Cla97C02G027970 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G027970
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Basic helix-loop-helix DNA-binding superfamily protein, putative
Location	Cla97Chr02 : 1526198 .. 1526488 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTGTCTGCGGCGCCGGAGCCACTAGAGACCGGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGA

mRNA sequence

ATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTGTCTGCGGCGCCGGAGCCACTAGAGACCGGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGA

Coding sequence (CDS)

ATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTGTCTGCGGCGCCGGAGCCACTAGAGACCGGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGA

Protein sequence

MAKLWFLCLIVAEILLIQAMASDLLLSAAPEPLETGTREGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH

Homology

[Close]

BLAST of Cla97C02G027970 vs. NCBI nr
Match: KGN43559.1 (hypothetical protein Csa_7G045480 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.6e-28
Identity = 75/103 (72.82%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 1   MAKLWFL-CLIVAEILLIQAM------ASDLLLSAAPEPLETGTREGYGVAEAPEIRRLG 60
           MAK+  L CLIV EI LIQA+       ++L LS APE  E GTREG  VAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 97
           KHHGD S+AGGGVIIGGLVTA+FAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of Cla97C02G027970 vs. NCBI nr
Match: CAN69916.1 (hypothetical protein VITISV_044272 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-16
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MAKLWFLCLIVAEILLIQAMAS-------DLLLSAAPEPLETGTREGYGVAEAPEIRRLG 60
          M +L  +CL++AEIL++QA+A          ++  A +P   G  E   VAEAP  RRLG
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLEVAEAPANRRLG 60

Query: 61 KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKK 90
          KHH D S+AGGGVIIGGL TAIFAAVFCYIR+T+++
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRRR 96

[Close]

BLAST of Cla97C02G027970 vs. NCBI nr
Match: POE68717.1 (hypothetical protein CFP56_17597 [Quercus suber])

HSP 1 Score: 93.6 bits (231), Expect = 3.9e-16
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 11  VAEILLIQAMASDLLLSAAPEPLETGTREGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGG 70
           V  + ++  +A   + S A  P   G +E   VAEAPEIRRLGKHH D SVAGGGVIIGG
Sbjct: 123 VGTLRVVARLADQPVSSVAESP--EGNKEYSNVAEAPEIRRLGKHHSDKSVAGGGVIIGG 182

Query: 71  LVTAIFAAVFCYIRVTKKKDGV 93
           LVTAIFAAVFCYIRVT+K+  V
Sbjct: 183 LVTAIFAAVFCYIRVTRKRGDV 202

[Close]

BLAST of Cla97C02G027970 vs. NCBI nr
Match: XP_023886160.1 (uncharacterized protein LOC111998295 [Quercus suber])

HSP 1 Score: 93.6 bits (231), Expect = 3.9e-16
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 11  VAEILLIQAMASDLLLSAAPEPLETGTREGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGG 70
           V  + ++  +A   + S A  P   G +E   VAEAPEIRRLGKHH D SVAGGGVIIGG
Sbjct: 42  VGTLRVVARLADQPVSSVAESP--EGNKEYSNVAEAPEIRRLGKHHSDKSVAGGGVIIGG 101

Query: 71  LVTAIFAAVFCYIRVTKKKDGV 93
           LVTAIFAAVFCYIRVT+K+  V
Sbjct: 102 LVTAIFAAVFCYIRVTRKRGDV 121

[Close]

BLAST of Cla97C02G027970 vs. NCBI nr
Match: KDP32228.1 (hypothetical protein JCGZ_13835 [Jatropha curcas])

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 3  KLWFLCLIVAEILLIQAMASD---LLLSAAPEPLETGTREGYGVAEAPEIRRLGKHHGDD 62
          +L   CLI+A IL++QA A +      S A +P+   +   +  AEAPEIRRLGKHH  D
Sbjct: 5  RLVISCLILAGILIVQATADESEKKSPSVADQPV--ASSHEWEEAEAPEIRRLGKHHSSD 64

Query: 63 -SVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSV 96
           SVAGGGVIIGGLVTAIFAAVFCYIRVT+KK   D V
Sbjct: 65 KSVAGGGVIIGGLVTAIFAAVFCYIRVTRKKGSDDLV 99

[Close]

BLAST of Cla97C02G027970 vs. TrEMBL
Match: tr|A0A0A0K3N0|A0A0A0K3N0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 75/103 (72.82%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 1   MAKLWFL-CLIVAEILLIQAM------ASDLLLSAAPEPLETGTREGYGVAEAPEIRRLG 60
           MAK+  L CLIV EI LIQA+       ++L LS APE  E GTREG  VAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 97
           KHHGD S+AGGGVIIGGLVTA+FAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of Cla97C02G027970 vs. TrEMBL
Match: tr|A0A2N9IXN3|A0A2N9IXN3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 57/118 (48.31%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 1   MAKLWFLCLIVAEILLIQAMAS---------------------DLLLSAAPEPLET---- 60
           M +L   CLI+AEIL++QAMA                       ++   A +P+ +    
Sbjct: 1   MGRLGLFCLILAEILVVQAMAEKSEGSELNPFGLKAQNKNGALGVVARVADQPVSSIAES 60

Query: 61  -GTREGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGV 93
             ++E   VAEAP IRR+GKHH D S+AGGGVIIGGL TAIFA VFCYIRVT+K+DGV
Sbjct: 61  PESKEYSDVAEAPVIRRMGKHHSDKSLAGGGVIIGGLATAIFAVVFCYIRVTRKRDGV 118

[Close]

BLAST of Cla97C02G027970 vs. TrEMBL
Match: tr|A5BAN6|A5BAN6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MAKLWFLCLIVAEILLIQAMAS-------DLLLSAAPEPLETGTREGYGVAEAPEIRRLG 60
          M +L  +CL++AEIL++QA+A          ++  A +P   G  E   VAEAP  RRLG
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLEVAEAPANRRLG 60

Query: 61 KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKK 90
          KHH D S+AGGGVIIGGL TAIFAAVFCYIR+T+++
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRRR 96

[Close]

BLAST of Cla97C02G027970 vs. TrEMBL
Match: tr|A0A2P4IJK3|A0A2P4IJK3_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_17597 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 11  VAEILLIQAMASDLLLSAAPEPLETGTREGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGG 70
           V  + ++  +A   + S A  P   G +E   VAEAPEIRRLGKHH D SVAGGGVIIGG
Sbjct: 123 VGTLRVVARLADQPVSSVAESP--EGNKEYSNVAEAPEIRRLGKHHSDKSVAGGGVIIGG 182

Query: 71  LVTAIFAAVFCYIRVTKKKDGV 93
           LVTAIFAAVFCYIRVT+K+  V
Sbjct: 183 LVTAIFAAVFCYIRVTRKRGDV 202

[Close]

BLAST of Cla97C02G027970 vs. TrEMBL
Match: tr|F6GXP2|F6GXP2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0134g00170 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.6e-16
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MAKLWFLCLIVAEILLIQAMAS-------DLLLSAAPEPLETGTREGYGVAEAPEIRRLG 60
          M +L  +CL++AEIL++QA+A          ++  A +P   G  E   VAEAP  RRLG
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGVDPLGSVVRVADQPSPGGGGESLEVAEAPANRRLG 60

Query: 61 KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKK 90
          KHH D S+AGGGVIIGGL TAIFAAVFCYIR+T ++
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITGRR 96

The following BLAST results are available for this feature:

BLAST of Cla97C02G027970 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43559.1	2.6e-28	72.82	hypothetical protein Csa_7G045480 [Cucumis sativus]	[more]
CAN69916.1	3.0e-16	54.17	hypothetical protein VITISV_044272 [Vitis vinifera]	[more]
POE68717.1	3.9e-16	62.20	hypothetical protein CFP56_17597 [Quercus suber]	[more]
XP_023886160.1	3.9e-16	62.20	uncharacterized protein LOC111998295 [Quercus suber]	[more]
KDP32228.1	1.1e-15	59.79	hypothetical protein JCGZ_13835 [Jatropha curcas]	[more]

BLAST of Cla97C02G027970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3N0\|A0A0A0K3N0_CUCSA	1.7e-28	72.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]
tr\|A0A2N9IXN3\|A0A2N9IXN3_FAGSY	1.5e-16	48.31	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1	[more]
tr\|A5BAN6\|A5BAN6_VITVI	2.0e-16	54.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1	[more]
tr\|A0A2P4IJK3\|A0A2P4IJK3_QUESU	2.6e-16	62.20	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_17597 PE=4 SV=1	[more]
tr\|F6GXP2\|F6GXP2_VITVI	7.6e-16	54.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0134g00170 PE=4 SV=...	[more]

BLAST of Cla97C02G027970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G027970 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G027970.1	Cla97C02G027970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	FAMILY NOT NAMED	coord: 1..92
None	No IPR available	PANTHER	PTHR34558:SF4	F3L24.15 PROTEIN	coord: 1..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G027970	Cla007705	Watermelon (97103) v1	wmwmbB324
Cla97C02G027970	Csa7G045480	Cucumber (Chinese Long) v2	cuwmbB529
Cla97C02G027970	ClCG02G001520	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G027970	CSPI07G04070	Wild cucumber (PI 183967)	cpiwmbB553
Cla97C02G027970	Cucsa.148180	Cucumber (Gy14) v1	cgywmbB248
Cla97C02G027970	CmaCh19G009460	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G027970	CmoCh19G009760	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G027970	Lsi11G014920	Bottle gourd (USVL1VR-Ls)	lsiwmbB086
Cla97C02G027970	Carg19197	Silver-seed gourd	carwmbB0915
Cla97C02G027970	CsaV3_7G003930	Cucumber (Chinese Long) v3	cucwmbB549
Cla97C02G027970	Bhi05G001137	Wax gourd	wgowmbB241

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G027970	Watermelon (97103) v2	wmbwmbB096
Cla97C02G027970	Silver-seed gourd	carwmbB0027
Cla97C02G027970	Silver-seed gourd	carwmbB0348
Cla97C02G027970	Silver-seed gourd	carwmbB0752
Cla97C02G027970	Silver-seed gourd	carwmbB0974
Cla97C02G027970	Cucumber (Gy14) v2	cgybwmbB502
Cla97C02G027970	Cucurbita maxima (Rimu)	cmawmbB105
Cla97C02G027970	Cucurbita maxima (Rimu)	cmawmbB221
Cla97C02G027970	Cucurbita maxima (Rimu)	cmawmbB582
Cla97C02G027970	Cucurbita maxima (Rimu)	cmawmbB618
Cla97C02G027970	Cucurbita maxima (Rimu)	cmawmbB883
Cla97C02G027970	Cucurbita moschata (Rifu)	cmowmbB094
Cla97C02G027970	Cucurbita moschata (Rifu)	cmowmbB552
Cla97C02G027970	Cucurbita moschata (Rifu)	cmowmbB593
Cla97C02G027970	Cucurbita moschata (Rifu)	cmowmbB650
Cla97C02G027970	Wild cucumber (PI 183967)	cpiwmbB030
Cla97C02G027970	Cucumber (Chinese Long) v2	cuwmbB029
Cla97C02G027970	Melon (DHL92) v3.6.1	medwmbB164
Cla97C02G027970	Melon (DHL92) v3.5.1	mewmbB178
Cla97C02G027970	Watermelon (Charleston Gray)	wcgwmbB184
Cla97C02G027970	Watermelon (97103) v1	wmwmbB122
Cla97C02G027970	Wax gourd	wgowmbB365