CSPI07G04070 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G04070
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transmembrane protein, putative
Location	Chr7 : 3160000 .. 3160448 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAACACCCCCAAAACCCAAATCCCCATCTTCAAACTTCATCAAAAAAACTCCCAAAATCCCCCTTCAAATTCAGAAACCCATTTTCACAAACCTCCTTAAACTTAAATAAAAAGCCTCCTCATTTCCAAATCCCATGGCCAAAATTTGCCTTCTTTTCTGCCTCATTGTGGGCGAGATCTTCCTAATTCAAGCAATCACGACTTCGATTGCTACAACAACAGAGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCATTGA

mRNA sequence

ATGGCCAAAATTTGCCTTCTTTTCTGCCTCATTGTGGGCGAGATCTTCCTAATTCAAGCAATCACGACTTCGATTGCTACAACAACAGAGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCATTGA

Coding sequence (CDS)

ATGGCCAAAATTTGCCTTCTTTTCTGCCTCATTGTGGGCGAGATCTTCCTAATTCAAGCAATCACGACTTCGATTGCTACAACAACAGAGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCATTGA

Homology

[Close]

BLAST of CSPI07G04070 vs. TrEMBL
Match: A0A0A0K3N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60
           MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 104
           KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of CSPI07G04070 vs. TrEMBL
Match: A0A067DDL6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038247mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 62/116 (53.45%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 1   MAKICLLFCLIVGEIFLIQAITTSI------------ATTTELPLSVAPESSEKGTREGS 60
           MA++ L+   IV EI ++QA+                A   + P S A ESS        
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSASESSYY--HNDP 60

Query: 61  EVAEAPEIRRLGKHH---GDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDS 102
           E AEAPEIRRLGKHH    DKS+AGGGVIIGGLVTA+FAAVFCYIRVTRKR G D+
Sbjct: 61  EAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRHGADA 114

[Close]

BLAST of CSPI07G04070 vs. TrEMBL
Match: A0A067E958_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046843mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 61/116 (52.59%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 1   MAKICLLFCLIVGEIFLIQAITTSI------------ATTTELPLSVAPESSEKGTREGS 60
           MA++ L+   IV EI ++QA+                A   + P S   ESS        
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSVSESSYY--HNDP 60

Query: 61  EVAEAPEIRRLGKHH---GDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDS 102
           E AEAPEIRRLGKHH    DKS+AGGGVIIGGLVTA+FAAVFCYIRVTRKR+G D+
Sbjct: 61  EAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRNGADA 114

[Close]

BLAST of CSPI07G04070 vs. TrEMBL
Match: V4U997_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017232mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 61/116 (52.59%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 1   MAKICLLFCLIVGEIFLIQAITTSI------------ATTTELPLSVAPESSEKGTREGS 60
           MA++ L+   IV EI ++QA+                A   + P S   ESS        
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSVSESSYY--HNDP 60

Query: 61  EVAEAPEIRRLGKHH---GDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDS 102
           E AEAPEIRRLGKHH    DKS+AGGGVIIGGLVTA+FAAVFCYIRVTRKR+G D+
Sbjct: 61  EAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRNGADA 114

[Close]

BLAST of CSPI07G04070 vs. TrEMBL
Match: A0A0B2SAC2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_017231 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.0e-17
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 36  APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 95
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

Query: 96  KRD 98
           +RD
Sbjct: 128 RRD 130

[Close]

BLAST of CSPI07G04070 vs. TAIR10
Match: AT3G09280.1 (AT3G09280.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 6.8e-08
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 1


Query: 16 FLIQAITTSIATTTELPLSVAPESSEKGTREG-SEVAEAPEIRRL------GKHHG--DK 75
          FL+  + +  A ++E   +  P + + G  E   E AEAPE+  L      G HH   ++
Sbjct: 10 FLLTYVFSMAAASSE---AEPPATRKLGRHEWPGEEAEAPEVSHLEETVRRGHHHSTVER 69

Query: 76 SMAGGGVIIGGLVTAVFAAVFCYIRVTRK 96
          S+AGGGVI+GGL T     VFCYIR TRK
Sbjct: 70 SVAGGGVILGGLATTFLVVVFCYIRATRK 95

[Close]

BLAST of CSPI07G04070 vs. NCBI nr
Match: gi|700188326|gb|KGN43559.1| (hypothetical protein Csa_7G045480 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60
           MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 104
           KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of CSPI07G04070 vs. NCBI nr
Match: gi|641809283|gb|KDO36691.1| (hypothetical protein CISIN_1g038247mg [Citrus sinensis])

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-17
Identity = 62/116 (53.45%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 1   MAKICLLFCLIVGEIFLIQAITTSI------------ATTTELPLSVAPESSEKGTREGS 60
           MA++ L+   IV EI ++QA+                A   + P S A ESS        
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSASESSYY--HNDP 60

Query: 61  EVAEAPEIRRLGKHH---GDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDS 102
           E AEAPEIRRLGKHH    DKS+AGGGVIIGGLVTA+FAAVFCYIRVTRKR G D+
Sbjct: 61  EAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRHGADA 114

[Close]

BLAST of CSPI07G04070 vs. NCBI nr
Match: gi|567910263|ref|XP_006447445.1| (hypothetical protein CICLE_v10017232mg [Citrus clementina])

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-17
Identity = 61/116 (52.59%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 1   MAKICLLFCLIVGEIFLIQAITTSI------------ATTTELPLSVAPESSEKGTREGS 60
           MA++ L+   IV EI ++QA+                A   + P S   ESS        
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSVSESSYY--HNDP 60

Query: 61  EVAEAPEIRRLGKHH---GDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDS 102
           E AEAPEIRRLGKHH    DKS+AGGGVIIGGLVTA+FAAVFCYIRVTRKR+G D+
Sbjct: 61  EAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRNGADA 114

[Close]

BLAST of CSPI07G04070 vs. NCBI nr
Match: gi|947107688|gb|KRH56071.1| (hypothetical protein GLYMA_06G301200 [Glycine max])

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 36  APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 95
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

Query: 96  KRD 98
           +RD
Sbjct: 128 RRD 130

[Close]

BLAST of CSPI07G04070 vs. NCBI nr
Match: gi|734421009|gb|KHN41187.1| (hypothetical protein glysoja_017231 [Glycine soja])

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-16
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 36  APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 95
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

Query: 96  KRD 98
           +RD
Sbjct: 128 RRD 130

The following BLAST results are available for this feature:

BLAST of CSPI07G04070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G04070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3N0_CUCSA	1.3e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1	[more]
A0A067DDL6_CITSI	1.4e-17	53.45	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038247mg PE=4 SV=1	[more]
A0A067E958_CITSI	2.4e-17	52.59	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046843mg PE=4 SV=1	[more]
V4U997_9ROSI	2.4e-17	52.59	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017232mg PE=4 SV=1	[more]
A0A0B2SAC2_GLYSO	9.0e-17	73.02	Uncharacterized protein OS=Glycine soja GN=glysoja_017231 PE=4 SV=1	[more]

BLAST of CSPI07G04070 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09280.1	6.8e-08	41.57	unknown protein	[more]

BLAST of CSPI07G04070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188326\|gb\|KGN43559.1\|	1.8e-47	100.00	hypothetical protein Csa_7G045480 [Cucumis sativus]	[more]
gi\|641809283\|gb\|KDO36691.1\|	2.0e-17	53.45	hypothetical protein CISIN_1g038247mg [Citrus sinensis]	[more]
gi\|567910263\|ref\|XP_006447445.1\|	3.4e-17	52.59	hypothetical protein CICLE_v10017232mg [Citrus clementina]	[more]
gi\|947107688\|gb\|KRH56071.1\|	1.3e-16	73.02	hypothetical protein GLYMA_06G301200 [Glycine max]	[more]
gi\|734421009\|gb\|KHN41187.1\|	1.3e-16	73.02	hypothetical protein glysoja_017231 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G04070.1	CSPI07G04070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	FAMILY NOT NAMED	coord: 37..100 score: 5.0
None	No IPR available	PANTHER	PTHR34558:SF2	SUBFAMILY NOT NAMED	coord: 37..100 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G04070	Cla007705	Watermelon (97103) v1	cpiwmB614
CSPI07G04070	Csa7G045480	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G04070	ClCG02G001520	Watermelon (Charleston Gray)	cpiwcgB574
CSPI07G04070	Lsi11G014920	Bottle gourd (USVL1VR-Ls)	cpilsiB505
CSPI07G04070	CsaV3_7G003930	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G04070	Cla97C02G027970	Watermelon (97103) v2	cpiwmbB553
CSPI07G04070	Bhi05G001137	Wax gourd	cpiwgoB681
CSPI07G04070	Cucsa.148180	Cucumber (Gy14) v1	cgycpiB220
CSPI07G04070	CmaCh19G009460	Cucurbita maxima (Rimu)	cmacpiB533
CSPI07G04070	CmoCh19G009760	Cucurbita moschata (Rifu)	cmocpiB524
CSPI07G04070	CmoCh02G001450	Cucurbita moschata (Rifu)	cmocpiB643
CSPI07G04070	Cp4.1LG15g07760	Cucurbita pepo (Zucchini)	cpecpiB257
CSPI07G04070	Cp4.1LG05g14540	Cucurbita pepo (Zucchini)	cpecpiB768
CSPI07G04070	Carg19197	Silver-seed gourd	carcpiB0911
CSPI07G04070	Carg13550	Silver-seed gourd	carcpiB0034

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G04070	Bottle gourd (USVL1VR-Ls)	cpilsiB516
CSPI07G04070	Bottle gourd (USVL1VR-Ls)	cpilsiB522
CSPI07G04070	Melon (DHL92) v3.6.1	cpimedB509
CSPI07G04070	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G04070	Melon (DHL92) v3.6.1	cpimedB560
CSPI07G04070	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G04070	Silver-seed gourd	carcpiB0673
CSPI07G04070	Silver-seed gourd	carcpiB0755
CSPI07G04070	Cucumber (Chinese Long) v3	cpicucB380
CSPI07G04070	Cucumber (Chinese Long) v3	cpicucB409
CSPI07G04070	Watermelon (97103) v2	cpiwmbB562
CSPI07G04070	Watermelon (97103) v2	cpiwmbB539
CSPI07G04070	Wax gourd	cpiwgoB694
CSPI07G04070	Wax gourd	cpiwgoB699
CSPI07G04070	Wild cucumber (PI 183967)	cpicpiB050
CSPI07G04070	Wild cucumber (PI 183967)	cpicpiB188
CSPI07G04070	Cucumber (Gy14) v1	cgycpiB029
CSPI07G04070	Cucurbita maxima (Rimu)	cmacpiB144
CSPI07G04070	Cucurbita maxima (Rimu)	cmacpiB233
CSPI07G04070	Cucurbita maxima (Rimu)	cmacpiB576
CSPI07G04070	Cucurbita maxima (Rimu)	cmacpiB650
CSPI07G04070	Cucurbita moschata (Rifu)	cmocpiB131
CSPI07G04070	Cucurbita moschata (Rifu)	cmocpiB220
CSPI07G04070	Cucurbita moschata (Rifu)	cmocpiB568
CSPI07G04070	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G04070	Melon (DHL92) v3.5.1	cpimeB575
CSPI07G04070	Watermelon (Charleston Gray)	cpiwcgB566
CSPI07G04070	Watermelon (Charleston Gray)	cpiwcgB583
CSPI07G04070	Watermelon (97103) v1	cpiwmB600
CSPI07G04070	Watermelon (97103) v1	cpiwmB612
CSPI07G04070	Cucurbita pepo (Zucchini)	cpecpiB301
CSPI07G04070	Cucurbita pepo (Zucchini)	cpecpiB692