	96.92	ribosomal protein S15A	[more]
AT5G59850.1	5.1e-69	96.92	Ribosomal protein S8 family protein	[more]
AT3G46040.1	6.7e-69	96.92	ribosomal protein S15A D	[more]
AT2G39590.1	1.1e-63	90.00	Ribosomal protein S8 family protein	[more]
AT4G29430.1	8.2e-35	53.60	ribosomal protein S15A E	[more]

BLAST of Cucsa.213460.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453772\|ref\|XP_004144630.1\|	1.3e-66	100.00	PREDICTED: 40S ribosomal protein S15a-1 [Cucumis sativus]	[more]
gi\|700199780\|gb\|KGN54938.1\|	1.3e-66	100.00	hypothetical protein Csa_4G608140 [Cucumis sativus]	[more]
gi\|951042374\|ref\|XP_014518151.1\|	2.9e-66	99.23	PREDICTED: 40S ribosomal protein S15a-1 [Vigna radiata var. radiata]	[more]
gi\|763752780\|gb\|KJB20168.1\|	6.5e-66	98.46	hypothetical protein B456_003G136100 [Gossypium raimondii]	[more]
gi\|502139897\|ref\|XP_004503959.1\|	6.5e-66	98.46	PREDICTED: 40S ribosomal protein S15a-1-like [Cicer arietinum]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.213460	Cucsa.213460	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.213460.2	Cucsa.213460.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.213460.2.five_prime_UTR.1	Cucsa.213460.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.213460.2.CDS.1	Cucsa.213460.2.CDS.1	CDS
Cucsa.213460.2.CDS.2	Cucsa.213460.2.CDS.2	CDS
Cucsa.213460.2.CDS.3	Cucsa.213460.2.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.213460.2.three_prime_UTR.1	Cucsa.213460.2.three_prime_UTR.1	three_prime_UTR