Cucsa.148180.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.148180.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transmembrane protein, putative
Location	scaffold01107 : 371820 .. 372248 (-)
Sequence length	215

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAGAGATGGGGTTGATTCGGTTCATTGAGACTGATCCTAATTTCTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTATATATATATATATATATATAAACATATTCTTTTGTTTTTTGGAGGAAATTTTAG

mRNA sequence

AGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAGAGATGGGGAAATTTTAG

Coding sequence (CDS)

AGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAGAGATGGGGAAATTTTAG

Protein sequence

LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKEMGKF*

Homology

[Close]

BLAST of Cucsa.148180.1 vs. TrEMBL
Match: A0A0A0K3N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.7e-28
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 60
          LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI
Sbjct: 31 LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 90

Query: 61 RVTRKEMG 69
          RVTRK  G
Sbjct: 91 RVTRKRDG 98

[Close]

BLAST of Cucsa.148180.1 vs. TrEMBL
Match: W9R8T9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008734 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.1e-17
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 2   PLSVAPESSE-KGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 61
           P+S A E SE K   +    AEAP IRRLGKHH DKSMAGGGVIIGGLVTA+FAAVFCYI
Sbjct: 44  PVSSAEERSEGKEASDDENEAEAPAIRRLGKHHSDKSMAGGGVIIGGLVTAIFAAVFCYI 103

Query: 62  RVTRK 66
           RVTRK
Sbjct: 104 RVTRK 108

[Close]

BLAST of Cucsa.148180.1 vs. TrEMBL
Match: A0A0B2SAC2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_017231 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-16
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 6   APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 65
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

[Close]

BLAST of Cucsa.148180.1 vs. TrEMBL
Match: I1KF92_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G301200 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-16
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 6   APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 65
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

[Close]

BLAST of Cucsa.148180.1 vs. TrEMBL
Match: A0A067DDL6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038247mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-15
Identity = 50/70 (71.43%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 2   PLSVAPESSEKGTREGSEVAEAPEIRRLGKHH---GDKSMAGGGVIIGGLVTAVFAAVFC 61
           P S A ESS        E AEAPEIRRLGKHH    DKS+AGGGVIIGGLVTA+FAAVFC
Sbjct: 44  PASSASESSYY--HNDPEAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFC 103

Query: 62  YIRVTRKEMG 69
           YIRVTRK  G
Sbjct: 104 YIRVTRKRHG 111

[Close]

BLAST of Cucsa.148180.1 vs. TAIR10
Match: AT3G09280.1 (AT3G09280.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 4.2e-09
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 7  PESSEKGTREG-SEVAEAPEIRRL------GKHHG--DKSMAGGGVIIGGLVTAVFAAVF 66
          P + + G  E   E AEAPE+  L      G HH   ++S+AGGGVI+GGL T     VF
Sbjct: 28 PATRKLGRHEWPGEEAEAPEVSHLEETVRRGHHHSTVERSVAGGGVILGGLATTFLVVVF 87

[Close]

BLAST of Cucsa.148180.1 vs. NCBI nr
Match: gi|700188326|gb|KGN43559.1| (hypothetical protein Csa_7G045480 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-28
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 60
          LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI
Sbjct: 31 LPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 90

Query: 61 RVTRKEMG 69
          RVTRK  G
Sbjct: 91 RVTRKRDG 98

[Close]

BLAST of Cucsa.148180.1 vs. NCBI nr
Match: gi|703094258|ref|XP_010095197.1| (hypothetical protein L484_008734 [Morus notabilis])

HSP 1 Score: 94.4 bits (233), Expect = 8.8e-17
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 2   PLSVAPESSE-KGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYI 61
           P+S A E SE K   +    AEAP IRRLGKHH DKSMAGGGVIIGGLVTA+FAAVFCYI
Sbjct: 44  PVSSAEERSEGKEASDDENEAEAPAIRRLGKHHSDKSMAGGGVIIGGLVTAIFAAVFCYI 103

Query: 62  RVTRK 66
           RVTRK
Sbjct: 104 RVTRK 108

[Close]

BLAST of Cucsa.148180.1 vs. NCBI nr
Match: gi|947107688|gb|KRH56071.1| (hypothetical protein GLYMA_06G301200 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-16
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 6   APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 65
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

[Close]

BLAST of Cucsa.148180.1 vs. NCBI nr
Match: gi|734421009|gb|KHN41187.1| (hypothetical protein glysoja_017231 [Glycine soja])

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-16
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 6   APESSEKGTREGSEVAEAPEIRRLGKHHG-DKSMAGGGVIIGGLVTAVFAAVFCYIRVTR 65
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIRVTR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIRVTR 127

[Close]

BLAST of Cucsa.148180.1 vs. NCBI nr
Match: gi|641809283|gb|KDO36691.1| (hypothetical protein CISIN_1g038247mg [Citrus sinensis])

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-15
Identity = 50/70 (71.43%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 2   PLSVAPESSEKGTREGSEVAEAPEIRRLGKHH---GDKSMAGGGVIIGGLVTAVFAAVFC 61
           P S A ESS        E AEAPEIRRLGKHH    DKS+AGGGVIIGGLVTA+FAAVFC
Sbjct: 44  PASSASESSYY--HNDPEAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFC 103

Query: 62  YIRVTRKEMG 69
           YIRVTRK  G
Sbjct: 104 YIRVTRKRHG 111

The following BLAST results are available for this feature:

BLAST of Cucsa.148180.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3N0_CUCSA	2.7e-28	97.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1	[more]
W9R8T9_9ROSA	6.1e-17	75.38	Uncharacterized protein OS=Morus notabilis GN=L484_008734 PE=4 SV=1	[more]
A0A0B2SAC2_GLYSO	3.0e-16	72.13	Uncharacterized protein OS=Glycine soja GN=glysoja_017231 PE=4 SV=1	[more]
I1KF92_SOYBN	3.0e-16	72.13	Uncharacterized protein OS=Glycine max GN=GLYMA_06G301200 PE=4 SV=1	[more]
A0A067DDL6_CITSI	2.0e-15	71.43	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038247mg PE=4 SV=1	[more]

BLAST of Cucsa.148180.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09280.1	4.2e-09	48.53	unknown protein	[more]

BLAST of Cucsa.148180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188326\|gb\|KGN43559.1\|	3.8e-28	97.06	hypothetical protein Csa_7G045480 [Cucumis sativus]	[more]
gi\|703094258\|ref\|XP_010095197.1\|	8.8e-17	75.38	hypothetical protein L484_008734 [Morus notabilis]	[more]
gi\|947107688\|gb\|KRH56071.1\|	4.4e-16	72.13	hypothetical protein GLYMA_06G301200 [Glycine max]	[more]
gi\|734421009\|gb\|KHN41187.1\|	4.4e-16	72.13	hypothetical protein glysoja_017231 [Glycine soja]	[more]
gi\|641809283\|gb\|KDO36691.1\|	2.8e-15	71.43	hypothetical protein CISIN_1g038247mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.148180	Cucsa.148180	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.148180.1	Cucsa.148180.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.148180.1.CDS.2	Cucsa.148180.1.CDS.2	CDS
Cucsa.148180.1.CDS.1	Cucsa.148180.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	FAMILY NOT NAMED	coord: 7..65 score: 9.8
None	No IPR available	PANTHER	PTHR34558:SF2	SUBFAMILY NOT NAMED	coord: 7..65 score: 9.8