CSPI03G29380 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G29380
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Structure-specific endonuclease subunit SLX1-like protein
Location	Chr3 : 26955763 .. 26959797 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGCGTCACCCTTGACTTCGATCGACGGTAACTCCAATTTCTTCTCTTCTGTTCCTTGTTCCAACAACAGATTCCATGATTTGATGTTGAGAAGTTATCTGGGTCATCTTCGATTAGCCTTAAAAAGCTGATATCCTCTACTGAATTTCATTGGCAAAGAAATTGGCACTTTGCAACTTTTAGATGTCCTTTATGCATAAAAGCTATACAAATGTTTCTTAATATCTTAAAGTTGTGTTCTTGTACAGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATTCAATTAAATTACATACTTCTACAATCATTCTGCAATTTGGCCTTCAATTTCAAGGGGCATTGCTTGGTTTTTTGTGATTAGTCATTCTAGACATTAAGTTGCCTTGGACTTTTGAAAGCATGAGTTGTCTCCTAGTTTCTTTGTTGTGGCTGTGATCTTGCTAAGTAAGTTAGATGACAATGGTCTAATCTATTTCATTTTTTCTGTTATTGTGAAAACTATTTCCTTGCGAAACAACATTTATTCACTGCTCTTCCCTGACATTTGTTATAAGATGCATCCTAACTACCGTGAGTTAGCTTAGTGGTTAATAAGGACCATGTAAGTAATTAAAGGACTCAGAGAGATAGGTTTAAGTCATGATATTCACCTACCTAAAATTTAAAGTCTATAAGTTAACTTGACAACCAAATGTAGCAAGTTTAGGATCGTGAGAGTAGTTGAGGTGCATATAAGTGAACAAAAAAACTCACTTTTTTTAAAAAACCGAAAATGCATCTTTGATGAGAGCTTAACATGTCTATGTGAGAGTTGAGTGATAGGCCACAGCCTATAGTTTTGTTTGTCAACAACAAAGGGAAAGATTTTGGGAGCTTTCCCAATCTCTCCCAATACTCAAAAGAGAGTCCCAAGTACAAAATATCAGTGAAAAGATGATCAACACAAGTATTTAAAGAAAAAGCAAATGAAAAAAACTAAACCATCCTAAAAAATTTCTGGCCCGCACAACTAACAGAATTTCTTAAGGGCCCACAACACATATTTCCTCACTTAATTACCCTTTCTTATGCCTTCGACTATATACTTTCAAGCTTGGGGCCTTATCATTGAACTCCAGCATTACTCTTTAAATCCTTATATTTTCTTAAAAGCCTGAAAATACTTTACTTGGAGGAGAGAAACCTCAGAGAATTCCTCCTATTAAATCCATGTATAAATGCTGATGTTTGCCCTTTTTATAAGAATAATGAAATAGTAGAATCAAAGCCAAATAAGACATCTCTGGTGAGTGGATCAGTAAGTACTCTGCAGCAAAGTGTTCTAGAAGACCCACAATTCATGATGTATGTGCCAAGTGCGATAGTATTGGGTACTTGCAGTTGAAGCATTGATGGGGCCAGAGGAGGCAAAAGATAATGTGGTGGTGACTTGGGATTTCATTTCATACTCCAAAAGACACAAGGAATAGGAAGAAACTTTAGGTAACCTAAAATTTTAACTCATCAATTAAAGGTGGAAAATTTTCTTTATCTGTTTAAGTACCAATATAAGATGATTCAAGGTTGAAGACACTACTCTTGTGAGTTGTCAAGAAAATGCTGCAAAATCCTGTGCCAGAATACTGTAGACATACTTTCTGGTATCTGAAACTCTCTTATCCTTGCAACTGGAAGTACTAATGAGACTGAAAACAGGTAAATACCTAGAATGCAGCATTCAAATTGTTTTGTATTCTTAACTTGCCGCCTTAAACAGCATTGGCAACTGGAGTAGGAGTTAAACATGTTTAAATTAAGGGTGCATATCTGAGTGGAAACTAACATGCTATGGCAACGCCAAGTAAGAAGATATTTAGTTTGGCTGCCACATCATCATATAATTCCATGGAAATGGTCTCCCATATTGGGTAAAATGCAACAGTATAGCTGCAAAAGGAGAGACAATGGTAACTAATATAATACTGTGCTAGACCTTTTAAGGGGTGTGGCCCAAGGAGTTGGGAGAGGAGTTGCGAGGCTCCACTCCTTGTTTGGCCCAAGGAGTTTGTAGGCTTTGTAACTAAAACGCATCAATTTTGTGTCTTATTAAATCGTTACACTAATAGGTCCTAGGAGTTGACAACTCCAATCTTTACCCGAAACACCCCTTTCAAGTGAGTGTAAAGCATAAGAGAGTCGGGCAAAGGAGTGACTTAGCTTTAATTGAGAACTGTATTGTTTAGGATGGATGTAACTATTTAGTTAGACCAGCATGAGCGGTGTGACTTGCAGAGTATTTAGGAGTGAAATTTGGGCAAAGATAGGAAACCCATGGATTCTCCCTTTTTTGTATCATATAATATGAAACAGTTTCTATCATATAATTTTTTCTTCCCATAAAGTAGAGATCTAGAAACAAACTCATGAATTTCATTAATGTCGACAAGAAGAGGACAAATAAAGGCAATAGTAAACACAGATGATAAAATAATAGTTGAGTTCTTTTTCCTGTTTGGGAAAGGAACTGGTGCATTTTGCAGGTGAAATGCTCAAGGACAGTTTCAGGGCTCTATAATTCATGCCCTAAGTTTGTGTAATGAACCAACCATGATATTTATGATTTCCATGGCTGAGACAACTCCATGCATAAGAAATACTTGCTGATTGGATTGACTTATTTATGCAAAGAAACAAACTTATTCAATATTTTACACAGCTTGCATTCCTCTTGCTTATCCATTTTTGGTAGTCATCAGCTCCTCAAATTATATGCATGTTAAGACTCCTACCTACCAAATTGGGCCTTCCATCTTTAGTGCCTTTAACATTTTTTTTCCTTCAGAAATGAAACAAGTTGCAATTTTAATCGCCATGTATGGTATCCCATTTATCATTTGCCTGACATTCGAAGGGCAGTAGTTGGGGTTGTACTTACTTCTGCCAAGGGAAATGAAGCAACTGGGAGATTTCTAGGACTCTCATAGTACCCTACTTCGTTTGTTCATACTATAAATTGGTTTTCATAAATGTCAGTAGATCCCACCCATTTTTGAAAAGTGTGTTGTTGTGGTATACAATAAATGGAGGGAGTTTTTTGTACTCCCATAGTAAAGAAAATTTTCCCCAACTCATTGTCATCCTTTAAACAACTTTTGGTAGGAAGTAATTTGTAGTAATCACTACACAACAAAAATTGTCGAGTTTCACTGGTATCTATTGATTGTATGTTATGTGAGATCTTATAAATGTCTTGTTTCTGGTTGCATTTATGATTCATATTGTTGTGCTATGAACATTCTTCAAATTCATGTCCCAAAATCATCCCGCATAAATTTTATCAACACAATGATTTCATTTTTGAAACCTTACACTAAGTTTTTCTTTGGTTCATCAACTTGACACCAAATTTCTCGTGTTTTTCGACCAAGAAACGTTCTGTGAAATCATTCCCACACCATTTCTGATGCTGTTTTTGTATCCTTCGTATGCAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACTTGGGTTGTGGTTTTTCTTTTTCTTTTACAAATATTTATATATTTATTTTCAATTCTATGAATTGAAATAATGATTGTTTATAAGATAAATATCTCAT

mRNA sequence

ATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGCGTCACCCTTGACTTCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGA

Coding sequence (CDS)

ATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGCGTCACCCTTGACTTCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGA

Homology

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BLAST of CSPI03G29380 vs. Swiss-Prot
Match: SLX1_SCHJY (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=slx1 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.9e-13
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 46  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQ 105
           +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +
Sbjct: 3   YCCYLLVSEKAASRSVYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTK 62

Query: 106 SQACEFESKWK 116
             A +FE  W+
Sbjct: 63  IAALQFEWVWQ 73

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BLAST of CSPI03G29380 vs. Swiss-Prot
Match: SLX1_SCHPO (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slx1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.0e-12
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1


Query: 46  WCVYLIISSNSPIK--TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKD 105
           +C YL+ S+ +      Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPN 66

Query: 106 QSQACEFESKWKKV 118
           +  A +FE  W+ +
Sbjct: 67  KVSALKFEWNWQNL 80

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BLAST of CSPI03G29380 vs. Swiss-Prot
Match: SLX1_TALMQ (Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=slx1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 39  PKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICAC 98
           PKP    +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW    
Sbjct: 12  PKPIPAFYCCYLLRSVKKPSSLYIGSTPDPARRLEQHNGFTKGGAKRTERDTLRPWEMIT 71

Query: 99  TIHGFKDQSQACEFESKWKKV 118
            I GF  ++ A +FE  W+ V
Sbjct: 72  IIEGFTSRTGALQFEWSWQHV 92

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BLAST of CSPI03G29380 vs. Swiss-Prot
Match: SLX1_TALSN (Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=slx1 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.1e-10
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 1


Query: 40  KPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACT 99
           KP    +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     
Sbjct: 13  KPIPAFYCCYLLRSAKRPSALYIGSTPDPARRLEQHNGFAKGGAKRTERNTLRPWEMVAI 72

Query: 100 IHGFKDQSQACEFESKWKKV 118
           + GF  ++ A +FE  W+ V
Sbjct: 73  VEGFPSRTGALQFEWSWQHV 92

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BLAST of CSPI03G29380 vs. Swiss-Prot
Match: SLX1_LEIIN (Structure-specific endonuclease subunit SLX1 homolog OS=Leishmania infantum GN=LinJ25.1380 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 47  CVYLIISSNSPIKT--YVGVTLDFDRRLKQHNGEIKGGAKAT-RAGRPWICACTIHGFKD 106
           CVYL+ S +   +   Y+G T++  RRL+QHNGE+  GA+ T R GRPW   C + GF D
Sbjct: 7   CVYLLTSLDPQCEGDFYIGYTVNPLRRLRQHNGELVNGARRTSRRGRPWTIVCCVSGFPD 66

Query: 107 QSQACEFESKWK 116
              A +FE  W+
Sbjct: 67  DRAALKFEWCWQ 78

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BLAST of CSPI03G29380 vs. TrEMBL
Match: A0A0A0LCZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 8.8e-94
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISYEKKEEDVGK LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of CSPI03G29380 vs. TrEMBL
Match: A0A061DUV7_THECC (LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1 OS=Theobroma cacao GN=TCM_005809 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.9e-50
Identity = 105/170 (61.76%), Postives = 126/170 (74.12%), Query Frame = 1


Query: 1    MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
            MRLL+ TFR VK P  NP   K SSS S   + I KS    K K WCVYLI+S+N+PIKT
Sbjct: 1124 MRLLTATFRSVKHP--NPDFIKPSSSLSSGSSPIAKS----KTKSWCVYLILSTNAPIKT 1183

Query: 61   YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
            YVGVT DF RRLKQHNGE+KGGAKA+RAGRPWICAC I GF DQS+ACEFESKWK+ SRK
Sbjct: 1184 YVGVTTDFSRRLKQHNGELKGGAKASRAGRPWICACIIRGFNDQSEACEFESKWKRFSRK 1243

Query: 121  ISYEKKEEDVGKQL--DDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLD 169
            +  ++K  D+ K++  DD +L LL+HR+ AL +VK   DCS  E DW+L+
Sbjct: 1244 LPCKRKNSDLTKEVDEDDGSLTLLQHRQTALNRVKGSLDCSHLEIDWQLN 1287

[Close]

BLAST of CSPI03G29380 vs. TrEMBL
Match: A0A072TLC3_MEDTR (Structure-specific endonuclease subunit SLX1-like protein OS=Medicago truncatula GN=MTR_0003s0480 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.5e-48
Identity = 98/171 (57.31%), Postives = 125/171 (73.10%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MR LS TFR +K PISNP LSK SSSS K   L    +PK +   WCVYLI+S+N PIKT
Sbjct: 1   MRTLSQTFRSIKRPISNPKLSKCSSSSPKKSEL----KPKSESSSWCVYLILSTNHPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVT +F RRLK+HNG++KGGAKA+RAGRPWICAC + GF ++S+AC FESKWK +SR+
Sbjct: 61  YVGVTTNFPRRLKEHNGDLKGGAKASRAGRPWICACIVCGFTNRSEACVFESKWKALSRR 120

Query: 121 ISYEKKEEDVGKQ--LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
           +  +K+ +D  KQ   +D +  LL+HR+ AL +VK   DC+  E +W LDP
Sbjct: 121 VPRKKQNDDSSKQSESEDPSRPLLQHRQAALNRVKTSLDCTNLEINWHLDP 167

[Close]

BLAST of CSPI03G29380 vs. TrEMBL
Match: M5X494_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015867mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.8e-47
Identity = 102/175 (58.29%), Postives = 125/175 (71.43%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSE------PKPKLKQWCVYLIISS 60
           M+ LS TF  VK P  NP   KS   SS   +L +KSE      P    + W VYLI+S+
Sbjct: 1   MQRLSRTFPSVKHP--NP---KSPKISSFPRSLPIKSEEATLNSPSKSRRSWSVYLILST 60

Query: 61  NSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKW 120
           N+PIKTYVGVT DF RRLKQHNGE+KGGAKA+ AGRPWICAC IHGFKDQS+ACEFESKW
Sbjct: 61  NTPIKTYVGVTTDFSRRLKQHNGELKGGAKASCAGRPWICACLIHGFKDQSEACEFESKW 120

Query: 121 KKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
           K +SR +S ++K ++  +Q+ D +L LL+HR+ AL +VK L DC+  E DWKL P
Sbjct: 121 KSLSRSLSRKRKNDNKVEQVKDLSLPLLQHRQAALNRVKGLLDCTHLEIDWKLGP 170

[Close]

BLAST of CSPI03G29380 vs. TrEMBL
Match: A0A151TLN7_CAJCA (Structure-specific endonuclease subunit slx1 OS=Cajanus cajan GN=KK1_021589 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-46
Identity = 96/169 (56.80%), Postives = 117/169 (69.23%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MR LS  FR VK P  NP LSKSSS +  +         KPK + WCVYLI+S+N PIKT
Sbjct: 2   MRTLSTQFRSVKRPNPNPKLSKSSSPAKSE-------NAKPKSEPWCVYLILSTNHPIKT 61

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVT +F RRLKQHNGE+KGGAKA+RAGRPWICAC + GF D+S AC FESKWK  SR+
Sbjct: 62  YVGVTNNFPRRLKQHNGELKGGAKASRAGRPWICACIVCGFTDRSDACVFESKWKAFSRR 121

Query: 121 ISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
              + K +D+  Q +D +L LL+HR+ AL +VK   DC+  +  W LDP
Sbjct: 122 APRKNKNDDLSMQSEDPSLPLLRHRQAALSRVKGSLDCTNLQIIWHLDP 163

[Close]

BLAST of CSPI03G29380 vs. TAIR10
Match: AT5G43210.1 (AT5G43210.1 Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 167.2 bits (422), Expect = 9.1e-42
Identity = 93/173 (53.76%), Postives = 111/173 (64.16%), Query Frame = 1


Query: 2   RLLSHTFRCVKPPISNP--PLSKSSSSSSKDPTLIVKSEPK-----PKLKQWCVYLIISS 61
           RLLS TF  VK   SNP  P  K+  +S     +   S P+     PK K W VYLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKW 121
             PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+CAC I GF   SQA  FESKW
Sbjct: 63  TEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCLSQASSFESKW 122

Query: 122 KKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKL 168
           K  +RK+   KK+ED+      Q+  LL+HR RAL KV+   DCS  E DWK+
Sbjct: 123 KIFTRKLPRRKKDEDM-----SQSDALLQHRRRALNKVEESLDCSYLETDWKI 170

[Close]

BLAST of CSPI03G29380 vs. TAIR10
Match: AT2G30350.2 (AT2G30350.2 Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-08
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1


Query: 59  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWK 116
           +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+
Sbjct: 43  QTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQFEWAWQ 99

[Close]

BLAST of CSPI03G29380 vs. NCBI nr
Match: gi|449467603|ref|XP_004151512.1| (PREDICTED: structure-specific endonuclease subunit SLX1 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 1.3e-93
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISYEKKEEDVGK LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of CSPI03G29380 vs. NCBI nr
Match: gi|659123783|ref|XP_008461838.1| (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-83
Identity = 155/170 (91.18%), Postives = 161/170 (94.71%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHGFKDQSQACEFESKWKKVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISYEKKE+DVGKQLD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Sbjct: 121 ISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

[Close]

BLAST of CSPI03G29380 vs. NCBI nr
Match: gi|590724297|ref|XP_007052427.1| (LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 205.3 bits (521), Expect = 8.5e-50
Identity = 105/170 (61.76%), Postives = 126/170 (74.12%), Query Frame = 1


Query: 1    MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
            MRLL+ TFR VK P  NP   K SSS S   + I KS    K K WCVYLI+S+N+PIKT
Sbjct: 1124 MRLLTATFRSVKHP--NPDFIKPSSSLSSGSSPIAKS----KTKSWCVYLILSTNAPIKT 1183

Query: 61   YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
            YVGVT DF RRLKQHNGE+KGGAKA+RAGRPWICAC I GF DQS+ACEFESKWK+ SRK
Sbjct: 1184 YVGVTTDFSRRLKQHNGELKGGAKASRAGRPWICACIIRGFNDQSEACEFESKWKRFSRK 1243

Query: 121  ISYEKKEEDVGKQL--DDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLD 169
            +  ++K  D+ K++  DD +L LL+HR+ AL +VK   DCS  E DW+L+
Sbjct: 1244 LPCKRKNSDLTKEVDEDDGSLTLLQHRQTALNRVKGSLDCSHLEIDWQLN 1287

[Close]

BLAST of CSPI03G29380 vs. NCBI nr
Match: gi|502179662|ref|XP_004516472.1| (PREDICTED: structure-specific endonuclease subunit slx1 [Cicer arietinum])

HSP 1 Score: 202.2 bits (513), Expect = 7.2e-49
Identity = 99/169 (58.58%), Postives = 122/169 (72.19%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MR LS TFR +K PI NP LSKSS S S      VK   KPK   WCVYLI+S+N PIKT
Sbjct: 3   MRTLSETFRSIKRPIPNPKLSKSSPSPSISE---VKFTAKPKSDSWCVYLILSTNHPIKT 62

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVT +F RRLKQHNGE+KGGAKA+RAGRPWICAC I GF D+S+AC FESKWK  +R+
Sbjct: 63  YVGVTTNFPRRLKQHNGELKGGAKASRAGRPWICACLICGFADRSEACVFESKWKAFTRR 122

Query: 121 ISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
              + + +++ K+ +D +L LL+HR+ AL +VK   DC+  E +W LDP
Sbjct: 123 FPRKNQNDNLSKECEDPSLPLLRHRQAALNRVKNSLDCTNLEINWHLDP 168

[Close]

BLAST of CSPI03G29380 vs. NCBI nr
Match: gi|922328491|ref|XP_013443638.1| (structure-specific endonuclease subunit SLX1-like protein [Medicago truncatula])

HSP 1 Score: 199.9 bits (507), Expect = 3.6e-48
Identity = 98/171 (57.31%), Postives = 125/171 (73.10%), Query Frame = 1


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MR LS TFR +K PISNP LSK SSSS K   L    +PK +   WCVYLI+S+N PIKT
Sbjct: 1   MRTLSQTFRSIKRPISNPKLSKCSSSSPKKSEL----KPKSESSSWCVYLILSTNHPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVT +F RRLK+HNG++KGGAKA+RAGRPWICAC + GF ++S+AC FESKWK +SR+
Sbjct: 61  YVGVTTNFPRRLKEHNGDLKGGAKASRAGRPWICACIVCGFTNRSEACVFESKWKALSRR 120

Query: 121 ISYEKKEEDVGKQ--LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
           +  +K+ +D  KQ   +D +  LL+HR+ AL +VK   DC+  E +W LDP
Sbjct: 121 VPRKKQNDDSSKQSESEDPSRPLLQHRQAALNRVKTSLDCTNLEINWHLDP 167

The following BLAST results are available for this feature:

BLAST of CSPI03G29380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SLX1_SCHJY	4.9e-13	47.89	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s...	[more]
SLX1_SCHPO	7.0e-12	43.24	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai...	[more]
SLX1_TALMQ	1.7e-10	44.44	Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain AT...	[more]
SLX1_TALSN	5.1e-10	42.50	Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain A...	[more]
SLX1_LEIIN	1.5e-09	44.44	Structure-specific endonuclease subunit SLX1 homolog OS=Leishmania infantum GN=L...	[more]

BLAST of CSPI03G29380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCZ9_CUCSA	8.8e-94	99.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G683170 PE=4 SV=1	[more]
A0A061DUV7_THECC	5.9e-50	61.76	LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1...	[more]
A0A072TLC3_MEDTR	2.5e-48	57.31	Structure-specific endonuclease subunit SLX1-like protein OS=Medicago truncatula...	[more]
M5X494_PRUPE	2.8e-47	58.29	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015867mg PE=4 SV=1	[more]
A0A151TLN7_CAJCA	1.8e-46	56.80	Structure-specific endonuclease subunit slx1 OS=Cajanus cajan GN=KK1_021589 PE=4...	[more]

BLAST of CSPI03G29380 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43210.1	9.1e-42	53.76	Excinuclease ABC, C subunit, N-terminal	[more]
AT2G30350.2	1.0e-08	43.86	Excinuclease ABC, C subunit, N-terminal	[more]

BLAST of CSPI03G29380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449467603\|ref\|XP_004151512.1\|	1.3e-93	99.41	PREDICTED: structure-specific endonuclease subunit SLX1 [Cucumis sativus]	[more]
gi\|659123783\|ref\|XP_008461838.1\|	1.2e-83	91.18	PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]	[more]
gi\|590724297\|ref\|XP_007052427.1\|	8.5e-50	61.76	LRR and NB-ARC domains-containing disease resistance protein, putative isoform 1...	[more]
gi\|502179662\|ref\|XP_004516472.1\|	7.2e-49	58.58	PREDICTED: structure-specific endonuclease subunit slx1 [Cicer arietinum]	[more]
gi\|922328491\|ref\|XP_013443638.1\|	3.6e-48	57.31	structure-specific endonuclease subunit SLX1-like protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000305	GIY-YIG_endonuc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004519	endonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G29380.1	CSPI03G29380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG nuclease superfamily	PFAM	PF01541	GIY-YIG	coord: 45..120 score: 7.8
IPR000305	GIY-YIG nuclease superfamily	PROFILE	PS50164	GIY_YIG	coord: 44..125 score: 18
IPR000305	GIY-YIG nuclease superfamily	unknown	SSF82771	GIY-YIG endonuclease	coord: 45..121 score: 1.8
None	No IPR available	PANTHER	PTHR20208	FAMILY NOT NAMED	coord: 3..170 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G29380	Csa3G683170	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G29380	MELO3C024009	Melon (DHL92) v3.5.1	cpimeB199
CSPI03G29380	ClCG10G012070	Watermelon (Charleston Gray)	cpiwcgB191
CSPI03G29380	Lsi03G011810	Bottle gourd (USVL1VR-Ls)	cpilsiB181
CSPI03G29380	MELO3C024009.2	Melon (DHL92) v3.6.1	cpimedB193
CSPI03G29380	Cla97C10G194880	Watermelon (97103) v2	cpiwmbB185
CSPI03G29380	Cucsa.192730	Cucumber (Gy14) v1	cgycpiB303
CSPI03G29380	CmaCh14G009770	Cucurbita maxima (Rimu)	cmacpiB243
CSPI03G29380	CmoCh14G010010	Cucurbita moschata (Rifu)	cmocpiB231
CSPI03G29380	Cp4.1LG03g04710	Cucurbita pepo (Zucchini)	cpecpiB601
CSPI03G29380	CsGy3G027230	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G29380	Carg11199	Silver-seed gourd	carcpiB0850

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G29380	Cucurbita pepo (Zucchini)	cpecpiB313
CSPI03G29380	Cucurbita pepo (Zucchini)	cpecpiB546
CSPI03G29380	Bottle gourd (USVL1VR-Ls)	cpilsiB171
CSPI03G29380	Melon (DHL92) v3.6.1	cpimedB174
CSPI03G29380	Cucumber (Gy14) v2	cgybcpiB313
CSPI03G29380	Silver-seed gourd	carcpiB0488
CSPI03G29380	Silver-seed gourd	carcpiB0797
CSPI03G29380	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G29380	Cucumber (Chinese Long) v3	cpicucB191
CSPI03G29380	Wax gourd	cpiwgoB221
CSPI03G29380	Wild cucumber (PI 183967)	cpicpiB142
CSPI03G29380	Cucumber (Gy14) v1	cgycpiB179
CSPI03G29380	Cucurbita maxima (Rimu)	cmacpiB365
CSPI03G29380	Cucurbita maxima (Rimu)	cmacpiB456
CSPI03G29380	Cucurbita maxima (Rimu)	cmacpiB904
CSPI03G29380	Cucurbita moschata (Rifu)	cmocpiB356
CSPI03G29380	Cucurbita moschata (Rifu)	cmocpiB444
CSPI03G29380	Cucurbita moschata (Rifu)	cmocpiB884
CSPI03G29380	Cucumber (Chinese Long) v2	cpicuB164
CSPI03G29380	Melon (DHL92) v3.5.1	cpimeB181
CSPI03G29380	Watermelon (97103) v1	cpiwmB194
CSPI03G29380	Cucurbita pepo (Zucchini)	cpecpiB138