MELO3C024009.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C024009.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionstructure-specific endonuclease subunit slx1
Locationchr04 : 23675754 .. 23679249 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGATTGCGAGTGGAAACTCTCAACCAACAACCACAACACTCAGTGATCCTCTTTGCATTGATGAAGAAAAAGAAACAAAGTCAAATAGAAGAGAATGGATGTTGGTTGCAAATCCAATAGAGATGGAAGTCTTATCCATACATACAAGATGATGCAAACTTGCAATTATAAGTGAACTTTAAAGAGAATTTAAGGTGAGGTTTATACTTTATTTAAACAATGGACAAGAATTTGACGATGAAAATAACAAAGCGATGTTAATTTTCTTTTTTAGAAGAACTGGGAGTTTCGAACCCGCGCTGAAGAAGAGGAACCAAAGAAAGAATTATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATTGGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGGTAACTCCAATTTCTTCTCTTCTGTTCCTTGTTCCAACAACAGATTCCATGATTTGAGGTTGAAAAGTTATCTGTGTCATCTTCGATTAGCCTTAAAAAGCTGATAGCCTCTAGTGAATTTCATTGGCATACAAATTGGCACTTTGCAACTTTTAGATGTCCTTTATGCATAAAAGCTATACAAATATTTCTTCATGTCATAAAGTTGGGCTCTTGTACAGTTTGAAACAGCATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATTCAATTAAATTACATACTTCTAGAATCATGCTGCAATTTGGGCTCTAATTTCAAGTGCATTGCTTGGTTTTTCGTGATTGTTGTCATTCTAGACATTATGTTGCCTTGGGCTTTTGCAAACTTGAGTTGTCTCCTAGTTTCTAGGTTGTGGCAGTGATCTTGCTAAGTAAGATAGATGACAATTCATGATGGATATGTGCCAAGTGCGATAGTATTGGGTACTAGCAGTTGAAGCATTGATGGGGCCAGAGGAGGCAAAAGATAATGTGGTGACTTGGGATTTCATTTCATGCTCCAAAAGACACAGGGAATAGAAGAAACTTTAGTTAACCTAAAATTTTAATTCATCAATTAAAGGTGGAAAATTTTCTTTATCTGTTTAAGTACCAGTATAAGATGATTCAAGGTTGAAGACACTACTCTTGTTAGTTGACAAGAAAGTGCTGCAAAACCCTGTGCCAGAATACCGAAGACATACTTTCTGGTATCTGAAACTCTCTTATCCTTGCAACTGGAAGTACTAATGAGACTGGAAATAGGCAAATACATAGAATGCAGCGTTTAAATTGTTTTGTACTCTTAACTGGCCCCCTTAAACAGCATTGGCAACAGGAGTAGGAGTTAAACATGTTTAAATTAAGGGTGCATATCTGAGTGGAAACTGACATGCTATGGCAACGCCAAGTAAGAAGATATTTAGCTTGATTGGGCCATCGTCATATAAATCCATGGAAATGGTCTCCCATATTGGGTAAAAGTGCATCAATATAGCTGCAAAAGGAGAGACAATGGTAACAAATATAATACTGTGCTAGACCTTTTAAGGGGTGTGGCCCAAGGAGTTAGGAGAGGAGATGCGAGGAGCTCCACTTCGCCCAAGGAGTTTGTAGGCTTCCTAACTAAAACCCATCAATTTTGTGTCATATTAAATCGTTGCACTATGAGTCCTAGGAGCTGACAACTCCACTCCTTATCCGAAACACCCCTTTCGTAAGTGAGTGTGAAGCATAAGAGAGTCGGGAAGGAGTGACTTGGCATTAATCGAGAACTGTATTGGTTAGGATGGATGTAACTAGTTAGTTAGACCAGCATGAGCGGTGTGACTTGCGTAGTATTTAGAAGTGAGGTCAGGCCAGAGATAGGGAACTCTTGGATTCTCCCTTGGCTACACATTATTTAATATGAAGCAGTTTCTATCATATAATTTTTTCTTCCCATAAGGTAGAGATCTAGAAACAAGCTCATTAACTTTCATTAATGTCTACCAAAAGGGCACAAATAAAGGCAATAGTAAACACAGATGATCAGATAATAGTTGAATTCTTTTTCCTGTTTGGGAAAGGAACTGATACATTTTGCAGGTGAAATGGTCAAGAACAGTTTCAGGGCTCCATAATTCATGCCCTAAGTTTGTGTAATGAACCAACTATGATATTTCTGATTTCCACTGCTGAGACAACTGCATGCATTAAATACTGCTGATTGGATTGACTTATTTATGCAAAGAAACAAACATATTCAATATTTTACACAGCTTGCATTCCTCTTGCTTATCCATTTGGTAATCATCAGTTCTCAAATTATATGCATGTTAAGACTCATACCTACCAAATTGGGCCTTCCATCTTTAGTGCCTTTAACATCTTTTTCCTTTAGAAATGAAACAAGTTGCAATTTTTTAATCACCATGTGTGGTATCCCATTTATCATTCGCATGGCATTGGAAGGGAAGTAGTTGGGGGTGTACTTACTTCTGTCAAGGGAAATGAAGCACCTGGGAGATTTCTAGTACTCCCCTAGTATTATACTTCCTTTGTTCATACTATAAATTGGTCTTCATAAATGTTAGTAGATCCGACCCTACTTTTAAAAAGCGTGTTGTTGTGATACACAATAAATGGAGGGAGTTTTTCGTAGTCTCATAGTAAAGAAAATTATCCCCAACTCATTGTCATCCTTTAAACAACTTTTGGTAAGAAGTAATTTGTAGTAATCACTACACAACAAAAATTGTCGAGTTTCACTTGTATCTATTGATCGTATGTTATGTGACTTAATCTTATAAATGTCTTGTTTCTGGTTGCATTTATGATTCATATTGTTGTGCTATTCTTCAAATTTCATTAAGACAATGATTTCATTTTGAAACCTTATATTAAGTTTTTCTTTGGTTCATCAACTTGACACCGAATTTCTCGTGTTTTTCGACCGGGAAATGTTCTGTAAAATCATTCCCACACCATTTCTGATGCTGTTTTTGTATCCTTTATATGCAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCGTATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTGGAAATTAGATCCTTTCTGATTCTTTATATGGGTTGTGGTTTTTCTTTTTCTTTTACAAATATTTATATATTTATTTTCAATTCTATGAATTGAAATAATGATTGTCTATAAGATAAATATCTCACGTTTAAAATTGTGTTAAATGTAGTATATATGATTGTGTTTTAATTCCGAA

mRNA sequence

AAGGATTGCGAGTGGAAACTCTCAACCAACAACCACAACACTCAGTGATCCTCTTTGCATTGATGAAGAAAAAGAAACAAAGTCAAATAGAAGAGAATGGATGTTGGTTGCAAATCCAATAGAGATGGAAGTCTTATCCATACATACAAGATGATGCAAACTTGCAATTATAAGTGAACTTTAAAGAGAATTTAAGAAGAACTGGGAGTTTCGAACCCGCGCTGAAGAAGAGGAACCAAAGAAAGAATTATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATTGGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAGCATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCGTATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTGGAAATTAGATCCTTTCTGATTCTTTATATGGGTTGTGGTTTTTCTTTTTCTTTTACAAATATTTATATATTTATTTTCAATTCTATGAATTGAAATAATGATTGTCTATAAGATAAATATCTCACGTTTAAAATTGTGTTAAATGTAGTATATATGATTGTGTTTTAATTCCGAA

Coding sequence (CDS)

ATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATTGGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAGCATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCGTATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTGGAAATTAGATCCTTTCTGA

Protein sequence

MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
Homology
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BLAST of MELO3C024009.2 vs. NCBI nr
Match: XP_008461838.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_008461839.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 1.3e-94
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI 120
           VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 170
           SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
Sbjct: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

[Close]
BLAST of MELO3C024009.2 vs. NCBI nr
Match: XP_004151512.1 (PREDICTED: structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypothetical protein Csa_3G683170 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 6.6e-83
Identity = 154/170 (90.59%), Postives = 160/170 (94.12%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60
           MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHGFKDQSQACEFESKWKKVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 170
           ISYEKKE+DVGK LD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]
BLAST of MELO3C024009.2 vs. NCBI nr
Match: XP_022934184.1 (structure-specific endonuclease subunit slx1 [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 3.5e-68
Identity = 132/168 (78.57%), Postives = 147/168 (87.50%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN PIKTY
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVK-SEPEPKKWCVYLIISSNPPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI 120
           VGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGFKDQSQACEFESKWK++ RK+
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKM 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP 169
            + +KE     ++D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Sbjct: 121 CHMRKE-----EVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

[Close]
BLAST of MELO3C024009.2 vs. NCBI nr
Match: XP_022982643.1 (structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 266.5 bits (680), Expect = 6.0e-68
Identity = 131/169 (77.51%), Postives = 148/169 (87.57%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFR QK PIS+P + KSSSSSTK PTL +K  EP+ K+WCVYLIISSN PIKTY
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIK-SEPETKKWCVYLIISSNPPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI 120
           VGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGFK+QSQACEFESKWK++ RK+
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKNQSQACEFESKWKEICRKM 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 170
           S+ +KE     ++D+QTLRLLK RQRALGKVK LFDC+ FEFDW+LDPF
Sbjct: 121 SHMRKE-----EVDDQTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPF 163

[Close]
BLAST of MELO3C024009.2 vs. NCBI nr
Match: XP_023528241.1 (structure-specific endonuclease subunit slx1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 133/170 (78.24%), Postives = 148/170 (87.06%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSS-STKGPTLIVKLEEPKPKQWCVYLIISSNSPIKT 60
           MRLLSQTFR QK PIS+  + KSSSS STK PTLIVK  EP+PK+WCVYLIISSN PIKT
Sbjct: 2   MRLLSQTFRSQKLPISSSEVSKSSSSASTKVPTLIVK-SEPEPKKWCVYLIISSNPPIKT 61

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGFKDQSQACEFESKWK++ RK
Sbjct: 62  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRK 121

Query: 121 ISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 170
           + + +KE     ++D+QTLRLLK RQRALGKVK LFDC+ FEFDW+LDPF
Sbjct: 122 MCHMRKE-----EVDDQTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPF 165

[Close]
BLAST of MELO3C024009.2 vs. TAIR10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-42
Identity = 91/173 (52.60%), Postives = 114/173 (65.90%), Query Frame = 0 

Query: 2   RLLSQTFRCQKPPISNPRLP-----KSSSSSTKGPTLIVKLEE---PKPKQWCVYLIISS 61
           RLLS+TF   K   SNP+ P     K+S +    P+     E    PK K W VYLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKW 121
             PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+CAC I GF   SQA  FESKW
Sbjct: 63  TEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCLSQASSFESKW 122

Query: 122 KKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKL 167
           K  +RK+   KK++D+     +Q+  LL+HR+RAL KV+   DCS+ E DWK+
Sbjct: 123 KIFTRKLPRRKKDEDM-----SQSDALLQHRRRALNKVEESLDCSYLETDWKI 170

[Close]
BLAST of MELO3C024009.2 vs. TAIR10
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 0 

Query: 58  KTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWK 115
           +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+
Sbjct: 43  QTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQFEWAWQ 99

[Close]
BLAST of MELO3C024009.2 vs. Swiss-Prot
Match: sp|B6JY16|SLX1_SCHJY (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) OX=402676 GN=slx1 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.4e-13
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 0 

Query: 45  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ 104
           +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +
Sbjct: 3   YCCYLLVSEKAASRSVYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTK 62

Query: 105 SQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKC 154
             A +FE  W+        + ++      +  QTL       RALG + C
Sbjct: 63  IAALQFEWVWQHPQSTRHDDLRQHSRVVSVKRQTLLSC---VRALGVMLC 109

[Close]
BLAST of MELO3C024009.2 vs. Swiss-Prot
Match: sp|Q9P7M3|SLX1_SCHPO (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx1 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 0 

Query: 45  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKD 104
           +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPN 66

Query: 105 QSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLK 143
           +  A +FE  W+ +   IS   K+ D   +     +  LK
Sbjct: 67  KVSALKFEWNWQNLG--ISRYTKDCDFRSKKQKTIMYCLK 104

[Close]
BLAST of MELO3C024009.2 vs. Swiss-Prot
Match: sp|B8MDD1|SLX1_TALSN (Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=slx1 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 0 

Query: 37  LEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAG--RPWICA 96
           L +P P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T+    RPW   
Sbjct: 11  LTKPIPAFYCCYLLRSAKRPSALYIGSTPDPARRLEQHNGFAKGGAKRTERNTLRPWEMV 70

Query: 97  CTIHGFKDQSQACEFESKWKKV 117
             + GF  ++ A +FE  W+ V
Sbjct: 71  AIVEGFPSRTGALQFEWSWQHV 92

[Close]
BLAST of MELO3C024009.2 vs. Swiss-Prot
Match: sp|B6QFH5|SLX1_TALMQ (Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) OX=441960 GN=slx1 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-11
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 0 

Query: 39  EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAG--RPWICACT 98
           +P P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T+    RPW     
Sbjct: 13  KPIPAFYCCYLLRSVKKPSSLYIGSTPDPARRLEQHNGFTKGGAKRTERDTLRPWEMITI 72

Query: 99  IHGFKDQSQACEFESKWKKV 117
           I GF  ++ A +FE  W+ V
Sbjct: 73  IEGFTSRTGALQFEWSWQHV 92

[Close]
BLAST of MELO3C024009.2 vs. Swiss-Prot
Match: sp|A8PWH1|SLX1_MALGO (Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) OX=425265 GN=SLX1 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 0 

Query: 37  LEEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACT 96
           +E   P+ +  Y + S + P +TY+G T D  RRL+QHNG +K GA  T+  RPW     
Sbjct: 7   VEHRTPRVYVCYCLRSLSRPNQTYIGSTPDPIRRLRQHNGLVKQGAFYTRMARPWTMDVV 66

Query: 97  IHGFKDQSQACEFESKWKK 116
           ++GF  +  A +FE  W+K
Sbjct: 67  VYGFPSKLAALQFEWSWQK 85

[Close]
BLAST of MELO3C024009.2 vs. TrEMBL
Match: tr|A0A1S3CFH5|A0A1S3CFH5_CUCME (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 8.5e-95
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60
           MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60

Query: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI 120
           VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 170
           SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
Sbjct: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

[Close]
BLAST of MELO3C024009.2 vs. TrEMBL
Match: tr|A0A0A0LCZ9|A0A0A0LCZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 4.4e-83
Identity = 154/170 (90.59%), Postives = 160/170 (94.12%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60
           MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHGFKDQSQACEFESKWKKVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 170
           ISYEKKE+DVGK LD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]
BLAST of MELO3C024009.2 vs. TrEMBL
Match: tr|A0A061DUV7|A0A061DUV7_THECC (LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_005809 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.8e-49
Identity = 103/169 (60.95%), Postives = 125/169 (73.96%), Query Frame = 0 

Query: 1    MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60
            MRLL+ TFR  K P  NP   K SSS + G + I K    K K WCVYLI+S+N+PIKTY
Sbjct: 1124 MRLLTATFRSVKHP--NPDFIKPSSSLSSGSSPIAK---SKTKSWCVYLILSTNAPIKTY 1183

Query: 61   VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI 120
            VGVT DF RRLKQHNGE+KGGAKA++AGRPWICAC I GF DQS+ACEFESKWK+ SRK+
Sbjct: 1184 VGVTTDFSRRLKQHNGELKGGAKASRAGRPWICACIIRGFNDQSEACEFESKWKRFSRKL 1243

Query: 121  SYEKKEDDVGKQLDNQ--TLRLLKHRQRALGKVKCLFDCSHFEFDWKLD 168
              ++K  D+ K++D    +L LL+HRQ AL +VK   DCSH E DW+L+
Sbjct: 1244 PCKRKNSDLTKEVDEDDGSLTLLQHRQTALNRVKGSLDCSHLEIDWQLN 1287

[Close]
BLAST of MELO3C024009.2 vs. TrEMBL
Match: tr|A0A1R3K156|A0A1R3K156_9ROSI (GIY-YIG nuclease superfamily OS=Corchorus olitorius OX=93759 GN=COLO4_12325 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.6e-48
Identity = 100/169 (59.17%), Postives = 122/169 (72.19%), Query Frame = 0 

Query: 1    MRLLSQTFRCQKPPISNPR--LPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIK 60
            MRLL+ TFR  K P  NP    P SS  S   P    KL+      W VYLI+S+N PIK
Sbjct: 1273 MRLLTTTFRSVKHPTPNPNSLKPPSSLPSASKPIAKSKLK----SSWSVYLILSTNHPIK 1332

Query: 61   TYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSR 120
            TYVGVT DF RRLKQHNGE+KGGAKA++AGRPWICAC I GF D+S+ACEFESKWK+ SR
Sbjct: 1333 TYVGVTTDFSRRLKQHNGELKGGAKASRAGRPWICACIIRGFNDRSEACEFESKWKRFSR 1392

Query: 121  KISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLD 168
            K+  ++K DD+ K++D+ +L LL+HRQ AL +VK  FDC H E DW+L+
Sbjct: 1393 KMPRKRKNDDLTKEVDDGSLTLLQHRQTALNRVKGSFDCGHLEIDWQLN 1437

[Close]
BLAST of MELO3C024009.2 vs. TrEMBL
Match: tr|M5X494|M5X494_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G025000 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.3e-47
Identity = 102/175 (58.29%), Postives = 125/175 (71.43%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEE-------PKPKQWCVYLIISS 60
           M+ LS+TF   K P  NP+ PK SS     P   +K EE          + W VYLI+S+
Sbjct: 1   MQRLSRTFPSVKHP--NPKSPKISSFPRSLP---IKSEEATLNSPSKSRRSWSVYLILST 60

Query: 61  NSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKW 120
           N+PIKTYVGVT DF RRLKQHNGE+KGGAKA+ AGRPWICAC IHGFKDQS+ACEFESKW
Sbjct: 61  NTPIKTYVGVTTDFSRRLKQHNGELKGGAKASCAGRPWICACLIHGFKDQSEACEFESKW 120

Query: 121 KKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP 169
           K +SR +S ++K D+  +Q+ + +L LL+HRQ AL +VK L DC+H E DWKL P
Sbjct: 121 KSLSRSLSRKRKNDNKVEQVKDLSLPLLQHRQAALNRVKGLLDCTHLEIDWKLGP 170

The following BLAST results are available for this feature:
BLAST of MELO3C024009.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461838.11.3e-94100.00PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_00846... [more]
XP_004151512.16.6e-8390.59PREDICTED: structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58... [more]
XP_022934184.13.5e-6878.57structure-specific endonuclease subunit slx1 [Cucurbita moschata][more]
XP_022982643.16.0e-6877.51structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima][more]
XP_023528241.13.0e-6778.24structure-specific endonuclease subunit slx1 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C024009.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43210.13.1e-4252.60Excinuclease ABC, C subunit, N-terminal[more]
AT2G30350.21.3e-0843.86Excinuclease ABC, C subunit, N-terminal[more]
BLAST of MELO3C024009.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|B6JY16|SLX1_SCHJY8.4e-1338.18Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s... [more]
sp|Q9P7M3|SLX1_SCHPO1.2e-1139.00Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai... [more]
sp|B8MDD1|SLX1_TALSN1.6e-1142.68Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain A... [more]
sp|B6QFH5|SLX1_TALMQ7.8e-1143.75Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain AT... [more]
sp|A8PWH1|SLX1_MALGO2.3e-1039.24Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC ... [more]
BLAST of MELO3C024009.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CFH5|A0A1S3CFH5_CUCME8.5e-95100.00structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
tr|A0A0A0LCZ9|A0A0A0LCZ9_CUCSA4.4e-8390.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1[more]
tr|A0A061DUV7|A0A061DUV7_THECC1.8e-4960.95LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1... [more]
tr|A0A1R3K156|A0A1R3K156_9ROSI1.6e-4859.17GIY-YIG nuclease superfamily OS=Corchorus olitorius OX=93759 GN=COLO4_12325 PE=4... [more]
tr|M5X494|M5X494_PRUPE1.3e-4758.29Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G025000 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_endonuc
IPR035901GIY-YIG_endonuc_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0043531 ADP binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024009.2.1MELO3C024009.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035901GIY-YIG endonuclease superfamilyGENE3DG3DSA:3.40.1440.10coord: 39..147
e-value: 2.5E-16
score: 61.4
IPR035901GIY-YIG endonuclease superfamilySUPERFAMILYSSF82771GIY-YIG endonucleasecoord: 44..120
IPR000305GIY-YIG endonucleasePFAMPF01541GIY-YIGcoord: 44..119
e-value: 1.7E-15
score: 57.0
IPR000305GIY-YIG endonucleasePROSITEPS50164GIY_YIGcoord: 43..124
score: 17.649
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR20208:SF13EMB|CAB76036.1coord: 21..167
NoneNo IPR availablePANTHERPTHR20208FAMILY NOT NAMEDcoord: 21..167

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C024009.2Csa3G683170Cucumber (Chinese Long) v2cumedB193
MELO3C024009.2CSPI03G29380Wild cucumber (PI 183967)cpimedB193
MELO3C024009.2Cucsa.192730Cucumber (Gy14) v1cgymedB342
MELO3C024009.2CmaCh14G009770Cucurbita maxima (Rimu)cmamedB257
MELO3C024009.2CmoCh14G010010Cucurbita moschata (Rifu)cmomedB239
MELO3C024009.2Lsi03G011810Bottle gourd (USVL1VR-Ls)lsimedB273
MELO3C024009.2Cp4.1LG03g04710Cucurbita pepo (Zucchini)cpemedB673
MELO3C024009.2CsGy3G027230Cucumber (Gy14) v2cgybmedB173
MELO3C024009.2ClCG10G012070Watermelon (Charleston Gray)medwcgB309
MELO3C024009.2Cla97C10G194880Watermelon (97103) v2medwmbB305
MELO3C024009.2Carg11199Silver-seed gourdcarmedB0822
MELO3C024009.2CsaV3_3G031830Cucumber (Chinese Long) v3cucmedB198
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024009.2Cucumber (Gy14) v2cgybmedB485
MELO3C024009.2Cucumber (Gy14) v1cgymedB203
MELO3C024009.2Cucurbita maxima (Rimu)cmamedB387
MELO3C024009.2Cucurbita maxima (Rimu)cmamedB489
MELO3C024009.2Cucurbita maxima (Rimu)cmamedB943
MELO3C024009.2Cucurbita moschata (Rifu)cmomedB374
MELO3C024009.2Cucurbita moschata (Rifu)cmomedB476
MELO3C024009.2Cucurbita moschata (Rifu)cmomedB932
MELO3C024009.2Cucurbita pepo (Zucchini)cpemedB160
MELO3C024009.2Cucurbita pepo (Zucchini)cpemedB360
MELO3C024009.2Cucurbita pepo (Zucchini)cpemedB615
MELO3C024009.2Wild cucumber (PI 183967)cpimedB544
MELO3C024009.2Cucumber (Chinese Long) v2cumedB528
MELO3C024009.2Melon (DHL92) v3.6.1medmedB084
MELO3C024009.2Bottle gourd (USVL1VR-Ls)lsimedB221
MELO3C024009.2Watermelon (Charleston Gray)medwcgB308
MELO3C024009.2Watermelon (97103) v1medwmB343
MELO3C024009.2Watermelon (97103) v1medwmB344
MELO3C024009.2Silver-seed gourdcarmedB0460
MELO3C024009.2Silver-seed gourdcarmedB0770
MELO3C024009.2Cucumber (Chinese Long) v3cucmedB556
MELO3C024009.2Watermelon (97103) v2medwmbB357
MELO3C024009.2Wax gourdmedwgoB375
MELO3C024009.2Wax gourdmedwgoB443