Cucsa.185110 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.185110
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING/U-box superfamily protein
Location	scaffold01274 : 691706 .. 692869 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCTCCACTCCAATGCTAACCACAAAGTCTTTGATCAATCACCTCATTCAATTCAACTTCACAAGCTTCCCTTAGAACCAACTTCTTCAGTTCAGATATGGAATTGGAATGAATGGCAGACATGGCATGGCCCTTCATTCTACTTCCGAGTGTCTCTCTTCTTCACCTCCACTCGATATTGGCGGACTTCTTTCAGCTCAGTTAATGACGTCCTATCCCTGAAGATCTACAGAAAACCCAAAACTGGTTAGTAGGATCATTATCTCTTTCATGAAAAACCAACTTTTCTTTTCTTGATTTTGCACCTTTGTTTTGAAAAGACATTGTTTGAGGCATTCTTCTTTGTGGGTATCTCTGGTTTATTCTCTGTTTCATTTCACACCATAATCCCTTTTCGGGGTTCGTTGTGTCAGATTGGTATCTAGACGAAATTTGAAGAGGAAATGGAGCGGGCTAATCGAAGGCGGAGATGGACAAATTTAAGGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAATGACGAAGGAGGCCCCACGGGGGgTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAAAATTTTtCAAAAACTCATTTTTGTTTTCCTAAAATTATTATCTCAATGTGATTTGTTTTTGTTTTATTTTGTGGTTTTGGTATATTTTTATTTtCCTCTGATAGGTATGATGGAAGGATAAGGCTGCACGTGTTCATCAAAATTACATCATCCAAATATAACATTCTAAGcTTtTTTTttttTTTttAgTTTGGAAATGTAAGTATCCTA

mRNA sequence

CCCCTCCACTCCAATGCTAACCACAAAGTCTTTGATCAATCACCTCATTCAATTCAACTTCACAAGCTTCCCTTAGAACCAACTTCTTCAGTTCAGATATGGAATTGGAATGAATGGCAGACATGGCATGGCCCTTCATTCTACTTCCGAGTGTCTCTCTTCTTCACCTCCACTCGATATTGGCGGACTTCTTTCAGCTCAGTTAATGACGTCCTATCCCTGAAGATCTACAGAAAACCCAAAACTGATTGGTATCTAGACGAAATTTGAAGAGGAAATGGAGCGGGCTAATCGAAGGCGGAGATGGACAAATTTAAGGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAATGACGAAGGAGGCCCCACGGGGGGTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAAAATTTTTCAAAAACTCATTTTTGTTTTCCTAAAATTATTATCTCAATGTGATTTGTTTTTGTTTTATTTTGTGGTTTTGGTATATTTTTATTTTCCTCTGATAGGTATGATGGAAGGATAAGGCTGCACGTGTTCATCAAAATTACATCATCCAAATATAACATTCTAAGCTTTTTTTTTTTTTTTTAGTTTGGAAATGTAAGTATCCTA

Coding sequence (CDS)

ATGGAGCGGGCTAATCGAAGGCGGAGATGGACAAATTTAAGGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAATGACGAAGGAGGCCCCACGGGGGgTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAA

Protein sequence

MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRSSAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF*

Homology

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BLAST of Cucsa.185110 vs. Swiss-Prot
Match: IAP4_OSHVF (Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN=ORF106 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-06
Identity = 28/80 (35.00%), Postives = 41/80 (51.25%), Query Frame = 1


Query: 99  EEMDGG-----DWKTKRKESENNGDWMCCVCMERSKGAAFIPCGHTF-CRVCSRELWLN- 158
           +E DGG     ++    KE EN     C  C ER    AFIPCGH F C +C+ E++ + 
Sbjct: 378 KEEDGGGGGVIEFPKNNKEVENPKRGSCKACYERKADIAFIPCGHVFSCNICTMEMFASY 437

Query: 159 --RGTCPICSRSIIEILDIF 170
             +  CP+C   + ++  IF
Sbjct: 438 KKKKRCPMCRVHVEKVQKIF 457

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BLAST of Cucsa.185110 vs. TrEMBL
Match: A0A0A0KEL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421620 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 7.1e-96
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120
           SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of Cucsa.185110 vs. TrEMBL
Match: W9SUF0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004822 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 105/173 (60.69%), Postives = 124/173 (71.68%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           M+ A+R  RWT+++QRLGLKGMGCC  +WSP+ STLT+IE      H  +      G   
Sbjct: 28  MDGADRIGRWTSIKQRLGLKGMGCCGATWSPSPSTLTIIETLEEEHHHRTEPVSV-GPVQ 87

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGS-DVKSLMRLFEEMDGGDWKTKRKESENNG-- 120
           +A  GMNLAMALAAERN R    GPT  S  VKSLM L EEMD  DW  +R+     G  
Sbjct: 88  AAVPGMNLAMALAAERNSRAGREGPTTASGQVKSLMTLIEEMDDVDWSNRRRRDNKEGGD 147

Query: 121 -DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
            DW+CCVCMER+KGAAFIPCGHTFCRVCSRE+W+NRGTCP+CSR I+EILDI+
Sbjct: 148 SDWLCCVCMERNKGAAFIPCGHTFCRVCSREMWVNRGTCPLCSRPIVEILDIY 199

[Close]

BLAST of Cucsa.185110 vs. TrEMBL
Match: A0A067EKA2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036555mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-47
Identity = 102/192 (53.12%), Postives = 120/192 (62.50%), Query Frame = 1


Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI--------------EGFSLSLHGSSR 65
           RRR W NL+QRL LKGMGCC   WS  + TLT++               G  + +H  + 
Sbjct: 7   RRRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEEEPEEQERGTHVRMHMRNA 66

Query: 66  SQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGDW 125
           +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGDW
Sbjct: 67  AASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGDW 126

Query: 126 KTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPI 170
           + K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCPI
Sbjct: 127 QMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPI 186

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BLAST of Cucsa.185110 vs. TrEMBL
Match: V4UF21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016774mg PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-46
Identity = 101/193 (52.33%), Postives = 119/193 (61.66%), Query Frame = 1


Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI---------------EGFSLSLHGSS 65
           R R W NL+QRL LKGMGCC   WS  + TLT++                G  + +H  +
Sbjct: 7   RTRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEQEEPEEQERGTHVRMHMRN 66

Query: 66  RSQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGD 125
            +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGD
Sbjct: 67  AAASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGD 126

Query: 126 WKTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
           W+ K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCP
Sbjct: 127 WQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCP 186

[Close]

BLAST of Cucsa.185110 vs. TrEMBL
Match: A0A061DKM7_THECC (Ubiquitin-protein ligase, putative OS=Theobroma cacao GN=TCM_002176 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.8e-45
Identity = 105/216 (48.61%), Postives = 131/216 (60.65%), Query Frame = 1


Query: 5   NRRRRWTNLRQRLGLKGMGCCRGSWSPTS--STLTMIEGFS-----------------LS 64
           +RR  W NL+QRLGLK MGCC  +WSP +  ST++++E                    +S
Sbjct: 7   DRRASWKNLKQRLGLKAMGCCGATWSPRARISTISILEEDEDEEEEAAAVAAQSQQVIIS 66

Query: 65  LHGS---SRSQGEDGGRSS---------------AASGMNLAMALAAERNLRNDEGGPTG 124
             G+   +R Q +    +S               A SGMNLAMALAAERNLR    GP+ 
Sbjct: 67  RSGNVVNNRIQNQTENSASTPLLVGQQQQQQVPTAGSGMNLAMALAAERNLRTANMGPS- 126

Query: 125 GSDVKSLMRLFEEMDGGDWKTKRKESENN--------------GDWMCCVCMERSKGAAF 170
            ++VK+LMRL EE DG DWK KRK++  N               DWMCCVCMER KGAAF
Sbjct: 127 PTEVKTLMRLIEETDGVDWKKKRKDNVVNVEGVGVGGLGGGGSCDWMCCVCMERKKGAAF 186

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BLAST of Cucsa.185110 vs. TAIR10
Match: AT4G03965.1 (AT4G03965.1 RING/U-box superfamily protein)

HSP 1 Score: 141.4 bits (355), Expect = 5.3e-34
Identity = 87/184 (47.28%), Postives = 108/184 (58.70%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRS-QGEDGGR 60
           ++R+ RR+R   L++RLG K +GCC  +W      LT   G        +R   G D   
Sbjct: 32  LDRSRRRKR--TLKERLGFKRIGCCGPTWG---LRLTSNTGEDDDEPFENRLVSGSDHVT 91

Query: 61  SSAASGMNLAMALAAERNLRNDEGGPTGG-SDVK-SLMRLFEEMDGGDWKTKRKESEN-- 120
                GMNLA ALAAERN R +E   +G  + +K SLMRL EE        +  E+E   
Sbjct: 92  GPLNQGMNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEET-AERVVVEENETERVT 151

Query: 121 ----------NGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEI 170
                     N D +CCVCM R KGAAFIPCGHTFCRVCSRE+WLNRG+CP+C+R IIEI
Sbjct: 152 ASASSTVRGVNNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEI 209

[Close]

BLAST of Cucsa.185110 vs. TAIR10
Match: AT4G22250.1 (AT4G22250.1 RING/U-box superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 7.2e-31
Identity = 79/177 (44.63%), Postives = 96/177 (54.24%), Query Frame = 1


Query: 8   RRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDG----GRSSAA 67
           RR   L++RL  K +GCC  +W+   +  T +   +         Q E G        + 
Sbjct: 38  RRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHSPTSRDDEIEELQIETGLVLESDHGSG 97

Query: 68  SGMNLAMALAAERNLRNDEGGPTGGSDVK--SLMRLFEEMDGGDWKTKRKESE------- 127
           +GMNLA AL AER  R +          +  SLMRL EE          KE+E       
Sbjct: 98  TGMNLATALEAERYNRGESTEAEADMTPRRVSLMRLLEETAEKIVDDDGKETEILTASIG 157

Query: 128 --NNGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
                D +CCVCM R KGAAFIPCGHTFCRVCSRELWLNRG+CP+C+R IIEILDIF
Sbjct: 158 TLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 214

[Close]

BLAST of Cucsa.185110 vs. TAIR10
Match: AT1G62370.1 (AT1G62370.1 RING/U-box superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-27
Identity = 72/176 (40.91%), Postives = 94/176 (53.41%), Query Frame = 1


Query: 9   RWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIE-------------GFSLSLHGSSRSQGE 68
           +WT L+QRL    +GCC     P +  L   E               +  +  S    G 
Sbjct: 40  KWTTLKQRLRFDWVGCCG---KPLTLRLRQAETPIVVDDDDDEEESQNQVVDFSDPGTGT 99

Query: 69  DGGRSSAASGMNLAMALAAER--NLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKES 128
           +    +  S  NLA ALA ER  ++  +E   T       LMRL  E DG D  T    +
Sbjct: 100 ELDCLTRGSTRNLAEALAEERLAHVTEEETAVTK----VPLMRLLAESDGCDSTT----T 159

Query: 129 ENNGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
               D +CCVCM R KGAAFIPCGHT+CRVCSRE+W+NRGTCP+C+RSI ++LD++
Sbjct: 160 WLGNDPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204

[Close]

BLAST of Cucsa.185110 vs. TAIR10
Match: AT3G25030.1 (AT3G25030.1 RING/U-box superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 7.7e-25
Identity = 76/193 (39.38%), Postives = 100/193 (51.81%), Query Frame = 1


Query: 1   MERANRRRR----WTNLRQRLGLKGMGCCRGSWSPTSSTLTMIE---------GFSLSLH 60
           M+R +R  R    W +LR++L LK  G    S +   S  T I          GF LS  
Sbjct: 63  MQREHRHSRDKTAWKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNS 122

Query: 61  GSSRSQGEDGGRSSAASGMNLAMALAAERNLRNDEGGPTGGSDVK----SLMRLFEEMDG 120
           G+   +      SS    + L   LA ER L   E       +V+    SLM L EE +G
Sbjct: 123 GNVTEEA-----SSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEG 182

Query: 121 G-DWKTKRKESENN------GDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
              + +   E+E         +  CCVCM RSKGAAFIPCGHTFCR+CSRELW+ RG CP
Sbjct: 183 QMSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCP 242

[Close]

BLAST of Cucsa.185110 vs. TAIR10
Match: AT4G13100.2 (AT4G13100.2 RING/U-box superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 6.1e-22
Identity = 71/202 (35.15%), Postives = 96/202 (47.52%), Query Frame = 1


Query: 2   ERANRRRRWTNLRQRLGLK--GMGCCRGSWSPTSSTLTMIE----------GFSLSLHGS 61
           ER   +  W +LR +L LK    G    +  PT     +            GF L+   +
Sbjct: 75  ERRRDKTAWKSLRDKLRLKRTATGWISSNPIPTLDNHILTPDNDSHRFNRLGFLLTNSET 134

Query: 62  SRSQGEDGGRSSAASG----MNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGD 121
           +RS  +    +  A+     + L   LAAER                SLM L E+ DG  
Sbjct: 135 NRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPR-----------MSLMELLEDNDGHM 194

Query: 122 WK-TKRKESENNG-----------------DWMCCVCMERSKGAAFIPCGHTFCRVCSRE 170
           ++ + R E E  G                 +  CCVCM RSKGAAFIPCGHTFCR+CSRE
Sbjct: 195 YELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRE 254

[Close]

BLAST of Cucsa.185110 vs. NCBI nr
Match: gi|700192764|gb|KGN47968.1| (hypothetical protein Csa_6G421620 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 1.0e-95
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120
           SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of Cucsa.185110 vs. NCBI nr
Match: gi|659097176|ref|XP_008449482.1| (PREDICTED: uncharacterized protein LOC103491356 [Cucumis melo])

HSP 1 Score: 343.2 bits (879), Expect = 2.6e-91
Identity = 162/169 (95.86%), Postives = 164/169 (97.04%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           MERANR RRW NL+QRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQ EDGGRS
Sbjct: 1   MERANRGRRWANLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120
           SAASGMNLAMALAAERNLR+DEGGPTG SDVKSLMRLFEEMDGGDWKTKRKE ENNGDWM
Sbjct: 61  SAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of Cucsa.185110 vs. NCBI nr
Match: gi|703153220|ref|XP_010110624.1| (hypothetical protein L484_004822 [Morus notabilis])

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-52
Identity = 105/173 (60.69%), Postives = 124/173 (71.68%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           M+ A+R  RWT+++QRLGLKGMGCC  +WSP+ STLT+IE      H  +      G   
Sbjct: 28  MDGADRIGRWTSIKQRLGLKGMGCCGATWSPSPSTLTIIETLEEEHHHRTEPVSV-GPVQ 87

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGS-DVKSLMRLFEEMDGGDWKTKRKESENNG-- 120
           +A  GMNLAMALAAERN R    GPT  S  VKSLM L EEMD  DW  +R+     G  
Sbjct: 88  AAVPGMNLAMALAAERNSRAGREGPTTASGQVKSLMTLIEEMDDVDWSNRRRRDNKEGGD 147

Query: 121 -DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
            DW+CCVCMER+KGAAFIPCGHTFCRVCSRE+W+NRGTCP+CSR I+EILDI+
Sbjct: 148 SDWLCCVCMERNKGAAFIPCGHTFCRVCSREMWVNRGTCPLCSRPIVEILDIY 199

[Close]

BLAST of Cucsa.185110 vs. NCBI nr
Match: gi|641835332|gb|KDO54310.1| (hypothetical protein CISIN_1g036555mg [Citrus sinensis])

HSP 1 Score: 196.4 bits (498), Expect = 3.9e-47
Identity = 102/192 (53.12%), Postives = 120/192 (62.50%), Query Frame = 1


Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI--------------EGFSLSLHGSSR 65
           RRR W NL+QRL LKGMGCC   WS  + TLT++               G  + +H  + 
Sbjct: 7   RRRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEEEPEEQERGTHVRMHMRNA 66

Query: 66  SQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGDW 125
           +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGDW
Sbjct: 67  AASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGDW 126

Query: 126 KTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPI 170
           + K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCPI
Sbjct: 127 QMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPI 186

[Close]

BLAST of Cucsa.185110 vs. NCBI nr
Match: gi|567910675|ref|XP_006447651.1| (hypothetical protein CICLE_v10016774mg [Citrus clementina])

HSP 1 Score: 193.7 bits (491), Expect = 2.6e-46
Identity = 101/193 (52.33%), Postives = 119/193 (61.66%), Query Frame = 1


Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI---------------EGFSLSLHGSS 65
           R R W NL+QRL LKGMGCC   WS  + TLT++                G  + +H  +
Sbjct: 7   RTRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEQEEPEEQERGTHVRMHMRN 66

Query: 66  RSQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGD 125
            +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGD
Sbjct: 67  AAASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGD 126

Query: 126 WKTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
           W+ K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCP
Sbjct: 127 WQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCP 186

The following BLAST results are available for this feature:

BLAST of Cucsa.185110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAP4_OSHVF	9.8e-06	35.00	Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN...	[more]

BLAST of Cucsa.185110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEL6_CUCSA	7.1e-96	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421620 PE=4 SV=1	[more]
W9SUF0_9ROSA	1.3e-52	60.69	Uncharacterized protein OS=Morus notabilis GN=L484_004822 PE=4 SV=1	[more]
A0A067EKA2_CITSI	2.7e-47	53.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036555mg PE=4 SV=1	[more]
V4UF21_9ROSI	1.8e-46	52.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016774mg PE=4 SV=1	[more]
A0A061DKM7_THECC	9.8e-45	48.61	Ubiquitin-protein ligase, putative OS=Theobroma cacao GN=TCM_002176 PE=4 SV=1	[more]

BLAST of Cucsa.185110 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03965.1	5.3e-34	47.28	RING/U-box superfamily protein	[more]
AT4G22250.1	7.2e-31	44.63	RING/U-box superfamily protein	[more]
AT1G62370.1	6.3e-27	40.91	RING/U-box superfamily protein	[more]
AT3G25030.1	7.7e-25	39.38	RING/U-box superfamily protein	[more]
AT4G13100.2	6.1e-22	35.15	RING/U-box superfamily protein	[more]

BLAST of Cucsa.185110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192764\|gb\|KGN47968.1\|	1.0e-95	100.00	hypothetical protein Csa_6G421620 [Cucumis sativus]	[more]
gi\|659097176\|ref\|XP_008449482.1\|	2.6e-91	95.86	PREDICTED: uncharacterized protein LOC103491356 [Cucumis melo]	[more]
gi\|703153220\|ref\|XP_010110624.1\|	1.8e-52	60.69	hypothetical protein L484_004822 [Morus notabilis]	[more]
gi\|641835332\|gb\|KDO54310.1\|	3.9e-47	53.13	hypothetical protein CISIN_1g036555mg [Citrus sinensis]	[more]
gi\|567910675\|ref\|XP_006447651.1\|	2.6e-46	52.33	hypothetical protein CICLE_v10016774mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.185110.1	Cucsa.185110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 121..158 score: 4.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 121..159 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 107..162 score: 1.7
None	No IPR available	PANTHER	PTHR12183	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	coord: 1..169 score: 3.1
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 119..164 score: 1.0
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 111..166 score: 1.86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.185110	Cla016286	Watermelon (97103) v1	cgywmB351
Cucsa.185110	Csa6G421620	Cucumber (Chinese Long) v2	cgycuB282
Cucsa.185110	MELO3C014436	Melon (DHL92) v3.5.1	cgymeB333
Cucsa.185110	CSPI06G22640	Wild cucumber (PI 183967)	cgycpiB292
Cucsa.185110	CmaCh11G019340	Cucurbita maxima (Rimu)	cgycmaB0521
Cucsa.185110	CmoCh19G010760	Cucurbita moschata (Rifu)	cgycmoB0526
Cucsa.185110	CmoCh11G020140	Cucurbita moschata (Rifu)	cgycmoB0523
Cucsa.185110	Lsi11G016710	Bottle gourd (USVL1VR-Ls)	cgylsiB309
Cucsa.185110	Cp4.1LG15g08410	Cucurbita pepo (Zucchini)	cgycpeB0504
Cucsa.185110	Cp4.1LG04g02670	Cucurbita pepo (Zucchini)	cgycpeB0511
Cucsa.185110	MELO3C014436.2	Melon (DHL92) v3.6.1	cgymedB328
Cucsa.185110	CsaV3_6G037770	Cucumber (Chinese Long) v3	cgycucB297
Cucsa.185110	Bhi05G001806	Wax gourd	cgywgoB379
Cucsa.185110	Carg04641	Silver-seed gourd	carcgyB0453
Cucsa.185110	Carg15708	Silver-seed gourd	carcgyB0611

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.185110	Watermelon (97103) v2	cgywmbB333
Cucsa.185110	Watermelon (97103) v2	cgywmbB339
Cucsa.185110	Wax gourd	cgywgoB382
Cucsa.185110	Cucurbita maxima (Rimu)	cgycmaB0524
Cucsa.185110	Cucurbita maxima (Rimu)	cgycmaB0529
Cucsa.185110	Cucurbita maxima (Rimu)	cgycmaB0533
Cucsa.185110	Cucurbita moschata (Rifu)	cgycmoB0531
Cucsa.185110	Cucurbita moschata (Rifu)	cgycmoB0535
Cucsa.185110	Cucumber (Chinese Long) v2	cgycuB283
Cucsa.185110	Watermelon (Charleston Gray)	cgywcgB327
Cucsa.185110	Watermelon (Charleston Gray)	cgywcgB332
Cucsa.185110	Watermelon (97103) v1	cgywmB356
Cucsa.185110	Cucurbita pepo (Zucchini)	cgycpeB0509
Cucsa.185110	Cucurbita pepo (Zucchini)	cgycpeB0515
Cucsa.185110	Bottle gourd (USVL1VR-Ls)	cgylsiB308