Carg04641 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04641
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ubiquitin-protein ligase, putative
Location	Cucurbita_argyrosperma_scaffold_028 : 184774 .. 185280 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATGGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTTGACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGGCGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGATGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAGGAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACTACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA

mRNA sequence

ATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATGGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTTGACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGGCGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGATGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAGGAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACTACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA

Coding sequence (CDS)

ATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATGGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTTGACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGGCGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGATGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAGGAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACTACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA

Protein sequence

MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

Homology

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BLAST of Carg04641 vs. NCBI nr
Match: XP_022930871.1 (uncharacterized protein LOC111437226 [Cucurbita moschata] >XP_022930872.1 uncharacterized protein LOC111437226 [Cucurbita moschata] >XP_022930873.1 uncharacterized protein LOC111437226 [Cucurbita moschata])

HSP 1 Score: 345.9 bits (886), Expect = 7.7e-92
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 60
           MERPNRGQRWANLKQRLGLMKG+GCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR
Sbjct: 62  MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 121

Query: 61  SSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLC 120
           SSAASGMNLAMALAAERNLTEEGGPTVGNVKSL+RLFEEIDGGDWKTRRKESENNGDWLC
Sbjct: 122 SSAASGMNLAMALAAERNLTEEGGPTVGNVKSLVRLFEEIDGGDWKTRRKESENNGDWLC 181

Query: 121 CVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
           CVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
Sbjct: 182 CVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 229

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BLAST of Carg04641 vs. NCBI nr
Match: XP_023531397.1 (uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398.1 uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.9 bits (886), Expect = 7.7e-92
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 60
           MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR
Sbjct: 62  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 121

Query: 61  SSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLC 120
           SSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLC
Sbjct: 122 SSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLC 181

Query: 121 CVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
           CVCMERSKGAAFIPCGHTFCRVCSREL LNGGTCPICSRSIIEILDIF
Sbjct: 182 CVCMERSKGAAFIPCGHTFCRVCSRELWLNGGTCPICSRSIIEILDIF 229

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BLAST of Carg04641 vs. NCBI nr
Match: XP_022988657.1 (RING finger protein 141-like [Cucurbita maxima] >XP_022988658.1 RING finger protein 141-like [Cucurbita maxima] >XP_022988659.1 RING finger protein 141-like [Cucurbita maxima] >XP_022988660.1 RING finger protein 141-like [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 5.0e-91
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 60
           MERPNRGQRWANLKQRLGLMKGMGCCGG+WSSTSSTLTMIDGIGLSRHGSSRSHRDDG R
Sbjct: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGAWSSTSSTLTMIDGIGLSRHGSSRSHRDDGIR 60

Query: 61  SSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLC 120
           SSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLC
Sbjct: 61  SSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLC 120

Query: 121 CVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
           CVCMERSKGAAFIPCGHTFCRVCSRELRL GGTCPICSRSIIEILDIF
Sbjct: 121 CVCMERSKGAAFIPCGHTFCRVCSRELRLKGGTCPICSRSIIEILDIF 168

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BLAST of Carg04641 vs. NCBI nr
Match: XP_022953088.1 (RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022969345.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_022969346.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_023511758.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >XP_023511759.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.8 bits (756), Expect = 9.2e-77
Identity = 146/170 (85.88%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 60
           MER N G+RWANLKQRLGL KGMGCCGGSWS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60

Query: 61  SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFEEIDGGDWKTRRKESENNGDW 120
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSLMRLFEE+DGGDWKT+RKESEN GDW
Sbjct: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120

Query: 121 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
           +CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPIC+RSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169

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BLAST of Carg04641 vs. NCBI nr
Match: KGN47968.1 (hypothetical protein Csa_6G421620 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 8.0e-73
Identity = 143/170 (84.12%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 60
           MER NR +RW NL+QRLGL KGMGCC GSWS TSSTLTMI+G  LS HGSSRS  +DG R
Sbjct: 1   MERANRRRRWTNLRQRLGL-KGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGR 60

Query: 61  SSAASGMNLAMALAAERNL-TEEGGPTVG-NVKSLMRLFEEIDGGDWKTRRKESENNGDW 120
           SSAASGMNLAMALAAERNL  +EGGPT G +VKSLMRLFEE+DGGDWKT+RKESENNGDW
Sbjct: 61  SSAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDW 120

Query: 121 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
           +CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPICSRSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

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BLAST of Carg04641 vs. TAIR10
Match: AT4G03965.1 (RING/U-box superfamily protein)

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-28
Identity = 84/185 (45.41%), Postives = 104/185 (56.22%), Query Frame = 0


Query: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGSWS--STSSTLTMIDGIGLSRHGSSRSHRDDG 60
           ++R  R +R   LK+RLG  K +GCCG +W    TS+T    D    +R  S   H    
Sbjct: 32  LDRSRRRKR--TLKERLG-FKRIGCCGPTWGLRLTSNTGEDDDEPFENRLVSGSDH---- 91

Query: 61  TRSSAASGMNLAMALAAERNL----TEEGGPTVGNVKSLMRLFEE------IDGGDWKTR 120
                  GMNLA ALAAERN     TE  G       SLMRL EE      ++  + +  
Sbjct: 92  VTGPLNQGMNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEETAERVVVEENETERV 151

Query: 121 RKESEN-----NGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIE 169
              + +     N D +CCVCM R KGAAFIPCGHTFCRVCSRE+ LN G+CP+C+R IIE
Sbjct: 152 TASASSTVRGVNNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIE 209

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BLAST of Carg04641 vs. TAIR10
Match: AT4G22250.1 (RING/U-box superfamily protein)

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-26
Identity = 80/187 (42.78%), Postives = 95/187 (50.80%), Query Frame = 0


Query: 8   QRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRS------ 67
           +R   LK+RL   K +GCCG +W+   +  T +          S + RDD          
Sbjct: 38  RRKRTLKERL-RFKCIGCCGPTWNLRLTNNTTL---------HSPTSRDDEIEELQIETG 97

Query: 68  -------SAASGMNLAMALAAER----NLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRK 127
                   + +GMNLA AL AER      TE          SLMRL EE          K
Sbjct: 98  LVLESDHGSGTGMNLATALEAERYNRGESTEAEADMTPRRVSLMRLLEETAEKIVDDDGK 157

Query: 128 ESE---------NNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSI 169
           E+E            D +CCVCM R KGAAFIPCGHTFCRVCSREL LN G+CP+C+R I
Sbjct: 158 ETEILTASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPI 214

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BLAST of Carg04641 vs. TAIR10
Match: AT1G62370.1 (RING/U-box superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-23
Identity = 72/172 (41.86%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 9   RWANLKQRLGLMKGMGCCGGSWS-----STSSTLTMIDGIGLSRHGSSRSHRDDGTRS-- 68
           +W  LKQRL     +GCCG   +     + +                     D GT +  
Sbjct: 40  KWTTLKQRL-RFDWVGCCGKPLTLRLRQAETPIXXXXXXXXXXXXXXVVDFSDPGTGTEL 99

Query: 69  ---SAASGMNLAMALAAER--NLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNG 128
              +  S  NLA ALA ER  ++TEE   T      LMRL  E DG D  T    +    
Sbjct: 100 DCLTRGSTRNLAEALAEERLAHVTEE--ETAVTKVPLMRLLAESDGCDSTT----TWLGN 159

Query: 129 DWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
           D LCCVCM R KGAAFIPCGHT+CRVCSRE+ +N GTCP+C+RSI ++LD++
Sbjct: 160 DPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204

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BLAST of Carg04641 vs. TAIR10
Match: AT3G25030.1 (RING/U-box superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-20
Identity = 72/192 (37.50%), Postives = 100/192 (52.08%), Query Frame = 0


Query: 1   MERPNRGQR----WANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGS------ 60
           M+R +R  R    W +L+++L L +     G  W S++S  ++   I    + S      
Sbjct: 63  MQREHRHSRDKTAWKSLREKLRLKRN----GSVWISSNSIPSLDTPIPNRDNVSHQLGFL 122

Query: 61  -SRSHRDDGTRSSAASGMNLAMALAAERNLT--EEGGPTVGNVK----SLMRLFEEIDGG 120
            S S       SS    + L   LA ER L+  EE  P    V+    SLM L EE +G 
Sbjct: 123 LSNSGNVTEEASSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQ 182

Query: 121 -DWKTRRKESENN------GDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPI 169
             + +   E+E         +  CCVCM RSKGAAFIPCGHTFCR+CSREL +  G CP+
Sbjct: 183 MSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPL 242

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BLAST of Carg04641 vs. TAIR10
Match: AT4G13100.2 (RING/U-box superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-18
Identity = 59/149 (39.60%), Postives = 78/149 (52.35%), Query Frame = 0


Query: 42  GIGLSRHGSSRSHRDDGTRSSAAS----GMNLAMALAAERNLTEEGGPTVGNVKSLMRLF 101
           G  L+   ++RS RD    +  A+     + L   LAAER              SLM L 
Sbjct: 126 GFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPR---------MSLMELL 185

Query: 102 EEIDGGDWK-TRRKESENNG-----------------DWLCCVCMERSKGAAFIPCGHTF 161
           E+ DG  ++ + R E E  G                 +  CCVCM RSKGAAFIPCGHTF
Sbjct: 186 EDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTF 245

Query: 162 CRVCSRELRLNGGTCPICSRSIIEILDIF 169
           CR+CSREL +  G CP+C+ +I+++LDIF
Sbjct: 246 CRLCSRELWVQRGNCPLCNTAILQVLDIF 265

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BLAST of Carg04641 vs. Swiss-Prot
Match: sp|Q8LA32|LUL4_ARATH (Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.8e-06
Identity = 22/49 (44.90%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 120 CCVCMERSKGAAFIPCGH-TFCRVCSRELRLNGGTCPICSRSIIEILDI 168
           C +CM  +K  A +PC H   C  C++ELRL    CPIC + I E+L+I
Sbjct: 302 CVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEI 350

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BLAST of Carg04641 vs. Swiss-Prot
Match: sp|P43254|COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-04
Identity = 24/77 (31.17%), Postives = 34/77 (44.16%), Query Frame = 0


Query: 85  PTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCS 144
           P   +V       E  DGG   +     + + D LC +CM+  K A    CGH+FC +C 
Sbjct: 17  PRTSSVGEGANRHENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCI 76

Query: 145 RELRLNGGTCPICSRSI 162
                N   CP CS+ +
Sbjct: 77  ITHLRNKSDCPCCSQHL 93

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BLAST of Carg04641 vs. TrEMBL
Match: tr|A0A0A0KEL6|A0A0A0KEL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 5.3e-73
Identity = 143/170 (84.12%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 60
           MER NR +RW NL+QRLGL KGMGCC GSWS TSSTLTMI+G  LS HGSSRS  +DG R
Sbjct: 1   MERANRRRRWTNLRQRLGL-KGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGR 60

Query: 61  SSAASGMNLAMALAAERNL-TEEGGPTVG-NVKSLMRLFEEIDGGDWKTRRKESENNGDW 120
           SSAASGMNLAMALAAERNL  +EGGPT G +VKSLMRLFEE+DGGDWKT+RKESENNGDW
Sbjct: 61  SSAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDW 120

Query: 121 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
           +CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPICSRSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of Carg04641 vs. TrEMBL
Match: tr|W9SUF0|W9SUF0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004822 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.6e-45
Identity = 103/178 (57.87%), Postives = 122/178 (68.54%), Query Frame = 0


Query: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDD--- 60
           M+  +R  RW ++KQRLGL KGMGCCG +WS + STLT+I+ +    H     HR +   
Sbjct: 28  MDGADRIGRWTSIKQRLGL-KGMGCCGATWSPSPSTLTIIETLEEEHH-----HRTEPVS 87

Query: 61  -GTRSSAASGMNLAMALAAERN-LTEEGGPTV--GNVKSLMRLFEEIDGGDWKTRRKESE 120
            G   +A  GMNLAMALAAERN      GPT   G VKSLM L EE+D  DW  RR+   
Sbjct: 88  VGPVQAAVPGMNLAMALAAERNSRAGREGPTTASGQVKSLMTLIEEMDDVDWSNRRRRDN 147

Query: 121 NNG---DWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
             G   DWLCCVCMER+KGAAFIPCGHTFCRVCSRE+ +N GTCP+CSR I+EILDI+
Sbjct: 148 KEGGDSDWLCCVCMERNKGAAFIPCGHTFCRVCSREMWVNRGTCPLCSRPIVEILDIY 199

[Close]

BLAST of Carg04641 vs. TrEMBL
Match: tr|A0A2N9ETE4|A0A2N9ETE4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5843 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-44
Identity = 101/167 (60.48%), Postives = 119/167 (71.26%), Query Frame = 0


Query: 7   GQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHR--DDGTRSSAA 66
           G+RW NLKQRLG  KGMGCCG +WS TSSTLT+++                 +     A 
Sbjct: 3   GRRWTNLKQRLG-FKGMGCCGATWSPTSSTLTILEXXXXXXXXXXXXXXLVSNVNHVQAP 62

Query: 67  SGMNLAMALAAERNLTE--EGGPTVGNVKSLMRLFEEIDGGDW-KTRRKESENNGDWLCC 126
           +GMNLAMALAAERN  +   G PT   VK+LMRL EE DG DW K RR++   + DW+CC
Sbjct: 63  TGMNLAMALAAERNSRDGNVGHPT--QVKTLMRLIEETDGVDWRKKRRRDKGVDSDWVCC 122

Query: 127 VCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
           VCMERSKGAAFIPCGHTFCRVCSREL +N G+CP+C+RSI+EILDIF
Sbjct: 123 VCMERSKGAAFIPCGHTFCRVCSRELWVNRGSCPLCNRSILEILDIF 166

[Close]

BLAST of Carg04641 vs. TrEMBL
Match: tr|A0A2I4GA70|A0A2I4GA70_9ROSI (uncharacterized protein LOC109006075 isoform X1 OS=Juglans regia OX=51240 GN=LOC109006075 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 98/173 (56.65%), Postives = 121/173 (69.94%), Query Frame = 0


Query: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 60
           M+  + G+RW +LK+RLG  KGMGCCG     TSS+ + ++ +  + H          T 
Sbjct: 94  MDSGDPGRRWTSLKERLG-FKGMGCCGSRRRPTSSSFSTLETLQENPH----------TA 153

Query: 61  SSAASGMNLAMALAAERNLTEE--GGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNG-- 120
              +SGMNLAMALAAERN  EE   GP    VK+LMRL EE DG DW+ +R+  +N G  
Sbjct: 154 PPLSSGMNLAMALAAERNSREEKDEGPAT-EVKTLMRLIEETDGVDWRKKRRR-DNKGAD 213

Query: 121 -DWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
            DW+CCVCMERSKGAAFIPCGHTFCRVCSRE+ +N GTCP+C+RSI+EILDIF
Sbjct: 214 TDWVCCVCMERSKGAAFIPCGHTFCRVCSREMWVNRGTCPLCNRSILEILDIF 253

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BLAST of Carg04641 vs. TrEMBL
Match: tr|A0A2I4GA66|A0A2I4GA66_9ROSI (uncharacterized protein LOC109006075 isoform X2 OS=Juglans regia OX=51240 GN=LOC109006075 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 98/173 (56.65%), Postives = 121/173 (69.94%), Query Frame = 0


Query: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 60
           M+  + G+RW +LK+RLG  KGMGCCG     TSS+ + ++ +  + H          T 
Sbjct: 93  MDSGDPGRRWTSLKERLG-FKGMGCCGSRRRPTSSSFSTLETLQENPH----------TA 152

Query: 61  SSAASGMNLAMALAAERNLTEE--GGPTVGNVKSLMRLFEEIDGGDWKTRRKESENNG-- 120
              +SGMNLAMALAAERN  EE   GP    VK+LMRL EE DG DW+ +R+  +N G  
Sbjct: 153 PPLSSGMNLAMALAAERNSREEKDEGPAT-EVKTLMRLIEETDGVDWRKKRRR-DNKGAD 212

Query: 121 -DWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 169
            DW+CCVCMERSKGAAFIPCGHTFCRVCSRE+ +N GTCP+C+RSI+EILDIF
Sbjct: 213 TDWVCCVCMERSKGAAFIPCGHTFCRVCSREMWVNRGTCPLCNRSILEILDIF 252

The following BLAST results are available for this feature:

BLAST of Carg04641 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930871.1	7.7e-92	98.81	uncharacterized protein LOC111437226 [Cucurbita moschata] >XP_022930872.1 unchar...	[more]
XP_023531397.1	7.7e-92	99.40	uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398....	[more]
XP_022988657.1	5.0e-91	98.21	RING finger protein 141-like [Cucurbita maxima] >XP_022988658.1 RING finger prot...	[more]
XP_022953088.1	9.2e-77	85.88	RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding ...	[more]
KGN47968.1	8.0e-73	84.12	hypothetical protein Csa_6G421620 [Cucumis sativus]	[more]

BLAST of Carg04641 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03965.1	2.5e-28	45.41	RING/U-box superfamily protein	[more]
AT4G22250.1	1.8e-26	42.78	RING/U-box superfamily protein	[more]
AT1G62370.1	1.4e-23	41.86	RING/U-box superfamily protein	[more]
AT3G25030.1	5.6e-20	37.50	RING/U-box superfamily protein	[more]
AT4G13100.2	1.8e-18	39.60	RING/U-box superfamily protein	[more]

BLAST of Carg04641 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LA32\|LUL4_ARATH	5.8e-06	44.90	Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL...	[more]
sp\|P43254\|COP1_ARATH	1.4e-04	31.17	E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV...	[more]

BLAST of Carg04641 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KEL6\|A0A0A0KEL6_CUCSA	5.3e-73	84.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 PE=4 SV=1	[more]
tr\|W9SUF0\|W9SUF0_9ROSA	1.6e-45	57.87	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004822 PE=4 SV=1	[more]
tr\|A0A2N9ETE4\|A0A2N9ETE4_FAGSY	1.0e-44	60.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5843 PE=4 SV=1	[more]
tr\|A0A2I4GA70\|A0A2I4GA70_9ROSI	1.7e-42	56.65	uncharacterized protein LOC109006075 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4GA66\|A0A2I4GA66_9ROSI	1.7e-42	56.65	uncharacterized protein LOC109006075 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04641-RA	Carg04641-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 120..157 e-value: 6.9E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 120..158 score: 11.442
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 102..168 e-value: 5.2E-15 score: 56.7
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 119..163 e-value: 1.5E-12 score: 47.0
None	No IPR available	PANTHER	PTHR12183	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	coord: 7..168
None	No IPR available	PANTHER	PTHR12183:SF22	SUBFAMILY NOT NAMED	coord: 7..168
None	No IPR available	CDD	cd16449	RING-HC	coord: 120..157 e-value: 8.42682E-8 score: 44.7657
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 111..165

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04641	Cla016286	Watermelon (97103) v1	carwmB0380
Carg04641	Csa6G421620	Cucumber (Chinese Long) v2	carcuB0421
Carg04641	MELO3C014436	Melon (DHL92) v3.5.1	carmeB0397
Carg04641	CSPI06G22640	Wild cucumber (PI 183967)	carcpiB0425
Carg04641	Cucsa.185110	Cucumber (Gy14) v1	carcgyB0453
Carg04641	CmaCh19G010470	Cucurbita maxima (Rimu)	carcmaB0547
Carg04641	CmaCh11G019340	Cucurbita maxima (Rimu)	carcmaB0537
Carg04641	CmoCh19G010760	Cucurbita moschata (Rifu)	carcmoB0532
Carg04641	CmoCh11G020140	Cucurbita moschata (Rifu)	carcmoB0523
Carg04641	Lsi11G016710	Bottle gourd (USVL1VR-Ls)	carlsiB352
Carg04641	Cp4.1LG15g08410	Cucurbita pepo (Zucchini)	carcpeB0541
Carg04641	Cp4.1LG04g02670	Cucurbita pepo (Zucchini)	carcpeB0547
Carg04641	MELO3C014436.2	Melon (DHL92) v3.6.1	carmedB0401
Carg04641	CsaV3_6G037770	Cucumber (Chinese Long) v3	carcucB0423
Carg04641	Bhi05G001806	Wax gourd	carwgoB0471

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04641	Carg15708	Silver-seed gourd	carcarB415

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04641	Silver-seed gourd	carcarB031
Carg04641	Cucumber (Gy14) v2	carcgybB0398
Carg04641	Cucumber (Gy14) v2	carcgybB0399
Carg04641	Cucurbita maxima (Rimu)	carcmaB0548
Carg04641	Cucurbita maxima (Rimu)	carcmaB0549
Carg04641	Cucurbita moschata (Rifu)	carcmoB0533
Carg04641	Cucurbita moschata (Rifu)	carcmoB0534
Carg04641	Cucurbita pepo (Zucchini)	carcpeB0542
Carg04641	Cucurbita pepo (Zucchini)	carcpeB0549
Carg04641	Wild cucumber (PI 183967)	carcpiB0426
Carg04641	Cucumber (Chinese Long) v2	carcuB0422
Carg04641	Cucumber (Chinese Long) v3	carcucB0424
Carg04641	Bottle gourd (USVL1VR-Ls)	carlsiB351
Carg04641	Melon (DHL92) v3.5.1	carmeB0391
Carg04641	Melon (DHL92) v3.6.1	carmedB0395
Carg04641	Watermelon (Charleston Gray)	carwcgB0378
Carg04641	Watermelon (Charleston Gray)	carwcgB0381
Carg04641	Watermelon (97103) v1	carwmB0389
Carg04641	Watermelon (97103) v2	carwmbB0407
Carg04641	Watermelon (97103) v2	carwmbB0418
Carg04641	Wax gourd	carwgoB0472