Csa6G421620 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G421620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPutative RING zinc finger domain superfamily protein; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
LocationChr6 : 19427202 .. 19428425 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGCAATCAAACATGGCGGGTCCCCTTTTCCATATAGATCGAGATCGATGCCTGCACGTTTATTGCTTTACTCTCTCTTCATTGCCTGCTGCGGCGCGCTCCCCTCCACTCCAATGCTAACCACAAAGTCTTTGATCAATCACCTCATTCAATTCAACTTCACAAGCTTCCCTTAGAACCAACTTCTTCAGTTCAGATATGGAATTGGAATGAATGGCAGACATGGCATGGCCCTTCATTCTACTTCCGAGTGTCTCTCTTCTTCACCTCCACTCGATATTGGCGGACTTCTTTCAGCTCAGTTAATGACGTCCTATCCCTGAAGATCTACAGAAAACCCAAAACTGGTTAGTAGGATCATTATCTCTTTCATGAAAAACCAACTTTTCTTTTCTTGATTTTGCACCTTTGTTTTGAAAAGACATTGTTTGAGGCATTCTTCTTTGTGGGTATCTCTGGTTTATTCTCTGTTTCATTTCACACCATAATCCCTTTTCGGGGTTCGTTGTGTCAGATTGGTATCTAGACGAAATTTGAAGAGGAAATGGAGCGGGCTAATCGAAGGCGGAGATGGACAAATTTAAGGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAATGACGAAGGAGGCCCCACGGGGGGTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAAAATTTTTCAAAAACTCATTTTTGTTTTCCTAAAATTATTATCTCAATGTGATTTGTTTTTGTTTTATTTTGTGGTTTTGGTATATTTTTATTTTCCTCTGATAGGTATGATGGAAGGATAAGGCTGCACGTGTTCATCAAAATTACATCATCCAAATATAACATTCTAA

mRNA sequence

ATGGAGCGGGCTAATCGAAGGCGGAGATGGACAAATTTAAGGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAATGACGAAGGAGGCCCCACGGGGGGTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAA

Coding sequence (CDS)

ATGGAGCGGGCTAATCGAAGGCGGAGATGGACAAATTTAAGGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAATGACGAAGGAGGCCCCACGGGGGGTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAA

Protein sequence

MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRSSAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF*
Homology
[Close]
BLAST of Csa6G421620 vs. Swiss-Prot
Match: IAP4_OSHVF (Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN=ORF106 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-06
Identity = 28/80 (35.00%), Postives = 39/80 (48.75%), Query Frame = 1 

Query: 99  EEMDGG-----DWKTKRKESENNGDWMCCVCMERSKGAAFIPCGHTF-CRVCSRELWLN- 158
           +E DGG     ++    KE EN     C  C ER    AFIPCGH F C +C+ E++ + 
Sbjct: 378 KEEDGGGGGVIEFPKNNKEVENPKRGSCKACYERKADIAFIPCGHVFSCNICTMEMFASY 437

Query: 159 --RGTCPICSRSIIEILDIF 170
             +  CP+C   + ++  IF
Sbjct: 438 KKKKRCPMCRVHVEKVQKIF 457

[Close]
BLAST of Csa6G421620 vs. TrEMBL
Match: A0A0A0KEL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421620 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 7.1e-96
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 

Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120
           SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]
BLAST of Csa6G421620 vs. TrEMBL
Match: W9SUF0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004822 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 105/173 (60.69%), Postives = 124/173 (71.68%), Query Frame = 1 

Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           M+ A+R  RWT+++QRLGLKGMGCC  +WSP+ STLT+IE      H  +      G   
Sbjct: 28  MDGADRIGRWTSIKQRLGLKGMGCCGATWSPSPSTLTIIETLEEEHHHRTEPVSV-GPVQ 87

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGS-DVKSLMRLFEEMDGGDWKTKRKESENNG-- 120
           +A  GMNLAMALAAERN R    GPT  S  VKSLM L EEMD  DW  +R+     G  
Sbjct: 88  AAVPGMNLAMALAAERNSRAGREGPTTASGQVKSLMTLIEEMDDVDWSNRRRRDNKEGGD 147

Query: 121 -DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
            DW+CCVCMER+KGAAFIPCGHTFCRVCSRE+W+NRGTCP+CSR I+EILDI+
Sbjct: 148 SDWLCCVCMERNKGAAFIPCGHTFCRVCSREMWVNRGTCPLCSRPIVEILDIY 199

[Close]
BLAST of Csa6G421620 vs. TrEMBL
Match: A0A067EKA2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036555mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-47
Identity = 102/192 (53.12%), Postives = 120/192 (62.50%), Query Frame = 1 

Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI--------------EGFSLSLHGSSR 65
           RRR W NL+QRL LKGMGCC   WS  + TLT++               G  + +H  + 
Sbjct: 7   RRRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEEEPEEQERGTHVRMHMRNA 66

Query: 66  SQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGDW 125
           +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGDW
Sbjct: 67  AASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGDW 126

Query: 126 KTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPI 170
           + K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCPI
Sbjct: 127 QMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPI 186

[Close]
BLAST of Csa6G421620 vs. TrEMBL
Match: V4UF21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016774mg PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-46
Identity = 101/193 (52.33%), Postives = 119/193 (61.66%), Query Frame = 1 

Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI---------------EGFSLSLHGSS 65
           R R W NL+QRL LKGMGCC   WS  + TLT++                G  + +H  +
Sbjct: 7   RTRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEQEEPEEQERGTHVRMHMRN 66

Query: 66  RSQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGD 125
            +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGD
Sbjct: 67  AAASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGD 126

Query: 126 WKTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
           W+ K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCP
Sbjct: 127 WQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCP 186

[Close]
BLAST of Csa6G421620 vs. TrEMBL
Match: A0A061DKM7_THECC (Ubiquitin-protein ligase, putative OS=Theobroma cacao GN=TCM_002176 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.8e-45
Identity = 105/216 (48.61%), Postives = 131/216 (60.65%), Query Frame = 1 

Query: 5   NRRRRWTNLRQRLGLKGMGCCRGSWSPTS--STLTMIEGFS-----------------LS 64
           +RR  W NL+QRLGLK MGCC  +WSP +  ST++++E                    +S
Sbjct: 7   DRRASWKNLKQRLGLKAMGCCGATWSPRARISTISILEEDEDEEEEAAAVAAQSQQVIIS 66

Query: 65  LHGS---SRSQGEDGGRSS---------------AASGMNLAMALAAERNLRNDEGGPTG 124
             G+   +R Q +    +S               A SGMNLAMALAAERNLR    GP+ 
Sbjct: 67  RSGNVVNNRIQNQTENSASTPLLVGQQQQQQVPTAGSGMNLAMALAAERNLRTANMGPS- 126

Query: 125 GSDVKSLMRLFEEMDGGDWKTKRKESENN--------------GDWMCCVCMERSKGAAF 170
            ++VK+LMRL EE DG DWK KRK++  N               DWMCCVCMER KGAAF
Sbjct: 127 PTEVKTLMRLIEETDGVDWKKKRKDNVVNVEGVGVGGLGGGGSCDWMCCVCMERKKGAAF 186

[Close]
BLAST of Csa6G421620 vs. TAIR10
Match: AT4G03965.1 (AT4G03965.1 RING/U-box superfamily protein)

HSP 1 Score: 141.4 bits (355), Expect = 5.3e-34
Identity = 87/184 (47.28%), Postives = 106/184 (57.61%), Query Frame = 1 

Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRS-QGEDGGR 60
           ++R+ RR+R   L++RLG K +GCC  +W      LT   G        +R   G D   
Sbjct: 32  LDRSRRRKR--TLKERLGFKRIGCCGPTWG---LRLTSNTGEDDDEPFENRLVSGSDHVT 91

Query: 61  SSAASGMNLAMALAAERNLRNDEGGPTGG-SDVK-SLMRLFEEMDGGDWKTKRKESEN-- 120
                GMNLA ALAAERN R +E   +G  + +K SLMRL EE        +  E+E   
Sbjct: 92  GPLNQGMNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEET-AERVVVEENETERVT 151

Query: 121 ----------NGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEI 170
                     N D +CCVCM R KGAAFIPCGHTFCRVCSRE+WLNRG+CP+C+R IIEI
Sbjct: 152 ASASSTVRGVNNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEI 209

[Close]
BLAST of Csa6G421620 vs. TAIR10
Match: AT4G22250.1 (AT4G22250.1 RING/U-box superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 7.2e-31
Identity = 79/177 (44.63%), Postives = 94/177 (53.11%), Query Frame = 1 

Query: 8   RRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDG----GRSSAA 67
           RR   L++RL  K +GCC  +W+   +  T +   +         Q E G        + 
Sbjct: 38  RRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHSPTSRDDEIEELQIETGLVLESDHGSG 97

Query: 68  SGMNLAMALAAERNLRNDEGGPTGGSDVK--SLMRLFEEMDGGDWKTKRKESE------- 127
           +GMNLA AL AER  R +          +  SLMRL EE          KE+E       
Sbjct: 98  TGMNLATALEAERYNRGESTEAEADMTPRRVSLMRLLEETAEKIVDDDGKETEILTASIG 157

Query: 128 --NNGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
                D +CCVCM R KGAAFIPCGHTFCRVCSRELWLNRG+CP+C+R IIEILDIF
Sbjct: 158 TLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 214

[Close]
BLAST of Csa6G421620 vs. TAIR10
Match: AT1G62370.1 (AT1G62370.1 RING/U-box superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-27
Identity = 72/176 (40.91%), Postives = 92/176 (52.27%), Query Frame = 1 

Query: 9   RWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIE-------------GFSLSLHGSSRSQGE 68
           +WT L+QRL    +GCC     P +  L   E               +  +  S    G 
Sbjct: 40  KWTTLKQRLRFDWVGCCG---KPLTLRLRQAETPIVVDDDDDEEESQNQVVDFSDPGTGT 99

Query: 69  DGGRSSAASGMNLAMALAAER--NLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKES 128
           +    +  S  NLA ALA ER  ++  +E   T       LMRL  E DG D  T    +
Sbjct: 100 ELDCLTRGSTRNLAEALAEERLAHVTEEETAVTK----VPLMRLLAESDGCDSTT----T 159

Query: 129 ENNGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
               D +CCVCM R KGAAFIPCGHT+CRVCSRE+W+NRGTCP+C+RSI ++LD++
Sbjct: 160 WLGNDPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204

[Close]
BLAST of Csa6G421620 vs. TAIR10
Match: AT3G25030.1 (AT3G25030.1 RING/U-box superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 7.7e-25
Identity = 76/193 (39.38%), Postives = 98/193 (50.78%), Query Frame = 1 

Query: 1   MERANRRRR----WTNLRQRLGLKGMGCCRGSWSPTSSTLTMIE---------GFSLSLH 60
           M+R +R  R    W +LR++L LK  G    S +   S  T I          GF LS  
Sbjct: 63  MQREHRHSRDKTAWKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNS 122

Query: 61  GSSRSQGEDGGRSSAASGMNLAMALAAERNLRNDEGGPTGGSDVK----SLMRLFEEMDG 120
           G+   +      SS    + L   LA ER L   E       +V+    SLM L EE +G
Sbjct: 123 GNVTEEA-----SSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEG 182

Query: 121 G-DWKTKRKESENN------GDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
              + +   E+E         +  CCVCM RSKGAAFIPCGHTFCR+CSRELW+ RG CP
Sbjct: 183 QMSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCP 242

[Close]
BLAST of Csa6G421620 vs. TAIR10
Match: AT4G13100.2 (AT4G13100.2 RING/U-box superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 6.1e-22
Identity = 71/202 (35.15%), Postives = 94/202 (46.53%), Query Frame = 1 

Query: 2   ERANRRRRWTNLRQRLGLK--GMGCCRGSWSPTSSTLTMIE----------GFSLSLHGS 61
           ER   +  W +LR +L LK    G    +  PT     +            GF L+   +
Sbjct: 75  ERRRDKTAWKSLRDKLRLKRTATGWISSNPIPTLDNHILTPDNDSHRFNRLGFLLTNSET 134

Query: 62  SRSQGEDGGRSSAASG----MNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGD 121
           +RS  +    +  A+     + L   LAAER                SLM L E+ DG  
Sbjct: 135 NRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPR-----------MSLMELLEDNDGHM 194

Query: 122 WK-TKRKESENNG-----------------DWMCCVCMERSKGAAFIPCGHTFCRVCSRE 170
           ++ + R E E  G                 +  CCVCM RSKGAAFIPCGHTFCR+CSRE
Sbjct: 195 YELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRE 254

[Close]
BLAST of Csa6G421620 vs. NCBI nr
Match: gi|700192764|gb|KGN47968.1| (hypothetical protein Csa_6G421620 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 1.0e-95
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 

Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120
           SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]
BLAST of Csa6G421620 vs. NCBI nr
Match: gi|659097176|ref|XP_008449482.1| (PREDICTED: uncharacterized protein LOC103491356 [Cucumis melo])

HSP 1 Score: 343.2 bits (879), Expect = 2.6e-91
Identity = 162/169 (95.86%), Postives = 164/169 (97.04%), Query Frame = 1 

Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           MERANR RRW NL+QRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQ EDGGRS
Sbjct: 1   MERANRGRRWANLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120
           SAASGMNLAMALAAERNLR+DEGGPTG SDVKSLMRLFEEMDGGDWKTKRKE ENNGDWM
Sbjct: 61  SAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]
BLAST of Csa6G421620 vs. NCBI nr
Match: gi|703153220|ref|XP_010110624.1| (hypothetical protein L484_004822 [Morus notabilis])

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-52
Identity = 105/173 (60.69%), Postives = 124/173 (71.68%), Query Frame = 1 

Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           M+ A+R  RWT+++QRLGLKGMGCC  +WSP+ STLT+IE      H  +      G   
Sbjct: 28  MDGADRIGRWTSIKQRLGLKGMGCCGATWSPSPSTLTIIETLEEEHHHRTEPVSV-GPVQ 87

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGS-DVKSLMRLFEEMDGGDWKTKRKESENNG-- 120
           +A  GMNLAMALAAERN R    GPT  S  VKSLM L EEMD  DW  +R+     G  
Sbjct: 88  AAVPGMNLAMALAAERNSRAGREGPTTASGQVKSLMTLIEEMDDVDWSNRRRRDNKEGGD 147

Query: 121 -DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
            DW+CCVCMER+KGAAFIPCGHTFCRVCSRE+W+NRGTCP+CSR I+EILDI+
Sbjct: 148 SDWLCCVCMERNKGAAFIPCGHTFCRVCSREMWVNRGTCPLCSRPIVEILDIY 199

[Close]
BLAST of Csa6G421620 vs. NCBI nr
Match: gi|641835332|gb|KDO54310.1| (hypothetical protein CISIN_1g036555mg [Citrus sinensis])

HSP 1 Score: 196.4 bits (498), Expect = 3.9e-47
Identity = 102/192 (53.12%), Postives = 120/192 (62.50%), Query Frame = 1 

Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI--------------EGFSLSLHGSSR 65
           RRR W NL+QRL LKGMGCC   WS  + TLT++               G  + +H  + 
Sbjct: 7   RRRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEEEPEEQERGTHVRMHMRNA 66

Query: 66  SQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGDW 125
           +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGDW
Sbjct: 67  AASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGDW 126

Query: 126 KTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPI 170
           + K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCPI
Sbjct: 127 QMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPI 186

[Close]
BLAST of Csa6G421620 vs. NCBI nr
Match: gi|567910675|ref|XP_006447651.1| (hypothetical protein CICLE_v10016774mg [Citrus clementina])

HSP 1 Score: 193.7 bits (491), Expect = 2.6e-46
Identity = 101/193 (52.33%), Postives = 119/193 (61.66%), Query Frame = 1 

Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI---------------EGFSLSLHGSS 65
           R R W NL+QRL LKGMGCC   WS  + TLT++                G  + +H  +
Sbjct: 7   RTRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEQEEPEEQERGTHVRMHMRN 66

Query: 66  RSQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGD 125
            +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGD
Sbjct: 67  AAASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGD 126

Query: 126 WKTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
           W+ K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCP
Sbjct: 127 WQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCP 186

The following BLAST results are available for this feature:
BLAST of Csa6G421620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IAP4_OSHVF9.8e-0635.00Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN... [more]
BLAST of Csa6G421620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEL6_CUCSA7.1e-96100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421620 PE=4 SV=1[more]
W9SUF0_9ROSA1.3e-5260.69Uncharacterized protein OS=Morus notabilis GN=L484_004822 PE=4 SV=1[more]
A0A067EKA2_CITSI2.7e-4753.13Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036555mg PE=4 SV=1[more]
V4UF21_9ROSI1.8e-4652.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016774mg PE=4 SV=1[more]
A0A061DKM7_THECC9.8e-4548.61Ubiquitin-protein ligase, putative OS=Theobroma cacao GN=TCM_002176 PE=4 SV=1[more]
BLAST of Csa6G421620 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G03965.15.3e-3447.28 RING/U-box superfamily protein[more]
AT4G22250.17.2e-3144.63 RING/U-box superfamily protein[more]
AT1G62370.16.3e-2740.91 RING/U-box superfamily protein[more]
AT3G25030.17.7e-2539.38 RING/U-box superfamily protein[more]
AT4G13100.26.1e-2235.15 RING/U-box superfamily protein[more]
BLAST of Csa6G421620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192764|gb|KGN47968.1|1.0e-95100.00hypothetical protein Csa_6G421620 [Cucumis sativus][more]
gi|659097176|ref|XP_008449482.1|2.6e-9195.86PREDICTED: uncharacterized protein LOC103491356 [Cucumis melo][more]
gi|703153220|ref|XP_010110624.1|1.8e-5260.69hypothetical protein L484_004822 [Morus notabilis][more]
gi|641835332|gb|KDO54310.1|3.9e-4753.13hypothetical protein CISIN_1g036555mg [Citrus sinensis][more]
gi|567910675|ref|XP_006447651.1|2.6e-4652.33hypothetical protein CICLE_v10016774mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU095722cucumber EST collection version 3.0transcribed_cluster
CU162363cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G421620.1Csa6G421620.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU095722CU095722transcribed_cluster
CU162363CU162363transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 121..158
score: 4.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 121..159
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 107..162
score: 1.7
NoneNo IPR availablePANTHERPTHR12183UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEINcoord: 1..169
score: 3.1
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 119..164
score: 1.0
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 111..166
score: 1.86

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G421620Cla016286Watermelon (97103) v1cuwmB445
Csa6G421620MELO3C014436Melon (DHL92) v3.5.1cumeB491
Csa6G421620Lsi11G016710Bottle gourd (USVL1VR-Ls)culsiB427
Csa6G421620MELO3C014436.2Melon (DHL92) v3.6.1cumedB471
Csa6G421620Bhi05G001806Wax gourdcuwgoB567
Csa6G421620CSPI06G22640Wild cucumber (PI 183967)cpicuB313
Csa6G421620Cucsa.185110Cucumber (Gy14) v1cgycuB282
Csa6G421620CmaCh11G019340Cucurbita maxima (Rimu)cmacuB139
Csa6G421620CmoCh19G010760Cucurbita moschata (Rifu)cmocuB510
Csa6G421620CmoCh11G020140Cucurbita moschata (Rifu)cmocuB125
Csa6G421620Cp4.1LG15g08410Cucurbita pepo (Zucchini)cpecuB247
Csa6G421620Cp4.1LG04g02670Cucurbita pepo (Zucchini)cpecuB683
Csa6G421620Carg04641Silver-seed gourdcarcuB0421
Csa6G421620Carg15708Silver-seed gourdcarcuB0561
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G421620Silver-seed gourdcarcuB0029
Csa6G421620Watermelon (97103) v2cuwmbB438
Csa6G421620Watermelon (97103) v2cuwmbB508
Csa6G421620Wax gourdcuwgoB613
Csa6G421620Cucumber (Chinese Long) v2cucuB169
Csa6G421620Cucurbita maxima (Rimu)cmacuB559
Csa6G421620Cucurbita maxima (Rimu)cmacuB519
Csa6G421620Cucurbita maxima (Rimu)cmacuB638
Csa6G421620Cucurbita moschata (Rifu)cmocuB551
Csa6G421620Cucurbita moschata (Rifu)cmocuB629
Csa6G421620Melon (DHL92) v3.5.1cumeB436
Csa6G421620Watermelon (Charleston Gray)cuwcgB417
Csa6G421620Watermelon (Charleston Gray)cuwcgB448
Csa6G421620Watermelon (97103) v1cuwmB522
Csa6G421620Cucurbita pepo (Zucchini)cpecuB751
Csa6G421620Bottle gourd (USVL1VR-Ls)culsiB422
Csa6G421620Cucumber (Gy14) v2cgybcuB281
Csa6G421620Melon (DHL92) v3.6.1cumedB417