ClCG02G001520 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G001520
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	F3L24.15 protein
Location	CG_Chr02 : 1636380 .. 1636670 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTGTCTGCGGCGCCGGAGCCACTAGAGACCGGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGA

mRNA sequence

ATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGA

Coding sequence (CDS)

ATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGA

Protein sequence

MAKLWFLCLIVAEILLIQAMASDLLLEGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH

Homology

[Close]

BLAST of ClCG02G001520 vs. TrEMBL
Match: A0A0A0K3N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.1e-24
Identity = 65/103 (63.11%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 1   MAKLWFL-CLIVAEILLIQAMASDLLL------------------EGYGVAEAPEIRRLG 60
           MAK+  L CLIV EI LIQA+ + +                    EG  VAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 85
           KHHGD S+AGGGVIIGGLVTA+FAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of ClCG02G001520 vs. TrEMBL
Match: A0A067KB75_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13835 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.5e-17
Identity = 56/95 (58.95%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 3  KLWFLCLIVAEILLIQAMASDLLLEGYGVA-------------EAPEIRRLGKHHGDD-S 62
          +L   CLI+A IL++QA A +   +   VA             EAPEIRRLGKHH  D S
Sbjct: 5  RLVISCLILAGILIVQATADESEKKSPSVADQPVASSHEWEEAEAPEIRRLGKHHSSDKS 64

Query: 63 VAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSV 84
          VAGGGVIIGGLVTAIFAAVFCYIRVT+KK   D V
Sbjct: 65 VAGGGVIIGGLVTAIFAAVFCYIRVTRKKGSDDLV 99

[Close]

BLAST of ClCG02G001520 vs. TrEMBL
Match: A0A067E958_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046843mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-16
Identity = 58/114 (50.88%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MAKLWFLCL-IVAEILLIQAMASDLLLEGYG----------------------------V 60
           MA+L  + L IVAEIL++QA+A    +   G                             
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSVSESSYYHNDPEA 60

Query: 61  AEAPEIRRLGKHH---GDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDS 83
           AEAPEIRRLGKHH    D SVAGGGVIIGGLVTAIFAAVFCYIRVT+K++G D+
Sbjct: 61  AEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRNGADA 114

[Close]

BLAST of ClCG02G001520 vs. TrEMBL
Match: V4U997_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017232mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-16
Identity = 58/114 (50.88%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MAKLWFLCL-IVAEILLIQAMASDLLLEGYG----------------------------V 60
           MA+L  + L IVAEIL++QA+A    +   G                             
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSVSESSYYHNDPEA 60

Query: 61  AEAPEIRRLGKHH---GDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDS 83
           AEAPEIRRLGKHH    D SVAGGGVIIGGLVTAIFAAVFCYIRVT+K++G D+
Sbjct: 61  AEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRNGADA 114

[Close]

BLAST of ClCG02G001520 vs. TrEMBL
Match: A5BAN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 1  MAKLWFLCLIVAEILLIQAMASDLLLEGYG-------------------VAEAPEIRRLG 60
          M +L  +CL++AEIL++QA+A     +  G                   VAEAP  RRLG
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLEVAEAPANRRLG 60

Query: 61 KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKK 78
          KHH D S+AGGGVIIGGL TAIFAAVFCYIR+T+++
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRRR 96

[Close]

BLAST of ClCG02G001520 vs. TAIR10
Match: AT3G09280.1 (AT3G09280.1 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-08
Identity = 29/53 (54.72%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 32 AEAPEIRRL------GKHHG--DDSVAGGGVIIGGLVTAIFAAVFCYIRVTKK 77
          AEAPE+  L      G HH   + SVAGGGVI+GGL T     VFCYIR T+K
Sbjct: 43 AEAPEVSHLEETVRRGHHHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

[Close]

BLAST of ClCG02G001520 vs. NCBI nr
Match: gi|700188326|gb|KGN43559.1| (hypothetical protein Csa_7G045480 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.8e-24
Identity = 65/103 (63.11%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 1   MAKLWFL-CLIVAEILLIQAMASDLLL------------------EGYGVAEAPEIRRLG 60
           MAK+  L CLIV EI LIQA+ + +                    EG  VAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 85
           KHHGD S+AGGGVIIGGLVTA+FAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of ClCG02G001520 vs. NCBI nr
Match: gi|643722407|gb|KDP32228.1| (hypothetical protein JCGZ_13835 [Jatropha curcas])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 56/95 (58.95%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 3  KLWFLCLIVAEILLIQAMASDLLLEGYGVA-------------EAPEIRRLGKHHGDD-S 62
          +L   CLI+A IL++QA A +   +   VA             EAPEIRRLGKHH  D S
Sbjct: 5  RLVISCLILAGILIVQATADESEKKSPSVADQPVASSHEWEEAEAPEIRRLGKHHSSDKS 64

Query: 63 VAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSV 84
          VAGGGVIIGGLVTAIFAAVFCYIRVT+KK   D V
Sbjct: 65 VAGGGVIIGGLVTAIFAAVFCYIRVTRKKGSDDLV 99

[Close]

BLAST of ClCG02G001520 vs. NCBI nr
Match: gi|567910263|ref|XP_006447445.1| (hypothetical protein CICLE_v10017232mg [Citrus clementina])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 58/114 (50.88%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MAKLWFLCL-IVAEILLIQAMASDLLLEGYG----------------------------V 60
           MA+L  + L IVAEIL++QA+A    +   G                             
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSVSESSYYHNDPEA 60

Query: 61  AEAPEIRRLGKHH---GDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDS 83
           AEAPEIRRLGKHH    D SVAGGGVIIGGLVTAIFAAVFCYIRVT+K++G D+
Sbjct: 61  AEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRNGADA 114

[Close]

BLAST of ClCG02G001520 vs. NCBI nr
Match: gi|147778492|emb|CAN69916.1| (hypothetical protein VITISV_044272 [Vitis vinifera])

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 1  MAKLWFLCLIVAEILLIQAMASDLLLEGYG-------------------VAEAPEIRRLG 60
          M +L  +CL++AEIL++QA+A     +  G                   VAEAP  RRLG
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLEVAEAPANRRLG 60

Query: 61 KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKK 78
          KHH D S+AGGGVIIGGL TAIFAAVFCYIR+T+++
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRRR 96

[Close]

BLAST of ClCG02G001520 vs. NCBI nr
Match: gi|641809283|gb|KDO36691.1| (hypothetical protein CISIN_1g038247mg [Citrus sinensis])

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-15
Identity = 58/114 (50.88%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 1   MAKLWFLCL-IVAEILLIQAMASDLLLEGYG----------------------------V 60
           MA+L  + L IVAEIL++QA+A    +   G                             
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSASESSYYHNDPEA 60

Query: 61  AEAPEIRRLGKHH---GDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDS 83
           AEAPEIRRLGKHH    D SVAGGGVIIGGLVTAIFAAVFCYIRVT+K+ G D+
Sbjct: 61  AEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRHGADA 114

The following BLAST results are available for this feature:

BLAST of ClCG02G001520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3N0_CUCSA	6.1e-24	63.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1	[more]
A0A067KB75_JATCU	9.5e-17	58.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13835 PE=4 SV=1	[more]
A0A067E958_CITSI	8.0e-16	50.88	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046843mg PE=4 SV=1	[more]
V4U997_9ROSI	8.0e-16	50.88	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017232mg PE=4 SV=1	[more]
A5BAN6_VITVI	1.0e-15	51.04	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044272 PE=4 SV=1	[more]

BLAST of ClCG02G001520 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09280.1	3.2e-08	54.72	unknown protein	[more]

BLAST of ClCG02G001520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188326\|gb\|KGN43559.1\|	8.8e-24	63.11	hypothetical protein Csa_7G045480 [Cucumis sativus]	[more]
gi\|643722407\|gb\|KDP32228.1\|	1.4e-16	58.95	hypothetical protein JCGZ_13835 [Jatropha curcas]	[more]
gi\|567910263\|ref\|XP_006447445.1\|	1.2e-15	50.88	hypothetical protein CICLE_v10017232mg [Citrus clementina]	[more]
gi\|147778492\|emb\|CAN69916.1\|	1.5e-15	51.04	hypothetical protein VITISV_044272 [Vitis vinifera]	[more]
gi\|641809283\|gb\|KDO36691.1\|	2.0e-15	50.88	hypothetical protein CISIN_1g038247mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G001520.1	ClCG02G001520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	FAMILY NOT NAMED	coord: 31..81 score: 7.6
None	No IPR available	PANTHER	PTHR34558:SF2	SUBFAMILY NOT NAMED	coord: 31..81 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G001520	Csa7G045480	Cucumber (Chinese Long) v2	cuwcgB546
ClCG02G001520	Cla007705	Watermelon (97103) v1	wcgwmB206
ClCG02G001520	Cla97C02G027970	Watermelon (97103) v2	wcgwmbB138
ClCG02G001520	Bhi05G001137	Wax gourd	wcgwgoB266
ClCG02G001520	CSPI07G04070	Wild cucumber (PI 183967)	cpiwcgB574
ClCG02G001520	Cucsa.148180	Cucumber (Gy14) v1	cgywcgB248
ClCG02G001520	CmaCh19G009460	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G001520	CmoCh19G009760	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G001520	Lsi11G014920	Bottle gourd (USVL1VR-Ls)	lsiwcgB097
ClCG02G001520	Cp4.1LG15g07760	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G001520	Carg19197	Silver-seed gourd	carwcgB0851
ClCG02G001520	Carg13550	Silver-seed gourd	carwcgB0032
ClCG02G001520	CsaV3_7G003930	Cucumber (Chinese Long) v3	cucwcgB571

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G001520	Cucumber (Gy14) v1	cgywcgB023
ClCG02G001520	Cucurbita maxima (Rimu)	cmawcgB102
ClCG02G001520	Cucurbita maxima (Rimu)	cmawcgB190
ClCG02G001520	Cucurbita maxima (Rimu)	cmawcgB494
ClCG02G001520	Cucurbita maxima (Rimu)	cmawcgB532
ClCG02G001520	Cucurbita maxima (Rimu)	cmawcgB580
ClCG02G001520	Cucurbita moschata (Rifu)	cmowcgB094
ClCG02G001520	Cucurbita moschata (Rifu)	cmowcgB181
ClCG02G001520	Cucurbita moschata (Rifu)	cmowcgB484
ClCG02G001520	Cucurbita moschata (Rifu)	cmowcgB529
ClCG02G001520	Cucurbita moschata (Rifu)	cmowcgB576
ClCG02G001520	Wild cucumber (PI 183967)	cpiwcgB036
ClCG02G001520	Wild cucumber (PI 183967)	cpiwcgB478
ClCG02G001520	Cucumber (Chinese Long) v2	cuwcgB032
ClCG02G001520	Cucumber (Chinese Long) v2	cuwcgB456
ClCG02G001520	Melon (DHL92) v3.5.1	mewcgB146
ClCG02G001520	Melon (DHL92) v3.5.1	mewcgB195
ClCG02G001520	Melon (DHL92) v3.5.1	mewcgB519
ClCG02G001520	Watermelon (97103) v1	wcgwmB183
ClCG02G001520	Watermelon (97103) v1	wcgwmB194
ClCG02G001520	Cucurbita pepo (Zucchini)	cpewcgB267
ClCG02G001520	Cucurbita pepo (Zucchini)	cpewcgB596
ClCG02G001520	Cucurbita pepo (Zucchini)	cpewcgB665
ClCG02G001520	Bottle gourd (USVL1VR-Ls)	lsiwcgB128
ClCG02G001520	Cucumber (Gy14) v2	cgybwcgB506
ClCG02G001520	Melon (DHL92) v3.6.1	medwcgB137
ClCG02G001520	Melon (DHL92) v3.6.1	medwcgB190
ClCG02G001520	Melon (DHL92) v3.6.1	medwcgB514
ClCG02G001520	Silver-seed gourd	carwcgB0329
ClCG02G001520	Silver-seed gourd	carwcgB0624
ClCG02G001520	Silver-seed gourd	carwcgB0696
ClCG02G001520	Cucumber (Chinese Long) v3	cucwcgB036
ClCG02G001520	Cucumber (Chinese Long) v3	cucwcgB476
ClCG02G001520	Watermelon (97103) v2	wcgwmbB155
ClCG02G001520	Wax gourd	wcgwgoB295
ClCG02G001520	Wax gourd	wcgwgoB310
ClCG02G001520	Watermelon (Charleston Gray)	wcgwcgB088
ClCG02G001520	Watermelon (Charleston Gray)	wcgwcgB123