ClCG10G012070 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G012070
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Structure-specific endonuclease subunit SLX1 homolog
Location	CG_Chr10 : 26002303 .. 26006660 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATGAAAGAAAGAATATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCCGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGGTATCTCGAATTTCTTCCTTTCCGTTTCTTGTTCGAACCACCGATTCCATGATTTGATGTGTGAAAATTTATCTGGGTCATGTTCGATTGGCCTTAAAAAGTGATATTTCGTGCTTTTAGCTTAGACATTTAGCTTGGTATTGTTTAATCATCAATTCAATCCAAAATATTAAAAAACAGATAGGTTATGGTAAATTGAATAATTTATTTAATACCTTGTTGCTGTTGTTGTGGGCTTGAAAGGTTGCACAAGGTGCAAGAAATTGTTGTACGAATGATCCCAATTCCACGGCGGAAATGTTGTTGAGCCATACTTTGAAAATAAGGATGTACAACCTTTTGCTTGCGTCACTCCCTCGCATTGGTGTTCGTCCTCCCTCCTTGCATTCGACTAATCCAATACAACAGTTTCCTCACACACTAGGTCTTTTCCTCCCCCACTCTCTCTACTCTTCCTCTCTTTCACTCACGCTCGTCACTCTGAAAAAAAGTGTTGGCAAGCGGTTTGTGGCATCATCAAAAGTTTATTCTTCATTGTTTTCAAAACTTGGGTCAAACACATTTTAGGCGTGGTATTTGAGTCATTTGTACGAAAATCTTAAAAGTCCAAAGAGTGGTAATCGTTGTTAAGTGAAGAGGAAATGACATTACACAAGTTCGAGATTTCCTACTATATCATGTTTCATCGCCAATTAAAAAGCTTAAGCTTGCATTGGTGGTTTATGGTGGTTTTAATATTTTATCAATACTATAGAGCACGTAACTAAACTTGAGTCACAATTTGGTGCATGAAGATGAGGTTGGTCATTGAAAAAGAACTTTGGGTTAGCTGTTCAACTGCTCGATTAATCGGTCGAGGTATTGATTTTCAGTAGAGTTTGTAAGTTAGGGAGTGTTTTGGGATGATATTCATATTGTTGAGAAGTTATGTTATGAGAGGATAGTGGAGGTTGAGGGCAGAGAAGTTTCAATAATTGTGAATATGCGTCTGACTTAAAGTCAATAATCAATTCTGAAAAATGAAGTACTGTTCAAGATGTTTCATGGTTCTTATCAAGAGATATGCTTTAAATGTAAGAGATATGCTTTAAATGTTTTTTTAACTCCAGATCCTATCCTCTAGTGAATTCAATTGCCAAAGAAATTTGCACTTTGCAACTTTTAGATGTCCTTTATGTGTAAGAGGTATTCAAATATTACTTAACGTCATAAAGTTGTATTCTTGTACAGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGCTTTGCGCATGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATCCATTCAAAATAGAACTTCTAGAATCATGCTGCAAGTTGGGCTCCAATTTCAAGGGCATTGCTTGATTGTTTGTAGTCATTCTAGACATTATGTTTCCTTGGGCTTTTGAAAACATGAGACATTACCTTGTTTCTTTGTTGTGGCAGTGATCCTGCTAAGTTAGATGGCAATGGTCAGATGTATTTCATATTTTACGGCACTGTGAGAACTATTTCCTTGAGGAACAATCTTTATTCAATGATCTACCTCAATATTTATTATAAGATGCATCCTAATCACCATAAGTTGGCCTTGTGATTAAAAAGGACCATGTAAATAATAAAGACCTTAGAGGGAATAGGTTTCAATCATGATGGTCACCTACTGAGGATTTAATGTCCTATGAGTTACCTTGGCAACCAAAGTAGTAGGATTAGGTAGCTTTTCTGTGAAAATAGTATAGATGCGTGTAAGCTAGCTTGAAAGATCATGAATATTTAAATAAATAAATAAAAATAATAAATAATAAAACTTTTACATTTTCTTAGAAGCCTGAAAATACTTTACGTGGAGGAGAGAAACCTGATAGCATTCCTCCTCCTAAATCCTTATATAAATGCGATGTTTTCCTTTTTGATAAGTATAAAGAAATAGTAGAATCAAGGCCAGAGAAGATTTCCCTGGTGAGTGGATCTGTAAGTACAGCAGAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTACTTGCAGTTGAAGAAGTGATGGGGGCAGAGGGAGGCAAAAGATAACGTGGTGACTTGGGATTTCATTTCATACTCCAAAAGACACTAGGAATAAGAAGAAATTTTAGATCATCACGCCGAAACACCCTAAAATTTTAACTCATCATAAAAGGTTGAAAATTTGCTTTCTGTTCATGATACAAATATAAATTCATCCAAGGTTGAAGGCGCTACTCTAGTCGGTAGACCAGCAAAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCGTAGGCATACATTCTGGTATCTGAAACTTCTTATCCTAGCAACATAACTAGAAGTAATAATGAGACTGAAAATATATTGGCAAACACACAATGTAGTATGCGATATTTGAGACTGAAAATAGGAAAATATATTATGTAGTATGCAGCATTTGAACTGTTTGGTACTCTTAAGTTCTTAATTGGCCCCCCAAAACAACATTGGTAATTGGAGTAGGAGTTGAACATTTCTAAATTAAGGGTGCATATCTGGCTGGAAACTAACCTCCTAATCTTGAACTATATAACGGTGCAACCTGCGAGTTAAGAGTATTTAGGAGTGAGATCAGGACAGAGATAGGAAACTCTTGGATACTCCCTTAGCTACACATTCTTTAATAATTAAACGGTTGCTATCATTTTTTCCCCCATAAAGTAGAGATCTAGAAACAAGCTCATGAATTTCGTTAATATCTATGAGAGGAGCACGAATGAATGCAATAATAAATACAGACACTGATAAGATTATAGTGGAATTCTTTTTCCCTGTTTGGGAAAGGAACACAAATTTTGCAGGTGAATTGGTAAAGGACAGTTTCAGGGCTCCATAATCCATGCCCCAAATTTGTGTAATACACCAGCCATGATATTTATGATTTCCATGGATGAGACAACTACATGCATAAGTATTGCTGTTTGGATTGACTTATTTATGCAAATAAACAGACTTATTCAATATATTTTTACAGCTTGCATATTGCAACCGGCATTCCTCTTGCTTGTCTATTTGGTTAATCATCAGCTCTCAAATTATATGCATGTTAAGACTCATACCTACCAAATTTGGCCTTCCATCTTTGGTGTATTTAGTTTTTTTTTCCTTTAGAAATGAAAAAAGCCGCAACTTTCAGATCACCATGGTATCCCATTTATCATCACATGGCATTGGAAGGGGTGTAGTTCAGAGTGCTATTATTGCTAACGAGGCAAATGAAGTAATTGAAAAGATTTCTAGTACTCTCATAGTACTATAATCCATTTGTTCCCGCTATAAATTGGTCTTCATAAATGTTAGTGGACCAACTCTATTTAAAAAAAAAATTAAAAAACGTGCTGATGTGGCACACTATAAATAGAGGGAGGTATGGAAAATTTTCTACACTCCCGTAGTATAGGAAATCTTCCCAACTCGTTGTCATCATCTGGATGACTTTTGGCAAGAAGTAACCCGTATTACTGACTGTGGAACTTAAATCGTCGAGTTTCACTTGTGTTTGTTGATTGTATGTTATGGATGGGGTGCTGAATTAATTTGATGAAGATCTTGTTTCTGGTTGAATTTATGATTTATATAGTTGTTGCTATGAGCATTCTTCAAGTTCATGTCCCTAAATCATTCCTAAGAAATTTTATCGACACAATGACTTTTATTTGAAATCTTATACTAAGTTTTATTTGGTTCAACCCAATAATCGAATTCTCGAGTTTTTCGACCAGAAATGTTCTGTAAAATCATTCCCACCTCATTACTGATGCTGTTTTTGTATCTTTTATATGCAGCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAACCAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAATGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCCTTTCTGATTCTTTACATGGGTTGGGGTTTTTCTTTTTCTTTTACCATATTTA

mRNA sequence

GAATGAAAGAAAGAATATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCCGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGCTTTGCGCATGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAACCAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAATGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCCTTTCTGATTCTTTACATGGGTTGGGGTTTTTCTTTTTCTTTTACCATATTTA

Coding sequence (CDS)

ATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCCGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGCTTTGCGCATGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAACCAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAATGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCCTTTCTGA

Protein sequence

MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKWKEVSRKISYKKKDDMGKQVDDQPIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

Homology

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BLAST of ClCG10G012070 vs. Swiss-Prot
Match: SLX1_TALMQ (Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=slx1 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-13
Identity = 42/104 (40.38%), Postives = 54/104 (51.92%), Query Frame = 1


Query: 39  PKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRLKQHNGEIKGGAKATRAG--RPWLCAC 98
           PKP P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW    
Sbjct: 12  PKPIPAFYCCYLLRSVKKPSSLYIGSTPDPARRLEQHNGFTKGGAKRTERDTLRPWEMIT 71

Query: 99  TIHGFKDQSQACEFETKWKEV--SRKISYKKKDDMGKQVDDQPI 139
            I GF  ++ A +FE  W+ V  +R I   + D + ++  D P+
Sbjct: 72  IIEGFTSRTGALQFEWSWQHVHTTRHIGAVETDQLNRRRKDPPV 115

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BLAST of ClCG10G012070 vs. Swiss-Prot
Match: SLX1_SCHJY (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=slx1 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-13
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 46  WCVYLIISSNSPIKT-YVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQ 105
           +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +
Sbjct: 3   YCCYLLVSEKAASRSVYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTK 62

Query: 106 SQACEFETKWK 116
             A +FE  W+
Sbjct: 63  IAALQFEWVWQ 73

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BLAST of ClCG10G012070 vs. Swiss-Prot
Match: SLX1_TALSN (Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=slx1 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.3e-12
Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 1


Query: 40  KPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRLKQHNGEIKGGAKATRAG--RPWLCACT 99
           KP P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     
Sbjct: 13  KPIPAFYCCYLLRSAKRPSALYIGSTPDPARRLEQHNGFAKGGAKRTERNTLRPWEMVAI 72

Query: 100 IHGFKDQSQACEFETKWKEV--SRKISYKKKDDMGKQVDDQP 138
           + GF  ++ A +FE  W+ V  +R I   + D + ++  + P
Sbjct: 73  VEGFPSRTGALQFEWSWQHVHTTRHIGAVETDQLNRKRKNPP 114

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BLAST of ClCG10G012070 vs. Swiss-Prot
Match: SLX1_SCHPO (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slx1 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.1e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1


Query: 46  WCVYLIISSNSPIK--TYVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKD 105
           +C YL+ S+ +      Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPN 66

Query: 106 QSQACEFETKWKEVSRKISYKKKD 128
           +  A +FE  W+ +   IS   KD
Sbjct: 67  KVSALKFEWNWQNLG--ISRYTKD 88

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BLAST of ClCG10G012070 vs. Swiss-Prot
Match: SLX1_PENRW (Structure-specific endonuclease subunit slx1 OS=Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) GN=slx1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10
Identity = 36/94 (38.30%), Postives = 45/94 (47.87%), Query Frame = 1


Query: 38  EPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRLKQHNGEIKGGAKATRAG--RPWLCA 97
           +PKP P  +C YL+ S+      Y+G T +  RRL QHNG  KGGAK T     RPW   
Sbjct: 6   KPKPIPAYYCCYLLRSTVRHASLYIGSTPNPIRRLPQHNGVAKGGAKRTARDKLRPWEMT 65

Query: 98  CTIHGFKDQSQACEFETKWKEVSRKISYKKKDDM 130
             + GF  +  A +FE  W+   R       DD+
Sbjct: 66  LVVEGFTSRVGALQFEWAWQHPERSRHLDSDDDL 99

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BLAST of ClCG10G012070 vs. TrEMBL
Match: A0A0A0LCZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 1.8e-83
Identity = 150/170 (88.24%), Postives = 161/170 (94.71%), Query Frame = 1


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLSHTFRC KPPISNP LSKSSSSS+KD TL+VKSEPKP  KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKWKEVSRK 120
           YVGVTLD DRRLKQHNGEIKGGAKATRAGRPW+CACTIHGFKDQSQACEFE+KWK+VSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISY-KKKDDMGKQVDDQPIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF 170
           ISY KK++D+GK +DDQ +RLLKHR+RALGKVKCLFDCSQFEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

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BLAST of ClCG10G012070 vs. TrEMBL
Match: A0A061DUV7_THECC (LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1 OS=Theobroma cacao GN=TCM_005809 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.7e-47
Identity = 100/170 (58.82%), Postives = 123/170 (72.35%), Query Frame = 1


Query: 1    MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
            MRLL+ TFR  K P  NP   K SSS +   + + KS+ K     WCVYLI+S+N+PIKT
Sbjct: 1124 MRLLTATFRSVKHP--NPDFIKPSSSLSSGSSPIAKSKTK----SWCVYLILSTNAPIKT 1183

Query: 61   YVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKWKEVSRK 120
            YVGVT D  RRLKQHNGE+KGGAKA+RAGRPW+CAC I GF DQS+ACEFE+KWK  SRK
Sbjct: 1184 YVGVTTDFSRRLKQHNGELKGGAKASRAGRPWICACIIRGFNDQSEACEFESKWKRFSRK 1243

Query: 121  ISYKKKD-DMGKQV--DDQPIRLLKHRQRALGKVKCLFDCSQFEFDWKLD 168
            +  K+K+ D+ K+V  DD  + LL+HRQ AL +VK   DCS  E DW+L+
Sbjct: 1244 LPCKRKNSDLTKEVDEDDGSLTLLQHRQTALNRVKGSLDCSHLEIDWQLN 1287

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BLAST of ClCG10G012070 vs. TrEMBL
Match: A0A072TLC3_MEDTR (Structure-specific endonuclease subunit SLX1-like protein OS=Medicago truncatula GN=MTR_0003s0480 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.1e-47
Identity = 99/171 (57.89%), Postives = 124/171 (72.51%), Query Frame = 1


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MR LS TFR  K PISNP+LSK SSSS K   L    +PK     WCVYLI+S+N PIKT
Sbjct: 1   MRTLSQTFRSIKRPISNPKLSKCSSSSPKKSEL----KPKSESSSWCVYLILSTNHPIKT 60

Query: 61  YVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKWKEVSRK 120
           YVGVT +  RRLK+HNG++KGGAKA+RAGRPW+CAC + GF ++S+AC FE+KWK +SR+
Sbjct: 61  YVGVTTNFPRRLKEHNGDLKGGAKASRAGRPWICACIVCGFTNRSEACVFESKWKALSRR 120

Query: 121 ISYKKK-DDMGKQVD-DQPIR-LLKHRQRALGKVKCLFDCSQFEFDWKLDP 169
           +  KK+ DD  KQ + + P R LL+HRQ AL +VK   DC+  E +W LDP
Sbjct: 121 VPRKKQNDDSSKQSESEDPSRPLLQHRQAALNRVKTSLDCTNLEINWHLDP 167

[Close]

BLAST of ClCG10G012070 vs. TrEMBL
Match: M5X494_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015867mg PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.8e-46
Identity = 100/175 (57.14%), Postives = 123/175 (70.29%), Query Frame = 1


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSE------PKPNPKQWCVYLIISS 60
           M+ LS TF   K P  NP+  K SS      +L +KSE      P  + + W VYLI+S+
Sbjct: 1   MQRLSRTFPSVKHP--NPKSPKISSFPR---SLPIKSEEATLNSPSKSRRSWSVYLILST 60

Query: 61  NSPIKTYVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKW 120
           N+PIKTYVGVT D  RRLKQHNGE+KGGAKA+ AGRPW+CAC IHGFKDQS+ACEFE+KW
Sbjct: 61  NTPIKTYVGVTTDFSRRLKQHNGELKGGAKASCAGRPWICACLIHGFKDQSEACEFESKW 120

Query: 121 KEVSRKISYKKK-DDMGKQVDDQPIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP 169
           K +SR +S K+K D+  +QV D  + LL+HRQ AL +VK L DC+  E DWKL P
Sbjct: 121 KSLSRSLSRKRKNDNKVEQVKDLSLPLLQHRQAALNRVKGLLDCTHLEIDWKLGP 170

[Close]

BLAST of ClCG10G012070 vs. TrEMBL
Match: A0A151TLN7_CAJCA (Structure-specific endonuclease subunit slx1 OS=Cajanus cajan GN=KK1_021589 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.2e-44
Identity = 93/169 (55.03%), Postives = 114/169 (67.46%), Query Frame = 1


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MR LS  FR  K P  NP+LSKSSS +  +         KP  + WCVYLI+S+N PIKT
Sbjct: 2   MRTLSTQFRSVKRPNPNPKLSKSSSPAKSE-------NAKPKSEPWCVYLILSTNHPIKT 61

Query: 61  YVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKWKEVSRK 120
           YVGVT +  RRLKQHNGE+KGGAKA+RAGRPW+CAC + GF D+S AC FE+KWK  SR+
Sbjct: 62  YVGVTNNFPRRLKQHNGELKGGAKASRAGRPWICACIVCGFTDRSDACVFESKWKAFSRR 121

Query: 121 ISYK-KKDDMGKQVDDQPIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP 169
              K K DD+  Q +D  + LL+HRQ AL +VK   DC+  +  W LDP
Sbjct: 122 APRKNKNDDLSMQSEDPSLPLLRHRQAALSRVKGSLDCTNLQIIWHLDP 163

[Close]

BLAST of ClCG10G012070 vs. TAIR10
Match: AT5G43210.1 (AT5G43210.1 Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-40
Identity = 89/172 (51.74%), Postives = 107/172 (62.21%), Query Frame = 1


Query: 2   RLLSHTFRCQKPPISNPQLS--KSSSSSNKDLTLVVKSEPK-----PNPKQWCVYLIISS 61
           RLLS TF   K   SNP+    K+  +S   + +   S P+     P  K W VYLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPIKTYVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKW 121
             PIKTYVG+T D  RRLKQHNGEI+GGAKA+ AGRPWLCAC I GF   SQA  FE+KW
Sbjct: 63  TEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCLSQASSFESKW 122

Query: 122 KEVSRKISYKKKDDMGKQVDDQPIRLLKHRQRALGKVKCLFDCSQFEFDWKL 167
           K  +RK+  +KKD+   Q D     LL+HR+RAL KV+   DCS  E DWK+
Sbjct: 123 KIFTRKLPRRKKDEDMSQSD----ALLQHRRRALNKVEESLDCSYLETDWKI 170

[Close]

BLAST of ClCG10G012070 vs. TAIR10
Match: AT2G30350.2 (AT2G30350.2 Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-09
Identity = 25/67 (37.31%), Postives = 37/67 (55.22%), Query Frame = 1


Query: 59  KTYVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKWKEVS 118
           +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+   
Sbjct: 43  QTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQFEWAWQHPR 102

Query: 119 RKISYKK 126
             ++ ++
Sbjct: 103 ESVAVRE 109

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BLAST of ClCG10G012070 vs. NCBI nr
Match: gi|449467603|ref|XP_004151512.1| (PREDICTED: structure-specific endonuclease subunit SLX1 [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 2.6e-83
Identity = 150/170 (88.24%), Postives = 161/170 (94.71%), Query Frame = 1


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLSHTFRC KPPISNP LSKSSSSS+KD TL+VKSEPKP  KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKWKEVSRK 120
           YVGVTLD DRRLKQHNGEIKGGAKATRAGRPW+CACTIHGFKDQSQACEFE+KWK+VSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISY-KKKDDMGKQVDDQPIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF 170
           ISY KK++D+GK +DDQ +RLLKHR+RALGKVKCLFDCSQFEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of ClCG10G012070 vs. NCBI nr
Match: gi|659123783|ref|XP_008461838.1| (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-79
Identity = 146/170 (85.88%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFRCQKPPISNP+L KSSSSS K  TL+VK E +P PKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKWKEVSRK 120
           YVGVTLD DRRLKQHNGEIKGGAKAT+AGRPW+CACTIHGFKDQSQACEFE+KWK+VSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISY-KKKDDMGKQVDDQPIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF 170
           ISY KK+DD+GKQ+D+Q +RLLKHRQRALGKVKCLFDCS FEFDWKLDPF
Sbjct: 121 ISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

[Close]

BLAST of ClCG10G012070 vs. NCBI nr
Match: gi|590724297|ref|XP_007052427.1| (LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 195.7 bits (496), Expect = 6.7e-47
Identity = 100/170 (58.82%), Postives = 123/170 (72.35%), Query Frame = 1


Query: 1    MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
            MRLL+ TFR  K P  NP   K SSS +   + + KS+ K     WCVYLI+S+N+PIKT
Sbjct: 1124 MRLLTATFRSVKHP--NPDFIKPSSSLSSGSSPIAKSKTK----SWCVYLILSTNAPIKT 1183

Query: 61   YVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKWKEVSRK 120
            YVGVT D  RRLKQHNGE+KGGAKA+RAGRPW+CAC I GF DQS+ACEFE+KWK  SRK
Sbjct: 1184 YVGVTTDFSRRLKQHNGELKGGAKASRAGRPWICACIIRGFNDQSEACEFESKWKRFSRK 1243

Query: 121  ISYKKKD-DMGKQV--DDQPIRLLKHRQRALGKVKCLFDCSQFEFDWKLD 168
            +  K+K+ D+ K+V  DD  + LL+HRQ AL +VK   DCS  E DW+L+
Sbjct: 1244 LPCKRKNSDLTKEVDEDDGSLTLLQHRQTALNRVKGSLDCSHLEIDWQLN 1287

[Close]

BLAST of ClCG10G012070 vs. NCBI nr
Match: gi|922328491|ref|XP_013443638.1| (structure-specific endonuclease subunit SLX1-like protein [Medicago truncatula])

HSP 1 Score: 195.3 bits (495), Expect = 8.7e-47
Identity = 99/171 (57.89%), Postives = 124/171 (72.51%), Query Frame = 1


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MR LS TFR  K PISNP+LSK SSSS K   L    +PK     WCVYLI+S+N PIKT
Sbjct: 1   MRTLSQTFRSIKRPISNPKLSKCSSSSPKKSEL----KPKSESSSWCVYLILSTNHPIKT 60

Query: 61  YVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFETKWKEVSRK 120
           YVGVT +  RRLK+HNG++KGGAKA+RAGRPW+CAC + GF ++S+AC FE+KWK +SR+
Sbjct: 61  YVGVTTNFPRRLKEHNGDLKGGAKASRAGRPWICACIVCGFTNRSEACVFESKWKALSRR 120

Query: 121 ISYKKK-DDMGKQVD-DQPIR-LLKHRQRALGKVKCLFDCSQFEFDWKLDP 169
           +  KK+ DD  KQ + + P R LL+HRQ AL +VK   DC+  E +W LDP
Sbjct: 121 VPRKKQNDDSSKQSESEDPSRPLLQHRQAALNRVKTSLDCTNLEINWHLDP 167

[Close]

BLAST of ClCG10G012070 vs. NCBI nr
Match: gi|658038682|ref|XP_008354909.1| (PREDICTED: structure-specific endonuclease subunit slx1-like isoform X1 [Malus domestica])

HSP 1 Score: 195.3 bits (495), Expect = 8.7e-47
Identity = 102/177 (57.63%), Postives = 123/177 (69.49%), Query Frame = 1


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEP--------KPNPKQWCVYLII 60
           MR LS TF   K    NP   K SS S+  L+L +KSE         K  PK W VYLI+
Sbjct: 24  MRRLSSTFPSVKFRNPNPNPPKLSSPSS--LSLSIKSEASSSSPSKSKSKPKSWSVYLIL 83

Query: 61  SSNSPIKTYVGVTLDLDRRLKQHNGEIKGGAKATRAGRPWLCACTIHGFKDQSQACEFET 120
           S+NSPIKTYVGVT D  RRLKQHNGE+KGGAKA+ AGRPW+CAC IHGFK QS+ACEFE+
Sbjct: 84  STNSPIKTYVGVTTDFSRRLKQHNGELKGGAKASSAGRPWICACLIHGFKGQSEACEFES 143

Query: 121 KWKEVSRKISYK-KKDDMGKQVDDQPIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP 169
           KWK +SR++  K KK D  ++ +D  + LL+HRQ AL +VK + DC+  E DWKLDP
Sbjct: 144 KWKTLSRRLPRKRKKHDEEERANDLSLPLLQHRQAALDRVKGILDCTHLEIDWKLDP 198

The following BLAST results are available for this feature:

BLAST of ClCG10G012070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SLX1_TALMQ	2.2e-13	40.38	Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain AT...	[more]
SLX1_SCHJY	6.3e-13	47.89	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s...	[more]
SLX1_TALSN	5.3e-12	38.24	Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain A...	[more]
SLX1_SCHPO	9.1e-12	42.86	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai...	[more]
SLX1_PENRW	1.7e-10	38.30	Structure-specific endonuclease subunit slx1 OS=Penicillium rubens (strain ATCC ...	[more]

BLAST of ClCG10G012070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCZ9_CUCSA	1.8e-83	88.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G683170 PE=4 SV=1	[more]
A0A061DUV7_THECC	4.7e-47	58.82	LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1...	[more]
A0A072TLC3_MEDTR	6.1e-47	57.89	Structure-specific endonuclease subunit SLX1-like protein OS=Medicago truncatula...	[more]
M5X494_PRUPE	8.8e-46	57.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015867mg PE=4 SV=1	[more]
A0A151TLN7_CAJCA	2.2e-44	55.03	Structure-specific endonuclease subunit slx1 OS=Cajanus cajan GN=KK1_021589 PE=4...	[more]

BLAST of ClCG10G012070 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43210.1	1.3e-40	51.74	Excinuclease ABC, C subunit, N-terminal	[more]
AT2G30350.2	5.9e-09	37.31	Excinuclease ABC, C subunit, N-terminal	[more]

BLAST of ClCG10G012070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449467603\|ref\|XP_004151512.1\|	2.6e-83	88.24	PREDICTED: structure-specific endonuclease subunit SLX1 [Cucumis sativus]	[more]
gi\|659123783\|ref\|XP_008461838.1\|	1.0e-79	85.88	PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]	[more]
gi\|590724297\|ref\|XP_007052427.1\|	6.7e-47	58.82	LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1...	[more]
gi\|922328491\|ref\|XP_013443638.1\|	8.7e-47	57.89	structure-specific endonuclease subunit SLX1-like protein [Medicago truncatula]	[more]
gi\|658038682\|ref\|XP_008354909.1\|	8.7e-47	57.63	PREDICTED: structure-specific endonuclease subunit slx1-like isoform X1 [Malus d...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000305	GIY-YIG_endonuc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0004519	endonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G012070.1	ClCG10G012070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG nuclease superfamily	PFAM	PF01541	GIY-YIG	coord: 45..120 score: 9.2
IPR000305	GIY-YIG nuclease superfamily	PROFILE	PS50164	GIY_YIG	coord: 44..125 score: 17
IPR000305	GIY-YIG nuclease superfamily	unknown	SSF82771	GIY-YIG endonuclease	coord: 45..121 score: 1.9
None	No IPR available	PANTHER	PTHR20208	FAMILY NOT NAMED	coord: 3..169 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G012070	Csa3G683170	Cucumber (Chinese Long) v2	cuwcgB190
ClCG10G012070	MELO3C024009	Melon (DHL92) v3.5.1	mewcgB315
ClCG10G012070	Cla97C10G194880	Watermelon (97103) v2	wcgwmbB038
ClCG10G012070	CSPI03G29380	Wild cucumber (PI 183967)	cpiwcgB191
ClCG10G012070	Cucsa.192730	Cucumber (Gy14) v1	cgywcgB348
ClCG10G012070	CmaCh14G009770	Cucurbita maxima (Rimu)	cmawcgB221
ClCG10G012070	CmoCh14G010010	Cucurbita moschata (Rifu)	cmowcgB206
ClCG10G012070	Lsi03G011810	Bottle gourd (USVL1VR-Ls)	lsiwcgB219
ClCG10G012070	Cp4.1LG03g04710	Cucurbita pepo (Zucchini)	cpewcgB544
ClCG10G012070	CsGy3G027230	Cucumber (Gy14) v2	cgybwcgB175
ClCG10G012070	MELO3C024009.2	Melon (DHL92) v3.6.1	medwcgB309
ClCG10G012070	Carg11199	Silver-seed gourd	carwcgB0792
ClCG10G012070	CsaV3_3G031830	Cucumber (Chinese Long) v3	cucwcgB195

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G012070	Watermelon (Charleston Gray)	wcgwcgB006
ClCG10G012070	Cucumber (Gy14) v1	cgywcgB210
ClCG10G012070	Cucurbita maxima (Rimu)	cmawcgB314
ClCG10G012070	Cucurbita maxima (Rimu)	cmawcgB387
ClCG10G012070	Cucurbita maxima (Rimu)	cmawcgB792
ClCG10G012070	Cucurbita moschata (Rifu)	cmowcgB308
ClCG10G012070	Cucurbita moschata (Rifu)	cmowcgB385
ClCG10G012070	Cucurbita moschata (Rifu)	cmowcgB790
ClCG10G012070	Wild cucumber (PI 183967)	cpiwcgB560
ClCG10G012070	Cucumber (Chinese Long) v2	cuwcgB531
ClCG10G012070	Melon (DHL92) v3.5.1	mewcgB187
ClCG10G012070	Watermelon (97103) v1	wcgwmB047
ClCG10G012070	Watermelon (97103) v1	wcgwmB051
ClCG10G012070	Cucurbita pepo (Zucchini)	cpewcgB134
ClCG10G012070	Cucurbita pepo (Zucchini)	cpewcgB290
ClCG10G012070	Cucurbita pepo (Zucchini)	cpewcgB486
ClCG10G012070	Bottle gourd (USVL1VR-Ls)	lsiwcgB162
ClCG10G012070	Cucumber (Gy14) v2	cgybwcgB492
ClCG10G012070	Melon (DHL92) v3.6.1	medwcgB182
ClCG10G012070	Silver-seed gourd	carwcgB0443
ClCG10G012070	Silver-seed gourd	carwcgB0738
ClCG10G012070	Cucumber (Chinese Long) v3	cucwcgB555
ClCG10G012070	Watermelon (97103) v2	wcgwmbB056
ClCG10G012070	Wax gourd	wcgwgoB078
ClCG10G012070	Wax gourd	wcgwgoB133