Cucsa.192730.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAACCAAAGAAAGAATATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGGTAACTCCAATTTCTTCTCTTCTGTTCCTTGTTCCAACAACAGATTCCATGATTTGATGTTGAGAAGTTATCTGGGTCATCTTCGATTAGCCTTAAAAAGCTGATATCCTCTACTGAATTTCATTGGCAAAGAAATTGGCACTTTGCAACTTTTAGATGTCATTTATGCATAAAAGCTATACAAATGTTTCTTAATATCTTAAAGTTGTGTTCTTGTACAGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATTCAATTAAATTACATACTTCTACAATCATTCTGCAATTTGGCCTTCAATTTCAAGGGGCATTGCTTGGTTTTTtGTGATTAGTCATTCTAGACATTAAGTTGCCTTGGACTTTTGAAAGCATGAGTTGTCTCCTAGTTTCTTTGTTGTGGCTGTGATCTTGCTAAGTAAGTTAGATGACAATGGTCTAATCTATTTCATTTTTTCTGTTATTGTGAAAACTATTTCCTTGCGAAACAACATTTATTCACTGCTCTTCCCTGACATTTGTTATAAGATGCATCCTAACTACCGTGAGTTAGCTTAGTGGTTAATAAGGACCATGTAAGTAATTAAAGGACTCAGAGAGATAGGTTTAAGTCATGATATTCACCTACCTAAAATTTAAAGTCTATAAGTTAACTTGACAACCAAATGTAGCAAGTTTAGGATCGTGAGAGTACTTGAGGTGCATATAAGTGAACAAAAAAACTCACTTTTTTtAAAAAaCCGAAAATGCATCTTTGATGAGAGCTTAACATGTCTATGTGAGAATTGAATGATAGGCCACAGCCTATAGTTTTGTTTGTCAACAACAAAGGGAAAGATTTTGGGAGCTTTCCCAATCTCTCCCAATACTCAAAAGAGAGTCCCAAGTACAAAATATCAGTGAAAAGATGATCAACACAAGTATTTAAAGAAAAAGCAAATGAAAAAAaCTAAACCATCCTAAAAAATTTCTGGCCCGCACAACTAACAGAATTTCTTAAGGGCCCACAACACATATTTCCTCACTTAATTACCCTTTCTTATGCCTTCGACTATATACTTTCAAGCTTGGGGCCTTATCATTGAACTCCAGCATTACTCTTTAAATCCTTATATTTTCTTAAAAGCCTGAAAATACTTTACTTGGAGGAGAGAAACCTCAGAGAATTCCTCCTATTAAATCCATGTATAAATGCTGATGTTTGCCCTTTTTATAAGAATAATGAAATAGTAGAATCAAAGCCAAATAAGACATCTCTGGTGAGTGGATCAGTAAGTACTCTGCAGCAAAGTGTTCTAGAAGACCCACAATTCATGATGTATGTGCCAAGTGCGATAGTATTGGGTACTTGCAGTTGAAGCATTGATGGGGCCAGAGGAGGCAAAAGATAATGTGGTGGTGACTTGGGATTTCATTTCATACTCCAAAAGACACAAGGAATAGGAAGAAACTTTAGGTAACCTAAAATTTTAACTCATCAATTAAAGGTGGAAAATTTTCTTTATCTGTTTAAGTACCAATATAAGATGATTCAAGGTTGAAGACACTACTCTTGTGAGTTGTCAAGAAAATGCTGCAAAATCCTGTGCCAGAATACTGTAGACATACTTTCTGGTATCTGAAACTCTCTTATCCTTGCAACTGGAAGTACTAATGAGACTGAAAACAGGTAAATACCTAGAATGCAGCATTCAAATTGTTTTGTATTCTTAACTTGCCGCCTTAAACAGCATTGGCAACTGGAGTAGGAGTTAAACATGTTTAAATTAAGGGTGCATATCTGAGTGGAAACTAACATGCTATGGCAACGCCAAGTAAGAAGATATTTAGTTTGGCTGCCACATCATCATATAATTCCATGGAAATGGTCTCCCATATTGGGTAAAATGCAACAGTATAGCTGCAAAAGGAGAGACAATGGTAACTAATATAATACTGTGCTAGACCTTTTAAGGGGTGTGGCCCAAGGAGTTGGGAGAGGAGTTGCGAGGCTCCACTCCTTGTTTGGCCCAAGGAGTTTGTAGGCTTTGTAACTAAAACCCATCAATTTTGTGTCTTATTAAATCGTTACACTAATAGGTCCTAGGAGTTGACAACTCCAATCTTTACCCGAAACACCCCTTTCAAGTGAGTGTAAAGCATAAGAGAGTCGGGCAAAGGAGTGACTTAGCTTTAATTGAGAACTGTATTGTTTAGGATGGATGTAACTATTTAGTTAGACCAGCATGAGCGGTGTGACTTGCAGAGTATTTAGGAGTGAAATTTGGGCAAAGATAGGAAACCCATGGATTCTCCCTTTTTTGTATCATATAATATGAAACAGTTTCTATCATATAATTTTTtCTTCCCATAAAGTAGAGATCTAGAAACAAACTCATGAATTTCATTAATGTCGACAAGAAGAGGACAAATAAAGGCAATAGTAAACACAGATGATAAAATAATAGTTGAGTTCTTTTTCCTGTTTGGGAAAGGAACTGGTGCATTTTGCAGGTGAAATGCTCAAGGACAGTTTCAGGGCTCTATAATTCATGCCCTAAGTTTGTGTAATGAACCAACCATGATATTTATGATTTCCATGGCTGAGACAACTCCATGCATAAGAAATACTTGCTGATTGGATTGACTTATTTATGCAAAGAAACAAACTTATTCAATATTTTACACAGCTTGCATTCCTCTTGCTTATCCATTTTTGGTAGTCATCAGCTCCTCAAATTATATGCATGTTAAGACTCCTACCTACCAAATTGGGCCTTCCATCTTTAGTGCCTTTAACATTTTTTTtCCTTCAGAAATGAAACAAGTTGCAATTTTAATCGCCATGTATGGTATCCCATTTATCATTTGCCTGACATTCGAAGGGCAGTAGTTGGGGTTGTACTTACTTCTGCCAAGGGAAATGAAGCAACTGGGAGATTTCTAGGACTCTCATAGTACCCTACTTCGTTTGTTCATACTATAATTGGTTTTCATAAATGTCAGTAGATCCCACCCATTTTTGAAAAGTGTGTTGTTGTGGTATACAATAAATGGAGGGAGTTTTTTGTACTCCCATAGTAAAGAAAATTTTCCCCAACTCATTGTCATCCTTTAAACAACTTTTGGTAGGAAGTAATTTGTAGTAATCACTACACAACAAAAATTGTCGAGTTTCACTGGTATCTATTGATTGTATGTTATGTGAGATCTTATAAATGTCTTGTTTCTGGTTGCATTTATGATTCATATTGTTGTGCTATGAACATTCTTCAAATTCATGTCCCAAAATCATCCCGCATAAATTTTATCAACACAATGATTTCATTTTTGAAACCTTACACTAAGTTTTTCTTTGGTTCATCAACTTGACACCAAATTTCTCGTGTTTTTCGACCAAGAAACGTTCTGTGAAATCATTCCCACACCATTTCTGATGCTGTTTTTGTATCCTTCGTATGCAGCTTGTGAGTTTGAATCAAAATGGAGAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACATGGGTTGTGGTTTTTCTTTTTCTTTTACAAATATTTATATATTTATTTTCAATTCTATGAATTGAAATAATGATTGTTTATAAGATA GAACCAAAGAAAGAATATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAGAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACATGGGTTGTGGTTTTTCTTTTTCTTTTACaaatatttatatatttattttCAATTCTATGAATTGAAATAATGATTGTTTATAAGATA ATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAGAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGA MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF*
BLAST of Cucsa.192730.1 vs. Swiss-Prot
Match: SLX1_SCHJY (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=slx1 PE=3 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12 Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. Swiss-Prot
Match: SLX1_SCHPO (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slx1 PE=1 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11 Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. Swiss-Prot
Match: SLX1_TALMQ (Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=slx1 PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10 Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. Swiss-Prot
Match: SLX1_TALSN (Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=slx1 PE=3 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 8.6e-10 Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. Swiss-Prot
Match: SLX1_LEIIN (Structure-specific endonuclease subunit SLX1 homolog OS=Leishmania infantum GN=LinJ25.1380 PE=3 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.3e-09 Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. TrEMBL
Match: A0A0A0LCZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G683170 PE=4 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 3.0e-94 Identity = 168/170 (98.82%), Postives = 169/170 (99.41%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. TrEMBL
Match: A0A061DUV7_THECC (LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1 OS=Theobroma cacao GN=TCM_005809 PE=3 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 2.7e-50 Identity = 104/170 (61.18%), Postives = 126/170 (74.12%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. TrEMBL
Match: A0A072TLC3_MEDTR (Structure-specific endonuclease subunit SLX1-like protein OS=Medicago truncatula GN=MTR_0003s0480 PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 1.1e-48 Identity = 97/171 (56.73%), Postives = 125/171 (73.10%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. TrEMBL
Match: M5X494_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015867mg PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 1.6e-47 Identity = 101/175 (57.71%), Postives = 125/175 (71.43%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. TrEMBL
Match: A0A151TLN7_CAJCA (Structure-specific endonuclease subunit slx1 OS=Cajanus cajan GN=KK1_021589 PE=4 SV=1) HSP 1 Score: 194.5 bits (493), Expect = 1.0e-46 Identity = 95/169 (56.21%), Postives = 117/169 (69.23%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. TAIR10
Match: AT5G43210.1 (AT5G43210.1 Excinuclease ABC, C subunit, N-terminal) HSP 1 Score: 168.7 bits (426), Expect = 3.1e-42 Identity = 92/173 (53.18%), Postives = 111/173 (64.16%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. TAIR10
Match: AT2G30350.2 (AT2G30350.2 Excinuclease ABC, C subunit, N-terminal) HSP 1 Score: 56.2 bits (134), Expect = 2.3e-08 Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. NCBI nr
Match: gi|449467603|ref|XP_004151512.1| (PREDICTED: structure-specific endonuclease subunit SLX1 [Cucumis sativus]) HSP 1 Score: 352.4 bits (903), Expect = 4.3e-94 Identity = 168/170 (98.82%), Postives = 169/170 (99.41%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. NCBI nr
Match: gi|659123783|ref|XP_008461838.1| (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]) HSP 1 Score: 318.9 bits (816), Expect = 5.3e-84 Identity = 154/170 (90.59%), Postives = 161/170 (94.71%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. NCBI nr
Match: gi|590724297|ref|XP_007052427.1| (LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1 [Theobroma cacao]) HSP 1 Score: 206.5 bits (524), Expect = 3.8e-50 Identity = 104/170 (61.18%), Postives = 126/170 (74.12%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. NCBI nr
Match: gi|502179662|ref|XP_004516472.1| (PREDICTED: structure-specific endonuclease subunit slx1 [Cicer arietinum]) HSP 1 Score: 203.8 bits (517), Expect = 2.5e-49 Identity = 98/169 (57.99%), Postives = 122/169 (72.19%), Query Frame = 1
BLAST of Cucsa.192730.1 vs. NCBI nr
Match: gi|922328491|ref|XP_013443638.1| (structure-specific endonuclease subunit SLX1-like protein [Medicago truncatula]) HSP 1 Score: 201.1 bits (510), Expect = 1.6e-48 Identity = 97/171 (56.73%), Postives = 125/171 (73.10%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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