Carg15708 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15708
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING/U-box protein, putative
Location	Cucurbita_argyrosperma_scaffold_081 : 446519 .. 447165 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTCAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTTTAAATTTGTAACATTTTCGTAAATTATTCTCTCTATGTGATTTTTGTTTTCTTTATGGGGTTTCCCCCCCCCCCCCCTTTTCCCTTCTCAAATGCTGGTAGGTTAAGGAACTAATCATAGTAAAGGAGGAGAATAGTTGA

mRNA sequence

ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTTAAGGAACTAATCATAGTAAAGGAGGAGAATAGTTGA

Coding sequence (CDS)

ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTTAAGGAACTAATCATAGTAAAGGAGGAGAATAGTTGA

Protein sequence

MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARSSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWMCCVCMERSKGAAFIPCGHTFCRVKELIIVKEENS

Homology

[Close]

BLAST of Carg15708 vs. NCBI nr
Match: XP_022953088.1 (RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022969345.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_022969346.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_023511758.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >XP_023511759.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 1.1e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRV 143

[Close]

BLAST of Carg15708 vs. NCBI nr
Match: KGN47968.1 (hypothetical protein Csa_6G421620 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 6.7e-66
Identity = 126/143 (88.11%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MER N  RRW NL+QRLGLKGMGCC GSWSPTSSTLTMIEG SLS HGSSRS  EDG RS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SA+SG+NLAMALAAERNLR DEGGPTG  DVKSLMRLFEEMDGGDWKTKRKESEN GDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRV 143

[Close]

BLAST of Carg15708 vs. NCBI nr
Match: XP_023531397.1 (uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398.1 uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 123/144 (85.42%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60
           MER N G+RWANLKQRLGL KGMGCCGGSWS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 62  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 121

Query: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSLMRLFEE+DGGDWKT+RKESEN GDW
Sbjct: 122 SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFEEIDGGDWKTRRKESENNGDW 181

Query: 121 MCCVCMERSKGAAFIPCGHTFCRV 144
           +CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 182 LCCVCMERSKGAAFIPCGHTFCRV 203

[Close]

BLAST of Carg15708 vs. NCBI nr
Match: XP_022988657.1 (RING finger protein 141-like [Cucurbita maxima] >XP_022988658.1 RING finger protein 141-like [Cucurbita maxima] >XP_022988659.1 RING finger protein 141-like [Cucurbita maxima] >XP_022988660.1 RING finger protein 141-like [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 4.5e-62
Identity = 122/144 (84.72%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60
           MER N G+RWANLKQRLGL KGMGCCGG+WS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGAWSSTSSTLTMIDGIGLSRHGSSRSHRDDGIR 60

Query: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSLMRLFEE+DGGDWKT+RKESEN GDW
Sbjct: 61  SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFEEIDGGDWKTRRKESENNGDW 120

Query: 121 MCCVCMERSKGAAFIPCGHTFCRV 144
           +CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 LCCVCMERSKGAAFIPCGHTFCRV 142

[Close]

BLAST of Carg15708 vs. NCBI nr
Match: XP_022930871.1 (uncharacterized protein LOC111437226 [Cucurbita moschata] >XP_022930872.1 uncharacterized protein LOC111437226 [Cucurbita moschata] >XP_022930873.1 uncharacterized protein LOC111437226 [Cucurbita moschata])

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-61
Identity = 121/144 (84.03%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60
           MER N G+RWANLKQRLGL KG+GCCGGSWS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 62  MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 121

Query: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSL+RLFEE+DGGDWKT+RKESEN GDW
Sbjct: 122 SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLVRLFEEIDGGDWKTRRKESENNGDW 181

Query: 121 MCCVCMERSKGAAFIPCGHTFCRV 144
           +CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 182 LCCVCMERSKGAAFIPCGHTFCRV 203

[Close]

BLAST of Carg15708 vs. TAIR10
Match: AT4G03965.1 (RING/U-box superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-18
Identity = 65/151 (43.05%), Postives = 84/151 (55.63%), Query Frame = 0


Query: 8   RRWANLKQRLGLKGMGCCGGSWS--PTSSTLTMIEGLSLSRHGSSRSHREDGARSSASSG 67
           RR   LK+RLG K +GCCG +W    TS+T    +    +R  S   H         + G
Sbjct: 37  RRKRTLKERLGFKRIGCCGPTWGLRLTSNTGEDDDEPFENRLVSGSDH----VTGPLNQG 96

Query: 68  VNLAMALAAERNLRTDEGGPTGA-GDVK-SLMRLFEE------MDGGDWKTKRKESENT- 127
           +NLA ALAAERN RT+E   +G+   +K SLMRL EE      ++  + +     + +T 
Sbjct: 97  MNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEETAERVVVEENETERVTASASSTV 156

Query: 128 ----GDWMCCVCMERSKGAAFIPCGHTFCRV 144
                D +CCVCM R KGAAFIPCGHTFCRV
Sbjct: 157 RGVNNDSVCCVCMGRKKGAAFIPCGHTFCRV 183

[Close]

BLAST of Carg15708 vs. TAIR10
Match: AT4G22250.1 (RING/U-box superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-15
Identity = 70/175 (40.00%), Postives = 80/175 (45.71%), Query Frame = 0


Query: 1   MERQNGG----RRWANLKQRLGLKGMGCCGGSW-----------SPTS-----STLTMIE 60
           + RQ  G    RR   LK+RL  K +GCCG +W           SPTS       L +  
Sbjct: 27  LRRQMSGHDLTRRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHSPTSRDDEIEELQIET 86

Query: 61  GLSL-SRHGSSRSHREDGARSSASSGVNLAMALAAERNLR--TDEGGPTGAGDVKSLMRL 120
           GL L S HGS              +G+NLA AL AER  R  + E          SLMRL
Sbjct: 87  GLVLESDHGS-------------GTGMNLATALEAERYNRGESTEAEADMTPRRVSLMRL 146

Query: 121 FEEMDGGDWKTKRKESE---------NTGDWMCCVCMERSKGAAFIPCGHTFCRV 144
            EE          KE+E            D +CCVCM R KGAAFIPCGHTFCRV
Sbjct: 147 LEETAEKIVDDDGKETEILTASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTFCRV 188

[Close]

BLAST of Carg15708 vs. TAIR10
Match: AT1G62370.1 (RING/U-box superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-11
Identity = 58/156 (37.18%), Postives = 64/156 (41.03%), Query Frame = 0


Query: 5   NGGRR----WANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 64
           NGG R    W  LKQRL    +GCCG    P +  L   E                    
Sbjct: 32  NGGDRTMSKWTTLKQRLRFDWVGCCG---KPLTLRLRQAETPIXXXXXXXXXXXXXXVVD 91

Query: 65  SASSGV-------------NLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWK 124
            +  G              NLA ALA ER     E     A     LMRL  E DG D  
Sbjct: 92  FSDPGTGTELDCLTRGSTRNLAEALAEERLAHVTE--EETAVTKVPLMRLLAESDGCDST 151

Query: 125 TKRKESENTGDWMCCVCMERSKGAAFIPCGHTFCRV 144
           T    +    D +CCVCM R KGAAFIPCGHT+CRV
Sbjct: 152 T----TWLGNDPLCCVCMGREKGAAFIPCGHTYCRV 178

[Close]

BLAST of Carg15708 vs. TAIR10
Match: AT3G25030.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-10
Identity = 53/149 (35.57%), Postives = 68/149 (45.64%), Query Frame = 0


Query: 10  WANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHG----SSRSHREDGARSSASSG 69
           W +L+++L LK  G    S +   S  T I       H      S S       SS    
Sbjct: 76  WKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNSGNVTEEASSVEGR 135

Query: 70  VNLAMALAAERNLRTDEGGPTGAGDVK----SLMRLFEEMDGG------DWKTKRKESEN 129
           + L   LA ER L   E       +V+    SLM L EE +G       D + + + +  
Sbjct: 136 IRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQMSFVSVDGEAEEEVAAV 195

Query: 130 T-GDWMCCVCMERSKGAAFIPCGHTFCRV 144
           T  +  CCVCM RSKGAAFIPCGHTFCR+
Sbjct: 196 TAAEISCCVCMVRSKGAAFIPCGHTFCRL 224

[Close]

BLAST of Carg15708 vs. TAIR10
Match: AT4G13100.2 (RING/U-box superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-08
Identity = 54/168 (32.14%), Postives = 74/168 (44.05%), Query Frame = 0


Query: 2   ERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHR-----ED 61
           ER+     W +L+ +L LK        W  ++   T+   +    + S R +R      +
Sbjct: 75  ERRRDKTAWKSLRDKLRLKRTAT---GWISSNPIPTLDNHILTPDNDSHRFNRLGFLLTN 134

Query: 62  GARSSASSGVNLAMALAAERNLRTDEGGPTGA---GDVKSLMRLFEEMDGGDWK-TKRKE 121
              + +S  V+ A   AAER  R   G    A       SLM L E+ DG  ++ + R E
Sbjct: 135 SETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPRMSLMELLEDNDGHMYELSARDE 194

Query: 122 SENTG-----------------DWMCCVCMERSKGAAFIPCGHTFCRV 144
            E  G                 +  CCVCM RSKGAAFIPCGHTFCR+
Sbjct: 195 VEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRL 239

[Close]

BLAST of Carg15708 vs. TrEMBL
Match: tr|A0A0A0KEL6|A0A0A0KEL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 4.4e-66
Identity = 126/143 (88.11%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MER N  RRW NL+QRLGLKGMGCC GSWSPTSSTLTMIEG SLS HGSSRS  EDG RS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SA+SG+NLAMALAAERNLR DEGGPTG  DVKSLMRLFEEMDGGDWKTKRKESEN GDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRV 143

[Close]

BLAST of Carg15708 vs. TrEMBL
Match: tr|W9SUF0|W9SUF0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004822 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.3e-37
Identity = 86/143 (60.14%), Postives = 98/143 (68.53%), Query Frame = 0


Query: 9   RWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHRED----GARSSASS 68
           RW ++KQRLGLKGMGCCG +WSP+ STLT+IE L    H     HR +    G   +A  
Sbjct: 36  RWTSIKQRLGLKGMGCCGATWSPSPSTLTIIETLEEEHH-----HRTEPVSVGPVQAAVP 95

Query: 69  GVNLAMALAAERNLRTDEGGPTGA-GDVKSLMRLFEEMDGGDWKTKRKESENTG---DWM 128
           G+NLAMALAAERN R    GPT A G VKSLM L EEMD  DW  +R+     G   DW+
Sbjct: 96  GMNLAMALAAERNSRAGREGPTTASGQVKSLMTLIEEMDDVDWSNRRRRDNKEGGDSDWL 155

Query: 129 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMER+KGAAFIPCGHTFCRV
Sbjct: 156 CCVCMERNKGAAFIPCGHTFCRV 173

[Close]

BLAST of Carg15708 vs. TrEMBL
Match: tr|A0A2N9ETE4|A0A2N9ETE4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5843 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.0e-35
Identity = 84/141 (59.57%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 7   GRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHR--EDGARSSASS 66
           GRRW NLKQRLG KGMGCCG +WSPTSSTLT++E                 +     A +
Sbjct: 3   GRRWTNLKQRLGFKGMGCCGATWSPTSSTLTILEXXXXXXXXXXXXXXLVSNVNHVQAPT 62

Query: 67  GVNLAMALAAERNLRT-DEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENT-GDWMCC 126
           G+NLAMALAAERN R  + G PT    VK+LMRL EE DG DW+ KR+  +    DW+CC
Sbjct: 63  GMNLAMALAAERNSRDGNVGHPT---QVKTLMRLIEETDGVDWRKKRRRDKGVDSDWVCC 122

Query: 127 VCMERSKGAAFIPCGHTFCRV 144
           VCMERSKGAAFIPCGHTFCRV
Sbjct: 123 VCMERSKGAAFIPCGHTFCRV 140

[Close]

BLAST of Carg15708 vs. TrEMBL
Match: tr|A0A2I4GA70|A0A2I4GA70_9ROSI (uncharacterized protein LOC109006075 isoform X1 OS=Juglans regia OX=51240 GN=LOC109006075 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 83/147 (56.46%), Postives = 100/147 (68.03%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           M+  + GRRW +LK+RLG KGMGCCG    PTSS+ + +E L  + H             
Sbjct: 94  MDSGDPGRRWTSLKERLGFKGMGCCGSRRRPTSSSFSTLETLQENPH----------TAP 153

Query: 61  SASSGVNLAMALAAERNLRTD-EGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTG-- 120
             SSG+NLAMALAAERN R + + GP  A +VK+LMRL EE DG DW+ KR+  +N G  
Sbjct: 154 PLSSGMNLAMALAAERNSREEKDEGP--ATEVKTLMRLIEETDGVDWRKKRRR-DNKGAD 213

Query: 121 -DWMCCVCMERSKGAAFIPCGHTFCRV 144
            DW+CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 214 TDWVCCVCMERSKGAAFIPCGHTFCRV 227

[Close]

BLAST of Carg15708 vs. TrEMBL
Match: tr|A0A2I4GA66|A0A2I4GA66_9ROSI (uncharacterized protein LOC109006075 isoform X2 OS=Juglans regia OX=51240 GN=LOC109006075 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 83/147 (56.46%), Postives = 100/147 (68.03%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           M+  + GRRW +LK+RLG KGMGCCG    PTSS+ + +E L  + H             
Sbjct: 93  MDSGDPGRRWTSLKERLGFKGMGCCGSRRRPTSSSFSTLETLQENPH----------TAP 152

Query: 61  SASSGVNLAMALAAERNLRTD-EGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTG-- 120
             SSG+NLAMALAAERN R + + GP  A +VK+LMRL EE DG DW+ KR+  +N G  
Sbjct: 153 PLSSGMNLAMALAAERNSREEKDEGP--ATEVKTLMRLIEETDGVDWRKKRRR-DNKGAD 212

Query: 121 -DWMCCVCMERSKGAAFIPCGHTFCRV 144
            DW+CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 213 TDWVCCVCMERSKGAAFIPCGHTFCRV 226

The following BLAST results are available for this feature:

BLAST of Carg15708 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953088.1	1.1e-76	100.00	RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding ...	[more]
KGN47968.1	6.7e-66	88.11	hypothetical protein Csa_6G421620 [Cucumis sativus]	[more]
XP_023531397.1	1.5e-62	85.42	uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398....	[more]
XP_022988657.1	4.5e-62	84.72	RING finger protein 141-like [Cucurbita maxima] >XP_022988658.1 RING finger prot...	[more]
XP_022930871.1	1.3e-61	84.03	uncharacterized protein LOC111437226 [Cucurbita moschata] >XP_022930872.1 unchar...	[more]

BLAST of Carg15708 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03965.1	2.8e-18	43.05	RING/U-box superfamily protein	[more]
AT4G22250.1	6.5e-15	40.00	RING/U-box superfamily protein	[more]
AT1G62370.1	2.6e-11	37.18	RING/U-box superfamily protein	[more]
AT3G25030.1	8.2e-10	35.57	RING/U-box superfamily protein	[more]
AT4G13100.2	7.7e-08	32.14	RING/U-box superfamily protein	[more]

BLAST of Carg15708 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15708 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KEL6\|A0A0A0KEL6_CUCSA	4.4e-66	88.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 PE=4 SV=1	[more]
tr\|W9SUF0\|W9SUF0_9ROSA	3.3e-37	60.14	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004822 PE=4 SV=1	[more]
tr\|A0A2N9ETE4\|A0A2N9ETE4_FAGSY	9.0e-35	59.57	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5843 PE=4 SV=1	[more]
tr\|A0A2I4GA70\|A0A2I4GA70_9ROSI	1.1e-32	56.46	uncharacterized protein LOC109006075 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4GA66\|A0A2I4GA66_9ROSI	1.1e-32	56.46	uncharacterized protein LOC109006075 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15708-RA	Carg15708-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 101..143 e-value: 4.4E-8 score: 34.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..64
None	No IPR available	PANTHER	PTHR12183:SF22	SUBFAMILY NOT NAMED	coord: 8..143
None	No IPR available	PANTHER	PTHR12183	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	coord: 8..143
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 112..142

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15708	Cla016286	Watermelon (97103) v1	carwmB0527
Carg15708	Csa6G421620	Cucumber (Chinese Long) v2	carcuB0561
Carg15708	MELO3C014436	Melon (DHL92) v3.5.1	carmeB0539
Carg15708	CSPI06G22640	Wild cucumber (PI 183967)	carcpiB0567
Carg15708	Cucsa.185110	Cucumber (Gy14) v1	carcgyB0611
Carg15708	CmaCh19G010470	Cucurbita maxima (Rimu)	carcmaB0745
Carg15708	CmaCh11G019340	Cucurbita maxima (Rimu)	carcmaB0744
Carg15708	CmoCh19G010760	Cucurbita moschata (Rifu)	carcmoB0723
Carg15708	CmoCh11G020140	Cucurbita moschata (Rifu)	carcmoB0722
Carg15708	Lsi11G016710	Bottle gourd (USVL1VR-Ls)	carlsiB484
Carg15708	Cp4.1LG15g08410	Cucurbita pepo (Zucchini)	carcpeB0751
Carg15708	Cp4.1LG04g02670	Cucurbita pepo (Zucchini)	carcpeB0754
Carg15708	MELO3C014436.2	Melon (DHL92) v3.6.1	carmedB0544
Carg15708	CsaV3_6G037770	Cucumber (Chinese Long) v3	carcucB0569
Carg15708	Bhi05G001806	Wax gourd	carwgoB0641

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15708	Carg04641	Silver-seed gourd	carcarB415

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15708	Melon (DHL92) v3.5.1	carmeB0536
Carg15708	Melon (DHL92) v3.6.1	carmedB0541
Carg15708	Watermelon (Charleston Gray)	carwcgB0514
Carg15708	Watermelon (Charleston Gray)	carwcgB0516
Carg15708	Watermelon (Charleston Gray)	carwcgB0517
Carg15708	Watermelon (97103) v1	carwmB0530
Carg15708	Watermelon (97103) v2	carwmbB0556
Carg15708	Watermelon (97103) v2	carwmbB0558
Carg15708	Wax gourd	carwgoB0643
Carg15708	Silver-seed gourd	carcarB033
Carg15708	Cucumber (Gy14) v2	carcgybB0538
Carg15708	Cucumber (Gy14) v2	carcgybB0539
Carg15708	Cucurbita maxima (Rimu)	carcmaB0746
Carg15708	Cucurbita maxima (Rimu)	carcmaB0747
Carg15708	Cucurbita moschata (Rifu)	carcmoB0724
Carg15708	Cucurbita moschata (Rifu)	carcmoB0725
Carg15708	Cucurbita pepo (Zucchini)	carcpeB0752
Carg15708	Cucurbita pepo (Zucchini)	carcpeB0755
Carg15708	Wild cucumber (PI 183967)	carcpiB0568
Carg15708	Cucumber (Chinese Long) v2	carcuB0562
Carg15708	Cucumber (Chinese Long) v3	carcucB0570
Carg15708	Bottle gourd (USVL1VR-Ls)	carlsiB483