Cucsa.192730 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.192730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Structure-specific endonuclease subunit SLX1-like protein
Location	scaffold01333 : 579636 .. 583675 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACCAAAGAAAGAATATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGGTAACTCCAATTTCTTCTCTTCTGTTCCTTGTTCCAACAACAGATTCCATGATTTGATGTTGAGAAGTTATCTGGGTCATCTTCGATTAGCCTTAAAAAGCTGATATCCTCTACTGAATTTCATTGGCAAAGAAATTGGCACTTTGCAACTTTTAGATGTCATTTATGCATAAAAGCTATACAAATGTTTCTTAATATCTTAAAGTTGTGTTCTTGTACAGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATTCAATTAAATTACATACTTCTACAATCATTCTGCAATTTGGCCTTCAATTTCAAGGGGCATTGCTTGGTTTTTtGTGATTAGTCATTCTAGACATTAAGTTGCCTTGGACTTTTGAAAGCATGAGTTGTCTCCTAGTTTCTTTGTTGTGGCTGTGATCTTGCTAAGTAAGTTAGATGACAATGGTCTAATCTATTTCATTTTTTCTGTTATTGTGAAAACTATTTCCTTGCGAAACAACATTTATTCACTGCTCTTCCCTGACATTTGTTATAAGATGCATCCTAACTACCGTGAGTTAGCTTAGTGGTTAATAAGGACCATGTAAGTAATTAAAGGACTCAGAGAGATAGGTTTAAGTCATGATATTCACCTACCTAAAATTTAAAGTCTATAAGTTAACTTGACAACCAAATGTAGCAAGTTTAGGATCGTGAGAGTACTTGAGGTGCATATAAGTGAACAAAAAAACTCACTTTTTTtAAAAAaCCGAAAATGCATCTTTGATGAGAGCTTAACATGTCTATGTGAGAATTGAATGATAGGCCACAGCCTATAGTTTTGTTTGTCAACAACAAAGGGAAAGATTTTGGGAGCTTTCCCAATCTCTCCCAATACTCAAAAGAGAGTCCCAAGTACAAAATATCAGTGAAAAGATGATCAACACAAGTATTTAAAGAAAAAGCAAATGAAAAAAaCTAAACCATCCTAAAAAATTTCTGGCCCGCACAACTAACAGAATTTCTTAAGGGCCCACAACACATATTTCCTCACTTAATTACCCTTTCTTATGCCTTCGACTATATACTTTCAAGCTTGGGGCCTTATCATTGAACTCCAGCATTACTCTTTAAATCCTTATATTTTCTTAAAAGCCTGAAAATACTTTACTTGGAGGAGAGAAACCTCAGAGAATTCCTCCTATTAAATCCATGTATAAATGCTGATGTTTGCCCTTTTTATAAGAATAATGAAATAGTAGAATCAAAGCCAAATAAGACATCTCTGGTGAGTGGATCAGTAAGTACTCTGCAGCAAAGTGTTCTAGAAGACCCACAATTCATGATGTATGTGCCAAGTGCGATAGTATTGGGTACTTGCAGTTGAAGCATTGATGGGGCCAGAGGAGGCAAAAGATAATGTGGTGGTGACTTGGGATTTCATTTCATACTCCAAAAGACACAAGGAATAGGAAGAAACTTTAGGTAACCTAAAATTTTAACTCATCAATTAAAGGTGGAAAATTTTCTTTATCTGTTTAAGTACCAATATAAGATGATTCAAGGTTGAAGACACTACTCTTGTGAGTTGTCAAGAAAATGCTGCAAAATCCTGTGCCAGAATACTGTAGACATACTTTCTGGTATCTGAAACTCTCTTATCCTTGCAACTGGAAGTACTAATGAGACTGAAAACAGGTAAATACCTAGAATGCAGCATTCAAATTGTTTTGTATTCTTAACTTGCCGCCTTAAACAGCATTGGCAACTGGAGTAGGAGTTAAACATGTTTAAATTAAGGGTGCATATCTGAGTGGAAACTAACATGCTATGGCAACGCCAAGTAAGAAGATATTTAGTTTGGCTGCCACATCATCATATAATTCCATGGAAATGGTCTCCCATATTGGGTAAAATGCAACAGTATAGCTGCAAAAGGAGAGACAATGGTAACTAATATAATACTGTGCTAGACCTTTTAAGGGGTGTGGCCCAAGGAGTTGGGAGAGGAGTTGCGAGGCTCCACTCCTTGTTTGGCCCAAGGAGTTTGTAGGCTTTGTAACTAAAACCCATCAATTTTGTGTCTTATTAAATCGTTACACTAATAGGTCCTAGGAGTTGACAACTCCAATCTTTACCCGAAACACCCCTTTCAAGTGAGTGTAAAGCATAAGAGAGTCGGGCAAAGGAGTGACTTAGCTTTAATTGAGAACTGTATTGTTTAGGATGGATGTAACTATTTAGTTAGACCAGCATGAGCGGTGTGACTTGCAGAGTATTTAGGAGTGAAATTTGGGCAAAGATAGGAAACCCATGGATTCTCCCTTTTTTGTATCATATAATATGAAACAGTTTCTATCATATAATTTTTtCTTCCCATAAAGTAGAGATCTAGAAACAAACTCATGAATTTCATTAATGTCGACAAGAAGAGGACAAATAAAGGCAATAGTAAACACAGATGATAAAATAATAGTTGAGTTCTTTTTCCTGTTTGGGAAAGGAACTGGTGCATTTTGCAGGTGAAATGCTCAAGGACAGTTTCAGGGCTCTATAATTCATGCCCTAAGTTTGTGTAATGAACCAACCATGATATTTATGATTTCCATGGCTGAGACAACTCCATGCATAAGAAATACTTGCTGATTGGATTGACTTATTTATGCAAAGAAACAAACTTATTCAATATTTTACACAGCTTGCATTCCTCTTGCTTATCCATTTTTGGTAGTCATCAGCTCCTCAAATTATATGCATGTTAAGACTCCTACCTACCAAATTGGGCCTTCCATCTTTAGTGCCTTTAACATTTTTTTtCCTTCAGAAATGAAACAAGTTGCAATTTTAATCGCCATGTATGGTATCCCATTTATCATTTGCCTGACATTCGAAGGGCAGTAGTTGGGGTTGTACTTACTTCTGCCAAGGGAAATGAAGCAACTGGGAGATTTCTAGGACTCTCATAGTACCCTACTTCGTTTGTTCATACTATAATTGGTTTTCATAAATGTCAGTAGATCCCACCCATTTTTGAAAAGTGTGTTGTTGTGGTATACAATAAATGGAGGGAGTTTTTTGTACTCCCATAGTAAAGAAAATTTTCCCCAACTCATTGTCATCCTTTAAACAACTTTTGGTAGGAAGTAATTTGTAGTAATCACTACACAACAAAAATTGTCGAGTTTCACTGGTATCTATTGATTGTATGTTATGTGAGATCTTATAAATGTCTTGTTTCTGGTTGCATTTATGATTCATATTGTTGTGCTATGAACATTCTTCAAATTCATGTCCCAAAATCATCCCGCATAAATTTTATCAACACAATGATTTCATTTTTGAAACCTTACACTAAGTTTTTCTTTGGTTCATCAACTTGACACCAAATTTCTCGTGTTTTTCGACCAAGAAACGTTCTGTGAAATCATTCCCACACCATTTCTGATGCTGTTTTTGTATCCTTCGTATGCAGCTTGTGAGTTTGAATCAAAATGGAGAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACATGGGTTGTGGTTTTTCTTTTTCTTTTACAAATATTTATATATTTATTTTCAATTCTATGAATTGAAATAATGATTGTTTATAAGATA

mRNA sequence

GAACCAAAGAAAGAATATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAGAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACATGGGTTGTGGTTTTTCTTTTTCTTTTACaaatatttatatatttattttCAATTCTATGAATTGAAATAATGATTGTTTATAAGATA

Coding sequence (CDS)

ATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAGAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGA

Protein sequence

MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF*

Homology

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BLAST of Cucsa.192730 vs. Swiss-Prot
Match: SLX1_SCHJY (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=slx1 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 46  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQ 105
           +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +
Sbjct: 3   YCCYLLVSEKAASRSVYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTK 62

Query: 106 SQACEFESKWR 116
             A +FE  W+
Sbjct: 63  IAALQFEWVWQ 73

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BLAST of Cucsa.192730 vs. Swiss-Prot
Match: SLX1_SCHPO (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slx1 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1


Query: 46  WCVYLIISSNSPIK--TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKD 105
           +C YL+ S+ +      Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPN 66

Query: 106 QSQACEFESKWRKV 118
           +  A +FE  W+ +
Sbjct: 67  KVSALKFEWNWQNL 80

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BLAST of Cucsa.192730 vs. Swiss-Prot
Match: SLX1_TALMQ (Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=slx1 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 39  PKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICAC 98
           PKP    +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW    
Sbjct: 12  PKPIPAFYCCYLLRSVKKPSSLYIGSTPDPARRLEQHNGFTKGGAKRTERDTLRPWEMIT 71

Query: 99  TIHGFKDQSQACEFESKWRKV 118
            I GF  ++ A +FE  W+ V
Sbjct: 72  IIEGFTSRTGALQFEWSWQHV 92

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BLAST of Cucsa.192730 vs. Swiss-Prot
Match: SLX1_TALSN (Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=slx1 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.6e-10
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 1


Query: 40  KPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACT 99
           KP    +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     
Sbjct: 13  KPIPAFYCCYLLRSAKRPSALYIGSTPDPARRLEQHNGFAKGGAKRTERNTLRPWEMVAI 72

Query: 100 IHGFKDQSQACEFESKWRKV 118
           + GF  ++ A +FE  W+ V
Sbjct: 73  VEGFPSRTGALQFEWSWQHV 92

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BLAST of Cucsa.192730 vs. Swiss-Prot
Match: SLX1_LEIIN (Structure-specific endonuclease subunit SLX1 homolog OS=Leishmania infantum GN=LinJ25.1380 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-09
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 47  CVYLIISSNSPIKT--YVGVTLDFDRRLKQHNGEIKGGAKAT-RAGRPWICACTIHGFKD 106
           CVYL+ S +   +   Y+G T++  RRL+QHNGE+  GA+ T R GRPW   C + GF D
Sbjct: 7   CVYLLTSLDPQCEGDFYIGYTVNPLRRLRQHNGELVNGARRTSRRGRPWTIVCCVSGFPD 66

Query: 107 QSQACEFESKWR 116
              A +FE  W+
Sbjct: 67  DRAALKFEWCWQ 78

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BLAST of Cucsa.192730 vs. TrEMBL
Match: A0A0A0LCZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.0e-94
Identity = 168/170 (98.82%), Postives = 169/170 (99.41%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKW+KVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISYEKKEEDVGK LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of Cucsa.192730 vs. TrEMBL
Match: A0A061DUV7_THECC (LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1 OS=Theobroma cacao GN=TCM_005809 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-50
Identity = 104/170 (61.18%), Postives = 126/170 (74.12%), Query Frame = 1


Query: 1    MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
            MRLL+ TFR VK P  NP   K SSS S   + I KS    K K WCVYLI+S+N+PIKT
Sbjct: 1124 MRLLTATFRSVKHP--NPDFIKPSSSLSSGSSPIAKS----KTKSWCVYLILSTNAPIKT 1183

Query: 61   YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRK 120
            YVGVT DF RRLKQHNGE+KGGAKA+RAGRPWICAC I GF DQS+ACEFESKW++ SRK
Sbjct: 1184 YVGVTTDFSRRLKQHNGELKGGAKASRAGRPWICACIIRGFNDQSEACEFESKWKRFSRK 1243

Query: 121  ISYEKKEEDVGKQL--DDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLD 169
            +  ++K  D+ K++  DD +L LL+HR+ AL +VK   DCS  E DW+L+
Sbjct: 1244 LPCKRKNSDLTKEVDEDDGSLTLLQHRQTALNRVKGSLDCSHLEIDWQLN 1287

[Close]

BLAST of Cucsa.192730 vs. TrEMBL
Match: A0A072TLC3_MEDTR (Structure-specific endonuclease subunit SLX1-like protein OS=Medicago truncatula GN=MTR_0003s0480 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-48
Identity = 97/171 (56.73%), Postives = 125/171 (73.10%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MR LS TFR +K PISNP LSK SSSS K   L    +PK +   WCVYLI+S+N PIKT
Sbjct: 1   MRTLSQTFRSIKRPISNPKLSKCSSSSPKKSEL----KPKSESSSWCVYLILSTNHPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRK 120
           YVGVT +F RRLK+HNG++KGGAKA+RAGRPWICAC + GF ++S+AC FESKW+ +SR+
Sbjct: 61  YVGVTTNFPRRLKEHNGDLKGGAKASRAGRPWICACIVCGFTNRSEACVFESKWKALSRR 120

Query: 121 ISYEKKEEDVGKQ--LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
           +  +K+ +D  KQ   +D +  LL+HR+ AL +VK   DC+  E +W LDP
Sbjct: 121 VPRKKQNDDSSKQSESEDPSRPLLQHRQAALNRVKTSLDCTNLEINWHLDP 167

[Close]

BLAST of Cucsa.192730 vs. TrEMBL
Match: M5X494_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015867mg PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-47
Identity = 101/175 (57.71%), Postives = 125/175 (71.43%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSE------PKPKLKQWCVYLIISS 60
           M+ LS TF  VK P  NP   KS   SS   +L +KSE      P    + W VYLI+S+
Sbjct: 1   MQRLSRTFPSVKHP--NP---KSPKISSFPRSLPIKSEEATLNSPSKSRRSWSVYLILST 60

Query: 61  NSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKW 120
           N+PIKTYVGVT DF RRLKQHNGE+KGGAKA+ AGRPWICAC IHGFKDQS+ACEFESKW
Sbjct: 61  NTPIKTYVGVTTDFSRRLKQHNGELKGGAKASCAGRPWICACLIHGFKDQSEACEFESKW 120

Query: 121 RKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
           + +SR +S ++K ++  +Q+ D +L LL+HR+ AL +VK L DC+  E DWKL P
Sbjct: 121 KSLSRSLSRKRKNDNKVEQVKDLSLPLLQHRQAALNRVKGLLDCTHLEIDWKLGP 170

[Close]

BLAST of Cucsa.192730 vs. TrEMBL
Match: A0A151TLN7_CAJCA (Structure-specific endonuclease subunit slx1 OS=Cajanus cajan GN=KK1_021589 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.0e-46
Identity = 95/169 (56.21%), Postives = 117/169 (69.23%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MR LS  FR VK P  NP LSKSSS +  +         KPK + WCVYLI+S+N PIKT
Sbjct: 2   MRTLSTQFRSVKRPNPNPKLSKSSSPAKSE-------NAKPKSEPWCVYLILSTNHPIKT 61

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRK 120
           YVGVT +F RRLKQHNGE+KGGAKA+RAGRPWICAC + GF D+S AC FESKW+  SR+
Sbjct: 62  YVGVTNNFPRRLKQHNGELKGGAKASRAGRPWICACIVCGFTDRSDACVFESKWKAFSRR 121

Query: 121 ISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
              + K +D+  Q +D +L LL+HR+ AL +VK   DC+  +  W LDP
Sbjct: 122 APRKNKNDDLSMQSEDPSLPLLRHRQAALSRVKGSLDCTNLQIIWHLDP 163

[Close]

BLAST of Cucsa.192730 vs. TAIR10
Match: AT5G43210.1 (AT5G43210.1 Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-42
Identity = 92/173 (53.18%), Postives = 111/173 (64.16%), Query Frame = 1


Query: 2   RLLSHTFRCVKPPISNP--PLSKSSSSSSKDPTLIVKSEPK-----PKLKQWCVYLIISS 61
           RLLS TF  VK   SNP  P  K+  +S     +   S P+     PK K W VYLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKW 121
             PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+CAC I GF   SQA  FESKW
Sbjct: 63  TEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCLSQASSFESKW 122

Query: 122 RKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKL 168
           +  +RK+   KK+ED+      Q+  LL+HR RAL KV+   DCS  E DWK+
Sbjct: 123 KIFTRKLPRRKKDEDM-----SQSDALLQHRRRALNKVEESLDCSYLETDWKI 170

[Close]

BLAST of Cucsa.192730 vs. TAIR10
Match: AT2G30350.2 (AT2G30350.2 Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-08
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1


Query: 59  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWR 116
           +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+
Sbjct: 43  QTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQFEWAWQ 99

[Close]

BLAST of Cucsa.192730 vs. NCBI nr
Match: gi|449467603|ref|XP_004151512.1| (PREDICTED: structure-specific endonuclease subunit SLX1 [Cucumis sativus])

HSP 1 Score: 352.4 bits (903), Expect = 4.3e-94
Identity = 168/170 (98.82%), Postives = 169/170 (99.41%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKW+KVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISYEKKEEDVGK LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of Cucsa.192730 vs. NCBI nr
Match: gi|659123783|ref|XP_008461838.1| (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 5.3e-84
Identity = 154/170 (90.59%), Postives = 161/170 (94.71%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHGFKDQSQACEFESKW+KVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISYEKKE+DVGKQLD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Sbjct: 121 ISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

[Close]

BLAST of Cucsa.192730 vs. NCBI nr
Match: gi|590724297|ref|XP_007052427.1| (LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 206.5 bits (524), Expect = 3.8e-50
Identity = 104/170 (61.18%), Postives = 126/170 (74.12%), Query Frame = 1


Query: 1    MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
            MRLL+ TFR VK P  NP   K SSS S   + I KS    K K WCVYLI+S+N+PIKT
Sbjct: 1124 MRLLTATFRSVKHP--NPDFIKPSSSLSSGSSPIAKS----KTKSWCVYLILSTNAPIKT 1183

Query: 61   YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRK 120
            YVGVT DF RRLKQHNGE+KGGAKA+RAGRPWICAC I GF DQS+ACEFESKW++ SRK
Sbjct: 1184 YVGVTTDFSRRLKQHNGELKGGAKASRAGRPWICACIIRGFNDQSEACEFESKWKRFSRK 1243

Query: 121  ISYEKKEEDVGKQL--DDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLD 169
            +  ++K  D+ K++  DD +L LL+HR+ AL +VK   DCS  E DW+L+
Sbjct: 1244 LPCKRKNSDLTKEVDEDDGSLTLLQHRQTALNRVKGSLDCSHLEIDWQLN 1287

[Close]

BLAST of Cucsa.192730 vs. NCBI nr
Match: gi|502179662|ref|XP_004516472.1| (PREDICTED: structure-specific endonuclease subunit slx1 [Cicer arietinum])

HSP 1 Score: 203.8 bits (517), Expect = 2.5e-49
Identity = 98/169 (57.99%), Postives = 122/169 (72.19%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MR LS TFR +K PI NP LSKSS S S      VK   KPK   WCVYLI+S+N PIKT
Sbjct: 3   MRTLSETFRSIKRPIPNPKLSKSSPSPSISE---VKFTAKPKSDSWCVYLILSTNHPIKT 62

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRK 120
           YVGVT +F RRLKQHNGE+KGGAKA+RAGRPWICAC I GF D+S+AC FESKW+  +R+
Sbjct: 63  YVGVTTNFPRRLKQHNGELKGGAKASRAGRPWICACLICGFADRSEACVFESKWKAFTRR 122

Query: 121 ISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
              + + +++ K+ +D +L LL+HR+ AL +VK   DC+  E +W LDP
Sbjct: 123 FPRKNQNDNLSKECEDPSLPLLRHRQAALNRVKNSLDCTNLEINWHLDP 168

[Close]

BLAST of Cucsa.192730 vs. NCBI nr
Match: gi|922328491|ref|XP_013443638.1| (structure-specific endonuclease subunit SLX1-like protein [Medicago truncatula])

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-48
Identity = 97/171 (56.73%), Postives = 125/171 (73.10%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MR LS TFR +K PISNP LSK SSSS K   L    +PK +   WCVYLI+S+N PIKT
Sbjct: 1   MRTLSQTFRSIKRPISNPKLSKCSSSSPKKSEL----KPKSESSSWCVYLILSTNHPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRK 120
           YVGVT +F RRLK+HNG++KGGAKA+RAGRPWICAC + GF ++S+AC FESKW+ +SR+
Sbjct: 61  YVGVTTNFPRRLKEHNGDLKGGAKASRAGRPWICACIVCGFTNRSEACVFESKWKALSRR 120

Query: 121 ISYEKKEEDVGKQ--LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
           +  +K+ +D  KQ   +D +  LL+HR+ AL +VK   DC+  E +W LDP
Sbjct: 121 VPRKKQNDDSSKQSESEDPSRPLLQHRQAALNRVKTSLDCTNLEINWHLDP 167

The following BLAST results are available for this feature:

BLAST of Cucsa.192730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SLX1_SCHJY	1.4e-12	47.89	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s...	[more]
SLX1_SCHPO	2.1e-11	43.24	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai...	[more]
SLX1_TALMQ	3.0e-10	44.44	Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain AT...	[more]
SLX1_TALSN	8.6e-10	42.50	Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain A...	[more]
SLX1_LEIIN	3.3e-09	44.44	Structure-specific endonuclease subunit SLX1 homolog OS=Leishmania infantum GN=L...	[more]

BLAST of Cucsa.192730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCZ9_CUCSA	3.0e-94	98.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G683170 PE=4 SV=1	[more]
A0A061DUV7_THECC	2.7e-50	61.18	LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1...	[more]
A0A072TLC3_MEDTR	1.1e-48	56.73	Structure-specific endonuclease subunit SLX1-like protein OS=Medicago truncatula...	[more]
M5X494_PRUPE	1.6e-47	57.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015867mg PE=4 SV=1	[more]
A0A151TLN7_CAJCA	1.0e-46	56.21	Structure-specific endonuclease subunit slx1 OS=Cajanus cajan GN=KK1_021589 PE=4...	[more]

BLAST of Cucsa.192730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43210.1	3.1e-42	53.18	Excinuclease ABC, C subunit, N-terminal	[more]
AT2G30350.2	2.3e-08	43.86	Excinuclease ABC, C subunit, N-terminal	[more]

BLAST of Cucsa.192730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449467603\|ref\|XP_004151512.1\|	4.3e-94	98.82	PREDICTED: structure-specific endonuclease subunit SLX1 [Cucumis sativus]	[more]
gi\|659123783\|ref\|XP_008461838.1\|	5.3e-84	90.59	PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]	[more]
gi\|590724297\|ref\|XP_007052427.1\|	3.8e-50	61.18	LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1...	[more]
gi\|502179662\|ref\|XP_004516472.1\|	2.5e-49	57.99	PREDICTED: structure-specific endonuclease subunit slx1 [Cicer arietinum]	[more]
gi\|922328491\|ref\|XP_013443638.1\|	1.6e-48	56.73	structure-specific endonuclease subunit SLX1-like protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000305	GIY-YIG_endonuc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.192730.1	Cucsa.192730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG nuclease superfamily	PFAM	PF01541	GIY-YIG	coord: 45..120 score: 1.0
IPR000305	GIY-YIG nuclease superfamily	PROFILE	PS50164	GIY_YIG	coord: 44..125 score: 17
IPR000305	GIY-YIG nuclease superfamily	unknown	SSF82771	GIY-YIG endonuclease	coord: 45..121 score: 9.1
None	No IPR available	PANTHER	PTHR20208	FAMILY NOT NAMED	coord: 3..170 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.192730	Csa3G683170	Cucumber (Chinese Long) v2	cgycuB294
Cucsa.192730	MELO3C024009	Melon (DHL92) v3.5.1	cgymeB347
Cucsa.192730	ClCG10G012070	Watermelon (Charleston Gray)	cgywcgB348
Cucsa.192730	CSPI03G29380	Wild cucumber (PI 183967)	cgycpiB303
Cucsa.192730	CmaCh14G009770	Cucurbita maxima (Rimu)	cgycmaB0555
Cucsa.192730	CmoCh14G010010	Cucurbita moschata (Rifu)	cgycmoB0556
Cucsa.192730	Lsi03G011810	Bottle gourd (USVL1VR-Ls)	cgylsiB325
Cucsa.192730	Cp4.1LG03g04710	Cucurbita pepo (Zucchini)	cgycpeB0539
Cucsa.192730	MELO3C024009.2	Melon (DHL92) v3.6.1	cgymedB342
Cucsa.192730	Cla97C10G194880	Watermelon (97103) v2	cgywmbB354
Cucsa.192730	Carg11199	Silver-seed gourd	carcgyB0929

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.192730	Wax gourd	cgywgoB395
Cucsa.192730	Cucurbita maxima (Rimu)	cgycmaB0559
Cucsa.192730	Cucurbita moschata (Rifu)	cgycmoB0560
Cucsa.192730	Watermelon (97103) v1	cgywmB370
Cucsa.192730	Cucurbita pepo (Zucchini)	cgycpeB0535
Cucsa.192730	Silver-seed gourd	carcgyB0861
Cucsa.192730	Cucumber (Chinese Long) v3	cgycucB307