Cucsa.143700 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.143700
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRNA-dependent RNA polymerase 1
Locationscaffold01080 : 27081 .. 33042 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCCCAATTATGGAATTATATCTCTTCATTCCTCCATTTTCGTTTCTCCATTCCCCAACTCTCCTATTTTGCACTACACTGTTCTCTACTGCCTTCTGCATCCTCTTTTCATGAATCAATCTGCTTGGTATTCACCTAACTTTTTCTTCCATTGTTGAGAATAGATGGACTATTGATGTGTTTTTCTTTTtATATTGTAAAGCTATTCTTCTTTCTTTGTGTTTCTTCATCTGGGTTCATTTTTTATCATGTTTTTTCCCATTTCTTTTTGTTCCCCTGTATTTTCTTTGTATTTAGCAACGTATCCTCTTCTGCTCTCTCTGTAGATTCTTACTGCTTCTGGGGCTGTTTATGATCTGGGGTTGTTTCTTGTCTTCAAATTTTAGTTTTCACTATGTGGGTGTCCGTTTGATTATGAAAACGTGTTATTCTGATGTTCCCACACATTTTCTTGATCATGTATGAGTTACCATTAGTATGCATTCTGCTCTTTACCAAATGAGTATAATGTGATCTAGCTTTCTCTATTAATGTCGGTGAGATCCTCTATATCTTGAATGTGTCATACCTTTTCAATTTGATCAAGATGATAATGTTTTTGCATTTGGAATGAAGTTATATATAGAAACTTATGGAAAAAGGGTTAAATAAATATTAATCTTTCCTCGATGGAATGTAAGAAACACTTTTTAATCTATCTGCTCACTTCTTTATTTTGAGACTTGGTTTTTTGGGTTGAATAATATATGGGGTGAGGTATTTGAACAGTTGATCTTTTGGTCAAGGGTACATATATTATGCTAGTTGAACTTGGCTTTCTTTTTAGGCTTCATCATATGCATTGTAATCAATTTGTTTGATATGACAGAAAGAAGTTCGGAGTTGATTTTTCTTGGATTGGATGGGTAAAACAATTCAGCTTTTTGGATTCCCTTCTGGTGTATTGCAAGAATCAGTTAAGACGTTTGTAGAGGGAATTACAGGCACAGGAACTATTGATGCCATAAATACGAAACGTTCGAAGGGAGGAGGAAGACGAGTGTATGCTATCATCCAGTTTACTGATGAAGAAGGTGCTAAGTCAATTATATCTAAGGCTACTGAACGCCTTTGTTATGGTACTTCTTATCTGAAGGCAAGGGAGATGAAACATGATATTCTACCAGATCCGCTTGTCTTTGATTACAACTTCAAAGCTCTAAGACTACATCTTGGCTGTCAGATATCAAAGGAAAGTTTTTCCGTGTTATGGACAGAGTCGAATGTTTCTGTAGATTTCGGGTTTGAGCTGCGCAAGCTTTATTTCTTCATATCCTATCCTCGTGTTGACTACATGCTCGTATTGCGCTACGAGAACATTTGGCAGGTTGAGTTACACAAGCCACATGGTCAATCTGTAGATTATCTTCTGATTCAGGTTCATCCATTAACTTTGAACAATGTCATGTCATTAGTGTACTGTTGTATTTTCTCCTCACTATTGAGAAATATCATTGATTCATCCCAAGCAAGTTTCACCTAAATTTTTCACTTTATTCATGGTATTGTTCTCTAATTACGGGGATTCAACTACTGACTCATGTACGTGCTCATAGGCCTGATTTCCATCACAGAACAGTGGACGGATATAAAATGATAACTGAAAATAAAAATTTAGTGAACCACTAAAATCATCATTTATACCTAAGTTCCTGAGAGAAATATATAGACTGAACACTTTATGGGACAAAGGAATTAAGTGAATTTATTGATAACTTCGATGCAAAAAAGAACTGAGAAACGATCAAGGTTTTATCAAAAGATTGTAAAAGGGATAGTGGAAGATAGCTGTAGATAAATTCCAGTGCTTCAAATGGGTGAAAGAAGCTATAATTTTATTAAAAAGGTGTCTTAGTTGATAATTTTATCATACATTTTTTCTCCAACTTGATAACTTCAAGACTATGGGTAGGATTTGGATATAATGAGATTTTGAGCCATATAAGGTTAATGTTGTTTAGTAATTGTAATCTGGCAGGATATGTTTTCTTTGAACAGAGCTAAAACATGTCCCTAGATATGAATTTTAACAAGCTAAGTATAAACAGAACTAAGCTTGCAACTTTTCTATATTTCTATACTTCAGGATAAGCTTATAAACGCAGGTAATCCGTGCAAGTGAACATATGTTTCATAAAAACAAATTATGCTGTCTTCATACTGATGTTGAAATAAGCAAGTCAAAGTTCAATGGCAAAGAATTTGAGAATAGCTTAGGTTCTTGGCCCATGCACATTTTATGTTGTATATATTCTAACTATGACATGTTTGTACTGTTAGTTATTTGGTGCTCCACGGATTTATGAAAGAGATGCAAGGTCTTTTGGACTCATTACTGAAGACCCTTTCTTAAACTTTTCCACGGAAATTGACACCCAATGGTTTCGAGCAACTGATTTTACTCCATCATGTAGTATTGGACAATCTGCTGCTTTATGCTTGGAGATTCCCTACGGTCGCCAGCTCCCTAATTTTCATGATAAATTTGCTTACTTCAAAGAAATCAAGGGTAAATTTACATTGGTCAGTGGTTCTACTTATTCCTCCAATGTAAACTTGGTACCTGTAGTTACACCTCCTCGAACCATCAACTTGCCATATACAATTTTGTTTAAGATAAATTTGTTGGTACAACAAGGATGTCTTCCAGGCCCAGCTCTTGATATTAGTTTCTATCAGATGGTAGATTCTCAGATATACAATACTGCCGTCATAGATCATGCGTTAAAGAAACTTCTCCACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGATGAGGAATACAGAAAGTACTTCAAATTAAAGAATCCCCCCCAGCCACCTATTTTGACCTTGAATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTGACACCTTGTAAAGTTTACTTTTGTGGTCCAGAAGTTAACATTTCAAATCGTGTATTACGCCGGTATCCTGACTACATTGACAACTTTTTGCGTGTTTCATTTGTTGACGAGGAATTGGGTAAAATGTATTCAACTGAGTTGTCTCCACGTGCATCTTCTTCTTTGGAGGATGGAAAGACAAAAATTTTTAAACGGATTCTTTCAGTTCTAAGAGATGGCATCACTATTGGTGATAAGAAGTTTGAGTTTCTAGCTTATTCATCTAGTCAATTACGGGAAAATGCTGCATGGATGTTTGCTCCAAAAAATGAACTTACTGCAGCTAAAATAAGGCAATGGATGGGAGATTTTCATAATATACGAAATGTAGCCAAGTATGCTGCTAGACTAGGCCAATCCTTTGGTTCATCAACAGAAACTTTAAGTGTCAGTAGACGTGAAGTTAAAGTTATTCCTGATATTGAAGTTGAATCAGGTAGTGGTGTCAATTATGTCTTCTCTGATGGTATTGGGAAAATAGCAGCTAGTTTTGCTAGAAAAGTGGCTAAAAAATGTGGGATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCTGTTGATCCTACCTCATCAGTAAAATTATCGCTAAGGAACAGCATGCTCAAGTATGAATCAACAGACACGAAGCTTGATGTTTTATCATGGAGTAAATATCATCCTTGCTTTCTAAATCGTCAGTTGATTACTCTTTTGTCTACACTTGGAGTTCAGGATCATGTTTTTGAGAGTAAACAACAGGAGTTGATTGATGAATTGGACACCATTTTTAGTGATCCATTGAAGGCTCAGCAGGCTCTTGAGCTAATGTCTCCAGGAGAGAATACCAAGATACTTAAGGAAATGATGTTGTGCGGTTACAAACCTGATTCTGAACCTTTCTTAAGAATGATGTTGCACACATTCAGAGAATCAAAGTTGATGGAATTGCGAATGAAGTCAAGGATCTTCATTCCAAATGGAAGAGCAATGATGGGATGTCTCGACGAAACAAGAAACTTGGAATATGGGGAGGTATTTGTGCAGTGTTCTGCACATCAGCAGCTGCATGACGATCGCGTAATCTTTAAGAGAATAAAATCGAACCGGCATTTCATTGTAACTGGAACAGTTGTAGTGGCCAAAAACCCCTGCTTGCACCCAGGTGATGTGCGCGTTTTAACAGCCGTGGATGTACCATCACTGCATCACATGATAGATTGTGTGGTTTTTCCACAAAAAGGGTCAAGGTAAATGATCTATTTTAACATCAAAATTTACATGTCCAGTTCAAGTAAAATAAAATATATTTCTCCTTTTCAGTCTTAGATATATGTTTATACTCGACTTAATGAATTCTTAACTGTGTGGCTAAGCATCTCTAATGTCATCATGTTTACTAGTAATTTTGCTTATCTTAGAAACTTCTTTTTTTTtACTTGCCTTGAGGGGTGTCATAACTCTAATTGATCTTACCTACCTTTATTCTCTATATTTCGTACTTTCTTCCTTCTCAAGTTGATAAAACCGTTTCTCTTCATGCCTCTAGATAGCCAACACATCATCAGTGAACTAAAGTAAAACTATGTGTTGTTTTCTTCTCTGCCTGCTGATTGTTTTTGTCATAGCACTTGTCTTGTTTGATTCTTGCATGTTGATTGTTTCTGTCATAACACTTCTCTTTCTATGTAAGACCTCATCCAAATGAATGCTCTGGAAGCGATCTAGATGGTGATATTTACTTCGTCTGTTGGGACCCTGATTTGATTCCACCTCAACAAGTTGAACCAATGGATTATACCCCTGTACCTAGCCAAGTACTAGATCATGATGTCACAATGGAGGTATGGTTTACAAGTGAACTTTGAACTGTTGTTATCATCAACAAGTATTTTAGAGGAAAAAGGTTGTTCTATAGTGTAAATGTTGTAATGCAGGAGGTCCAGGAGTATTTTGCAAATTATATGGTCAATGACAGTTTAGGAATCATTGCCAATGCTCATACAGCTTTTGCAGATAAAGAGCCAAAGAAAGCAATGAGCAATCCTTGTATACAGCTCGCAAAaCTATTCTCAATTGCAGTCGACTTTCCGAAAACTGGAGTCCCTGCTTTAATACCTGCTAATCTAAGAGTAAAAGAATATCCGGATTTCATGGATAAAGCCGACAAAGTGACATACGAGTCGGAGAATGTACTGGGGAAACTATTTAGAATGTTGGATAGCATTGGTCCAAACATTAAGAATATCAGGTCCTTCAACTATACGCCGGAGATGGCTCGGCAAGATTATGACCCTGACATGGAAGTTGAAGGTTTCGAGGAGTACCTCGACGATGCAATATATCACAAGAACAACTATGACATGAGGTTGGGAAATTTGATGCACTATCATAAGATCAAAACTGAGGCGGAATTGATCAGTGGTGGTAGTTTGACGTCATCATTATCTTTCACCATGAAAAATGAAGCGGAATCGATTATCTTGGCTGTGAAGTCGCTGCGAAAGGAGGCGAGGGGCTGGTTCAATGAGAAAGCAGACTTACATTATGGACATCATACTAATGTGTATGCAAGAGCTTCAGCATGGTATTTTGTTACATATCATCACACCTACTGGGGGTGGTCTGATGGCAGAAAGAATCATGGCCATTTTCTTAGCTTTCCATGGTGTGTTTATGATAAACTCATCCGTATCAAGCACCGCAAAATTAATTGTAGAGCTCGCTATTGA

mRNA sequence

GCCCCCAATTATGGAATTATATCTCTTCATTCCTCCATTTTCGTTTCTCCATTCCCCAACTCTCCTATTTTGCACTACACTGTTCTCTACTGCCTTCTGCATCCTCTTTTCATGAATCAATCTGCTTGAAAGAAGTTCGGAGTTGATTTTTCTTGGATTGGATGGGTAAAACAATTCAGCTTTTTGGATTCCCTTCTGGTGTATTGCAAGAATCAGTTAAGACGTTTGTAGAGGGAATTACAGGCACAGGAACTATTGATGCCATAAATACGAAACGTTCGAAGGGAGGAGGAAGACGAGTGTATGCTATCATCCAGTTTACTGATGAAGAAGGTGCTAAGTCAATTATATCTAAGGCTACTGAACGCCTTTGTTATGGTACTTCTTATCTGAAGGCAAGGGAGATGAAACATGATATTCTACCAGATCCGCTTGTCTTTGATTACAACTTCAAAGCTCTAAGACTACATCTTGGCTGTCAGATATCAAAGGAAAGTTTTTCCGTGTTATGGACAGAGTCGAATGTTTCTGTAGATTTCGGGTTTGAGCTGCGCAAGCTTTATTTCTTCATATCCTATCCTCGTGTTGACTACATGCTCGTATTGCGCTACGAGAACATTTGGCAGGTTGAGTTACACAAGCCACATGGTCAATCTGTAGATTATCTTCTGATTCAGTTATTTGGTGCTCCACGGATTTATGAAAGAGATGCAAGGTCTTTTGGACTCATTACTGAAGACCCTTTCTTAAACTTTTCCACGGAAATTGACACCCAATGGTTTCGAGCAACTGATTTTACTCCATCATGTAGTATTGGACAATCTGCTGCTTTATGCTTGGAGATTCCCTACGGTCGCCAGCTCCCTAATTTTCATGATAAATTTGCTTACTTCAAAGAAATCAAGGGTAAATTTACATTGGTCAGTGGTTCTACTTATTCCTCCAATGTAAACTTGGTACCTGTAGTTACACCTCCTCGAACCATCAACTTGCCATATACAATTTTGTTTAAGATAAATTTGTTGGTACAACAAGGATGTCTTCCAGGCCCAGCTCTTGATATTAGTTTCTATCAGATGGTAGATTCTCAGATATACAATACTGCCGTCATAGATCATGCGTTAAAGAAACTTCTCCACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGATGAGGAATACAGAAAGTACTTCAAATTAAAGAATCCCCCCCAGCCACCTATTTTGACCTTGAATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTGACACCTTGTAAAGTTTACTTTTGTGGTCCAGAAGTTAACATTTCAAATCGTGTATTACGCCGGTATCCTGACTACATTGACAACTTTTTGCGTGTTTCATTTGTTGACGAGGAATTGGGTAAAATGTATTCAACTGAGTTGTCTCCACGTGCATCTTCTTCTTTGGAGGATGGAAAGACAAAAATTTTTAAACGGATTCTTTCAGTTCTAAGAGATGGCATCACTATTGGTGATAAGAAGTTTGAGTTTCTAGCTTATTCATCTAGTCAATTACGGGAAAATGCTGCATGGATGTTTGCTCCAAAAAATGAACTTACTGCAGCTAAAATAAGGCAATGGATGGGAGATTTTCATAATATACGAAATGTAGCCAAGTATGCTGCTAGACTAGGCCAATCCTTTGGTTCATCAACAGAAACTTTAAGTGTCAGTAGACGTGAAGTTAAAGTTATTCCTGATATTGAAGTTGAATCAGGTAGTGGTGTCAATTATGTCTTCTCTGATGGTATTGGGAAAATAGCAGCTAGTTTTGCTAGAAAAGTGGCTAAAAAATGTGGGATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCTGTTGATCCTACCTCATCAGTAAAATTATCGCTAAGGAACAGCATGCTCAAGTATGAATCAACAGACACGAAGCTTGATGTTTTATCATGGAGTAAATATCATCCTTGCTTTCTAAATCGTCAGTTGATTACTCTTTTGTCTACACTTGGAGTTCAGGATCATGTTTTTGAGAGTAAACAACAGGAGTTGATTGATGAATTGGACACCATTTTTAGTGATCCATTGAAGGCTCAGCAGGCTCTTGAGCTAATGTCTCCAGGAGAGAATACCAAGATACTTAAGGAAATGATGTTGTGCGGTTACAAACCTGATTCTGAACCTTTCTTAAGAATGATGTTGCACACATTCAGAGAATCAAAGTTGATGGAATTGCGAATGAAGTCAAGGATCTTCATTCCAAATGGAAGAGCAATGATGGGATGTCTCGACGAAACAAGAAACTTGGAATATGGGGAGGTATTTGTGCAGTGTTCTGCACATCAGCAGCTGCATGACGATCGCGTAATCTTTAAGAGAATAAAATCGAACCGGCATTTCATTGTAACTGGAACAGTTGTAGTGGCCAAAAACCCCTGCTTGCACCCAGGTGATGTGCGCGTTTTAACAGCCGTGGATGTACCATCACTGCATCACATGATAGATTGTGTGGTTTTTCCACAAAAAGGGTCAAGACCTCATCCAAATGAATGCTCTGGAAGCGATCTAGATGGTGATATTTACTTCGTCTGTTGGGACCCTGATTTGATTCCACCTCAACAAGTTGAACCAATGGATTATACCCCTGTACCTAGCCAAGTACTAGATCATGATGTCACAATGGAGGAGGTCCAGGAGTATTTTGCAAATTATATGGTCAATGACAGTTTAGGAATCATTGCCAATGCTCATACAGCTTTTGCAGATAAAGAGCCAAAGAAAGCAATGAGCAATCCTTGTATACAGCTCGCAAAACTATTCTCAATTGCAGTCGACTTTCCGAAAACTGGAGTCCCTGCTTTAATACCTGCTAATCTAAGAGTAAAAGAATATCCGGATTTCATGGATAAAGCCGACAAAGTGACATACGAGTCGGAGAATGTACTGGGGAAACTATTTAGAATGTTGGATAGCATTGGTCCAAACATTAAGAATATCAGGTCCTTCAACTATACGCCGGAGATGGCTCGGCAAGATTATGACCCTGACATGGAAGTTGAAGGTTTCGAGGAGTACCTCGACGATGCAATATATCACAAGAACAACTATGACATGAGGTTGGGAAATTTGATGCACTATCATAAGATCAAAACTGAGGCGGAATTGATCAGTGGTGGTAGTTTGACGTCATCATTATCTTTCACCATGAAAAATGAAGCGGAATCGATTATCTTGGCTGTGAAGTCGCTGCGAAAGGAGGCGAGGGGCTGGTTCAATGAGAAAGCAGACTTACATTATGGACATCATACTAATGTGTATGCAAGAGCTTCAGCATGGTATTTTGTTACATATCATCACACCTACTGGGGGTGGTCTGATGGCAGAAAGAATCATGGCCATTTTCTTAGCTTTCCATGGTGTGTTTATGATAAACTCATCCGTATCAAGCACCGCAAAATTAATTGTAGAGCTCGCTATTGA

Coding sequence (CDS)

ATGGGTAAAACAATTCAGCTTTTTGGATTCCCTTCTGGTGTATTGCAAGAATCAGTTAAGACGTTTGTAGAGGGAATTACAGGCACAGGAACTATTGATGCCATAAATACGAAACGTTCGAAGGGAGGAGGAAGACGAGTGTATGCTATCATCCAGTTTACTGATGAAGAAGGTGCTAAGTCAATTATATCTAAGGCTACTGAACGCCTTTGTTATGGTACTTCTTATCTGAAGGCAAGGGAGATGAAACATGATATTCTACCAGATCCGCTTGTCTTTGATTACAACTTCAAAGCTCTAAGACTACATCTTGGCTGTCAGATATCAAAGGAAAGTTTTTCCGTGTTATGGACAGAGTCGAATGTTTCTGTAGATTTCGGGTTTGAGCTGCGCAAGCTTTATTTCTTCATATCCTATCCTCGTGTTGACTACATGCTCGTATTGCGCTACGAGAACATTTGGCAGGTTGAGTTACACAAGCCACATGGTCAATCTGTAGATTATCTTCTGATTCAGTTATTTGGTGCTCCACGGATTTATGAAAGAGATGCAAGGTCTTTTGGACTCATTACTGAAGACCCTTTCTTAAACTTTTCCACGGAAATTGACACCCAATGGTTTCGAGCAACTGATTTTACTCCATCATGTAGTATTGGACAATCTGCTGCTTTATGCTTGGAGATTCCCTACGGTCGCCAGCTCCCTAATTTTCATGATAAATTTGCTTACTTCAAAGAAATCAAGGGTAAATTTACATTGGTCAGTGGTTCTACTTATTCCTCCAATGTAAACTTGGTACCTGTAGTTACACCTCCTCGAACCATCAACTTGCCATATACAATTTTGTTTAAGATAAATTTGTTGGTACAACAAGGATGTCTTCCAGGCCCAGCTCTTGATATTAGTTTCTATCAGATGGTAGATTCTCAGATATACAATACTGCCGTCATAGATCATGCGTTAAAGAAACTTCTCCACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGATGAGGAATACAGAAAGTACTTCAAATTAAAGAATCCCCCCCAGCCACCTATTTTGACCTTGAATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTGACACCTTGTAAAGTTTACTTTTGTGGTCCAGAAGTTAACATTTCAAATCGTGTATTACGCCGGTATCCTGACTACATTGACAACTTTTTGCGTGTTTCATTTGTTGACGAGGAATTGGGTAAAATGTATTCAACTGAGTTGTCTCCACGTGCATCTTCTTCTTTGGAGGATGGAAAGACAAAAATTTTTAAACGGATTCTTTCAGTTCTAAGAGATGGCATCACTATTGGTGATAAGAAGTTTGAGTTTCTAGCTTATTCATCTAGTCAATTACGGGAAAATGCTGCATGGATGTTTGCTCCAAAAAATGAACTTACTGCAGCTAAAATAAGGCAATGGATGGGAGATTTTCATAATATACGAAATGTAGCCAAGTATGCTGCTAGACTAGGCCAATCCTTTGGTTCATCAACAGAAACTTTAAGTGTCAGTAGACGTGAAGTTAAAGTTATTCCTGATATTGAAGTTGAATCAGGTAGTGGTGTCAATTATGTCTTCTCTGATGGTATTGGGAAAATAGCAGCTAGTTTTGCTAGAAAAGTGGCTAAAAAATGTGGGATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCTGTTGATCCTACCTCATCAGTAAAATTATCGCTAAGGAACAGCATGCTCAAGTATGAATCAACAGACACGAAGCTTGATGTTTTATCATGGAGTAAATATCATCCTTGCTTTCTAAATCGTCAGTTGATTACTCTTTTGTCTACACTTGGAGTTCAGGATCATGTTTTTGAGAGTAAACAACAGGAGTTGATTGATGAATTGGACACCATTTTTAGTGATCCATTGAAGGCTCAGCAGGCTCTTGAGCTAATGTCTCCAGGAGAGAATACCAAGATACTTAAGGAAATGATGTTGTGCGGTTACAAACCTGATTCTGAACCTTTCTTAAGAATGATGTTGCACACATTCAGAGAATCAAAGTTGATGGAATTGCGAATGAAGTCAAGGATCTTCATTCCAAATGGAAGAGCAATGATGGGATGTCTCGACGAAACAAGAAACTTGGAATATGGGGAGGTATTTGTGCAGTGTTCTGCACATCAGCAGCTGCATGACGATCGCGTAATCTTTAAGAGAATAAAATCGAACCGGCATTTCATTGTAACTGGAACAGTTGTAGTGGCCAAAAACCCCTGCTTGCACCCAGGTGATGTGCGCGTTTTAACAGCCGTGGATGTACCATCACTGCATCACATGATAGATTGTGTGGTTTTTCCACAAAAAGGGTCAAGACCTCATCCAAATGAATGCTCTGGAAGCGATCTAGATGGTGATATTTACTTCGTCTGTTGGGACCCTGATTTGATTCCACCTCAACAAGTTGAACCAATGGATTATACCCCTGTACCTAGCCAAGTACTAGATCATGATGTCACAATGGAGGAGGTCCAGGAGTATTTTGCAAATTATATGGTCAATGACAGTTTAGGAATCATTGCCAATGCTCATACAGCTTTTGCAGATAAAGAGCCAAAGAAAGCAATGAGCAATCCTTGTATACAGCTCGCAAAaCTATTCTCAATTGCAGTCGACTTTCCGAAAACTGGAGTCCCTGCTTTAATACCTGCTAATCTAAGAGTAAAAGAATATCCGGATTTCATGGATAAAGCCGACAAAGTGACATACGAGTCGGAGAATGTACTGGGGAAACTATTTAGAATGTTGGATAGCATTGGTCCAAACATTAAGAATATCAGGTCCTTCAACTATACGCCGGAGATGGCTCGGCAAGATTATGACCCTGACATGGAAGTTGAAGGTTTCGAGGAGTACCTCGACGATGCAATATATCACAAGAACAACTATGACATGAGGTTGGGAAATTTGATGCACTATCATAAGATCAAAACTGAGGCGGAATTGATCAGTGGTGGTAGTTTGACGTCATCATTATCTTTCACCATGAAAAATGAAGCGGAATCGATTATCTTGGCTGTGAAGTCGCTGCGAAAGGAGGCGAGGGGCTGGTTCAATGAGAAAGCAGACTTACATTATGGACATCATACTAATGTGTATGCAAGAGCTTCAGCATGGTATTTTGTTACATATCATCACACCTACTGGGGGTGGTCTGATGGCAGAAAGAATCATGGCCATTTTCTTAGCTTTCCATGGTGTGTTTATGATAAACTCATCCGTATCAAGCACCGCAAAATTAATTGTAGAGCTCGCTATTGA

Protein sequence

MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAKSIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTESNVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIYERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY*
Homology
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BLAST of Cucsa.143700 vs. Swiss-Prot
Match: RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1353.6 bits (3502), Expect = 0.0e+00
Identity = 679/1118 (60.73%), Postives = 844/1118 (75.49%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            MGKTIQ+FGFP+GV  E VK F+E +TG+GT+ AI  ++ K GG RVYAI+QFT E   +
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
             II+ A ERL YG SYLKA E++ DI+P P    +    L++  GCQ+S + F  LW+  
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            +V V FG  +RKL+F  S+ + DY L L YENIWQ++LH P G+S  +L+IQ+ GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ERDARSFGLITEDPFLNFSTE-IDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHD 240
            E++ +   L+     ++F ++  D QW R TDFT S  IGQS A CLE+P    +P+F +
Sbjct: 181  EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240

Query: 241  KFAYFKEIKGK-FTLVSGSTYSSNVN-LVPVVTPPRTINLPYTILFKINLLVQQGCLPGP 300
             FA + E +   F + SGS+YSSN N LVPVV PP   +LP+ ILFK+N LVQ  CL GP
Sbjct: 241  NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300

Query: 301  ALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPIL 360
            ALD+ FY++++ + Y+ A+IDH L+KL HL ECCY P+ WL +EY+K+      P  P +
Sbjct: 301  ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 360

Query: 361  TLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTE 420
            +L++GLVY++RVQVTP +VYF GPEVN+SNRVLR Y  YI+NFLRVSFVDE+L K+ S +
Sbjct: 361  SLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMD 420

Query: 421  LSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELT 480
            LSPR+S+     +TK++ RI SVLRDGI IGDKKFEFLA+SSSQLREN+AWMFAP + +T
Sbjct: 421  LSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRIT 480

Query: 481  AAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVF 540
            AA IR WMGDF +IRNVAKYAARLGQSF SS ETL+V   E++VIPD+E+ S  G  YVF
Sbjct: 481  AAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS-LGTRYVF 540

Query: 541  SDGIGKIAASFARKVAKKCGIRH-TPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYE 600
            SDGIGKI+A FARKVA+KCG+   +PSAFQIRY G+KGV++VDP SS KLSLR SM K+E
Sbjct: 541  SDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 600

Query: 601  STDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQ 660
            S +TKLDVL+WSKY PC++NRQLITLLSTLGV D VFE KQ+E++D LD I + PL+A +
Sbjct: 601  SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 660

Query: 661  ALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMM 720
            AL LM+PGENT ILK ++LCGYKPD+EPFL MML  FR SKL+ELR K+RIFI  GR+MM
Sbjct: 661  ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 720

Query: 721  GCLDETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVR 780
            GCLDETR LEYG+V VQ S              ++  R FI+TG VVVAKNPCLHPGDVR
Sbjct: 721  GCLDETRTLEYGQVVVQYS------------DPMRPGRRFIITGPVVVAKNPCLHPGDVR 780

Query: 781  VLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 840
            VL AV+VP+L+HM+DCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +L+PP+  EPMDY
Sbjct: 781  VLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDY 840

Query: 841  TPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLF 900
            TP P+Q+LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFADKEP KA S+PCI+LAK F
Sbjct: 841  TPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKF 900

Query: 901  SIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIR 960
            S AVDFPKTGV A+IP +L VKEYPDFM+K DK TYES+NV+GKLFR +    P + +I+
Sbjct: 901  STAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIK 960

Query: 961  SFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGS 1020
            SF  T ++A + YD DMEV+GFEEY+D+A Y K NYD +LGNLM Y+ IKTEAE++SGG 
Sbjct: 961  SF--TLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGI 1020

Query: 1021 LTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHT 1080
            +  S SFT + +AESI  AV++LRKE    FN   +       N  A+ASAWY VTYH +
Sbjct: 1021 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EENESAKASAWYHVTYHSS 1080

Query: 1081 YWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRAR 1115
            YWG  +   N  HFLSF WCVYDKL+RIK   +  R R
Sbjct: 1081 YWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQR 1093

[Close]
BLAST of Cucsa.143700 vs. Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 911.4 bits (2354), Expect = 9.8e-264
Identity = 451/735 (61.36%), Postives = 571/735 (77.69%), Query Frame = 1 

Query: 376  VYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLEDGKTKIFK 435
            VYF GPE+N+SNRV+R +   I+NFLR+SFVDE+  K+ +T+LSPR++S  +  +T ++K
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 436  RILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVA 495
            R+LSVL DGITIG K FEFLA+SSSQLR+N+AWMFA +  L A+ IR WMGDF NIRNVA
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 496  KYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKK 555
            KYAARLGQSF SSTETL V + EV+ I DI+    +G  +VFSDGIGKI+++FA +VA K
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDIK----NGTQHVFSDGIGKISSAFANEVAMK 188

Query: 556  CGI-RHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLSWSKYHPCF 615
            C + R  PSAFQIRY G+KGV++VDPTS  KLSLR SMLK++S +  +DVL++SKY P F
Sbjct: 189  CNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGF 248

Query: 616  LNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALELMSPGENTKILKEMM 675
            LNRQLITLLSTLGV+D VFE KQ+E +++L+ + +DP  A +A+ELM  GE T  +KE++
Sbjct: 249  LNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELL 308

Query: 676  LCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFVQC 735
            LCGY+PD EP+L M+L TFR SKL+EL+ KSRI IP GRAMMGCLDETR L+YG+VF++ 
Sbjct: 309  LCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRA 368

Query: 736  SAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMIDCVV 795
            ++             +  N  F VTG VV+AKNPCLHPGD+R+L AVDVP LHHM +CVV
Sbjct: 369  TSG------------VNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 428

Query: 796  FPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEEVQ 855
            FPQ+G RPHPNECSGSDLDGDIYFV WDP LIPP+ V PMDYTP P++ LDHDVT+EEV+
Sbjct: 429  FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 488

Query: 856  EYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAVDFPKTGVPALIPAN 915
            EYF NY+VN+SLG+IANAH  FADKE  KA S+PCI+LAKLFSIAVDFPKTGVPALIP  
Sbjct: 489  EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 548

Query: 916  LRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNYTPEMARQDYDPDME 975
            L VKEYPDFM+K DKVTYES+ V+GKL+R +    P+IK     ++T E+AR+ YD DM 
Sbjct: 549  LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIK-----HFTREVARRSYDTDMI 608

Query: 976  VEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSSLSFTMKNEAESIIL 1035
            V+G+E+Y+ +A+  K+ YD +LGNLM ++ IK+EAE+ISG  L  + +FT K++A++I L
Sbjct: 609  VDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRL 668

Query: 1036 AVKSLRKEARGWFNEKADLHYGH-HTNVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSF 1095
            AV+SLRKEAR  F+E +    GH H    A+ASAWY VTYH  +WG  +      HF+SF
Sbjct: 669  AVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISF 722

Query: 1096 PWCVYDKLIRIKHRK 1109
            PWC+Y+KL+RIK R+
Sbjct: 729  PWCIYEKLLRIKQRR 722

[Close]
BLAST of Cucsa.143700 vs. Swiss-Prot
Match: RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)

HSP 1 Score: 729.2 bits (1881), Expect = 6.9e-209
Identity = 429/1127 (38.07%), Postives = 653/1127 (57.94%), Query Frame = 1 

Query: 4    TIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGR-RVYAIIQFTD-EEGAKS 63
            T+++   P  ++ + +  F+E   G  T+ A+    ++   + R +A +QFT  E  +++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   IISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKES-FSVLWTES 123
             +  +  +L + T  L+  E   DI+P P+        + L +G   S E  F  L    
Sbjct: 71   QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 124  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQS--VDYLLIQLFGAPR 183
             V      E R++ F++      Y + +R+E+I +      +G +  +D  L++L   P+
Sbjct: 131  GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190

Query: 184  IYERDARSFGLITEDPFLNFSTE-IDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNF 243
            +++R         +     F  E  D  W R TDF+ S SIG S   CLE+  G  + + 
Sbjct: 191  VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250

Query: 244  HDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRT-INLPYTILFKINLLVQ-QGCLP 303
                 Y++E     T V G T++S   +VP++      +  PY ILF++N LV  Q    
Sbjct: 251  FSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISL 310

Query: 304  GPALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFK-LKNPPQP 363
              A D+   +++      TA++   LKKL      CY+P  ++  + +   K +K+ P  
Sbjct: 311  FAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPAS 370

Query: 364  PILTLNE-GLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKM 423
                L E  ++   R  VTP K+Y  GPE+  +N V++ + +++ +F+RV+FV+E+  K+
Sbjct: 371  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 430

Query: 424  YSTELSPRASSS--LEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFA 483
             +  LS  +     ++  +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR N+ WMFA
Sbjct: 431  PANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 490

Query: 484  PKNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGS 543
               ++ A  IR+WMG F  IR+++K AAR+GQ F +S +TL V  ++V+ IPDIEV +  
Sbjct: 491  SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTT-D 550

Query: 544  GVNYVFSDGIGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNS 603
            G +Y FSDGIGKI+ +FA++VA+KCG+ H PSAFQIRY G+KGVI+VD +S  KLSLR+S
Sbjct: 551  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 610

Query: 604  MLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDP 663
            MLK++S +  L+V  W++  PCFLNR++I LLSTLG++D +FE+ Q   +  L  +  D 
Sbjct: 611  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 670

Query: 664  LKAQQALELMSPGENTK-ILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIP 723
              A   L+ +S GEN+K +L +M+L GY P SEP+L MML    ES+L EL+ + RI +P
Sbjct: 671  DAALNVLQKLS-GENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVP 730

Query: 724  NGRAMMGCLDETRNLEYGEVFVQ--CSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNP 783
             GR ++GC+DE   LEYG+V+V+   +  +    D+  F++I      +V G VVV KNP
Sbjct: 731  KGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETS-VVIGKVVVTKNP 790

Query: 784  CLHPGDVRVLTAVDVPSLHH--MIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLI 843
            CLHPGD+RVL A+          +DC++FPQKG RPHPNECSG DLDGD +FV WD  +I
Sbjct: 791  CLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKII 850

Query: 844  PPQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMS 903
            P +   PMDY     +++DHDVT+EE+ ++F +YM++D+LG+I+ AH   AD++P+KA S
Sbjct: 851  PSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARS 910

Query: 904  NPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLD 963
              C++LA L S AVDF KTG PA +P  L+ +E+PDF+++ +K TY SE+V GKL+R + 
Sbjct: 911  QKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVK 970

Query: 964  SIGPNIKNIRSFNYTPEMARQD---YDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYH 1023
            S     K        PE   +D   YD  +E  GFE +++ A  H++ Y  +L +LM Y+
Sbjct: 971  SSLAQRK--------PEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYY 1030

Query: 1024 KIKTEAELISGGSLTSSLSFTMKNE-----AESIILAVKSLRKEARGWFNEKADLHYGHH 1083
                E E+++G   T  +     N       + I L+VK L KEA GWF +  +      
Sbjct: 1031 GAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCE----DE 1090

Query: 1084 TNVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIK 1106
                  ASAWY+VTY+  +      R     FLSFPW V D L+ IK
Sbjct: 1091 QQKKKLASAWYYVTYNPNH------RDEKLTFLSFPWIVGDVLLDIK 1114

[Close]
BLAST of Cucsa.143700 vs. Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 695.3 bits (1793), Expect = 1.1e-198
Identity = 411/1117 (36.79%), Postives = 619/1117 (55.42%), Query Frame = 1 

Query: 11   PSGVLQESVKTFVEGITGTGTIDAINTKRS-KGGGRRVYAIIQFTDEEGAKSIISKATER 70
            PS V  E +  F   +   G   A     + +G   R +  +QF     A +    A+  
Sbjct: 19   PSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAGLASSG 78

Query: 71   LC--YGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTESNVSVDFG 130
                +  + L       D+LP             L +G ++++  F        V  +  
Sbjct: 79   RLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGVRAEVI 138

Query: 131  FELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIYERDARSF 190
               R++  ++ +    Y L + +E++         G     +L+QL  APRI+   +   
Sbjct: 139  PGKRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTLDGMGA--ILLQLNYAPRIHTAISGPA 198

Query: 191  --GLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDKFAYFK 250
                  +D F     +    W RA DFTP+ S G+ + L L++     + +      +  
Sbjct: 199  VNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLPFSG 258

Query: 251  EIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALDISFYQ 310
             + G+ T+ S     ++ N+VP+V  PR  ++PY +LF++N L+  G +    ++   ++
Sbjct: 259  NL-GELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFK 318

Query: 311  MVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLNEG--- 370
             +  Q     V     +K+  L+  CY P +++ +E     +  N     +L  NEG   
Sbjct: 319  AL--QELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHN-----VLLSNEGEGE 378

Query: 371  ----LVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTEL 430
                L+  +RV +TP K++  GPE  ++N V++ +  Y  +F+RV+FVDE+  K+ S  +
Sbjct: 379  GERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAI 438

Query: 431  SPRASSSL--EDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNEL 490
            S R       +  KT ++ RILS+L+ G +IG K FEFLA+S+SQLR N+ WMFA    L
Sbjct: 439  SARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASL 498

Query: 491  TAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYV 550
             A  IR+WMG F NIR+V+K AAR+GQ F SS +T  V R +V+VIPDIE+ +  G  Y+
Sbjct: 499  NAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITT-DGSKYI 558

Query: 551  FSDGIGKIAASFARKVAKKCGIRHT--PSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLK 610
            FSDGIGKI+  FA++VA   G+  T  PSAFQIRY G+KGVI++DP SS+ LSLR SM K
Sbjct: 559  FSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKK 618

Query: 611  YESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKA 670
            +ES    L++ SWSK  PC++NR++I+LLSTLG++D +F + QQ+ + E + + ++   A
Sbjct: 619  FESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVA 678

Query: 671  QQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRA 730
               L  +  G  TK   +M+L GY+P SEP+L M+L   +E++L ++R + +I +P GR 
Sbjct: 679  LSVLGKLG-GSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRV 738

Query: 731  MMGCLDETRNLEYGEVFVQCSAH-QQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPG 790
            ++GCLDET  LEYG+V+++ + + ++  D    +      +   V G V + KNPCLHPG
Sbjct: 739  LIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPG 798

Query: 791  DVRVLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEP 850
            D+RVL A+  P L  M+DC+VFPQ+G RPHPNECSG DLDGD+YF+ WD  LIP +   P
Sbjct: 799  DIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTP 858

Query: 851  MDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLA 910
            MDYT    +++DH VT+EE+Q++F +YM+NDSLG I+ AH   AD+ P KA S  C+QLA
Sbjct: 859  MDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLA 918

Query: 911  KLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIK 970
             L S+AVDF KTG PA +P  LR +EYPDFM++ +K  Y S  VLGKL+R          
Sbjct: 919  TLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSG 978

Query: 971  NIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELIS 1030
            +  + + +       YDPD+EV G +E+L  A  +   Y+ +L  LM+Y++ + E E+++
Sbjct: 979  DSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILT 1038

Query: 1031 GGSLTSSLSFTMKNE-----AESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAW 1090
            G      L     N+      + I+ AV +L +EARGW      L      +    ASAW
Sbjct: 1039 GNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWL-----LSSRKEEDASRMASAW 1098

Query: 1091 YFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIK 1106
            Y VTYH         R+    F SFPW   D L+ IK
Sbjct: 1099 YRVTYH-------PDRRRGKRFWSFPWIACDNLLAIK 1111

[Close]
BLAST of Cucsa.143700 vs. Swiss-Prot
Match: RDR6_ARATH (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 2.3e-156
Identity = 380/1020 (37.25%), Postives = 539/1020 (52.84%), Query Frame = 1 

Query: 143  DYMLVLRYENIWQVELHKP-HGQSVDYLLIQLFGAPRIYERDARSFGLITEDPFLNFSTE 202
            DY L L   +I  V  +K  HG     L++QL  +PR++ R A      T    L    +
Sbjct: 192  DYKLELLVRDIQTVRQYKTLHGF---VLILQLASSPRVWYRTADDDIYDTVPGDL---LD 251

Query: 203  IDTQWFRATDFTPSCSIGQ--SAALCLEIPYGRQLPNFHDKFAYFKEIKGKFTLVSGSTY 262
             D  W R TDFT   +IG+  S  + +   Y  +L    D   YF+              
Sbjct: 252  DDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALD---YFR-------------- 311

Query: 263  SSNVNLVPVVTPPRTINLP--------------------YTILFKINLLVQQGCLPGPAL 322
               V    V  PPR  N P                    + I+F +N ++ +G      L
Sbjct: 312  MRRVQEERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQL 371

Query: 323  DISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTL 382
               F+ ++ +Q  +  +   +LK L   K   ++  K L  +  + +  KNP        
Sbjct: 372  TERFFDLLRNQPKDVNIA--SLKHLCTYKRPVFDAYKRL--KLVQEWIQKNPKLLGSHEQ 431

Query: 383  NEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELS 442
            +E +  + R+ +TP + Y   PEV +SNRVLRRY    + FLRV+F+DE +  + S  LS
Sbjct: 432  SEDISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLS 491

Query: 443  PRASSSLED-------GKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAP 502
               +  ++D        KT +FKR+ S+L DG  +  +K+ FLA+S++QLR+ +AW FA 
Sbjct: 492  YFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAE 551

Query: 503  KNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKV-IPDIEVESGS 562
              +   + I+ WMG F + +NVAK AAR+G  F S+  T+ V   EV   +PDIE     
Sbjct: 552  DGKTRVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG-- 611

Query: 563  GVNYVFSDGIGKIAASFARKVAKKC--GIRHTPSAFQIRYAGFKGVISVDPTSS--VKLS 622
               YVFSDGIG I    A +V +K    + ++P A+QIRYAGFKGV++  P+ S  ++L+
Sbjct: 612  ---YVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLA 671

Query: 623  LRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTI 682
            LR+SM K+ S  T L++ SW+++ P FLNRQ+ITLLS LGV D +F   Q+ ++ +L+ I
Sbjct: 672  LRDSMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRI 731

Query: 683  FSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRI 742
              D   A + L   S  E       M+  G+KP +EP LR ML + R ++L  LR KSRI
Sbjct: 732  LDDTDVAFEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRI 791

Query: 743  FIPNGRAMMGCLDETRNLEYGEVFVQCSAHQ-----QLHDDRVIFKRIKSNRHFIVTGTV 802
            F+ +GR +MGCLDE   LE+G+ F+Q S          H  R  FK  K++   +V G V
Sbjct: 792  FVTSGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSR--FKETKTDLE-VVKGYV 851

Query: 803  VVAKNPCLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD 862
             +AKNPCLHPGDVR+L AVDVP LHHM DC++FPQKG RPH NE SGSDLDGD+YFV WD
Sbjct: 852  AIAKNPCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWD 911

Query: 863  PDLIPP--QQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKE 922
              LIPP  +    M Y     + L   V  +++ ++FA  + N+ LG I NAH   AD+ 
Sbjct: 912  QKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRS 971

Query: 923  PKKAMSNPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGK 982
               AM   C+ LA+L + AVDFPKTG    +P +L+ K YPDFM K D  TY+S  +LG+
Sbjct: 972  EYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGR 1031

Query: 983  LFRMLDSIGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLM 1042
            L+R +  +        S   T   A   YD  +E+ GFE+ + +A  HK  YD +L  L+
Sbjct: 1032 LYRRVKEVYDEDAEASSEESTDPSA-IPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLL 1091

Query: 1043 HYHKIKTEAELISGGSLTSSLSFTMKNEA---ESIILAVKSLRKEARGWFNEKADLHYG- 1102
              +K++ E E+++ G + S   +T K +    E +  +  SL+KE R  F E    H   
Sbjct: 1092 GQYKVQKEEEIVT-GHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENL 1151

Query: 1103 --HHTNVY--ARASAWYFVTYHHTYWGWS-----DGRKNHGHFLSFPWCVYDKLIRIKHR 1108
                 N+    +ASAWY VTYH  +   S         +H   LSF W   D L RIK R
Sbjct: 1152 SEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIR 1172

[Close]
BLAST of Cucsa.143700 vs. TrEMBL
Match: E9NWK7_CUCSA (RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=Csa_5G239640 PE=2 SV=1)

HSP 1 Score: 2276.9 bits (5899), Expect = 0.0e+00
Identity = 1115/1115 (100.00%), Postives = 1115/1115 (100.00%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
            SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240
            ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360
            ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480
            RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540
            IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600
            IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720
            MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900
            SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960
            DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020
            TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080
            LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1116
            SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]
BLAST of Cucsa.143700 vs. TrEMBL
Match: H3K3Y9_CUCSA (RNA-dependent RNA polymerase 1 OS=Cucumis sativus GN=RDR1 PE=2 SV=1)

HSP 1 Score: 2263.8 bits (5865), Expect = 0.0e+00
Identity = 1109/1115 (99.46%), Postives = 1111/1115 (99.64%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
            SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            NVSVDFGF++RKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240
            ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEI YGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360
            ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480
            RASSSLEDGKTKI KRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK
Sbjct: 421  RASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540
            IRQWMGDFHNIRNVAKYAARLGQ FGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600
            IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720
            MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETRNLEYGEVF QCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900
            SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960
            DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020
            TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080
            LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1116
            SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]
BLAST of Cucsa.143700 vs. TrEMBL
Match: A0A0S1YCZ7_CUCSA (RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=RDR1b PE=2 SV=1)

HSP 1 Score: 2263.4 bits (5864), Expect = 0.0e+00
Identity = 1111/1115 (99.64%), Postives = 1111/1115 (99.64%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
            SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240
            ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360
            ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPS WLDEEYRKYFKLKNPPQPPILTLN
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSIWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRR PDYIDNFLRVSFVDEELGKMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRCPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480
            RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540
            IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600
            IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLIT LSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITFLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720
            MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900
            SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960
            DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020
            TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080
            LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1116
            SDGRKNHGHFLSFP CVYDKLIRIKHRKINCRARY
Sbjct: 1081 SDGRKNHGHFLSFPRCVYDKLIRIKHRKINCRARY 1115

[Close]
BLAST of Cucsa.143700 vs. TrEMBL
Match: B9HJH7_POPTR (RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s13550g PE=4 SV=1)

HSP 1 Score: 1464.9 bits (3791), Expect = 0.0e+00
Identity = 716/1111 (64.45%), Postives = 871/1111 (78.40%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            M KT+++ GFPS     +V+ F+E  TG GT++A+  +  + GG R YAI+QFT    A+
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
             IIS A  RL YG SYL AR M  DI+P P  F +  +++ LH G Q SKE FS +W+ +
Sbjct: 61   QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            NVSV+FG  +RKL+FF+S+   +Y L L +ENIWQ+ELH+P GQ+V YLLIQL+GAPRIY
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDARSFGLITEDPFLNFSTEI-DTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHD 240
            ERD  S   + EDP LN+  ++ D QW R TDFTPSC IG S++LCLE+P   QLPNF++
Sbjct: 181  ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240

Query: 241  KFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPAL 300
             F Y+KE +G F L SG T+S N +LVP+V P   +NLPY ILF++NLLVQ GCL G  L
Sbjct: 241  NFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSML 300

Query: 301  DISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTL 360
            D  FY++VD        I++AL+KL HLKECCY PSKW +E+Y+KY    NPP+ P+L+L
Sbjct: 301  DDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSL 360

Query: 361  NEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELS 420
            + GLVYV++VQ+TPCKV+FCGPEVN+SNRVLR+Y + IDNFLRVSFVDEEL K++ST++S
Sbjct: 361  DAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVS 420

Query: 421  PRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAA 480
            PR SS  E  +T I+ RILS L++GI IGDKKFEFLA+SSSQLREN+ WMFA +  LTAA
Sbjct: 421  PRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAA 480

Query: 481  KIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSD 540
             IR WMG FH IRNVA+YAARLGQSFGSSTETLSVS  E+++IPDIEV  G G  Y+FSD
Sbjct: 481  DIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRG-GTRYLFSD 540

Query: 541  GIGKIAASFARKVAKKCGIR-HTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
            GIGKI+A FARKVA KCG +  TPSAFQIRYAG+KGV++VDPTSS KLSLR SM KYES 
Sbjct: 541  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 600

Query: 601  DTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQAL 660
            +TKLDVL+ SKY PCFLNRQLITLLSTLGV DH FE KQ+E +D+LD + +DPL+AQ+AL
Sbjct: 601  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 660

Query: 661  ELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGC 720
            ELMSPGENT ILKEM+LCGY+PD+EPFL MML TFR SKL+ELR K+RIFIPNGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 720

Query: 721  LDETRNLEYGEVFVQCSA--HQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVR 780
            LDETR LE+G+VFV+ S    + L+D   +F      + +++ G+VVVAKNPCLHPGD+R
Sbjct: 721  LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 780

Query: 781  VLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 840
            +L AVDVP+LHHM+DCVVFPQKG RPHPNECSGSDLDGDIYFVCWDP+LIP QQ+ PMDY
Sbjct: 781  ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 840

Query: 841  TPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLF 900
            TP P   LDHDVT+EEV+EYF NY+VNDSLG+IANAHTA ADKE  KAMS PC++LA+ F
Sbjct: 841  TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 900

Query: 901  SIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIR 960
            SIAVDFPKTGVPA IP+NLR +EYPDFM+K DK +YES NV+GKLFR +  I P   +IR
Sbjct: 901  SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 960

Query: 961  SFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGS 1020
            SF  T ++ARQ YDPDMEV+GFE+Y+DDA Y+K+NYD +LGNLM Y+ IKTEAEL+SG  
Sbjct: 961  SF--TSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1020

Query: 1021 LTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHT 1080
            +  S SFT K +AE+I +AV+SL+KEAR WFNEK         +V A+ASAWY VTYHH 
Sbjct: 1021 MKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1080

Query: 1081 YWGWSDGRKNHGHFLSFPWCVYDKLIRIKHR 1108
            YWG  +   N  HFLSFPWCVYDKLI+IK R
Sbjct: 1081 YWGCYNEGMNRDHFLSFPWCVYDKLIQIKRR 1108

[Close]
BLAST of Cucsa.143700 vs. TrEMBL
Match: A0A061EGF4_THECC (RNA-dependent RNA polymerase 1 isoform 1 OS=Theobroma cacao GN=TCM_011292 PE=4 SV=1)

HSP 1 Score: 1439.5 bits (3725), Expect = 0.0e+00
Identity = 715/1114 (64.18%), Postives = 871/1114 (78.19%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            MGKTIQ+  FPS V  E VKTF+E  TG  T+ A+  ++ K GGR  YAI+QFT    A+
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGGR-AYAIVQFTKSTDAE 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
             II    +RL YG+SYLKAREM++DI+P P  F +  + + LH GCQ+S E F VLW E 
Sbjct: 61   LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEV 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            +V+V+FG  +RKL F +S+  V+Y L L YENIWQ+ELH+P  Q+  YLLIQLFGAPRIY
Sbjct: 121  DVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIY 180

Query: 181  ERDARSFGLITEDPFLNFSTEI-DTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHD 240
            E+D RS GL+ E+P LN+  ++ D QW R TDFT S  IGQS+ LCLE+PY  QLPNF +
Sbjct: 181  EKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRE 240

Query: 241  KFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPAL 300
             FAY+KE +GKF L SGS+YS N+NLVP+V P   I+LPY ILFKINLLVQ GC+PGPAL
Sbjct: 241  NFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPAL 300

Query: 301  DISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTL 360
            D +FY++V+    +   IDHAL+KL +LKECC+ PSKWL E+Y+ Y   K  P  P+++L
Sbjct: 301  DANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISL 360

Query: 361  NEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELS 420
            ++GLV V RVQ+TP +VYFCGPE+N+SNRVLR + D IDNFLR++FVDEEL K++ST+L 
Sbjct: 361  DDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLL 420

Query: 421  PRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAA 480
             R      +  T+I+ RILS L++GI IGDK+FEFLA+SSSQLREN+AWMFA +  LTAA
Sbjct: 421  TR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAA 480

Query: 481  KIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSD 540
             IR WMG+F  IRNVAKYAARLGQSF SSTETLSV++ E+++I D+E++   G+NYVFSD
Sbjct: 481  DIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKR-DGINYVFSD 540

Query: 541  GIGKIAASFARKVAKKCGIR-HTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
            GIGKI+A FA+KVA KC +   TPSAFQIR  GFKGV++VDPTSS KLSLR SM KYES 
Sbjct: 541  GIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESE 600

Query: 601  DTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQAL 660
            +TKLDVL+WSKY PCFLNRQLITLLSTLGV DH FE KQ+E++D+L+ I +DPLKAQ+AL
Sbjct: 601  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEAL 660

Query: 661  ELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGC 720
            ELMSPGENT ILKEM+LCGY+PD+EPFL MML TFR SKL+ELR KSRIF+ NGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGC 720

Query: 721  LDETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVL 780
            LDETR L+YG+VFVQ S               +S + FIV G VVVAKNPCLHPGDVRVL
Sbjct: 721  LDETRTLDYGQVFVQVSGS-------------RSEQRFIVQGKVVVAKNPCLHPGDVRVL 780

Query: 781  TAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
            TAV+VP LHHM+DCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDP+LIP +Q+ PMDY+P
Sbjct: 781  TAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSP 840

Query: 841  VPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSI 900
             P++ L+H+VT+EEV+EYF NY+VNDSLGIIANAHT FAD+EP+KAMS+ C  LAKLFSI
Sbjct: 841  APTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSI 900

Query: 901  AVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSF 960
            AVDFPKTGVPA IP  LRVKEYPDFM+K DK TY+S NV+GKLFR +  + PN   IRS 
Sbjct: 901  AVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSL 960

Query: 961  NYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLT 1020
              T E   + YDPDMEV+G+E+Y+DDA YHK+NYD +LGNLM Y+ IKTEAE++SGG + 
Sbjct: 961  --TRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMK 1020

Query: 1021 SSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYW 1080
             S SFT + +AE+I +AV+SLRKEAR WFNEK +       ++YA+ASAWY VTYH +YW
Sbjct: 1021 MSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYW 1080

Query: 1081 GWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCR 1113
            G  +   N  HFLSFPWCVYDKLI IK +K+  R
Sbjct: 1081 GLYNEGMNRNHFLSFPWCVYDKLILIK-KKVTSR 1090

[Close]
BLAST of Cucsa.143700 vs. TAIR10
Match: AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)

HSP 1 Score: 1353.6 bits (3502), Expect = 0.0e+00
Identity = 679/1118 (60.73%), Postives = 844/1118 (75.49%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            MGKTIQ+FGFP+GV  E VK F+E +TG+GT+ AI  ++ K GG RVYAI+QFT E   +
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
             II+ A ERL YG SYLKA E++ DI+P P    +    L++  GCQ+S + F  LW+  
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            +V V FG  +RKL+F  S+ + DY L L YENIWQ++LH P G+S  +L+IQ+ GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ERDARSFGLITEDPFLNFSTE-IDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHD 240
            E++ +   L+     ++F ++  D QW R TDFT S  IGQS A CLE+P    +P+F +
Sbjct: 181  EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240

Query: 241  KFAYFKEIKGK-FTLVSGSTYSSNVN-LVPVVTPPRTINLPYTILFKINLLVQQGCLPGP 300
             FA + E +   F + SGS+YSSN N LVPVV PP   +LP+ ILFK+N LVQ  CL GP
Sbjct: 241  NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300

Query: 301  ALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPIL 360
            ALD+ FY++++ + Y+ A+IDH L+KL HL ECCY P+ WL +EY+K+      P  P +
Sbjct: 301  ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 360

Query: 361  TLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTE 420
            +L++GLVY++RVQVTP +VYF GPEVN+SNRVLR Y  YI+NFLRVSFVDE+L K+ S +
Sbjct: 361  SLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMD 420

Query: 421  LSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELT 480
            LSPR+S+     +TK++ RI SVLRDGI IGDKKFEFLA+SSSQLREN+AWMFAP + +T
Sbjct: 421  LSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRIT 480

Query: 481  AAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVF 540
            AA IR WMGDF +IRNVAKYAARLGQSF SS ETL+V   E++VIPD+E+ S  G  YVF
Sbjct: 481  AAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS-LGTRYVF 540

Query: 541  SDGIGKIAASFARKVAKKCGIRH-TPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYE 600
            SDGIGKI+A FARKVA+KCG+   +PSAFQIRY G+KGV++VDP SS KLSLR SM K+E
Sbjct: 541  SDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 600

Query: 601  STDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQ 660
            S +TKLDVL+WSKY PC++NRQLITLLSTLGV D VFE KQ+E++D LD I + PL+A +
Sbjct: 601  SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 660

Query: 661  ALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMM 720
            AL LM+PGENT ILK ++LCGYKPD+EPFL MML  FR SKL+ELR K+RIFI  GR+MM
Sbjct: 661  ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 720

Query: 721  GCLDETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVR 780
            GCLDETR LEYG+V VQ S              ++  R FI+TG VVVAKNPCLHPGDVR
Sbjct: 721  GCLDETRTLEYGQVVVQYS------------DPMRPGRRFIITGPVVVAKNPCLHPGDVR 780

Query: 781  VLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 840
            VL AV+VP+L+HM+DCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +L+PP+  EPMDY
Sbjct: 781  VLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDY 840

Query: 841  TPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLF 900
            TP P+Q+LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFADKEP KA S+PCI+LAK F
Sbjct: 841  TPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKF 900

Query: 901  SIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIR 960
            S AVDFPKTGV A+IP +L VKEYPDFM+K DK TYES+NV+GKLFR +    P + +I+
Sbjct: 901  STAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIK 960

Query: 961  SFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGS 1020
            SF  T ++A + YD DMEV+GFEEY+D+A Y K NYD +LGNLM Y+ IKTEAE++SGG 
Sbjct: 961  SF--TLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGI 1020

Query: 1021 LTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHT 1080
            +  S SFT + +AESI  AV++LRKE    FN   +       N  A+ASAWY VTYH +
Sbjct: 1021 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EENESAKASAWYHVTYHSS 1080

Query: 1081 YWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRAR 1115
            YWG  +   N  HFLSF WCVYDKL+RIK   +  R R
Sbjct: 1081 YWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQR 1093

[Close]
BLAST of Cucsa.143700 vs. TAIR10
Match: AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)

HSP 1 Score: 729.2 bits (1881), Expect = 3.9e-210
Identity = 429/1127 (38.07%), Postives = 653/1127 (57.94%), Query Frame = 1 

Query: 4    TIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGR-RVYAIIQFTD-EEGAKS 63
            T+++   P  ++ + +  F+E   G  T+ A+    ++   + R +A +QFT  E  +++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   IISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKES-FSVLWTES 123
             +  +  +L + T  L+  E   DI+P P+        + L +G   S E  F  L    
Sbjct: 71   QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 124  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQS--VDYLLIQLFGAPR 183
             V      E R++ F++      Y + +R+E+I +      +G +  +D  L++L   P+
Sbjct: 131  GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190

Query: 184  IYERDARSFGLITEDPFLNFSTE-IDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNF 243
            +++R         +     F  E  D  W R TDF+ S SIG S   CLE+  G  + + 
Sbjct: 191  VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250

Query: 244  HDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRT-INLPYTILFKINLLVQ-QGCLP 303
                 Y++E     T V G T++S   +VP++      +  PY ILF++N LV  Q    
Sbjct: 251  FSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISL 310

Query: 304  GPALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFK-LKNPPQP 363
              A D+   +++      TA++   LKKL      CY+P  ++  + +   K +K+ P  
Sbjct: 311  FAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPAS 370

Query: 364  PILTLNE-GLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKM 423
                L E  ++   R  VTP K+Y  GPE+  +N V++ + +++ +F+RV+FV+E+  K+
Sbjct: 371  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 430

Query: 424  YSTELSPRASSS--LEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFA 483
             +  LS  +     ++  +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR N+ WMFA
Sbjct: 431  PANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 490

Query: 484  PKNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGS 543
               ++ A  IR+WMG F  IR+++K AAR+GQ F +S +TL V  ++V+ IPDIEV +  
Sbjct: 491  SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTT-D 550

Query: 544  GVNYVFSDGIGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNS 603
            G +Y FSDGIGKI+ +FA++VA+KCG+ H PSAFQIRY G+KGVI+VD +S  KLSLR+S
Sbjct: 551  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 610

Query: 604  MLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDP 663
            MLK++S +  L+V  W++  PCFLNR++I LLSTLG++D +FE+ Q   +  L  +  D 
Sbjct: 611  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 670

Query: 664  LKAQQALELMSPGENTK-ILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIP 723
              A   L+ +S GEN+K +L +M+L GY P SEP+L MML    ES+L EL+ + RI +P
Sbjct: 671  DAALNVLQKLS-GENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVP 730

Query: 724  NGRAMMGCLDETRNLEYGEVFVQ--CSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNP 783
             GR ++GC+DE   LEYG+V+V+   +  +    D+  F++I      +V G VVV KNP
Sbjct: 731  KGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETS-VVIGKVVVTKNP 790

Query: 784  CLHPGDVRVLTAVDVPSLHH--MIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLI 843
            CLHPGD+RVL A+          +DC++FPQKG RPHPNECSG DLDGD +FV WD  +I
Sbjct: 791  CLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKII 850

Query: 844  PPQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMS 903
            P +   PMDY     +++DHDVT+EE+ ++F +YM++D+LG+I+ AH   AD++P+KA S
Sbjct: 851  PSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARS 910

Query: 904  NPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLD 963
              C++LA L S AVDF KTG PA +P  L+ +E+PDF+++ +K TY SE+V GKL+R + 
Sbjct: 911  QKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVK 970

Query: 964  SIGPNIKNIRSFNYTPEMARQD---YDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYH 1023
            S     K        PE   +D   YD  +E  GFE +++ A  H++ Y  +L +LM Y+
Sbjct: 971  SSLAQRK--------PEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYY 1030

Query: 1024 KIKTEAELISGGSLTSSLSFTMKNE-----AESIILAVKSLRKEARGWFNEKADLHYGHH 1083
                E E+++G   T  +     N       + I L+VK L KEA GWF +  +      
Sbjct: 1031 GAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCE----DE 1090

Query: 1084 TNVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIK 1106
                  ASAWY+VTY+  +      R     FLSFPW V D L+ IK
Sbjct: 1091 QQKKKLASAWYYVTYNPNH------RDEKLTFLSFPWIVGDVLLDIK 1114

[Close]
BLAST of Cucsa.143700 vs. TAIR10
Match: AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)

HSP 1 Score: 554.7 bits (1428), Expect = 1.3e-157
Identity = 380/1020 (37.25%), Postives = 539/1020 (52.84%), Query Frame = 1 

Query: 143  DYMLVLRYENIWQVELHKP-HGQSVDYLLIQLFGAPRIYERDARSFGLITEDPFLNFSTE 202
            DY L L   +I  V  +K  HG     L++QL  +PR++ R A      T    L    +
Sbjct: 192  DYKLELLVRDIQTVRQYKTLHGF---VLILQLASSPRVWYRTADDDIYDTVPGDL---LD 251

Query: 203  IDTQWFRATDFTPSCSIGQ--SAALCLEIPYGRQLPNFHDKFAYFKEIKGKFTLVSGSTY 262
             D  W R TDFT   +IG+  S  + +   Y  +L    D   YF+              
Sbjct: 252  DDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALD---YFR-------------- 311

Query: 263  SSNVNLVPVVTPPRTINLP--------------------YTILFKINLLVQQGCLPGPAL 322
               V    V  PPR  N P                    + I+F +N ++ +G      L
Sbjct: 312  MRRVQEERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQL 371

Query: 323  DISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTL 382
               F+ ++ +Q  +  +   +LK L   K   ++  K L  +  + +  KNP        
Sbjct: 372  TERFFDLLRNQPKDVNIA--SLKHLCTYKRPVFDAYKRL--KLVQEWIQKNPKLLGSHEQ 431

Query: 383  NEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELS 442
            +E +  + R+ +TP + Y   PEV +SNRVLRRY    + FLRV+F+DE +  + S  LS
Sbjct: 432  SEDISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLS 491

Query: 443  PRASSSLED-------GKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAP 502
               +  ++D        KT +FKR+ S+L DG  +  +K+ FLA+S++QLR+ +AW FA 
Sbjct: 492  YFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAE 551

Query: 503  KNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKV-IPDIEVESGS 562
              +   + I+ WMG F + +NVAK AAR+G  F S+  T+ V   EV   +PDIE     
Sbjct: 552  DGKTRVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG-- 611

Query: 563  GVNYVFSDGIGKIAASFARKVAKKC--GIRHTPSAFQIRYAGFKGVISVDPTSS--VKLS 622
               YVFSDGIG I    A +V +K    + ++P A+QIRYAGFKGV++  P+ S  ++L+
Sbjct: 612  ---YVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLA 671

Query: 623  LRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTI 682
            LR+SM K+ S  T L++ SW+++ P FLNRQ+ITLLS LGV D +F   Q+ ++ +L+ I
Sbjct: 672  LRDSMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRI 731

Query: 683  FSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRI 742
              D   A + L   S  E       M+  G+KP +EP LR ML + R ++L  LR KSRI
Sbjct: 732  LDDTDVAFEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRI 791

Query: 743  FIPNGRAMMGCLDETRNLEYGEVFVQCSAHQ-----QLHDDRVIFKRIKSNRHFIVTGTV 802
            F+ +GR +MGCLDE   LE+G+ F+Q S          H  R  FK  K++   +V G V
Sbjct: 792  FVTSGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSR--FKETKTDLE-VVKGYV 851

Query: 803  VVAKNPCLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD 862
             +AKNPCLHPGDVR+L AVDVP LHHM DC++FPQKG RPH NE SGSDLDGD+YFV WD
Sbjct: 852  AIAKNPCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWD 911

Query: 863  PDLIPP--QQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKE 922
              LIPP  +    M Y     + L   V  +++ ++FA  + N+ LG I NAH   AD+ 
Sbjct: 912  QKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRS 971

Query: 923  PKKAMSNPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGK 982
               AM   C+ LA+L + AVDFPKTG    +P +L+ K YPDFM K D  TY+S  +LG+
Sbjct: 972  EYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGR 1031

Query: 983  LFRMLDSIGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLM 1042
            L+R +  +        S   T   A   YD  +E+ GFE+ + +A  HK  YD +L  L+
Sbjct: 1032 LYRRVKEVYDEDAEASSEESTDPSA-IPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLL 1091

Query: 1043 HYHKIKTEAELISGGSLTSSLSFTMKNEA---ESIILAVKSLRKEARGWFNEKADLHYG- 1102
              +K++ E E+++ G + S   +T K +    E +  +  SL+KE R  F E    H   
Sbjct: 1092 GQYKVQKEEEIVT-GHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENL 1151

Query: 1103 --HHTNVY--ARASAWYFVTYHHTYWGWS-----DGRKNHGHFLSFPWCVYDKLIRIKHR 1108
                 N+    +ASAWY VTYH  +   S         +H   LSF W   D L RIK R
Sbjct: 1152 SEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIR 1172

[Close]
BLAST of Cucsa.143700 vs. TAIR10
Match: AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 113.6 bits (283), Expect = 7.8e-25
Identity = 117/420 (27.86%), Postives = 191/420 (45.48%), Query Frame = 1 

Query: 565 FQIRYAGF--KGVISVDPTSSVK-LSLRNSMLK-YE-------STDTKLDVLSWSKY-HP 624
           F+I Y G+  KG    +     + + +R SM+K YE       ST   L+V++ S     
Sbjct: 455 FRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRK 514

Query: 625 CFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALELMSPGENTKILKE 684
             L+R L+ LLS  GV +  F +  +  ++E  TIF     A +A       + T    +
Sbjct: 515 ARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTA---D 574

Query: 685 MMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFV 744
           M+L G  P  EP+L+  L    +++   L+   R  I     +MG +D T  L+  E+ V
Sbjct: 575 MILVGI-PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEICV 634

Query: 745 QCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMID- 804
              + Q                   ++G V+V +NP LH GD+ VL A  V +L   +  
Sbjct: 635 ILHSGQ-------------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGN 694

Query: 805 ---CVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPP-QQVEPMDYTPVPSQV---- 864
               V FPQKG R   +E +G D DGD+YF+  +P L+   +  EP   +  PS++    
Sbjct: 695 AKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGR 754

Query: 865 ----LDHDVTMEEVQEYF--ANYMVNDSLGIIANAHTAFAD----------KEPKKAMSN 924
               L  +   EE+ + F  A +   D +G+ A+      D          KE  +   N
Sbjct: 755 KPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKN 814

Query: 925 PCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDS 948
             ++L  ++  A+D PK G    +P +L +K +P +M++  K  + S ++LG +F  +DS
Sbjct: 815 -ILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDS 849

[Close]
BLAST of Cucsa.143700 vs. TAIR10
Match: AT2G19930.1 (AT2G19930.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-23
Identity = 174/764 (22.77%), Postives = 302/764 (39.53%), Query Frame = 1 

Query: 398  DNFLRVSFVDEELGKMYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAY 457
            DN L V F D +           ++SS+        +K    + ++GI IG ++++F  +
Sbjct: 242  DNVLTVKFADVQ-----------KSSSTYSIDHYFTYK---GIAKNGIMIGLRRYQFFVF 301

Query: 458  SSSQLRENAAWMFAPKNE-------------------LTAAKIRQWMGDF---HNIRNVA 517
                  E    +   K +                   LT   I +    F   H    +A
Sbjct: 302  KDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLA 361

Query: 518  KYAARLGQSFGSSTETLSVSRREVKV--IPDIEVESGSGVNY--------VFSDGIGKIA 577
             Y AR      S T+TL V    +    I DI      G +         + SDG G I+
Sbjct: 362  NYMARFSLIL-SKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYIS 421

Query: 578  ASFAR---------KVAKKCGIRHTPSA-------FQIRYAGF--KGVISVDPTSSVK-L 637
               AR         K  +   I+            F++ Y G+  KG   ++     + +
Sbjct: 422  EDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTV 481

Query: 638  SLRNSMLKYE--------STDTKLDVLSWSKYHP-CFLNRQLITLLSTLGVQDHVFESKQ 697
             +R SM+K          ST   L+V++ S       L++ L+ LLS  G+ +  F    
Sbjct: 482  QVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDIL 541

Query: 698  QELIDELDTIFSDPLKAQQALELMSPGE-NTKILKEMMLCGYKPDSEPFLRMMLHTFRES 757
               ++E  +IF +   A  A   ++ GE + +   +M+L G  P  EP L+  L    ++
Sbjct: 542  LNTLEESKSIFYNKRAALNAA--LNYGEMDDQNAAQMILVGI-PLDEPHLKNYLSILLKT 601

Query: 758  KLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHF 817
            +  +L+   ++ +     +MG +D T  L+  EV V   + Q                  
Sbjct: 602  EKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILESGQ------------------ 661

Query: 818  IVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMID----CVVFPQKGSRPHPNECSGSDL 877
             ++G V+V +NP LH GD+ +L A  V +L   +      V FPQKG R   +E +G D 
Sbjct: 662  -ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDF 721

Query: 878  DGDIYFVCWDPDLIPP-QQVEP-MDYTP--------VPSQVLDHDVTMEEVQEYF--ANY 937
            DGD+YF+  +P+L+   +  EP +  TP         PSQ+   ++  EE+ E F  A +
Sbjct: 722  DGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELE-EELFEMFLTAGF 781

Query: 938  MVNDSLGIIANAHTAFADK---------EPKKAMSNPCIQLAKLFSIAVDFPKTGVPALI 997
              ++ +GI A++     D+         E K  M    ++L  ++  A+D PK G    +
Sbjct: 782  HASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYL 841

Query: 998  PANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNYTPEMARQDYDP 1057
            P  L+   +P +M++  K  ++S ++LG +                F++      ++  P
Sbjct: 842  PNKLKPDIFPHYMERDKK--FQSTSILGLI----------------FDFVKSQTTEEPSP 901

Query: 1058 DMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSSLSFTMKNEAES 1076
              E+     + D+ +   +    RL     Y   +TE        +T ++       A  
Sbjct: 902  SSEISKLPCFEDEPVSEFHMQKCRL----WYDNYRTE--------MTQAMKTDKDESANE 931

[Close]
BLAST of Cucsa.143700 vs. NCBI nr
Match: gi|525507284|ref|NP_001267682.1| (RNA-dependent RNA polymerase 1-like [Cucumis sativus])

HSP 1 Score: 2276.9 bits (5899), Expect = 0.0e+00
Identity = 1115/1115 (100.00%), Postives = 1115/1115 (100.00%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
            SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240
            ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360
            ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480
            RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540
            IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600
            IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720
            MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900
            SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960
            DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020
            TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080
            LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1116
            SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]
BLAST of Cucsa.143700 vs. NCBI nr
Match: gi|377347180|dbj|BAL63010.1| (RNA-dependent RNA polymerase 1 [Cucumis sativus])

HSP 1 Score: 2263.8 bits (5865), Expect = 0.0e+00
Identity = 1109/1115 (99.46%), Postives = 1111/1115 (99.64%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
            SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            NVSVDFGF++RKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240
            ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEI YGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360
            ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480
            RASSSLEDGKTKI KRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK
Sbjct: 421  RASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540
            IRQWMGDFHNIRNVAKYAARLGQ FGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600
            IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720
            MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETRNLEYGEVF QCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900
            SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960
            DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020
            TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080
            LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1116
            SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]
BLAST of Cucsa.143700 vs. NCBI nr
Match: gi|948561977|gb|ALM88234.1| (RNA-dependent RNA polymerase 1b [Cucumis sativus])

HSP 1 Score: 2263.4 bits (5864), Expect = 0.0e+00
Identity = 1111/1115 (99.64%), Postives = 1111/1115 (99.64%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
            SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240
            ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360
            ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPS WLDEEYRKYFKLKNPPQPPILTLN
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSIWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRR PDYIDNFLRVSFVDEELGKMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRCPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480
            RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540
            IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600
            IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLIT LSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITFLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720
            MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900
            SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960
            DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020
            TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080
            LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1116
            SDGRKNHGHFLSFP CVYDKLIRIKHRKINCRARY
Sbjct: 1081 SDGRKNHGHFLSFPRCVYDKLIRIKHRKINCRARY 1115

[Close]
BLAST of Cucsa.143700 vs. NCBI nr
Match: gi|1009154798|ref|XP_015895367.1| (PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba])

HSP 1 Score: 1493.8 bits (3866), Expect = 0.0e+00
Identity = 739/1116 (66.22%), Postives = 889/1116 (79.66%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            MG+TIQ+ GFPS V  E VK F+E +TG GT+ AI  ++ K GGR  YAI+QFT    A+
Sbjct: 1    MGRTIQVSGFPSSVSAELVKKFLENLTGEGTVYAIKLRKFKNGGR-YYAIVQFTSTRDAE 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
             IIS A  RL YGTSYL AR M  DI+  P  + ++ + + LH GCQISKE FSVLW   
Sbjct: 61   FIISLAGARLWYGTSYLTARSMDTDIVAKPRTYLHSLENITLHFGCQISKEKFSVLWKRE 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            NVSVDFG  LR+L+F   Y  V+Y L L YENIWQ+ELH+P GQ+V YLLIQL+GAPRIY
Sbjct: 121  NVSVDFGIGLRRLHFHFMYQYVEYKLQLSYENIWQIELHRPLGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDARSFGLITEDPFLNFSTEI-DTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHD 240
            E+D  S G + EDP  NF  +  D QW RATDFTPSC IGQS+ALCLE+P G +LPNF +
Sbjct: 181  EKDVPSSGDVYEDPIFNFFKDTPDDQWVRATDFTPSCRIGQSSALCLELPSGPRLPNFKE 240

Query: 241  KFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPAL 300
             FAY+KE +G+F+L +G  +S N+ LVP+V PP  ++LPY I+FKIN L+QQGCL GP+L
Sbjct: 241  NFAYYKESEGRFSLETGFPFSCNLYLVPIVGPPLDVHLPYDIIFKINALLQQGCLTGPSL 300

Query: 301  DISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTL 360
            D +FY++VD +  N A I+HAL KL +LKECCY PS WL+E+YRKYFK K PP+ P+++L
Sbjct: 301  DAAFYRLVDPRRINVACIEHALDKLYNLKECCYEPSTWLNEQYRKYFKSKRPPKSPMISL 360

Query: 361  NEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELS 420
            + GLVYV RVQ+TPCKVYF GPE+N+SNRVLR YP++IDNFLRVSFVDEEL KMYST+LS
Sbjct: 361  DAGLVYVRRVQITPCKVYFFGPEINVSNRVLRHYPNHIDNFLRVSFVDEELDKMYSTDLS 420

Query: 421  PRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAA 480
            PR S++    KT ++KR+LSVLRDGI IG+KKFEFLA+SSSQLR+N+ WMFAP + +TAA
Sbjct: 421  PRNSAT----KTGLYKRVLSVLRDGIIIGNKKFEFLAFSSSQLRDNSTWMFAPSDGITAA 480

Query: 481  KIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSD 540
             IR+WMGDF  IRNVAKYAARLGQSFGSSTETLSVSR EV+ IPDIEV  G GV Y FSD
Sbjct: 481  DIREWMGDFRQIRNVAKYAARLGQSFGSSTETLSVSRHEVEKIPDIEVVYG-GVKYAFSD 540

Query: 541  GIGKIAASFARKVAKKCGIRH-TPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
            GIGKI++ FARKVA KCG    TPSAFQIRY G+KGV++VDPTSS KLSLR SM KYES 
Sbjct: 541  GIGKISSEFARKVASKCGCNGVTPSAFQIRYGGYKGVVAVDPTSSFKLSLRKSMCKYESD 600

Query: 601  DTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQAL 660
            + KLDVL++SK+ PCFLNRQLI+LLSTLGV+D VF  KQ + + +LD I +DPL+AQ+AL
Sbjct: 601  NIKLDVLAYSKFQPCFLNRQLISLLSTLGVEDQVFLKKQSKAVQQLDAILTDPLRAQEAL 660

Query: 661  ELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGC 720
            +LMSPGENT +LKE+++CGYKPD+EP+L MML TFR SKL+ELR KSRIFIP+GRAMMGC
Sbjct: 661  DLMSPGENTNVLKELLMCGYKPDTEPYLSMMLQTFRASKLLELRTKSRIFIPDGRAMMGC 720

Query: 721  LDETRNLEYGEVFVQCSA--HQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVR 780
            LDETR LEYG+VFVQ S   ++Q  D  ++       R FIVTG+VVVAKNPCLHPGDVR
Sbjct: 721  LDETRTLEYGQVFVQFSGSRYRQFGDSPMLGGNGTKQR-FIVTGSVVVAKNPCLHPGDVR 780

Query: 781  VLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 840
            VL AV+V  LHHM+DCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDP+LIP  Q+EPMDY
Sbjct: 781  VLRAVNVSELHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPCHQIEPMDY 840

Query: 841  TPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLF 900
            TP PS + D DVT+EEVQEYFANY+VNDSLGIIANAHT FADKE  KAMS+PC++LA+LF
Sbjct: 841  TPAPSMLKDDDVTIEEVQEYFANYIVNDSLGIIANAHTVFADKEYGKAMSSPCVELARLF 900

Query: 901  SIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIR 960
            SIAVDFPKTG+PA+IP +L VKEYPDFM+K DK TYES+NV+GKLFR +  I PN  +IR
Sbjct: 901  SIAVDFPKTGIPAVIPPHLHVKEYPDFMEKPDKQTYESQNVIGKLFREVKDIAPNTSSIR 960

Query: 961  SFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGS 1020
            SF  T E+AR+ YDPDMEV+GFE+YLDDA Y+KN+YD +LGNL+ Y+ IKTEAE++SG  
Sbjct: 961  SF--TSEVARKSYDPDMEVDGFEDYLDDAYYYKNSYDYKLGNLLDYYGIKTEAEILSGSI 1020

Query: 1021 LTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHT 1080
            L  S SFT + +AESI +AV++LRKEAR WFNEK         ++YA+ASAWY VTYH +
Sbjct: 1021 LRMSKSFTKRRDAESINMAVRALRKEARNWFNEKRSGGDFESDDLYAKASAWYHVTYHPS 1080

Query: 1081 YWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCR 1113
            YWG  +   N  H+LSF WCVYD+L+ IK  K + R
Sbjct: 1081 YWGSYNEGMNRDHYLSFAWCVYDRLVEIKEDKASRR 1107

[Close]
BLAST of Cucsa.143700 vs. NCBI nr
Match: gi|743785128|ref|XP_011024314.1| (PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus euphratica])

HSP 1 Score: 1468.0 bits (3799), Expect = 0.0e+00
Identity = 722/1116 (64.70%), Postives = 873/1116 (78.23%), Query Frame = 1 

Query: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
            M KT+Q+ GFPS     +V+ F+E  TG GT++A+  + ++  G R YAI+QFT     +
Sbjct: 1    MSKTVQVSGFPSSATAGAVQVFLESYTGGGTVEALKIRETRTRGARKYAIVQFTTTRATE 60

Query: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
             IIS A +RL YG SYL AR M  DI+P P    +  +++ LH G Q SKE FS +W+ +
Sbjct: 61   QIISLANQRLWYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180
            NVSV+FG  +RKL+FF+S+   +Y L L +ENIWQ+ELH+P GQ+V YLLIQL+GAPRIY
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDARSFGLITEDPFLNFSTEI-DTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHD 240
            ER+  S   + EDP LN+  +I D QW R TDFTPSCSIG S++LCLE+P   QLPNF++
Sbjct: 181  EREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPNFNE 240

Query: 241  KFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPAL 300
             F Y+KE +G F L SGST+S N +LVP+V P   +NLPY ILF++NLLVQ GCL G  L
Sbjct: 241  NFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSML 300

Query: 301  DISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTL 360
            D  FY++VD        I+HAL+KL HLKECCY PSKW +E+YRKY    NPP+ P+L+L
Sbjct: 301  DDIFYRLVDPNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPVLSL 360

Query: 361  NEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELS 420
            + GLVYV++VQ+TPCKV+FCGPEVNISNRVLR+Y + IDNFLRVSFVDEEL K++ST++S
Sbjct: 361  DAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHSTDVS 420

Query: 421  PRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAA 480
            PR SS  E  +T I+ RILS LR+GI IGDKKFEFLA+SSSQLREN+ WMFA +  LTAA
Sbjct: 421  PRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAA 480

Query: 481  KIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSD 540
             IR+WMG FH IRNVA+YAARLGQSF SSTETLSVSR E+++I DIEV  G G  Y+FSD
Sbjct: 481  DIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSRG-GTRYLFSD 540

Query: 541  GIGKIAASFARKVAKKCGIR-HTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
            GIGKI+A FARKVA KCG +  TPSAFQIRYAG+KGV++VDPTS+ KLSLR SM KYES 
Sbjct: 541  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYESE 600

Query: 601  DTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQAL 660
            +TKLDVL+ SKY PCFLNRQLITLLSTLGV DH FE KQ+E +D+LD I +DPL+AQ+AL
Sbjct: 601  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQEAL 660

Query: 661  ELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGC 720
             LMSPGENT ILKEM+LCGY+PD+EPFL MML TFR SKL+ELR K+RIFIPNGR MMGC
Sbjct: 661  VLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMMGC 720

Query: 721  LDETRNLEYGEVFVQCSA--HQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVR 780
            LDETR LE+G+VFVQ S    + L+D   +F      + +++ G+VVVAKNPCLHPGDVR
Sbjct: 721  LDETRTLEHGQVFVQFSGSRFRNLYDSSDVFSERGRGQCYLIEGSVVVAKNPCLHPGDVR 780

Query: 781  VLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 840
            +L AVDVP+LHHM+DCVVFPQKG RPHPN+CSGSDLDGDIYFVCWDP+LIP QQ+ PMDY
Sbjct: 781  ILKAVDVPALHHMVDCVVFPQKGPRPHPNQCSGSDLDGDIYFVCWDPELIPSQQISPMDY 840

Query: 841  TPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLF 900
            TP P+  LDHDVT+EEV+EYF NY+VNDSLGIIANAHTAFADKE  KAMS PC++LA+ F
Sbjct: 841  TPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELARKF 900

Query: 901  SIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIR 960
            SIAVDFPKTGVPA IP+NLRV+EYPDFM+K DK +YES NV+GKLFR +  I P   +IR
Sbjct: 901  SIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 960

Query: 961  SFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGS 1020
            SF  T ++ARQ YDPDMEV+GFE+Y+DDA Y+K+NYD +LGNLM Y+ IKTEAEL+SG  
Sbjct: 961  SF--TSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1020

Query: 1021 LTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHT 1080
            +  S SFT K +AE+I +AV+SLRKEAR WFNEK         +V A+ASAWY VTYHH 
Sbjct: 1021 MKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1080

Query: 1081 YWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCR 1113
            YWG  +   N  HFLSFPWC+YDKLI+IK      R
Sbjct: 1081 YWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIR 1113

The following BLAST results are available for this feature:
BLAST of Cucsa.143700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RDR1_ARATH0.0e+0060.73RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1[more]
RDR1_ORYSJ9.8e-26461.36Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 ... [more]
RDR2_ARATH6.9e-20938.07RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1[more]
RDR2_ORYSJ1.1e-19836.79Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 ... [more]
RDR6_ARATH2.3e-15637.25RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1[more]
BLAST of Cucsa.143700 vs. TrEMBL
Match NameE-valueIdentityDescription
E9NWK7_CUCSA0.0e+00100.00RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=Csa_5G239640 PE=2 SV=1[more]
H3K3Y9_CUCSA0.0e+0099.46RNA-dependent RNA polymerase 1 OS=Cucumis sativus GN=RDR1 PE=2 SV=1[more]
A0A0S1YCZ7_CUCSA0.0e+0099.64RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=RDR1b PE=2 SV=1[more]
B9HJH7_POPTR0.0e+0064.45RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s... [more]
A0A061EGF4_THECC0.0e+0064.18RNA-dependent RNA polymerase 1 isoform 1 OS=Theobroma cacao GN=TCM_011292 PE=4 S... [more]
BLAST of Cucsa.143700 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14790.10.0e+0060.73 RNA-dependent RNA polymerase 1[more]
AT4G11130.13.9e-21038.07 RNA-dependent RNA polymerase 2[more]
AT3G49500.11.3e-15737.25 RNA-dependent RNA polymerase 6[more]
AT2G19910.17.8e-2527.86 RNA-dependent RNA polymerase family protein[more]
AT2G19930.11.1e-2322.77 RNA-dependent RNA polymerase family protein[more]
BLAST of Cucsa.143700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|525507284|ref|NP_001267682.1|0.0e+00100.00RNA-dependent RNA polymerase 1-like [Cucumis sativus][more]
gi|377347180|dbj|BAL63010.1|0.0e+0099.46RNA-dependent RNA polymerase 1 [Cucumis sativus][more]
gi|948561977|gb|ALM88234.1|0.0e+0099.64RNA-dependent RNA polymerase 1b [Cucumis sativus][more]
gi|1009154798|ref|XP_015895367.1|0.0e+0066.22PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba][more]
gi|743785128|ref|XP_011024314.1|0.0e+0064.70PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007855RNA-dep_RNA_pol_euk-typ
IPR007855RNA-dep_RNA_pol_euk-typ
IPR007855RNA-dep_RNA_pol_euk-typ
Vocabulary: Molecular Function
TermDefinition
GO:0003968RNA-directed RNA polymerase activity
GO:0003968RNA-directed RNA polymerase activity
GO:0003968RNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006464 cellular protein modification process
biological_process GO:0010468 regulation of gene expression
biological_process GO:0010025 wax biosynthetic process
biological_process GO:0001172 transcription, RNA-templated
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0007165 signal transduction
biological_process GO:0009615 response to virus
biological_process GO:0051707 response to other organism
biological_process GO:0009617 response to bacterium
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0071229 cellular response to acid chemical
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0031347 regulation of defense response
biological_process GO:0000165 MAPK cascade
biological_process GO:0071310 cellular response to organic substance
biological_process GO:1901701 cellular response to oxygen-containing compound
biological_process GO:0045087 innate immune response
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0048519 negative regulation of biological process
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0060148 positive regulation of posttranscriptional gene silencing
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0006144 purine nucleobase metabolic process
cellular_component GO:0031379 RNA-directed RNA polymerase complex
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0003968 RNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.143700.1Cucsa.143700.1mRNA
Cucsa.143700.2Cucsa.143700.2mRNA
Cucsa.143700.3Cucsa.143700.3mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePANTHERPTHR23079RNA-DEPENDENT RNA POLYMERASEcoord: 1..809
score:
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePFAMPF05183RdRPcoord: 66..639
score: 1.7E
NoneNo IPR availablePANTHERPTHR23079:SF9RNA-DEPENDENT RNA POLYMERASE 1coord: 1..809
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.143700Cla002214Watermelon (97103) v1cgywmB253
Cucsa.143700Csa5G239140Cucumber (Chinese Long) v2cgycuB209
Cucsa.143700CSPI05G11790Wild cucumber (PI 183967)cgycpiB212
Cucsa.143700CmaCh04G000900Cucurbita maxima (Rimu)cgycmaB0401
Cucsa.143700CmoCh04G000870Cucurbita moschata (Rifu)cgycmoB0401
Cucsa.143700Lsi04G009990Bottle gourd (USVL1VR-Ls)cgylsiB232
Cucsa.143700Cp4.1LG01g05940Cucurbita pepo (Zucchini)cgycpeB0388
Cucsa.143700MELO3C026815.2Melon (DHL92) v3.6.1cgymedB238
Cucsa.143700CsaV3_5G011200Cucumber (Chinese Long) v3cgycucB217
Cucsa.143700Bhi07G000388Wax gourdcgywgoB283
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None