ClCG02G001520.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G001520.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	F3L24.15 protein
Location	CG_Chr02 : 1636380 .. 1636670 (-)
Sequence length	255

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTGTCTGCGGCGCCGGAGCCACTAGAGACCGGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGA

mRNA sequence

ATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGA

Coding sequence (CDS)

ATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGA

Protein sequence

MAKLWFLCLIVAEILLIQAMASDLLLEGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH

Homology

[Close]

BLAST of ClCG02G001520.1 vs. TrEMBL
Match: A0A0A0K3N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.1e-24
Identity = 65/103 (63.11%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 1   MAKLWFL-CLIVAEILLIQAMASDLLL------------------EGYGVAEAPEIRRLG 60
           MAK+  L CLIV EI LIQA+ + +                    EG  VAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 85
           KHHGD S+AGGGVIIGGLVTA+FAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of ClCG02G001520.1 vs. TrEMBL
Match: A0A067KB75_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13835 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.5e-17
Identity = 56/95 (58.95%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 3  KLWFLCLIVAEILLIQAMASDLLLEGYGVA-------------EAPEIRRLGKHHGDD-S 62
          +L   CLI+A IL++QA A +   +   VA             EAPEIRRLGKHH  D S
Sbjct: 5  RLVISCLILAGILIVQATADESEKKSPSVADQPVASSHEWEEAEAPEIRRLGKHHSSDKS 64

Query: 63 VAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSV 84
          VAGGGVIIGGLVTAIFAAVFCYIRVT+KK   D V
Sbjct: 65 VAGGGVIIGGLVTAIFAAVFCYIRVTRKKGSDDLV 99

[Close]

BLAST of ClCG02G001520.1 vs. TrEMBL
Match: A0A067E958_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046843mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-16
Identity = 58/114 (50.88%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MAKLWFLCL-IVAEILLIQAMASDLLLEGYG----------------------------V 60
           MA+L  + L IVAEIL++QA+A    +   G                             
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSVSESSYYHNDPEA 60

Query: 61  AEAPEIRRLGKHH---GDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDS 83
           AEAPEIRRLGKHH    D SVAGGGVIIGGLVTAIFAAVFCYIRVT+K++G D+
Sbjct: 61  AEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRNGADA 114

[Close]

BLAST of ClCG02G001520.1 vs. TrEMBL
Match: V4U997_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017232mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-16
Identity = 58/114 (50.88%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MAKLWFLCL-IVAEILLIQAMASDLLLEGYG----------------------------V 60
           MA+L  + L IVAEIL++QA+A    +   G                             
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSVSESSYYHNDPEA 60

Query: 61  AEAPEIRRLGKHH---GDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDS 83
           AEAPEIRRLGKHH    D SVAGGGVIIGGLVTAIFAAVFCYIRVT+K++G D+
Sbjct: 61  AEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRNGADA 114

[Close]

BLAST of ClCG02G001520.1 vs. TrEMBL
Match: A5BAN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 1  MAKLWFLCLIVAEILLIQAMASDLLLEGYG-------------------VAEAPEIRRLG 60
          M +L  +CL++AEIL++QA+A     +  G                   VAEAP  RRLG
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLEVAEAPANRRLG 60

Query: 61 KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKK 78
          KHH D S+AGGGVIIGGL TAIFAAVFCYIR+T+++
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRRR 96

[Close]

BLAST of ClCG02G001520.1 vs. TAIR10
Match: AT3G09280.1 (AT3G09280.1 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-08
Identity = 29/53 (54.72%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 32 AEAPEIRRL------GKHHG--DDSVAGGGVIIGGLVTAIFAAVFCYIRVTKK 77
          AEAPE+  L      G HH   + SVAGGGVI+GGL T     VFCYIR T+K
Sbjct: 43 AEAPEVSHLEETVRRGHHHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

[Close]

BLAST of ClCG02G001520.1 vs. NCBI nr
Match: gi|700188326|gb|KGN43559.1| (hypothetical protein Csa_7G045480 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.8e-24
Identity = 65/103 (63.11%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 1   MAKLWFL-CLIVAEILLIQAMASDLLL------------------EGYGVAEAPEIRRLG 60
           MAK+  L CLIV EI LIQA+ + +                    EG  VAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 85
           KHHGD S+AGGGVIIGGLVTA+FAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of ClCG02G001520.1 vs. NCBI nr
Match: gi|643722407|gb|KDP32228.1| (hypothetical protein JCGZ_13835 [Jatropha curcas])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 56/95 (58.95%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 3  KLWFLCLIVAEILLIQAMASDLLLEGYGVA-------------EAPEIRRLGKHHGDD-S 62
          +L   CLI+A IL++QA A +   +   VA             EAPEIRRLGKHH  D S
Sbjct: 5  RLVISCLILAGILIVQATADESEKKSPSVADQPVASSHEWEEAEAPEIRRLGKHHSSDKS 64

Query: 63 VAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSV 84
          VAGGGVIIGGLVTAIFAAVFCYIRVT+KK   D V
Sbjct: 65 VAGGGVIIGGLVTAIFAAVFCYIRVTRKKGSDDLV 99

[Close]

BLAST of ClCG02G001520.1 vs. NCBI nr
Match: gi|567910263|ref|XP_006447445.1| (hypothetical protein CICLE_v10017232mg [Citrus clementina])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 58/114 (50.88%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 1   MAKLWFLCL-IVAEILLIQAMASDLLLEGYG----------------------------V 60
           MA+L  + L IVAEIL++QA+A    +   G                             
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSVSESSYYHNDPEA 60

Query: 61  AEAPEIRRLGKHH---GDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDS 83
           AEAPEIRRLGKHH    D SVAGGGVIIGGLVTAIFAAVFCYIRVT+K++G D+
Sbjct: 61  AEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRNGADA 114

[Close]

BLAST of ClCG02G001520.1 vs. NCBI nr
Match: gi|147778492|emb|CAN69916.1| (hypothetical protein VITISV_044272 [Vitis vinifera])

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 1  MAKLWFLCLIVAEILLIQAMASDLLLEGYG-------------------VAEAPEIRRLG 60
          M +L  +CL++AEIL++QA+A     +  G                   VAEAP  RRLG
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLEVAEAPANRRLG 60

Query: 61 KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKK 78
          KHH D S+AGGGVIIGGL TAIFAAVFCYIR+T+++
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRRR 96

[Close]

BLAST of ClCG02G001520.1 vs. NCBI nr
Match: gi|641809283|gb|KDO36691.1| (hypothetical protein CISIN_1g038247mg [Citrus sinensis])

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-15
Identity = 58/114 (50.88%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 1   MAKLWFLCL-IVAEILLIQAMASDLLLEGYG----------------------------V 60
           MA+L  + L IVAEIL++QA+A    +   G                             
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSASESSYYHNDPEA 60

Query: 61  AEAPEIRRLGKHH---GDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDS 83
           AEAPEIRRLGKHH    D SVAGGGVIIGGLVTAIFAAVFCYIRVT+K+ G D+
Sbjct: 61  AEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRHGADA 114

The following BLAST results are available for this feature:

BLAST of ClCG02G001520.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3N0_CUCSA	6.1e-24	63.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1	[more]
A0A067KB75_JATCU	9.5e-17	58.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13835 PE=4 SV=1	[more]
A0A067E958_CITSI	8.0e-16	50.88	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046843mg PE=4 SV=1	[more]
V4U997_9ROSI	8.0e-16	50.88	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017232mg PE=4 SV=1	[more]
A5BAN6_VITVI	1.0e-15	51.04	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044272 PE=4 SV=1	[more]

BLAST of ClCG02G001520.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09280.1	3.2e-08	54.72	unknown protein	[more]

BLAST of ClCG02G001520.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188326\|gb\|KGN43559.1\|	8.8e-24	63.11	hypothetical protein Csa_7G045480 [Cucumis sativus]	[more]
gi\|643722407\|gb\|KDP32228.1\|	1.4e-16	58.95	hypothetical protein JCGZ_13835 [Jatropha curcas]	[more]
gi\|567910263\|ref\|XP_006447445.1\|	1.2e-15	50.88	hypothetical protein CICLE_v10017232mg [Citrus clementina]	[more]
gi\|147778492\|emb\|CAN69916.1\|	1.5e-15	51.04	hypothetical protein VITISV_044272 [Vitis vinifera]	[more]
gi\|641809283\|gb\|KDO36691.1\|	2.0e-15	50.88	hypothetical protein CISIN_1g038247mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G001520	ClCG02G001520	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G001520.1	ClCG02G001520.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G001520.1.cds2	ClCG02G001520.1.cds2	CDS
ClCG02G001520.1.cds1	ClCG02G001520.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	FAMILY NOT NAMED	coord: 31..81 score: 7.6
None	No IPR available	PANTHER	PTHR34558:SF2	SUBFAMILY NOT NAMED	coord: 31..81 score: 7.6