Cucsa.148180 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.148180
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transmembrane protein, putative
Location	scaffold01107 : 371820 .. 372248 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAGAGATGGGGTTGATTCGGTTCATTGAGACTGATCCTAATTTCTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTATATATATATATATATATATAAACATATTCTTTTGTTTTTTGGAGGAAATTTTAG

mRNA sequence

AGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAGAGATGGGGAAATTTTAG

Coding sequence (CDS)

AGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAGAGATGGGGAAATTTTAG

Protein sequence

LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKEMGKF*

Homology

[Close]

BLAST of Cucsa.148180 vs. TrEMBL
Match: A0A0A0K3N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.7e-28
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 60
          LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI
Sbjct: 31 LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 90

Query: 61 RVTRKEMG 69
          RVTRK  G
Sbjct: 91 RVTRKRDG 98

[Close]

BLAST of Cucsa.148180 vs. TrEMBL
Match: W9R8T9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008734 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.1e-17
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 2   PLSVAPESSE-KGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 61
           P+S A E SE K   +    AEAP IRRLGKHH DKSMAGGGVIIGGLVTA+FAAVFCYI
Sbjct: 44  PVSSAEERSEGKEASDDENEAEAPAIRRLGKHHSDKSMAGGGVIIGGLVTAIFAAVFCYI 103

Query: 62  RVTRK 66
           RVTRK
Sbjct: 104 RVTRK 108

[Close]

BLAST of Cucsa.148180 vs. TrEMBL
Match: A0A0B2SAC2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_017231 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-16
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 6   APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 65
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

[Close]

BLAST of Cucsa.148180 vs. TrEMBL
Match: I1KF92_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G301200 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-16
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 6   APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 65
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

[Close]

BLAST of Cucsa.148180 vs. TrEMBL
Match: A0A067DDL6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038247mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-15
Identity = 50/70 (71.43%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 2   PLSVAPESSEKGTREGSEVAEAPEIRRLGKHH---GDKSMAGGGVIIGGLVTAVFAAVFC 61
           P S A ESS        E AEAPEIRRLGKHH    DKS+AGGGVIIGGLVTA+FAAVFC
Sbjct: 44  PASSASESSYY--HNDPEAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFC 103

Query: 62  YIRVTRKEMG 69
           YIRVTRK  G
Sbjct: 104 YIRVTRKRHG 111

[Close]

BLAST of Cucsa.148180 vs. TAIR10
Match: AT3G09280.1 (AT3G09280.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 4.2e-09
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 7  PESSEKGTREG-SEVAEAPEIRRL------GKHHG--DKSMAGGGVIIGGLVTAVFAAVF 66
          P + + G  E   E AEAPE+  L      G HH   ++S+AGGGVI+GGL T     VF
Sbjct: 28 PATRKLGRHEWPGEEAEAPEVSHLEETVRRGHHHSTVERSVAGGGVILGGLATTFLVVVF 87

[Close]

BLAST of Cucsa.148180 vs. NCBI nr
Match: gi|700188326|gb|KGN43559.1| (hypothetical protein Csa_7G045480 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-28
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 60
          LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI
Sbjct: 31 LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 90

Query: 61 RVTRKEMG 69
          RVTRK  G
Sbjct: 91 RVTRKRDG 98

[Close]

BLAST of Cucsa.148180 vs. NCBI nr
Match: gi|703094258|ref|XP_010095197.1| (hypothetical protein L484_008734 [Morus notabilis])

HSP 1 Score: 94.4 bits (233), Expect = 8.8e-17
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 2   PLSVAPESSE-KGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 61
           P+S A E SE K   +    AEAP IRRLGKHH DKSMAGGGVIIGGLVTA+FAAVFCYI
Sbjct: 44  PVSSAEERSEGKEASDDENEAEAPAIRRLGKHHSDKSMAGGGVIIGGLVTAIFAAVFCYI 103

Query: 62  RVTRK 66
           RVTRK
Sbjct: 104 RVTRK 108

[Close]

BLAST of Cucsa.148180 vs. NCBI nr
Match: gi|947107688|gb|KRH56071.1| (hypothetical protein GLYMA_06G301200 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-16
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 6   APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 65
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

[Close]

BLAST of Cucsa.148180 vs. NCBI nr
Match: gi|734421009|gb|KHN41187.1| (hypothetical protein glysoja_017231 [Glycine soja])

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-16
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 6   APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 65
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

[Close]

BLAST of Cucsa.148180 vs. NCBI nr
Match: gi|641809283|gb|KDO36691.1| (hypothetical protein CISIN_1g038247mg [Citrus sinensis])

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-15
Identity = 50/70 (71.43%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 2   PLSVAPESSEKGTREGSEVAEAPEIRRLGKHH---GDKSMAGGGVIIGGLVTAVFAAVFC 61
           P S A ESS        E AEAPEIRRLGKHH    DKS+AGGGVIIGGLVTA+FAAVFC
Sbjct: 44  PASSASESSYY--HNDPEAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFC 103

Query: 62  YIRVTRKEMG 69
           YIRVTRK  G
Sbjct: 104 YIRVTRKRHG 111

The following BLAST results are available for this feature:

BLAST of Cucsa.148180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3N0_CUCSA	2.7e-28	97.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1	[more]
W9R8T9_9ROSA	6.1e-17	75.38	Uncharacterized protein OS=Morus notabilis GN=L484_008734 PE=4 SV=1	[more]
A0A0B2SAC2_GLYSO	3.0e-16	72.13	Uncharacterized protein OS=Glycine soja GN=glysoja_017231 PE=4 SV=1	[more]
I1KF92_SOYBN	3.0e-16	72.13	Uncharacterized protein OS=Glycine max GN=GLYMA_06G301200 PE=4 SV=1	[more]
A0A067DDL6_CITSI	2.0e-15	71.43	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038247mg PE=4 SV=1	[more]

BLAST of Cucsa.148180 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09280.1	4.2e-09	48.53	unknown protein	[more]

BLAST of Cucsa.148180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188326\|gb\|KGN43559.1\|	3.8e-28	97.06	hypothetical protein Csa_7G045480 [Cucumis sativus]	[more]
gi\|703094258\|ref\|XP_010095197.1\|	8.8e-17	75.38	hypothetical protein L484_008734 [Morus notabilis]	[more]
gi\|947107688\|gb\|KRH56071.1\|	4.4e-16	72.13	hypothetical protein GLYMA_06G301200 [Glycine max]	[more]
gi\|734421009\|gb\|KHN41187.1\|	4.4e-16	72.13	hypothetical protein glysoja_017231 [Glycine soja]	[more]
gi\|641809283\|gb\|KDO36691.1\|	2.8e-15	71.43	hypothetical protein CISIN_1g038247mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.148180.1	Cucsa.148180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	FAMILY NOT NAMED	coord: 7..65 score: 9.8
None	No IPR available	PANTHER	PTHR34558:SF2	SUBFAMILY NOT NAMED	coord: 7..65 score: 9.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.148180	Cla007705	Watermelon (97103) v1	cgywmB262
Cucsa.148180	Csa7G045480	Cucumber (Chinese Long) v2	cgycuB215
Cucsa.148180	ClCG02G001520	Watermelon (Charleston Gray)	cgywcgB248
Cucsa.148180	CSPI07G04070	Wild cucumber (PI 183967)	cgycpiB220
Cucsa.148180	CmaCh19G009460	Cucurbita maxima (Rimu)	cgycmaB0407
Cucsa.148180	CmoCh02G001450	Cucurbita moschata (Rifu)	cgycmoB0409
Cucsa.148180	CmoCh19G009760	Cucurbita moschata (Rifu)	cgycmoB0407
Cucsa.148180	Lsi11G014920	Bottle gourd (USVL1VR-Ls)	cgylsiB237
Cucsa.148180	Cp4.1LG15g07760	Cucurbita pepo (Zucchini)	cgycpeB0392
Cucsa.148180	Cp4.1LG05g14540	Cucurbita pepo (Zucchini)	cgycpeB0396
Cucsa.148180	CsaV3_7G003930	Cucumber (Chinese Long) v3	cgycucB226
Cucsa.148180	Cla97C02G027970	Watermelon (97103) v2	cgywmbB248
Cucsa.148180	Bhi05G001137	Wax gourd	cgywgoB287
Cucsa.148180	Carg13550	Silver-seed gourd	carcgyB0035
Cucsa.148180	Carg19197	Silver-seed gourd	carcgyB0997

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.148180	Watermelon (97103) v2	cgywmbB247
Cucsa.148180	Watermelon (97103) v2	cgywmbB251
Cucsa.148180	Wax gourd	cgywgoB291
Cucsa.148180	Wax gourd	cgywgoB289
Cucsa.148180	Cucumber (Gy14) v1	cgycgyB005
Cucsa.148180	Cucurbita maxima (Rimu)	cgycmaB0405
Cucsa.148180	Cucurbita maxima (Rimu)	cgycmaB0406
Cucsa.148180	Cucurbita maxima (Rimu)	cgycmaB0408
Cucsa.148180	Cucurbita maxima (Rimu)	cgycmaB0409
Cucsa.148180	Cucurbita moschata (Rifu)	cgycmoB0404
Cucsa.148180	Cucurbita moschata (Rifu)	cgycmoB0405
Cucsa.148180	Cucurbita moschata (Rifu)	cgycmoB0408
Cucsa.148180	Wild cucumber (PI 183967)	cgycpiB219
Cucsa.148180	Melon (DHL92) v3.5.1	cgymeB248
Cucsa.148180	Melon (DHL92) v3.5.1	cgymeB249
Cucsa.148180	Watermelon (Charleston Gray)	cgywcgB247
Cucsa.148180	Watermelon (97103) v1	cgywmB259
Cucsa.148180	Watermelon (97103) v1	cgywmB257
Cucsa.148180	Cucurbita pepo (Zucchini)	cgycpeB0393
Cucsa.148180	Cucurbita pepo (Zucchini)	cgycpeB0394
Cucsa.148180	Cucurbita pepo (Zucchini)	cgycpeB0395
Cucsa.148180	Bottle gourd (USVL1VR-Ls)	cgylsiB238
Cucsa.148180	Melon (DHL92) v3.6.1	cgymedB245
Cucsa.148180	Melon (DHL92) v3.6.1	cgymedB246
Cucsa.148180	Melon (DHL92) v3.6.1	cgymedB247
Cucsa.148180	Silver-seed gourd	carcgyB0717
Cucsa.148180	Silver-seed gourd	carcgyB0810
Cucsa.148180	Cucumber (Chinese Long) v3	cgycucB222
Cucsa.148180	Cucumber (Chinese Long) v3	cgycucB225