CmoCh11G020140 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G020140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein
Location	Cmo_Chr11 : 13747447 .. 13748845 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGAACGTATGACTTCAAGATTCTTTTCCCAAAAGTAGATTTGCGTTTGAAAGGGTTAAAGCCAGAAATGGTAGATGATGATCCCCACACAACACTCTCATGTGTGAACTACCCCATAGATTATTTCGTATTAACAATCATTTTCATAAAGTATTTCTTTTACTGAGTTGAGATACTTGAGATTATACTGTTCGGGATGGTGGGTTGTTGAAGAAAACTATGCACTACAAATTTATAACGATACATCATTTGTATTTATTATAGGCTTACAAGAGTAAATGGTGCATTCTCACCAAACAGGTTATAGCTTGAATGGCGCATAGGTCTACGTTTTCCCGCTCACACAGTGACAAATCAAACAGGCGGGTCCCCTTTTCCATATAGATCGAGAGCGACCCCTTCACGATTATTGCTTTACTATATCTCTTCATTGCCTGCTGCGGCTCCCCCCTCCACTCCAATGCCAGCCACAAAGTTTTTGATCAATCAGCTCATTCAATCTAACTACAGAAACTTTCTTTAGAGCCAACTTTTTCAGATATGGAAATGGAAATGGAATGAATGGACAGGGTATTGCCCGTCATTCTGCTTCCCAGTTTCTCTCTTCTACACCACCACTCAGCCATGGCAGACATGAAGTCCTGTTCCTGAAGGTCTACGGAACCCTTAAGAATTGGTTAGTAAGATCATTCACTCTTTCACAAAACCCACTTTTTCTTTCCTGATTTAGCTTCTTCTTTGGTCTGAAAAAGCACATTTTGAGGCATTCTTCTTTCTGGGTATGTCTGGATTGTTATCTTCTCTAACACCTGATACCATTTAGGATTCATTTTACTAGAACTCCTTTGTGGGTCTTTTTCGTGTCAGTCCAGCAATTTGGAGGGGAAATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATTGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTTGACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGGCGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGGTGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAGGAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACTACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA

mRNA sequence

ATGTCTAGAACGTATGACTTCAAGATTCTTTTCCCAAAAGTAGATTTGCGTTTGAAAGGGTTAAAGCCAGAAATGGTAGATGATGATCCCCACACAACACTCTCATGTGTGAACTACCCCATAGATTATTTCGTATTAACAATCATTTTCATAAAGCTTACAAGAGTAAATGGTGCATTCTCACCAAACAGATATGGAAATGGAAATGGAATGAATGGACAGGGTATTGCCCGTCATTCTGCTTCCCAGTTTCTCTCTTCTACACCACCACTCAGCCATGGCAGACATGAAGTCCTGTTCCTGAAGGTCTACGGAACCCTTAAGAATTGGTTACAATTTGGAGGGGAAATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATTGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTTGACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGGCGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGGTGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAGGAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACTACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA

Coding sequence (CDS)

ATGTCTAGAACGTATGACTTCAAGATTCTTTTCCCAAAAGTAGATTTGCGTTTGAAAGGGTTAAAGCCAGAAATGGTAGATGATGATCCCCACACAACACTCTCATGTGTGAACTACCCCATAGATTATTTCGTATTAACAATCATTTTCATAAAGCTTACAAGAGTAAATGGTGCATTCTCACCAAACAGATATGGAAATGGAAATGGAATGAATGGACAGGGTATTGCCCGTCATTCTGCTTCCCAGTTTCTCTCTTCTACACCACCACTCAGCCATGGCAGACATGAAGTCCTGTTCCTGAAGGTCTACGGAACCCTTAAGAATTGGTTACAATTTGGAGGGGAAATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATTGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTTGACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGGCGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGGTGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAGGAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACTACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA

Homology

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BLAST of CmoCh11G020140 vs. Swiss-Prot
Match: LUL4_ARATH (Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana GN=LUL4 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.6e-06
Identity = 22/49 (44.90%), Postives = 30/49 (61.22%), Query Frame = 1


Query: 236 CCVCMERSKGAAFIPCGHT-FCRVCSRELRLNGGTCPICSRSIIEILDI 284
           C +CM  +K  A +PC H   C  C++ELRL    CPIC + I E+L+I
Sbjct: 302 CVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEI 350

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BLAST of CmoCh11G020140 vs. TrEMBL
Match: A0A0A0KEL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421620 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.8e-72
Identity = 141/170 (82.94%), Postives = 152/170 (89.41%), Query Frame = 1


Query: 117 MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 176
           MER NR +RW NL+QRLGL KG+GCC GSWS TSSTLTMI+G  LS HGSSRS  +DG R
Sbjct: 1   MERANRRRRWTNLRQRLGL-KGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGR 60

Query: 177 SSAASGMNLAMALAAERNL-TEEGGPTVGN-VKSLVRLFEEIDGGDWKTRRKESENNGDW 236
           SSAASGMNLAMALAAERNL  +EGGPT G+ VKSL+RLFEE+DGGDWKT+RKESENNGDW
Sbjct: 61  SSAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDW 120

Query: 237 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 285
           +CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPICSRSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

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BLAST of CmoCh11G020140 vs. TrEMBL
Match: W9SUF0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004822 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 103/187 (55.08%), Postives = 127/187 (67.91%), Query Frame = 1


Query: 108 KNWLQFGGEMERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSS 167
           K+  + G +M+  +R  RW ++KQRLGL KG+GCCG +WS + STLT+I+ +    H   
Sbjct: 19  KDTQKTGQKMDGADRIGRWTSIKQRLGL-KGMGCCGATWSPSPSTLTIIETLEEEHH--- 78

Query: 168 RSHRDD----GTRSSAASGMNLAMALAAERNLTE-EGGPTV--GNVKSLVRLFEEIDGGD 227
             HR +    G   +A  GMNLAMALAAERN      GPT   G VKSL+ L EE+D  D
Sbjct: 79  --HRTEPVSVGPVQAAVPGMNLAMALAAERNSRAGREGPTTASGQVKSLMTLIEEMDDVD 138

Query: 228 WKTRRKESENNG---DWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSI 285
           W  RR+     G   DWLCCVCMER+KGAAFIPCGHTFCRVCSRE+ +N GTCP+CSR I
Sbjct: 139 WSNRRRRDNKEGGDSDWLCCVCMERNKGAAFIPCGHTFCRVCSREMWVNRGTCPLCSRPI 198

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BLAST of CmoCh11G020140 vs. TrEMBL
Match: A0A067EKA2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036555mg PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-38
Identity = 99/193 (51.30%), Postives = 116/193 (60.10%), Query Frame = 1


Query: 122 RGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMI--------DGIGLSRHGSSRSHRDD 181
           R + W NLKQRL L KG+GCCG  WS  + TLT++        +     R    R H  +
Sbjct: 7   RRRVWQNLKQRLRL-KGMGCCGSMWSFRTQTLTIMPRQEEEEEEPEEQERGTHVRMHMRN 66

Query: 182 GTRSSAASG------MNLAMALAAERNLTEEGGPTVGN-------VKSLVRLFEEIDGGD 241
              S  A+G      MNLAMALAAERNL    G  V         VK+L+ L EE DGGD
Sbjct: 67  AAASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGD 126

Query: 242 WKTRRKESENNG---------DWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCP 285
           W+ ++      G         DW+CCVCMER+KGAAFIPCGHTFCRVCSR+L LN GTCP
Sbjct: 127 WQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCP 186

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BLAST of CmoCh11G020140 vs. TrEMBL
Match: V4UF21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016774mg PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38
Identity = 99/194 (51.03%), Postives = 116/194 (59.79%), Query Frame = 1


Query: 122 RGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMI---------DGIGLSRHGSSRSHRD 181
           R + W NLKQRL L KG+GCCG  WS  + TLT++         +     R    R H  
Sbjct: 7   RTRVWQNLKQRLRL-KGMGCCGSMWSFRTQTLTIMPRQEEEEQEEPEEQERGTHVRMHMR 66

Query: 182 DGTRSSAASG------MNLAMALAAERNLTEEGGPTVGN-------VKSLVRLFEEIDGG 241
           +   S  A+G      MNLAMALAAERNL    G  V         VK+L+ L EE DGG
Sbjct: 67  NAAASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGG 126

Query: 242 DWKTRRKESENNG---------DWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTC 285
           DW+ ++      G         DW+CCVCMER+KGAAFIPCGHTFCRVCSR+L LN GTC
Sbjct: 127 DWQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTC 186

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BLAST of CmoCh11G020140 vs. TrEMBL
Match: F6HIE9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01370 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.3e-38
Identity = 99/183 (54.10%), Postives = 116/183 (63.39%), Query Frame = 1


Query: 117 MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLS---------RHGSS 176
           ME   R  RW NLKQRL   KGIGCCG SWS  +S++++++ I            R  S+
Sbjct: 1   MEGAERQGRWKNLKQRLRF-KGIGCCGSSWSYNASSMSILEEIHHEEEEELIIGVRPISA 60

Query: 177 RSHRDDGTRSS--AASGMNLAMALAAERNLTEEGGPTVGN----VKSLVRLFEEIDGGDW 236
            + R     S   AASGMNLA ALAAER     G  T       +K+L+RL EE DG D 
Sbjct: 61  TNRRSSAYVSQIPAASGMNLASALAAERKSRTVGPTTAAETAVPLKTLMRLIEETDGVDL 120

Query: 237 KTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEIL 285
              R + E  GD +CCVCMER+KGAAFIPCGHTFCRVCSREL LN G CPIC+RSI+EIL
Sbjct: 121 MKNR-DKEGGGDGVCCVCMERNKGAAFIPCGHTFCRVCSRELWLNRGCCPICNRSILEIL 180

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BLAST of CmoCh11G020140 vs. TAIR10
Match: AT4G03965.1 (AT4G03965.1 RING/U-box superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-28
Identity = 89/191 (46.60%), Postives = 107/191 (56.02%), Query Frame = 1


Query: 111 LQFGGEMERPNRGQRWANLKQRLGLMKGIGCCGGSWSS--TSSTLTMIDGIGLSRHGSSR 170
           LQ  G ++R  R +R   LK+RLG  K IGCCG +W    TS+T    D    +R  S  
Sbjct: 27  LQMDG-LDRSRRRKR--TLKERLGF-KRIGCCGPTWGLRLTSNTGEDDDEPFENRLVSGS 86

Query: 171 SHRDDGTRSSAASGMNLAMALAAERNL----TEEGGPTVGNVKSLVRLFEE----IDGGD 230
            H           GMNLA ALAAERN     TE  G       SL+RL EE    +   +
Sbjct: 87  DH----VTGPLNQGMNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEETAERVVVEE 146

Query: 231 WKTRRKESEN-------NGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPIC 285
            +T R  +         N D +CCVCM R KGAAFIPCGHTFCRVCSRE+ LN G+CP+C
Sbjct: 147 NETERVTASASSTVRGVNNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLC 206

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BLAST of CmoCh11G020140 vs. TAIR10
Match: AT4G22250.1 (AT4G22250.1 RING/U-box superfamily protein)

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-26
Identity = 80/187 (42.78%), Postives = 95/187 (50.80%), Query Frame = 1


Query: 124 QRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRS------ 183
           +R   LK+RL   K IGCCG +W+   +  T +          S + RDD          
Sbjct: 38  RRKRTLKERLRF-KCIGCCGPTWNLRLTNNTTLH---------SPTSRDDEIEELQIETG 97

Query: 184 -------SAASGMNLAMALAAER----NLTEEGGPTVGNVKSLVRLFEEIDGGDWKTRRK 243
                   + +GMNLA AL AER      TE          SL+RL EE          K
Sbjct: 98  LVLESDHGSGTGMNLATALEAERYNRGESTEAEADMTPRRVSLMRLLEETAEKIVDDDGK 157

Query: 244 ESE---------NNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSI 285
           E+E            D +CCVCM R KGAAFIPCGHTFCRVCSREL LN G+CP+C+R I
Sbjct: 158 ETEILTASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPI 214

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BLAST of CmoCh11G020140 vs. TAIR10
Match: AT1G62370.1 (AT1G62370.1 RING/U-box superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 9.8e-25
Identity = 77/185 (41.62%), Postives = 101/185 (54.59%), Query Frame = 1


Query: 116 EMERPNRGQR----WANLKQRLGLMKGIGCCGGSWS---STSSTLTMIDGIGLSRHGSSR 175
           E ++ N G R    W  LKQRL     +GCCG   +     + T  ++D         ++
Sbjct: 27  EEDQINGGDRTMSKWTTLKQRLRF-DWVGCCGKPLTLRLRQAETPIVVDDDDDEEESQNQ 86

Query: 176 --SHRDDGTRS-----SAASGMNLAMALAAER--NLTEEGGPTVGNVKSLVRLFEEIDGG 235
                D GT +     +  S  NLA ALA ER  ++TEE   T      L+RL  E DG 
Sbjct: 87  VVDFSDPGTGTELDCLTRGSTRNLAEALAEERLAHVTEE--ETAVTKVPLMRLLAESDGC 146

Query: 236 DWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIE 285
           D  T    +    D LCCVCM R KGAAFIPCGHT+CRVCSRE+ +N GTCP+C+RSI +
Sbjct: 147 DSTT----TWLGNDPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFD 204

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BLAST of CmoCh11G020140 vs. TAIR10
Match: AT3G25030.1 (AT3G25030.1 RING/U-box superfamily protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-19
Identity = 71/192 (36.98%), Postives = 100/192 (52.08%), Query Frame = 1


Query: 117 MERPNRGQR----WANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGS------ 176
           M+R +R  R    W +L+++L L +     G  W S++S  ++   I    + S      
Sbjct: 63  MQREHRHSRDKTAWKSLREKLRLKRN----GSVWISSNSIPSLDTPIPNRDNVSHQLGFL 122

Query: 177 -SRSHRDDGTRSSAASGMNLAMALAAERNLT--EEGGPTVGNVK----SLVRLFEEIDGG 236
            S S       SS    + L   LA ER L+  EE  P    V+    SL+ L EE +G 
Sbjct: 123 LSNSGNVTEEASSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQ 182

Query: 237 -DWKTRRKESENN------GDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPI 285
             + +   E+E         +  CCVCM RSKGAAFIPCGHTFCR+CSREL +  G CP+
Sbjct: 183 MSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPL 242

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BLAST of CmoCh11G020140 vs. TAIR10
Match: AT4G13100.2 (AT4G13100.2 RING/U-box superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 6.8e-18
Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 1


Query: 158 GIGLSRHGSSRSHRDDGTRSSAASG----MNLAMALAAERNLTEEGGPTVGNVKSLVRLF 217
           G  L+   ++RS RD    +  A+     + L   LAAER              SL+ L 
Sbjct: 126 GFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPR---------MSLMELL 185

Query: 218 EEIDGGDWK-TRRKESENNG-----------------DWLCCVCMERSKGAAFIPCGHTF 277
           E+ DG  ++ + R E E  G                 +  CCVCM RSKGAAFIPCGHTF
Sbjct: 186 EDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTF 245

Query: 278 CRVCSRELRLNGGTCPICSRSIIEILDIF 285
           CR+CSREL +  G CP+C+ +I+++LDIF
Sbjct: 246 CRLCSRELWVQRGNCPLCNTAILQVLDIF 265

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BLAST of CmoCh11G020140 vs. NCBI nr
Match: gi|659097176|ref|XP_008449482.1| (PREDICTED: uncharacterized protein LOC103491356 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 3.7e-74
Identity = 143/170 (84.12%), Postives = 154/170 (90.59%), Query Frame = 1


Query: 117 MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 176
           MER NRG+RWANLKQRLGL KG+GCC GSWS TSSTLTMI+G  LS HGSSRS R+DG R
Sbjct: 1   MERANRGRRWANLKQRLGL-KGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGR 60

Query: 177 SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLVRLFEEIDGGDWKTRRKESENNGDW 236
           SSAASGMNLAMALAAERNL ++EGGPT   +VKSL+RLFEE+DGGDWKT+RKE ENNGDW
Sbjct: 61  SSAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNGDW 120

Query: 237 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 285
           +CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPICSRSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

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BLAST of CmoCh11G020140 vs. NCBI nr
Match: gi|700192764|gb|KGN47968.1| (hypothetical protein Csa_6G421620 [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 2.7e-72
Identity = 141/170 (82.94%), Postives = 152/170 (89.41%), Query Frame = 1


Query: 117 MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 176
           MER NR +RW NL+QRLGL KG+GCC GSWS TSSTLTMI+G  LS HGSSRS  +DG R
Sbjct: 1   MERANRRRRWTNLRQRLGL-KGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGR 60

Query: 177 SSAASGMNLAMALAAERNL-TEEGGPTVGN-VKSLVRLFEEIDGGDWKTRRKESENNGDW 236
           SSAASGMNLAMALAAERNL  +EGGPT G+ VKSL+RLFEE+DGGDWKT+RKESENNGDW
Sbjct: 61  SSAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDW 120

Query: 237 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 285
           +CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPICSRSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of CmoCh11G020140 vs. NCBI nr
Match: gi|703153220|ref|XP_010110624.1| (hypothetical protein L484_004822 [Morus notabilis])

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 103/187 (55.08%), Postives = 127/187 (67.91%), Query Frame = 1


Query: 108 KNWLQFGGEMERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSS 167
           K+  + G +M+  +R  RW ++KQRLGL KG+GCCG +WS + STLT+I+ +    H   
Sbjct: 19  KDTQKTGQKMDGADRIGRWTSIKQRLGL-KGMGCCGATWSPSPSTLTIIETLEEEHH--- 78

Query: 168 RSHRDD----GTRSSAASGMNLAMALAAERNLTE-EGGPTV--GNVKSLVRLFEEIDGGD 227
             HR +    G   +A  GMNLAMALAAERN      GPT   G VKSL+ L EE+D  D
Sbjct: 79  --HRTEPVSVGPVQAAVPGMNLAMALAAERNSRAGREGPTTASGQVKSLMTLIEEMDDVD 138

Query: 228 WKTRRKESENNG---DWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSI 285
           W  RR+     G   DWLCCVCMER+KGAAFIPCGHTFCRVCSRE+ +N GTCP+CSR I
Sbjct: 139 WSNRRRRDNKEGGDSDWLCCVCMERNKGAAFIPCGHTFCRVCSREMWVNRGTCPLCSRPI 198

[Close]

BLAST of CmoCh11G020140 vs. NCBI nr
Match: gi|731409561|ref|XP_002271383.2| (PREDICTED: uncharacterized protein LOC100253430 [Vitis vinifera])

HSP 1 Score: 169.5 bits (428), Expect = 8.6e-39
Identity = 100/184 (54.35%), Postives = 117/184 (63.59%), Query Frame = 1


Query: 116 EMERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLS---------RHGS 175
           EME   R  RW NLKQRL   KGIGCCG SWS  +S++++++ I            R  S
Sbjct: 48  EMEGAERQGRWKNLKQRLRF-KGIGCCGSSWSYNASSMSILEEIHHEEEEELIIGVRPIS 107

Query: 176 SRSHRDDGTRSS--AASGMNLAMALAAERNLTEEGGPTVGN----VKSLVRLFEEIDGGD 235
           + + R     S   AASGMNLA ALAAER     G  T       +K+L+RL EE DG D
Sbjct: 108 ATNRRSSAYVSQIPAASGMNLASALAAERKSRTVGPTTAAETAVPLKTLMRLIEETDGVD 167

Query: 236 WKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEI 285
               R + E  GD +CCVCMER+KGAAFIPCGHTFCRVCSREL LN G CPIC+RSI+EI
Sbjct: 168 LMKNR-DKEGGGDGVCCVCMERNKGAAFIPCGHTFCRVCSRELWLNRGCCPICNRSILEI 227

[Close]

BLAST of CmoCh11G020140 vs. NCBI nr
Match: gi|641835332|gb|KDO54310.1| (hypothetical protein CISIN_1g036555mg [Citrus sinensis])

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 99/193 (51.30%), Postives = 116/193 (60.10%), Query Frame = 1


Query: 122 RGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMI--------DGIGLSRHGSSRSHRDD 181
           R + W NLKQRL L KG+GCCG  WS  + TLT++        +     R    R H  +
Sbjct: 7   RRRVWQNLKQRLRL-KGMGCCGSMWSFRTQTLTIMPRQEEEEEEPEEQERGTHVRMHMRN 66

Query: 182 GTRSSAASG------MNLAMALAAERNLTEEGGPTVGN-------VKSLVRLFEEIDGGD 241
              S  A+G      MNLAMALAAERNL    G  V         VK+L+ L EE DGGD
Sbjct: 67  AAASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGD 126

Query: 242 WKTRRKESENNG---------DWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCP 285
           W+ ++      G         DW+CCVCMER+KGAAFIPCGHTFCRVCSR+L LN GTCP
Sbjct: 127 WQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCP 186

The following BLAST results are available for this feature:

BLAST of CmoCh11G020140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LUL4_ARATH	9.6e-06	44.90	Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana GN=LUL4 PE=2 S...	[more]

BLAST of CmoCh11G020140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEL6_CUCSA	1.8e-72	82.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421620 PE=4 SV=1	[more]
W9SUF0_9ROSA	1.5e-45	55.08	Uncharacterized protein OS=Morus notabilis GN=L484_004822 PE=4 SV=1	[more]
A0A067EKA2_CITSI	1.0e-38	51.30	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036555mg PE=4 SV=1	[more]
V4UF21_9ROSI	1.3e-38	51.03	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016774mg PE=4 SV=1	[more]
F6HIE9_VITVI	2.3e-38	54.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01370 PE=4 SV=...	[more]

BLAST of CmoCh11G020140 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03965.1	1.1e-28	46.60	RING/U-box superfamily protein	[more]
AT4G22250.1	2.3e-26	42.78	RING/U-box superfamily protein	[more]
AT1G62370.1	9.8e-25	41.62	RING/U-box superfamily protein	[more]
AT3G25030.1	1.6e-19	36.98	RING/U-box superfamily protein	[more]
AT4G13100.2	6.8e-18	38.93	RING/U-box superfamily protein	[more]

BLAST of CmoCh11G020140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097176\|ref\|XP_008449482.1\|	3.7e-74	84.12	PREDICTED: uncharacterized protein LOC103491356 [Cucumis melo]	[more]
gi\|700192764\|gb\|KGN47968.1\|	2.7e-72	82.94	hypothetical protein Csa_6G421620 [Cucumis sativus]	[more]
gi\|703153220\|ref\|XP_010110624.1\|	2.1e-45	55.08	hypothetical protein L484_004822 [Morus notabilis]	[more]
gi\|731409561\|ref\|XP_002271383.2\|	8.6e-39	54.35	PREDICTED: uncharacterized protein LOC100253430 [Vitis vinifera]	[more]
gi\|641835332\|gb\|KDO54310.1\|	1.5e-38	51.30	hypothetical protein CISIN_1g036555mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G020140.1	CmoCh11G020140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 236..273 score: 6.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 236..274 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 223..277 score: 2.9
None	No IPR available	PANTHER	PTHR12183	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	coord: 137..284 score: 1.1
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 234..279 score: 3.8
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 227..281 score: 1.75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G020140	Cucsa.185110	Cucumber (Gy14) v1	cgycmoB0523
CmoCh11G020140	CmaCh19G010470	Cucurbita maxima (Rimu)	cmacmoB492
CmoCh11G020140	CmaCh11G019340	Cucurbita maxima (Rimu)	cmacmoB113
CmoCh11G020140	Cla016286	Watermelon (97103) v1	cmowmB072
CmoCh11G020140	Csa6G421620	Cucumber (Chinese Long) v2	cmocuB125
CmoCh11G020140	MELO3C014436	Melon (DHL92) v3.5.1	cmomeB124
CmoCh11G020140	CSPI06G22640	Wild cucumber (PI 183967)	cmocpiB126
CmoCh11G020140	Lsi11G016710	Bottle gourd (USVL1VR-Ls)	cmolsiB087
CmoCh11G020140	Cp4.1LG15g08410	Cucurbita pepo (Zucchini)	cmocpeB093
CmoCh11G020140	Cp4.1LG04g02670	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G020140	MELO3C014436.2	Melon (DHL92) v3.6.1	cmomedB133
CmoCh11G020140	CsaV3_6G037770	Cucumber (Chinese Long) v3	cmocucB0144
CmoCh11G020140	Bhi05G001806	Wax gourd	cmowgoB0117
CmoCh11G020140	Carg04641	Silver-seed gourd	carcmoB0523
CmoCh11G020140	Carg15708	Silver-seed gourd	carcmoB0722

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G020140	CmoCh19G010760	Cucurbita moschata (Rifu)	cmocmoB108

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G020140	Cucurbita maxima (Rimu)	cmacmoB539
CmoCh11G020140	Cucurbita maxima (Rimu)	cmacmoB576
CmoCh11G020140	Wild cucumber (PI 183967)	cmocpiB127
CmoCh11G020140	Cucumber (Chinese Long) v2	cmocuB126
CmoCh11G020140	Melon (DHL92) v3.5.1	cmomeB078
CmoCh11G020140	Watermelon (Charleston Gray)	cmowcgB073
CmoCh11G020140	Watermelon (Charleston Gray)	cmowcgB090
CmoCh11G020140	Watermelon (97103) v1	cmowmB112
CmoCh11G020140	Cucurbita pepo (Zucchini)	cmocpeB101
CmoCh11G020140	Cucurbita pepo (Zucchini)	cmocpeB132
CmoCh11G020140	Bottle gourd (USVL1VR-Ls)	cmolsiB078
CmoCh11G020140	Cucumber (Gy14) v2	cgybcmoB691
CmoCh11G020140	Cucumber (Gy14) v2	cgybcmoB692
CmoCh11G020140	Melon (DHL92) v3.6.1	cmomedB084
CmoCh11G020140	Silver-seed gourd	carcmoB0038
CmoCh11G020140	Cucumber (Chinese Long) v3	cmocucB0145
CmoCh11G020140	Watermelon (97103) v2	cmowmbB090
CmoCh11G020140	Watermelon (97103) v2	cmowmbB137
CmoCh11G020140	Wax gourd	cmowgoB0127
CmoCh11G020140	Cucurbita moschata (Rifu)	cmocmoB114
CmoCh11G020140	Cucurbita moschata (Rifu)	cmocmoB121