Cp4.1LG01g05940 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g05940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-dependent RNA polymerase
Location	Cp4.1LG01 : 443271 .. 448511 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAAGGTAAGGGCCCGCCAATTGTGGAATCATTTGCCTTCGTTCCTGCATTTTCTTTTTCTATGTTCATCCACTGCGTTGCTTTGCAGTATAGTACTACATTTTCTGAACTGGGTGTTGCTCTTTCTATCAAAATTCTGCTTTCTTTTTACCTAATCGTTCTTCCCATTGTTCACATGGGTTATTGATCTGTTCTTGCTTTGGTAAGCTAATCCTCTTTCTTTTTGTTTTTCTTCATCTGGGTTCTTTCTGATCCTTGTTTTCTTCTATTTTTTTTCCCTCTCCGTACTGTATCTGTGATTGTACTATGTAGCTCCATCTTGTCCCTTCGCTGATTCTTACTGTTTCTGGGTTGCTTATGATCTATGGCTGTTCCTTGTCTTCCATGTTTAGCTATCATTTTGTGTTTGATTTATGAAGAAACAGAGTTTTGATTTAATTCCTTCAAGCAGAACATGTGAGGAAAATGGAAATGATAAGACCCATTTCTTTTCAAAGCTTTGTGGGAGGCAATATCTTTGAGAAACTCTCCTTAGTTTCATGAATTAAAGCTTTCTTTTCATAGAATCCTGATACTTTTTTACACTTATTCTCAGTTTTTCTTCATATCATACAACTTTTGAGGACTAGATTGAGCTTAAAATCTCACATGAGCATGAATTGGTGCTTGGCCCTGCATAAACTACCATTATTATGCATTCATGCTCCTCCCCAAATGAGTATGCATTACAATCAATTTGTTTGGGATTACAGGAAAAAGTTTGCTGTTGATCTCATTGGATTGAATGGGTAAAACAATTCAGCTTTATGGATTCCCTTCTGGTGTATTACAAGAATCGGTTAAGGCGTTTGTAGAGAGATTTACAGGCGAAGGAAGTATAGATGCCATAAATGTAAAACGTTCAAGGGGAAGAGGAAAGCGATTGTATGCAATCATCCAGTTTATTGACGATGTAGGTGCTAAGTTAATTATATCTTTGGCTAATGCAAGCCTCCGCTATGGAACTTCTTATCTGAAGGCAAGGGAGTGGAAGCAGGATATTCTACAAGATCCACTAGTCTTTGAATACAATTTCAAAGGCTTAGAACTCCATCTTGGTTGTCAGATATCAAGGGAGGAATTTTTTGTGTTATGGAGAGAGTCAAATGTGTCTGTGAATTTCGAGTTTGAGCGGCGTGATCTTAAGTTTTTCATATCTCATTCTCATGCTGACTACATGCTGGTATTGCGCTATGAGAACATTTGGCAAGTTGAGCTACACAAGCCACCAGGCCAATCTATAGATTATCTTCTGATTCAGGTTCATCCATAAACTTTGAACAATGTTTTCTTTTCTCTTCACTATTGGTAAATATCATGCATTCATACAAGGACATTTGACCGAAAATTTTCACTCAAATGATGCATGTACTATTCTTGATTAGAGGTGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCATAGGCGTTTTAAAACCGTGAGGCTGACGATGATGAGTAACTGCTAGTAGTGGATTTGGGTTGTTACAAATGGTATCAGAATCAGAGACCGGGCGGTGTGCCAACGAGGATGCTGGCCTCCCAAGGGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGAAATGAATCATTACTTATAAGGGTGTGGAAACATCTCCCTAGTAGACGCGTTTTAAAACCATGTGACTAACGGCAATACGTAATAAGCTAAAGTGGACAATATCTGCTAGCGGTGGACTTGGTACCATAAGATGGAAAGAGCAATAATTGAACTTAGCTGTAGATAGAGTAATGCTTAGCTTCATTAAGTTTTTGGGACCTTTGGTCCTCGCCTGCATTCACGTCATATAGGTGCTGTCAGGACATGCTTTCTTTACCCATTTTCATTTCATTTTGCATACTATTCTAACTATGACCTCTCTGTATTGGTAGTTAGTTGGTGCTCCGCGGATTTATGAGAGAGATACAAAGCTTTTTGGACATATTTCTGAAGACCCCTTCTTGAGCTTTTCTAAGGAAATGGACACCGAATGGTTTCGAGCAACCGATTTCACTCCATCATGCTGTATTGGACAATCTGGAGCTTTATGCTTGGAGATTCCTTACGGTCGCCTGCTCCCTAATTTTCATGATAAATTTGCTTACTTCAAAGAAATAAAGGGTAAATTTACACTGGCCAGCGGCTCTACTTATTCGTCCAATGTAAACTTGGTACCTGTAGTTAGACCTCCTCTGAGCATCCACTTGCCATATGCCATTTTGTTTAAGATAAACTTGTTGGTACAACAGGGGTGTCTTCCAGGCCCAGCTCTTGATATCAGTTTCTATGAGATGGTTGATCCTCAGATACACAATATTGCCTTCATAGATCGTGCTTTAAGGAAACTCTATGACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGGTGAGGAGTACAGGAAGTACTCCAAGTTAACGAATCCGCCCCAGCCACCTAACTTGTCCTTAGATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTGACACCTTGTAGAGTGTACTTTTGTGGTCCAGAGGTTAATGTTTCGAATCGTGTATTGCGTCGTTATCCCGAATATCTTGACAACTTTTTGCGTGTTTCGTTTGTCGACGAGGAATTGGATAAACTGTATTCAACTGAATTGTCTCCACGAGAATCTTCTTCCTTGGAGGATGGAAAGACGAAAATATTTAAAAGAATCCTTTCAGTTCTGAAAGATGGCATTACCATTGGTGATAAGAAGTTCGAGTTTCTTGCGTATTCTTCGAGTCAATTACGGGAAAATGCCGTGTGGATGTTTGCTCCAAGAGATGGGATTACTGCAGCTAAAATAAGGAAATGGATGGGAGATTTTCATAGTATAAGAAATGTAGCCAAGTATGCTGCTAGACTAGGCCAATCCTTTGGTTCATCCACAGAAACTGCAAGTGTCAGTCGACGCGAAGTCGAGGTTATTCCTGATATCGAGGTTAAATCAGATGCTGGTATCAATTATGTCTTCTCTGATGGGATTGGGAAAATATCAGCTAGTTTTGCTAGAGAAGTGGCTAGAAAATGCCGCATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCGGTCGATCCAACCTCATTCGTAAAATTATCGCTCAGGAACAGCATGCTAAAGTATGAGTCGACCGACACGAAGCTCGATGTCTTATCTTGGAGTAGATATCATCCTTGTTATCTTAATCGTCAGTTGATTACTCTTCTGTCTACACTTGGAGTTCAGGATGATATCTTTGAGAGTAAACAAAAGGAATTGATAGATCAATTGGACACCATTTTTATGGATCCATTGAAGGCTCAGCAGGCCCTTGAGCTAATGTCTCCGGGAGAGAATACCAACATTCTGAAGGAAATAATCTCGTGCGGTTACCGACCTGATTCCGAACCTTTCTTATCTATGATGTTGCATACATTCCGAGAATCGAAGTTGTTAGAATTGCGGAGAAAATCTAGAATCTTTATCCCAAATGGAAGAGCAATGATGGGATGTCTTGATGAAACTGGAAACTTAGAATATGGAGAGGTATTTGTGCAGTGTTCTGCTCACCAGCAGCTGCATAATGATCATATTATCTTTAAAAGAAGCAAATCAAATCAACATTTCATCGTAACAGGAACGGTAGTCGTGGCGAAGAACCCGTGCTTGCACCCAGGTGACGTGCGTGTCTTAACCGCTGTGGATGTACCATCTCTACATCACATGGTGGATTGTCTGGTTTTTCCACAGAAGGGACCAAGGTAAATGATCTAATCTTGTTTATGCTTAAACTCATGTCTGCTAGTAATTCTGCTGATATTGGAAACTTTCTTTTCTGTACAAGACCTCATCCGAATGAATGCTCGGGAAGCGATCTCGATGGCGATATATACTTCGTGTGCTGGGATCCTGATTTGATTCCACCTCAACAAGTCGAACCAATGGATTATACCCCCGTGCTTAGCAGATTACTAGATCATGACGTCACAATGGAGGAAGTTCAAGAGTATTTTGCAAATTATATGGTCAATGACAGTCTAGGAATCATTGCCAATGCTCATACAGCATTTGCAGATAGTAGGCCAGAGAAAGCAATGAGCGAGCCTTGTATAAAGCTTGCAAAACTGTTCTCAATTGCAGTGGACTTCCCCAAAACTGGCGTTCCTGCTTTGATATCTGCTGATCTAAGAGTACAAGTATATCCTGATTTCATGGACAAACCCGACAAACAGAGCTACAAGTCACATAATGTACTGGGGAAGCTGTTCAGAATGTTGGATGACATTGAACCAAGGATTAGCATCAAGTCCGTGAAGTTTACTCGGGAGATAGCTCGGCAAGCTTATGACCCCGACATGGAAGTCGACGGCTTCGAGGAGTACCTCGACGATGCGCTTTATCACAAGAACAATTACGACATGAGGTTGGGGAATTTGATGAAATATTATAAGATCAAAACTGAGGCAGAGCTAATCAGTGGGGTTAGTTTGACAAAATCATCTTCTTTTACTAAGAAAAATGAAGCGGAATCTATCATCATGGCTGTTAAGTCCCTGCGAAAGGAGGCGAGGGGATGGTTCAATGAGAATGCTGGCTTGCATTTTGGACATGACAACAATGCGTATGCAAGAGCTTCAGCATGGTATTTTGTTACATATCATTACAGCTACTGGGGCTGGTATGGGGAGAAGAATGAAAGCCATTTTCTCAGCTTTCCATGGTGTGTTTACGACAAGCTCATCCGTATCAAGAAGCGCAAGATTGGTGCTCGAGCTCGCCATCGGTAAGTTTCTCGCACCGTGAATCTTCATGAAGTTTTAGTATATTTCACTTGAGTTAAGAACAACAATCAACTTGGCATAGTTGTGGCAGACACCTTATTTTTTACTAATCACTTTTAGCCTTCTTGCAACTCTTCCATCCAATGTTTTACTTCAATAACTTTATGAACGCACCGAAGAACACACCGAAGGACAGAATATTGACTCTTTGATTATGTTGAAGTGTGCGCGAAGCTAGCTTGAACACTCACGTACAAGATTTGACATAGTTAGTAATATCAACTCAGATATTATATACACGATCTTCGTTATCAATCATGTTATAATGTTAATACTAAAGCATTGGACTTGATACCTA

mRNA sequence

ATGCTTAAGGTAAGGGCCCGCCAATTGTGGAATCATTTGCCTTCGTTCCTGCATTTTCTTTTTCTATGTTCATCCACTGCGTTGCTTTGCAGTATAGTACTACATTTTCTGAACTGGGTGTTGCTCTTTCTATCAAAATTCTGCTTTCTTTTTACCTAATCGTTCTTCCCATTGTTCACATGGGTTATTGATCTGTTCTTGCTTTGGAAAAAGTTTGCTGTTGATCTCATTGGATTGAATGGGTAAAACAATTCAGCTTTATGGATTCCCTTCTGGTGTATTACAAGAATCGGTTAAGGCGTTTGTAGAGAGATTTACAGGCGAAGGAAGTATAGATGCCATAAATGTAAAACGTTCAAGGGGAAGAGGAAAGCGATTGTATGCAATCATCCAGTTTATTGACGATGTAGGTGCTAAGTTAATTATATCTTTGGCTAATGCAAGCCTCCGCTATGGAACTTCTTATCTGAAGGCAAGGGAGTGGAAGCAGGATATTCTACAAGATCCACTAGTCTTTGAATACAATTTCAAAGGCTTAGAACTCCATCTTGGTTGTCAGATATCAAGGGAGGAATTTTTTGTGTTATGGAGAGAGTCAAATGTGTCTGTGAATTTCGAGTTTGAGCGGCGTGATCTTAAGTTTTTCATATCTCATTCTCATGCTGACTACATGCTGGTATTGCGCTATGAGAACATTTGGCAAGTTGAGCTACACAAGCCACCAGGCCAATCTATAGATTATCTTCTGATTCAGTTAGTTGGTGCTCCGCGGATTTATGAGAGAGATACAAAGCTTTTTGGACATATTTCTGAAGACCCCTTCTTGAGCTTTTCTAAGGAAATGGACACCGAATGGTTTCGAGCAACCGATTTCACTCCATCATGCTGTATTGGACAATCTGGAGCTTTATGCTTGGAGATTCCTTACGGTCGCCTGCTCCCTAATTTTCATGATAAATTTGCTTACTTCAAAGAAATAAAGGGTAAATTTACACTGGCCAGCGGCTCTACTTATTCGTCCAATGTAAACTTGGTACCTGTAGTTAGACCTCCTCTGAGCATCCACTTGCCATATGCCATTTTGTTTAAGATAAACTTGTTGGTACAACAGGGGTGTCTTCCAGGCCCAGCTCTTGATATCAGTTTCTATGAGATGGTTGATCCTCAGATACACAATATTGCCTTCATAGATCGTGCTTTAAGGAAACTCTATGACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGGTGAGGAGTACAGGAAGTACTCCAAGTTAACGAATCCGCCCCAGCCACCTAACTTGTCCTTAGATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTGACACCTTGTAGAGTGTACTTTTGTGGTCCAGAGGTTAATGTTTCGAATCGTGTATTGCGTCGTTATCCCGAATATCTTGACAACTTTTTGCGTGTTTCGTTTGTCGACGAGGAATTGGATAAACTGTATTCAACTGAATTGTCTCCACGAGAATCTTCTTCCTTGGAGGATGGAAAGACGAAAATATTTAAAAGAATCCTTTCAGTTCTGAAAGATGGCATTACCATTGGTGATAAGAAGTTCGAGTTTCTTGCGTATTCTTCGAGTCAATTACGGGAAAATGCCGTGTGGATGTTTGCTCCAAGAGATGGGATTACTGCAGCTAAAATAAGGAAATGGATGGGAGATTTTCATAGTATAAGAAATGTAGCCAAGTATGCTGCTAGACTAGGCCAATCCTTTGGTTCATCCACAGAAACTGCAAGTGTCAGTCGACGCGAAGTCGAGGTTATTCCTGATATCGAGGTTAAATCAGATGCTGGTATCAATTATGTCTTCTCTGATGGGATTGGGAAAATATCAGCTAGTTTTGCTAGAGAAGTGGCTAGAAAATGCCGCATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCGGTCGATCCAACCTCATTCGTAAAATTATCGCTCAGGAACAGCATGCTAAAGTATGAGTCGACCGACACGAAGCTCGATGTCTTATCTTGGAGTAGATATCATCCTTGTTATCTTAATCGTCAGTTGATTACTCTTCTGTCTACACTTGGAGTTCAGGATGATATCTTTGAGAGTAAACAAAAGGAATTGATAGATCAATTGGACACCATTTTTATGGATCCATTGAAGGCTCAGCAGGCCCTTGAGCTAATGTCTCCGGGAGAGAATACCAACATTCTGAAGGAAATAATCTCGTGCGGTTACCGACCTGATTCCGAACCTTTCTTATCTATGATGTTGCATACATTCCGAGAATCGAAGTTGTTAGAATTGCGGAGAAAATCTAGAATCTTTATCCCAAATGGAAGAGCAATGATGGGATGTCTTGATGAAACTGGAAACTTAGAATATGGAGAGGTATTTGTGCAGTGTTCTGCTCACCAGCAGCTGCATAATGATCATATTATCTTTAAAAGAAGCAAATCAAATCAACATTTCATCGTAACAGGAACGGTAGTCGTGGCGAAGAACCCGTGCTTGCACCCAGGTGACGTGCGTGTCTTAACCGCTGTGGATGTACCATCTCTACATCACATGGTGGATTGTCTGGTTTTTCCACAGAAGGGACCAAGACCTCATCCGAATGAATGCTCGGGAAGCGATCTCGATGGCGATATATACTTCGTGTGCTGGGATCCTGATTTGATTCCACCTCAACAAGTCGAACCAATGGATTATACCCCCGTGCTTAGCAGATTACTAGATCATGACGTCACAATGGAGGAAGTTCAAGAGTATTTTGCAAATTATATGGTCAATGACAGTCTAGGAATCATTGCCAATGCTCATACAGCATTTGCAGATAGTAGGCCAGAGAAAGCAATGAGCGAGCCTTGTATAAAGCTTGCAAAACTGTTCTCAATTGCAGTGGACTTCCCCAAAACTGGCGTTCCTGCTTTGATATCTGCTGATCTAAGAGTACAAGTATATCCTGATTTCATGGACAAACCCGACAAACAGAGCTACAAGTCACATAATGTACTGGGGAAGCTGTTCAGAATGTTGGATGACATTGAACCAAGGATTAGCATCAAGTCCGTGAAGTTTACTCGGGAGATAGCTCGGCAAGCTTATGACCCCGACATGGAAGTCGACGGCTTCGAGGAGTACCTCGACGATGCGCTTTATCACAAGAACAATTACGACATGAGGTTGGGGAATTTGATGAAATATTATAAGATCAAAACTGAGGCAGAGCTAATCAGTGGGGTTAGTTTGACAAAATCATCTTCTTTTACTAAGAAAAATGAAGCGGAATCTATCATCATGGCTGTTAAGTCCCTGCGAAAGGAGGCGAGGGGATGGTTCAATGAGAATGCTGGCTTGCATTTTGGACATGACAACAATGCGTATGCAAGAGCTTCAGCATGGTATTTTGTTACATATCATTACAGCTACTGGGGCTGGTATGGGGAGAAGAATGAAAGCCATTTTCTCAGCTTTCCATGGTGTGTTTACGACAAGCTCATCCGTATCAAGAAGCGCAAGATTGGTGCTCGAGCTCGCCATCGGTAAGTTTCTCGCACCGTGAATCTTCATGAAGTTTTAGTATATTTCACTTGAGTTAAGAACAACAATCAACTTGGCATAGTTGTGGCAGACACCTTATTTTTTACTAATCACTTTTAGCCTTCTTGCAACTCTTCCATCCAATGTTTTACTTCAATAACTTTATGAACGCACCGAAGAACACACCGAAGGACAGAATATTGACTCTTTGATTATGTTGAAGTGTGCGCGAAGCTAGCTTGAACACTCACGTACAAGATTTGACATAGTTAGTAATATCAACTCAGATATTATATACACGATCTTCGTTATCAATCATGTTATAATGTTAATACTAAAGCATTGGACTTGATACCTA

Coding sequence (CDS)

ATGGGTAAAACAATTCAGCTTTATGGATTCCCTTCTGGTGTATTACAAGAATCGGTTAAGGCGTTTGTAGAGAGATTTACAGGCGAAGGAAGTATAGATGCCATAAATGTAAAACGTTCAAGGGGAAGAGGAAAGCGATTGTATGCAATCATCCAGTTTATTGACGATGTAGGTGCTAAGTTAATTATATCTTTGGCTAATGCAAGCCTCCGCTATGGAACTTCTTATCTGAAGGCAAGGGAGTGGAAGCAGGATATTCTACAAGATCCACTAGTCTTTGAATACAATTTCAAAGGCTTAGAACTCCATCTTGGTTGTCAGATATCAAGGGAGGAATTTTTTGTGTTATGGAGAGAGTCAAATGTGTCTGTGAATTTCGAGTTTGAGCGGCGTGATCTTAAGTTTTTCATATCTCATTCTCATGCTGACTACATGCTGGTATTGCGCTATGAGAACATTTGGCAAGTTGAGCTACACAAGCCACCAGGCCAATCTATAGATTATCTTCTGATTCAGTTAGTTGGTGCTCCGCGGATTTATGAGAGAGATACAAAGCTTTTTGGACATATTTCTGAAGACCCCTTCTTGAGCTTTTCTAAGGAAATGGACACCGAATGGTTTCGAGCAACCGATTTCACTCCATCATGCTGTATTGGACAATCTGGAGCTTTATGCTTGGAGATTCCTTACGGTCGCCTGCTCCCTAATTTTCATGATAAATTTGCTTACTTCAAAGAAATAAAGGGTAAATTTACACTGGCCAGCGGCTCTACTTATTCGTCCAATGTAAACTTGGTACCTGTAGTTAGACCTCCTCTGAGCATCCACTTGCCATATGCCATTTTGTTTAAGATAAACTTGTTGGTACAACAGGGGTGTCTTCCAGGCCCAGCTCTTGATATCAGTTTCTATGAGATGGTTGATCCTCAGATACACAATATTGCCTTCATAGATCGTGCTTTAAGGAAACTCTATGACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGGTGAGGAGTACAGGAAGTACTCCAAGTTAACGAATCCGCCCCAGCCACCTAACTTGTCCTTAGATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTGACACCTTGTAGAGTGTACTTTTGTGGTCCAGAGGTTAATGTTTCGAATCGTGTATTGCGTCGTTATCCCGAATATCTTGACAACTTTTTGCGTGTTTCGTTTGTCGACGAGGAATTGGATAAACTGTATTCAACTGAATTGTCTCCACGAGAATCTTCTTCCTTGGAGGATGGAAAGACGAAAATATTTAAAAGAATCCTTTCAGTTCTGAAAGATGGCATTACCATTGGTGATAAGAAGTTCGAGTTTCTTGCGTATTCTTCGAGTCAATTACGGGAAAATGCCGTGTGGATGTTTGCTCCAAGAGATGGGATTACTGCAGCTAAAATAAGGAAATGGATGGGAGATTTTCATAGTATAAGAAATGTAGCCAAGTATGCTGCTAGACTAGGCCAATCCTTTGGTTCATCCACAGAAACTGCAAGTGTCAGTCGACGCGAAGTCGAGGTTATTCCTGATATCGAGGTTAAATCAGATGCTGGTATCAATTATGTCTTCTCTGATGGGATTGGGAAAATATCAGCTAGTTTTGCTAGAGAAGTGGCTAGAAAATGCCGCATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCGGTCGATCCAACCTCATTCGTAAAATTATCGCTCAGGAACAGCATGCTAAAGTATGAGTCGACCGACACGAAGCTCGATGTCTTATCTTGGAGTAGATATCATCCTTGTTATCTTAATCGTCAGTTGATTACTCTTCTGTCTACACTTGGAGTTCAGGATGATATCTTTGAGAGTAAACAAAAGGAATTGATAGATCAATTGGACACCATTTTTATGGATCCATTGAAGGCTCAGCAGGCCCTTGAGCTAATGTCTCCGGGAGAGAATACCAACATTCTGAAGGAAATAATCTCGTGCGGTTACCGACCTGATTCCGAACCTTTCTTATCTATGATGTTGCATACATTCCGAGAATCGAAGTTGTTAGAATTGCGGAGAAAATCTAGAATCTTTATCCCAAATGGAAGAGCAATGATGGGATGTCTTGATGAAACTGGAAACTTAGAATATGGAGAGGTATTTGTGCAGTGTTCTGCTCACCAGCAGCTGCATAATGATCATATTATCTTTAAAAGAAGCAAATCAAATCAACATTTCATCGTAACAGGAACGGTAGTCGTGGCGAAGAACCCGTGCTTGCACCCAGGTGACGTGCGTGTCTTAACCGCTGTGGATGTACCATCTCTACATCACATGGTGGATTGTCTGGTTTTTCCACAGAAGGGACCAAGACCTCATCCGAATGAATGCTCGGGAAGCGATCTCGATGGCGATATATACTTCGTGTGCTGGGATCCTGATTTGATTCCACCTCAACAAGTCGAACCAATGGATTATACCCCCGTGCTTAGCAGATTACTAGATCATGACGTCACAATGGAGGAAGTTCAAGAGTATTTTGCAAATTATATGGTCAATGACAGTCTAGGAATCATTGCCAATGCTCATACAGCATTTGCAGATAGTAGGCCAGAGAAAGCAATGAGCGAGCCTTGTATAAAGCTTGCAAAACTGTTCTCAATTGCAGTGGACTTCCCCAAAACTGGCGTTCCTGCTTTGATATCTGCTGATCTAAGAGTACAAGTATATCCTGATTTCATGGACAAACCCGACAAACAGAGCTACAAGTCACATAATGTACTGGGGAAGCTGTTCAGAATGTTGGATGACATTGAACCAAGGATTAGCATCAAGTCCGTGAAGTTTACTCGGGAGATAGCTCGGCAAGCTTATGACCCCGACATGGAAGTCGACGGCTTCGAGGAGTACCTCGACGATGCGCTTTATCACAAGAACAATTACGACATGAGGTTGGGGAATTTGATGAAATATTATAAGATCAAAACTGAGGCAGAGCTAATCAGTGGGGTTAGTTTGACAAAATCATCTTCTTTTACTAAGAAAAATGAAGCGGAATCTATCATCATGGCTGTTAAGTCCCTGCGAAAGGAGGCGAGGGGATGGTTCAATGAGAATGCTGGCTTGCATTTTGGACATGACAACAATGCGTATGCAAGAGCTTCAGCATGGTATTTTGTTACATATCATTACAGCTACTGGGGCTGGTATGGGGAGAAGAATGAAAGCCATTTTCTCAGCTTTCCATGGTGTGTTTACGACAAGCTCATCCGTATCAAGAAGCGCAAGATTGGTGCTCGAGCTCGCCATCGGTAA

Protein sequence

MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAKLIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRESNVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIYERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDKFAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSDGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGWYGEKNESHFLSFPWCVYDKLIRIKKRKIGARARHR

Homology

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BLAST of Cp4.1LG01g05940 vs. Swiss-Prot
Match: RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1327.4 bits (3434), Expect = 0.0e+00
Identity = 674/1121 (60.12%), Postives = 827/1121 (73.77%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQ++GFP+GV  E VK F+ER TG G++ AI V++ +  G R+YAI+QF  +   +
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
            LII+ A   L YG SYLKA E +QDI+  P    +   GL++  GCQ+S ++F  LW   
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            +V V+F    R L F  S    DY L L YENIWQ++LH P G+S  +L+IQ++GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ERDTK----LFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPN 240
            E++ +    LFG +       +S   D +W R TDFT S CIGQS A CLE+P    +P+
Sbjct: 181  EKEDQPINLLFGIMD-----FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 240

Query: 241  FHDKFAYFKEIKGK-FTLASGSTYSSNVN-LVPVVRPPLSIHLPYAILFKINLLVQQGCL 300
            F + FA + E +   F + SGS+YSSN N LVPVV PP    LP+ ILFK+N LVQ  CL
Sbjct: 241  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 300

Query: 301  PGPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQP 360
             GPALD+ FY +++ + ++ A ID  L KL+ L ECCY P+ WL +EY+K+      P  
Sbjct: 301  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 360

Query: 361  PNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLY 420
            P +SLD+GLVY++RVQVTP RVYF GPEVNVSNRVLR Y +Y++NFLRVSFVDE+L+K+ 
Sbjct: 361  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 420

Query: 421  STELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRD 480
            S +LSPR S+     +TK++ RI SVL+DGI IGDKKFEFLA+SSSQLREN+ WMFAP D
Sbjct: 421  SMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 480

Query: 481  GITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGIN 540
             ITAA IR WMGDF  IRNVAKYAARLGQSF SS ET +V   E+EVIPD+E+ S  G  
Sbjct: 481  RITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS-LGTR 540

Query: 541  YVFSDGIGKISASFAREVARKCRI-RHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSML 600
            YVFSDGIGKISA FAR+VARKC +   +PSAFQIRY G+KGV++VDP S  KLSLR SM 
Sbjct: 541  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 600

Query: 601  KYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLK 660
            K+ES +TKLDVL+WS+Y PCY+NRQLITLLSTLGV D +FE KQ+E++D+LD I   PL+
Sbjct: 601  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 660

Query: 661  AQQALELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGR 720
            A +AL LM+PGENTNILK +I CGY+PD+EPFLSMML  FR SKLLELR K+RIFI  GR
Sbjct: 661  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 720

Query: 721  AMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPG 780
            +MMGCLDET  LEYG+V VQ S               +  + FI+TG VVVAKNPCLHPG
Sbjct: 721  SMMGCLDETRTLEYGQVVVQYS------------DPMRPGRRFIITGPVVVAKNPCLHPG 780

Query: 781  DVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEP 840
            DVRVL AV+VP+L+HMVDC+VFPQKG RPHPNECSGSDLDGDIYFVCWD +L+PP+  EP
Sbjct: 781  DVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEP 840

Query: 841  MDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLA 900
            MDYTP  +++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFAD  P KA S+PCI+LA
Sbjct: 841  MDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELA 900

Query: 901  KLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDD-IEPRI 960
            K FS AVDFPKTGV A+I   L V+ YPDFM+KPDK +Y+S NV+GKLFR + +   P I
Sbjct: 901  KKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLI 960

Query: 961  SIKSVKFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELIS 1020
            SIKS  FT ++A ++YD DMEVDGFEEY+D+A Y K NYD +LGNLM YY IKTEAE++S
Sbjct: 961  SIKS--FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILS 1020

Query: 1021 GVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTY 1080
            G  +  S SFTK+ +AESI  AV++LRKE    FN +       + N  A+ASAWY VTY
Sbjct: 1021 GGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASE-----EEENESAKASAWYHVTY 1080

Query: 1081 HYSYWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGARAR 1113
            H SYWG Y E  N  HFLSF WCVYDKL+RIKK  +G R R
Sbjct: 1081 HSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQR 1093

[Close]

BLAST of Cp4.1LG01g05940 vs. Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 900.2 bits (2325), Expect = 2.3e-260
Identity = 451/734 (61.44%), Postives = 567/734 (77.25%), Query Frame = 1


Query: 376  VYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFK 435
            VYF GPE+NVSNRV+R +   ++NFLR+SFVDE+ +KL +T+LSPR +S  +  +T ++K
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 436  RILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAKIRKWMGDFHSIRNVA 495
            R+LSVL DGITIG K FEFLA+SSSQLR+N+ WMFA R G+ A+ IR WMGDF +IRNVA
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 496  KYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSDGIGKISASFAREVARK 555
            KYAARLGQSF SSTET  V + EVE I DI+     G  +VFSDGIGKIS++FA EVA K
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDIK----NGTQHVFSDGIGKISSAFANEVAMK 188

Query: 556  CRI-RHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDTKLDVLSWSRYHPCY 615
            C + R  PSAFQIRY G+KGV++VDPTS  KLSLR SMLK++S +  +DVL++S+Y P +
Sbjct: 189  CNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGF 248

Query: 616  LNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALELMSPGENTNILKEII 675
            LNRQLITLLSTLGV+D +FE KQ+E ++QL+ +  DP  A +A+ELM  GE TN +KE++
Sbjct: 249  LNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELL 308

Query: 676  SCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQC 735
             CGY+PD EP+LSM+L TFR SKLLEL+ KSRI IP GRAMMGCLDET  L+YG+VF++ 
Sbjct: 309  LCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRA 368

Query: 736  SAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCLV 795
            ++     ND         N  F VTG VV+AKNPCLHPGD+R+L AVDVP LHHM +C+V
Sbjct: 369  TSGV---ND---------NDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 428

Query: 796  FPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVLSRLLDHDVTMEEVQ 855
            FPQ+GPRPHPNECSGSDLDGDIYFV WDP LIPP+ V PMDYTP  +  LDHDVT+EEV+
Sbjct: 429  FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 488

Query: 856  EYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISAD 915
            EYF NY+VN+SLG+IANAH  FAD    KA S PCI+LAKLFSIAVDFPKTGVPALI  +
Sbjct: 489  EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 548

Query: 916  LRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEV 975
            L V+ YPDFM+K DK +Y+S  V+GKL+R +    P I      FTRE+AR++YD DM V
Sbjct: 549  LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIK----HFTREVARRSYDTDMIV 608

Query: 976  DGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMA 1035
            DG+E+Y+ +A+  K+ YD +LGNLM +Y IK+EAE+ISG  L  + +FTKK++A++I +A
Sbjct: 609  DGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLA 668

Query: 1036 VKSLRKEARGWFNENAGLHFGHDNNA-YARASAWYFVTYHYSYWGWYGEKNE-SHFLSFP 1095
            V+SLRKEAR  F+E +    GH ++A  A+ASAWY VTYH  +WG Y E  E  HF+SFP
Sbjct: 669  VRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFP 722

Query: 1096 WCVYDKLIRIKKRK 1107
            WC+Y+KL+RIK+R+
Sbjct: 729  WCIYEKLLRIKQRR 722

[Close]

BLAST of Cp4.1LG01g05940 vs. Swiss-Prot
Match: RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)

HSP 1 Score: 743.4 bits (1918), Expect = 3.5e-213
Identity = 423/1125 (37.60%), Postives = 654/1125 (58.13%), Query Frame = 1


Query: 4    TIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGK-RLYAIIQFID-DVGAKL 63
            T+++   P  ++ + +  F+E   GE ++ A+ +  +R   K R +A +QF   +V ++ 
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   IISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREE-FFVLWRES 123
             +  + + L + T  L+  E   DI+  P+        + L +G   S E+ F  L +  
Sbjct: 71   QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 124  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQS--IDYLLIQLVGAPR 183
             V      E+R ++F++  S   Y + +R+E+I +       G +  ID  L++L   P+
Sbjct: 131  GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190

Query: 184  IYERDT-KLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNF 243
            +++R T  +      D +    ++ D  W R TDF+ S  IG S   CLE+  G  + + 
Sbjct: 191  VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250

Query: 244  HDKFAYFKEIKGKFTLASGSTYSSNVNLVPVVRPP-LSIHLPYAILFKINLLVQ-QGCLP 303
                 Y++E     T   G T++S   +VP++    L +  PY ILF++N LV  Q    
Sbjct: 251  FSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISL 310

Query: 304  GPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLT--NPPQ 363
              A D+   +++       A +   L+KL+     CY+P  ++  + +   K    +P  
Sbjct: 311  FAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPAS 370

Query: 364  PPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKL 423
                  ++ ++   R  VTP ++Y  GPE+  +N V++ + E++ +F+RV+FV+E+  KL
Sbjct: 371  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 430

Query: 424  YSTELS--PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFA 483
             +  LS   +E   ++  +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR N+VWMFA
Sbjct: 431  PANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 490

Query: 484  PRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDA 543
              + + A  IR+WMG F  IR+++K AAR+GQ F +S +T  V  ++VE IPDIEV +D 
Sbjct: 491  SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTD- 550

Query: 544  GINYVFSDGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNS 603
            G +Y FSDGIGKIS +FA++VA+KC + H PSAFQIRY G+KGVI+VD +SF KLSLR+S
Sbjct: 551  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 610

Query: 604  MLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDP 663
            MLK++S +  L+V  W+   PC+LNR++I LLSTLG++D +FE+ Q   +  L  +  D 
Sbjct: 611  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 670

Query: 664  LKAQQALELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPN 723
              A   L+ +S   + N+L +++  GY P SEP+LSMML    ES+L EL+ + RI +P 
Sbjct: 671  DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 730

Query: 724  GRAMMGCLDETGNLEYGEVFVQCS-AHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCL 783
            GR ++GC+DE G LEYG+V+V+ +    +L +    + R    +  +V G VVV KNPCL
Sbjct: 731  GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 790

Query: 784  HPGDVRVLTAVDVPSLHH--MVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP 843
            HPGD+RVL A+          +DC++FPQKG RPHPNECSG DLDGD +FV WD  +IP 
Sbjct: 791  HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 850

Query: 844  QQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEP 903
            +   PMDY     RL+DHDVT+EE+ ++F +YM++D+LG+I+ AH   AD  PEKA S+ 
Sbjct: 851  EMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQK 910

Query: 904  CIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDI 963
            C++LA L S AVDF KTG PA +   L+ + +PDF+++ +K +Y S +V GKL+R     
Sbjct: 911  CLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYR----- 970

Query: 964  EPRISIKSVKFTREIARQ-----AYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYK 1023
                ++KS    R+   +     AYD  +E  GFE +++ A  H++ Y  +L +LM YY 
Sbjct: 971  ----AVKSSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYG 1030

Query: 1024 IKTEAELISGVSLTKSSSFTKKNE-----AESIIMAVKSLRKEARGWFNENAGLHFGHDN 1083
               E E+++G+  TK     + N       + I ++VK L KEA GWF ++       + 
Sbjct: 1031 AANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSC----EDEQ 1090

Query: 1084 NAYARASAWYFVTYHYSYWGWYGEKNESHFLSFPWCVYDKLIRIK 1104
                 ASAWY+VTY+ ++        +  FLSFPW V D L+ IK
Sbjct: 1091 QKKKLASAWYYVTYNPNH-----RDEKLTFLSFPWIVGDVLLDIK 1114

[Close]

BLAST of Cp4.1LG01g05940 vs. Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 704.1 bits (1816), Expect = 2.4e-201
Identity = 419/1127 (37.18%), Postives = 628/1127 (55.72%), Query Frame = 1


Query: 11   PSGVLQESVKAFVERFTGEGSIDAINVKRS-RGRGKRLYAIIQFIDDVGAKLIISLANAS 70
            PS V  E +  F       G   A  +  + RG   R +  +QF     A     LA++ 
Sbjct: 19   PSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAGLASSG 78

Query: 71   L--RYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRESNVSVNFE 130
               R+  + L       D+L           G  L +G +++   F        V     
Sbjct: 79   RLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGVRAEVI 138

Query: 131  FERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSID---YLLIQLVGAPRIYERDT 190
              +R +  ++ H    Y L + +E     ++    G ++D    +L+QL  APRI+   +
Sbjct: 139  PGKRRVDLYLEHDSQRYKLEVLFE-----DMKDCLGCTLDGMGAILLQLNYAPRIHTAIS 198

Query: 191  --KLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDKFA 250
               +     +D F +  ++    W RA DFTP+   G+   L L++    L+ +      
Sbjct: 199  GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLP 258

Query: 251  YFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALDIS 310
            +   + G+ T+ S     ++ N+VP+V  P    +PY +LF++N L+  G +    ++  
Sbjct: 259  FSGNL-GELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNAD 318

Query: 311  FYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYS-KLTNPPQPPNLSLDE 370
             ++ +     +++   R   K++ L+  CY P +++ +E   YS K ++     N    E
Sbjct: 319  LFKALQELPVDVS--RRIFEKMHKLESTCYGPLQFIQQE--AYSMKRSHNVLLSNEGEGE 378

Query: 371  G---LVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 430
            G   L+  +RV +TP +++  GPE  V+N V++ +  Y  +F+RV+FVDE+  KL S  +
Sbjct: 379  GERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAI 438

Query: 431  SPRESSSL--EDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGI 490
            S R       +  KT ++ RILS+LK G +IG K FEFLA+S+SQLR N+VWMFA    +
Sbjct: 439  SARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASL 498

Query: 491  TAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYV 550
             A  IR+WMG F +IR+V+K AAR+GQ F SS +T  V R +VEVIPDIE+ +D G  Y+
Sbjct: 499  NAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTD-GSKYI 558

Query: 551  FSDGIGKISASFAREVARKCRIRHT--PSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLK 610
            FSDGIGKIS  FA+ VA    +  T  PSAFQIRY G+KGVI++DP S + LSLR SM K
Sbjct: 559  FSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKK 618

Query: 611  YESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKA 670
            +ES    L++ SWS+  PCY+NR++I+LLSTLG++D+IF + Q++ + + + +  +   A
Sbjct: 619  FESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVA 678

Query: 671  QQALELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRA 730
               L  +   E    +K ++  GY P SEP+LSM+L   +E++L ++R + +I +P GR 
Sbjct: 679  LSVLGKLGGSETKTAVKMLLQ-GYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRV 738

Query: 731  MMGCLDETGNLEYGEVFVQCSAHQQLHND-HIIFKRSKSNQHFIVTGTVVVAKNPCLHPG 790
            ++GCLDETG LEYG+V+++ + + +   D +  +  +   +   V G V + KNPCLHPG
Sbjct: 739  LIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPG 798

Query: 791  DVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEP 850
            D+RVL A+  P L  MVDCLVFPQ+G RPHPNECSG DLDGD+YF+ WD  LIP +   P
Sbjct: 799  DIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTP 858

Query: 851  MDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLA 910
            MDYT    R++DH VT+EE+Q++F +YM+NDSLG I+ AH   AD  P KA S  C++LA
Sbjct: 859  MDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLA 918

Query: 911  KLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFR-MLDDIEPRI 970
             L S+AVDF KTG PA +   LR + YPDFM++ +K  Y S+ VLGKL+R  +  +E   
Sbjct: 919  TLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSG 978

Query: 971  SIKSVKFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELIS 1030
               ++  +       YDPD+EV G +E+L  A  +   Y+ +L  LM YY+ + E E+++
Sbjct: 979  DSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILT 1038

Query: 1031 GVSLTKSSSFTKKNE-----AESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAW 1090
            G    K     + N+      + I+ AV +L +EARGW      L    + +A   ASAW
Sbjct: 1039 GNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWL-----LSSRKEEDASRMASAW 1098

Query: 1091 YFVTYHYSYWGWYGEKNESHFLSFPWCVYDKLIRIKKRKIGARARHR 1115
            Y VTYH         +    F SFPW   D L+ IK      R R +
Sbjct: 1099 YRVTYHPD------RRRGKRFWSFPWIACDNLLAIKASSQLRRRRQK 1122

[Close]

BLAST of Cp4.1LG01g05940 vs. Swiss-Prot
Match: RDR6_ARATH (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 2.5e-166
Identity = 392/1078 (36.36%), Postives = 573/1078 (53.15%), Query Frame = 1


Query: 95   YNFKGLELHLGCQISREEFFVLWRESNVSVNFEFERRDLKFFISHSHA------------ 154
            Y   G+ L +G  +SR++FFV WR   V    +      KF    S A            
Sbjct: 130  YKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVI 189

Query: 155  --DYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIYER--DTKLFGHISEDPFLSF 214
              DY L L   +I  V  +K     +  L++QL  +PR++ R  D  ++  +  D     
Sbjct: 190  NCDYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVWYRTADDDIYDTVPGDLL--- 249

Query: 215  SKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDKFA----YFKEIKGKFTLA 274
              + D  W R TDFT    IG+  +  + I      P + +K      YF+  + +    
Sbjct: 250  --DDDDPWIRTTDFTQVGAIGRCHSYRVLIS-----PRYENKLRTALDYFRMRRVQ---E 309

Query: 275  SGSTYSSNVNLVPVVRPPLSIH---------LPYAILFKINLLVQQGCLPGPALDISFYE 334
                +   +   P    P+S H         + + I+F +N ++ +G      L   F++
Sbjct: 310  ERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFD 369

Query: 335  MV--DPQIHNIAFIDRAL---RKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 394
            ++   P+  NIA +       R ++D     Y   K + E  +K  KL    +       
Sbjct: 370  LLRNQPKDVNIASLKHLCTYKRPVFD----AYKRLKLVQEWIQKNPKLLGSHEQ-----S 429

Query: 395  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 454
            E +  + R+ +TP R Y   PEV +SNRVLRRY    + FLRV+F+DE +  + S  LS 
Sbjct: 430  EDISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSY 489

Query: 455  RESSSLED-------GKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPR 514
              +  ++D        KT +FKR+ S+L DG  +  +K+ FLA+S++QLR+ + W FA  
Sbjct: 490  FVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAED 549

Query: 515  DGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEV-IPDIEVKSDAG 574
                 + I+ WMG F   +NVAK AAR+G  F S+  T  V   EV+  +PDIE      
Sbjct: 550  GKTRVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERN---- 609

Query: 575  INYVFSDGIGKISASFAREVARKCR--IRHTPSAFQIRYAGFKGVISVDPTSF--VKLSL 634
              YVFSDGIG I+   A EV  K +  + ++P A+QIRYAGFKGV++  P+    ++L+L
Sbjct: 610  -GYVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLAL 669

Query: 635  RNSMLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIF 694
            R+SM K+ S  T L++ SW+R+ P +LNRQ+ITLLS LGV D+IF   Q+ ++ +L+ I 
Sbjct: 670  RDSMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRIL 729

Query: 695  MDPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIF 754
             D   A + L   S  E  N    ++S G++P +EP L  ML + R ++L  LR KSRIF
Sbjct: 730  DDTDVAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIF 789

Query: 755  IPNGRAMMGCLDETGNLEYGEVFVQCS--AHQQLHNDH-IIFKRSKSNQHFIVTGTVVVA 814
            + +GR +MGCLDE G LE+G+ F+Q S  + +   + H   FK +K++   +V G V +A
Sbjct: 790  VTSGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLE-VVKGYVAIA 849

Query: 815  KNPCLHPGDVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDL 874
            KNPCLHPGDVR+L AVDVP LHHM DCL+FPQKG RPH NE SGSDLDGD+YFV WD  L
Sbjct: 850  KNPCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKL 909

Query: 875  IPP--QQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEK 934
            IPP  +    M Y     + L   V  +++ ++FA  + N+ LG I NAH   AD     
Sbjct: 910  IPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYG 969

Query: 935  AMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFR 994
            AM E C+ LA+L + AVDFPKTG    +   L+ ++YPDFM K D Q+YKS+ +LG+L+R
Sbjct: 970  AMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYR 1029

Query: 995  MLDDIEPRISIKSVKFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYK 1054
             + ++    +  S + + + +   YD  +E+ GFE+ + +A  HK  YD +L  L+  YK
Sbjct: 1030 RVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYK 1089

Query: 1055 IKTEAELISG--VSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNE----NAGLHFGHD 1106
            ++ E E+++G   S+ K +S  +    E +  +  SL+KE R  F E    +  L     
Sbjct: 1090 VQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEK 1149

[Close]

BLAST of Cp4.1LG01g05940 vs. TrEMBL
Match: E9NWK7_CUCSA (RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=Csa_5G239640 PE=2 SV=1)

HSP 1 Score: 1918.7 bits (4969), Expect = 0.0e+00
Identity = 935/1115 (83.86%), Postives = 1010/1115 (90.58%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+   DYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREV+VIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVL 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of Cp4.1LG01g05940 vs. TrEMBL
Match: H3K3Y9_CUCSA (RNA-dependent RNA polymerase 1 OS=Cucumis sativus GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1906.3 bits (4937), Expect = 0.0e+00
Identity = 930/1115 (83.41%), Postives = 1006/1115 (90.22%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F F+ R L FFIS+   DYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEI YGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKI KRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQ FGSSTET SVSRREV+VIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVF QCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVL 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of Cp4.1LG01g05940 vs. TrEMBL
Match: A0A0S1YCZ7_CUCSA (RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=RDR1b PE=2 SV=1)

HSP 1 Score: 1905.2 bits (4934), Expect = 0.0e+00
Identity = 931/1115 (83.50%), Postives = 1006/1115 (90.22%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+   DYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPS WL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSIWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRR P+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRCPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREV+VIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLIT LSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITFLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVL 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFP CVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPRCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of Cp4.1LG01g05940 vs. TrEMBL
Match: B9HJH7_POPTR (RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s13550g PE=4 SV=1)

HSP 1 Score: 1436.4 bits (3717), Expect = 0.0e+00
Identity = 711/1118 (63.60%), Postives = 865/1118 (77.37%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            M KT+++ GFPS     +V+ F+E  TG G+++A+ ++  R  G R YAI+QF     A+
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IISLAN  L YG SYL AR   +DI+  P  F +  + + LH G Q S+E+F  +W  +
Sbjct: 61   QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSVNF    R L FF+SH+ A+Y L L +ENIWQ+ELH+P GQ++ YLLIQL GAPRIY
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
            ERD     ++ EDP L++ +++ D +W R TDFTPSC IG S +LCLE+P    LPNF++
Sbjct: 181  ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240

Query: 241  KFAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPAL 300
             F Y+KE +G F L SG T+S N +LVP+V P   ++LPY ILF++NLLVQ GCL G  L
Sbjct: 241  NFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSML 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D  FY +VDP    +  I+ AL KLY LKECCY PSKW  E+Y+KY    NPP+ P LSL
Sbjct: 301  DDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELS 420
            D GLVYV++VQ+TPC+V+FCGPEVNVSNRVLR+Y E +DNFLRVSFVDEEL+K++ST++S
Sbjct: 361  DAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVS 420

Query: 421  PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
            PR SS  E  +T I+ RILS L++GI IGDKKFEFLA+SSSQLREN+ WMFA R G+TAA
Sbjct: 421  PRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSD 540
             IR WMG FH IRNVA+YAARLGQSFGSSTET SVS  E+E+IPDIEV S  G  Y+FSD
Sbjct: 481  DIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEV-SRGGTRYLFSD 540

Query: 541  GIGKISASFAREVARKCRIR-HTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKISA FAR+VA KC  +  TPSAFQIRYAG+KGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 600

Query: 601  DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
            +TKLDVL+ S+Y PC+LNRQLITLLSTLGV D  FE KQ+E +DQLD +  DPL+AQ+AL
Sbjct: 601  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
            ELMSPGENTNILKE++ CGY+PD+EPFLSMML TFR SKLLELR K+RIFIPNGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 720

Query: 721  LDETGNLEYGEVFVQCSA--HQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVR 780
            LDET  LE+G+VFV+ S    + L++   +F      Q +++ G+VVVAKNPCLHPGD+R
Sbjct: 721  LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 780

Query: 781  VLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 840
            +L AVDVP+LHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYFVCWDP+LIP QQ+ PMDY
Sbjct: 781  ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 840

Query: 841  TPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLF 900
            TP     LDHDVT+EEV+EYF NY+VNDSLG+IANAHTA AD    KAMSEPC++LA+ F
Sbjct: 841  TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 900

Query: 901  SIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIK 960
            SIAVDFPKTGVPA I ++LR + YPDFM+KPDK SY+S NV+GKLFR + DI PR  SI+
Sbjct: 901  SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 960

Query: 961  SVKFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVS 1020
            S  FT ++ARQ YDPDMEVDGFE+Y+DDA Y+K+NYD +LGNLM+YY IKTEAEL+SG  
Sbjct: 961  S--FTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1020

Query: 1021 LTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYS 1080
            +  S SFTKK +AE+I MAV+SL+KEAR WFNE         ++  A+ASAWY VTYH++
Sbjct: 1021 MKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1080

Query: 1081 YWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGARAR 1113
            YWG Y E  N  HFLSFPWCVYDKLI+IK+R   AR R
Sbjct: 1081 YWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRN-SARIR 1114

[Close]

BLAST of Cp4.1LG01g05940 vs. TrEMBL
Match: A0A061EGF4_THECC (RNA-dependent RNA polymerase 1 isoform 1 OS=Theobroma cacao GN=TCM_011292 PE=4 SV=1)

HSP 1 Score: 1428.3 bits (3696), Expect = 0.0e+00
Identity = 709/1114 (63.64%), Postives = 858/1114 (77.02%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQ+  FPS V  E VK F+E +TG+ ++ A+ +++ +  G R YAI+QF     A+
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG-RAYAIVQFTKSTDAE 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
            LII L N  L YG+SYLKARE + DI+  P  F +  +G+ LH GCQ+S E+F+VLW E 
Sbjct: 61   LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEV 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            +V+VNF    R L+F +SH   +Y L L YENIWQ+ELH+P  Q+  YLLIQL GAPRIY
Sbjct: 121  DVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
            E+D +  G + E+P L++  ++ D +W R TDFT S CIGQS  LCLE+PY   LPNF +
Sbjct: 181  EKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRE 240

Query: 241  KFAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPAL 300
             FAY+KE +GKF L SGS+YS N+NLVP+V P L I LPY ILFKINLLVQ GC+PGPAL
Sbjct: 241  NFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPAL 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D +FY +V+P   +  +ID AL KLY LKECC+ PSKWL E+Y+ Y      P  P +SL
Sbjct: 301  DANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELS 420
            D+GLV V RVQ+TP RVYFCGPE+NVSNRVLR + + +DNFLR++FVDEEL+K++ST+L 
Sbjct: 361  DDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLL 420

Query: 421  PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
             R         T+I+ RILS LK+GI IGDK+FEFLA+SSSQLREN+ WMFA R+G+TAA
Sbjct: 421  TRNRI------TEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSD 540
             IR WMG+F  IRNVAKYAARLGQSF SSTET SV++ E+E+I D+E+K D GINYVFSD
Sbjct: 481  DIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRD-GINYVFSD 540

Query: 541  GIGKISASFAREVARKCRIR-HTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKISA FA++VA KCR+   TPSAFQIR  GFKGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESE 600

Query: 601  DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
            +TKLDVL+WS+Y PC+LNRQLITLLSTLGV D  FE KQ+E++DQL+ I  DPLKAQ+AL
Sbjct: 601  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
            ELMSPGENTNILKE++ CGY PD+EPFLSMML TFR SKLLELR KSRIF+ NGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGC 720

Query: 721  LDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVL 780
            LDET  L+YG+VFVQ S              S+S Q FIV G VVVAKNPCLHPGDVRVL
Sbjct: 721  LDETRTLDYGQVFVQVSG-------------SRSEQRFIVQGKVVVAKNPCLHPGDVRVL 780

Query: 781  TAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
            TAV+VP LHHMVDC+VFPQKG RPHPNECSGSDLDGDIYFVCWDP+LIP +Q+ PMDY+P
Sbjct: 781  TAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSP 840

Query: 841  VLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSI 900
              ++ L+H+VT+EEV+EYF NY+VNDSLGIIANAHT FAD  P KAMS  C  LAKLFSI
Sbjct: 841  APTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSI 900

Query: 901  AVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEP-RISIKSV 960
            AVDFPKTGVPA I  +LRV+ YPDFM+KPDK +Y+S+NV+GKLFR + D+ P    I+S+
Sbjct: 901  AVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSL 960

Query: 961  KFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLT 1020
              TRE   + YDPDMEVDG+E+Y+DDA YHK+NYD +LGNLM+YY IKTEAE++SG  + 
Sbjct: 961  --TRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMK 1020

Query: 1021 KSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYW 1080
             S SFTK+ +AE+I +AV+SLRKEAR WFNE         ++ YA+ASAWY VTYH SYW
Sbjct: 1021 MSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYW 1080

Query: 1081 GWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1111
            G Y E  N +HFLSFPWCVYDKLI IKK+    R
Sbjct: 1081 GLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRR 1091

[Close]

BLAST of Cp4.1LG01g05940 vs. TAIR10
Match: AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)

HSP 1 Score: 1327.4 bits (3434), Expect = 0.0e+00
Identity = 674/1121 (60.12%), Postives = 827/1121 (73.77%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQ++GFP+GV  E VK F+ER TG G++ AI V++ +  G R+YAI+QF  +   +
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
            LII+ A   L YG SYLKA E +QDI+  P    +   GL++  GCQ+S ++F  LW   
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            +V V+F    R L F  S    DY L L YENIWQ++LH P G+S  +L+IQ++GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ERDTK----LFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPN 240
            E++ +    LFG +       +S   D +W R TDFT S CIGQS A CLE+P    +P+
Sbjct: 181  EKEDQPINLLFGIMD-----FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 240

Query: 241  FHDKFAYFKEIKGK-FTLASGSTYSSNVN-LVPVVRPPLSIHLPYAILFKINLLVQQGCL 300
            F + FA + E +   F + SGS+YSSN N LVPVV PP    LP+ ILFK+N LVQ  CL
Sbjct: 241  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 300

Query: 301  PGPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQP 360
             GPALD+ FY +++ + ++ A ID  L KL+ L ECCY P+ WL +EY+K+      P  
Sbjct: 301  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 360

Query: 361  PNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLY 420
            P +SLD+GLVY++RVQVTP RVYF GPEVNVSNRVLR Y +Y++NFLRVSFVDE+L+K+ 
Sbjct: 361  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 420

Query: 421  STELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRD 480
            S +LSPR S+     +TK++ RI SVL+DGI IGDKKFEFLA+SSSQLREN+ WMFAP D
Sbjct: 421  SMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 480

Query: 481  GITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGIN 540
             ITAA IR WMGDF  IRNVAKYAARLGQSF SS ET +V   E+EVIPD+E+ S  G  
Sbjct: 481  RITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS-LGTR 540

Query: 541  YVFSDGIGKISASFAREVARKCRI-RHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSML 600
            YVFSDGIGKISA FAR+VARKC +   +PSAFQIRY G+KGV++VDP S  KLSLR SM 
Sbjct: 541  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 600

Query: 601  KYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLK 660
            K+ES +TKLDVL+WS+Y PCY+NRQLITLLSTLGV D +FE KQ+E++D+LD I   PL+
Sbjct: 601  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 660

Query: 661  AQQALELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGR 720
            A +AL LM+PGENTNILK +I CGY+PD+EPFLSMML  FR SKLLELR K+RIFI  GR
Sbjct: 661  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 720

Query: 721  AMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPG 780
            +MMGCLDET  LEYG+V VQ S               +  + FI+TG VVVAKNPCLHPG
Sbjct: 721  SMMGCLDETRTLEYGQVVVQYS------------DPMRPGRRFIITGPVVVAKNPCLHPG 780

Query: 781  DVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEP 840
            DVRVL AV+VP+L+HMVDC+VFPQKG RPHPNECSGSDLDGDIYFVCWD +L+PP+  EP
Sbjct: 781  DVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEP 840

Query: 841  MDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLA 900
            MDYTP  +++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFAD  P KA S+PCI+LA
Sbjct: 841  MDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELA 900

Query: 901  KLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDD-IEPRI 960
            K FS AVDFPKTGV A+I   L V+ YPDFM+KPDK +Y+S NV+GKLFR + +   P I
Sbjct: 901  KKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLI 960

Query: 961  SIKSVKFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELIS 1020
            SIKS  FT ++A ++YD DMEVDGFEEY+D+A Y K NYD +LGNLM YY IKTEAE++S
Sbjct: 961  SIKS--FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILS 1020

Query: 1021 GVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTY 1080
            G  +  S SFTK+ +AESI  AV++LRKE    FN +       + N  A+ASAWY VTY
Sbjct: 1021 GGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASE-----EEENESAKASAWYHVTY 1080

Query: 1081 HYSYWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGARAR 1113
            H SYWG Y E  N  HFLSF WCVYDKL+RIKK  +G R R
Sbjct: 1081 HSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQR 1093

[Close]

BLAST of Cp4.1LG01g05940 vs. TAIR10
Match: AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)

HSP 1 Score: 743.4 bits (1918), Expect = 2.0e-214
Identity = 423/1125 (37.60%), Postives = 654/1125 (58.13%), Query Frame = 1


Query: 4    TIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGK-RLYAIIQFID-DVGAKL 63
            T+++   P  ++ + +  F+E   GE ++ A+ +  +R   K R +A +QF   +V ++ 
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   IISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREE-FFVLWRES 123
             +  + + L + T  L+  E   DI+  P+        + L +G   S E+ F  L +  
Sbjct: 71   QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 124  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQS--IDYLLIQLVGAPR 183
             V      E+R ++F++  S   Y + +R+E+I +       G +  ID  L++L   P+
Sbjct: 131  GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190

Query: 184  IYERDT-KLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNF 243
            +++R T  +      D +    ++ D  W R TDF+ S  IG S   CLE+  G  + + 
Sbjct: 191  VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250

Query: 244  HDKFAYFKEIKGKFTLASGSTYSSNVNLVPVVRPP-LSIHLPYAILFKINLLVQ-QGCLP 303
                 Y++E     T   G T++S   +VP++    L +  PY ILF++N LV  Q    
Sbjct: 251  FSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISL 310

Query: 304  GPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLT--NPPQ 363
              A D+   +++       A +   L+KL+     CY+P  ++  + +   K    +P  
Sbjct: 311  FAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPAS 370

Query: 364  PPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKL 423
                  ++ ++   R  VTP ++Y  GPE+  +N V++ + E++ +F+RV+FV+E+  KL
Sbjct: 371  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 430

Query: 424  YSTELS--PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFA 483
             +  LS   +E   ++  +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR N+VWMFA
Sbjct: 431  PANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 490

Query: 484  PRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDA 543
              + + A  IR+WMG F  IR+++K AAR+GQ F +S +T  V  ++VE IPDIEV +D 
Sbjct: 491  SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTD- 550

Query: 544  GINYVFSDGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNS 603
            G +Y FSDGIGKIS +FA++VA+KC + H PSAFQIRY G+KGVI+VD +SF KLSLR+S
Sbjct: 551  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 610

Query: 604  MLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDP 663
            MLK++S +  L+V  W+   PC+LNR++I LLSTLG++D +FE+ Q   +  L  +  D 
Sbjct: 611  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 670

Query: 664  LKAQQALELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPN 723
              A   L+ +S   + N+L +++  GY P SEP+LSMML    ES+L EL+ + RI +P 
Sbjct: 671  DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 730

Query: 724  GRAMMGCLDETGNLEYGEVFVQCS-AHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCL 783
            GR ++GC+DE G LEYG+V+V+ +    +L +    + R    +  +V G VVV KNPCL
Sbjct: 731  GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 790

Query: 784  HPGDVRVLTAVDVPSLHH--MVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP 843
            HPGD+RVL A+          +DC++FPQKG RPHPNECSG DLDGD +FV WD  +IP 
Sbjct: 791  HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 850

Query: 844  QQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEP 903
            +   PMDY     RL+DHDVT+EE+ ++F +YM++D+LG+I+ AH   AD  PEKA S+ 
Sbjct: 851  EMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQK 910

Query: 904  CIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDI 963
            C++LA L S AVDF KTG PA +   L+ + +PDF+++ +K +Y S +V GKL+R     
Sbjct: 911  CLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYR----- 970

Query: 964  EPRISIKSVKFTREIARQ-----AYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYK 1023
                ++KS    R+   +     AYD  +E  GFE +++ A  H++ Y  +L +LM YY 
Sbjct: 971  ----AVKSSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYG 1030

Query: 1024 IKTEAELISGVSLTKSSSFTKKNE-----AESIIMAVKSLRKEARGWFNENAGLHFGHDN 1083
               E E+++G+  TK     + N       + I ++VK L KEA GWF ++       + 
Sbjct: 1031 AANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSC----EDEQ 1090

Query: 1084 NAYARASAWYFVTYHYSYWGWYGEKNESHFLSFPWCVYDKLIRIK 1104
                 ASAWY+VTY+ ++        +  FLSFPW V D L+ IK
Sbjct: 1091 QKKKLASAWYYVTYNPNH-----RDEKLTFLSFPWIVGDVLLDIK 1114

[Close]

BLAST of Cp4.1LG01g05940 vs. TAIR10
Match: AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)

HSP 1 Score: 587.8 bits (1514), Expect = 1.4e-167
Identity = 392/1078 (36.36%), Postives = 573/1078 (53.15%), Query Frame = 1


Query: 95   YNFKGLELHLGCQISREEFFVLWRESNVSVNFEFERRDLKFFISHSHA------------ 154
            Y   G+ L +G  +SR++FFV WR   V    +      KF    S A            
Sbjct: 130  YKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVI 189

Query: 155  --DYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIYER--DTKLFGHISEDPFLSF 214
              DY L L   +I  V  +K     +  L++QL  +PR++ R  D  ++  +  D     
Sbjct: 190  NCDYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVWYRTADDDIYDTVPGDLL--- 249

Query: 215  SKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDKFA----YFKEIKGKFTLA 274
              + D  W R TDFT    IG+  +  + I      P + +K      YF+  + +    
Sbjct: 250  --DDDDPWIRTTDFTQVGAIGRCHSYRVLIS-----PRYENKLRTALDYFRMRRVQ---E 309

Query: 275  SGSTYSSNVNLVPVVRPPLSIH---------LPYAILFKINLLVQQGCLPGPALDISFYE 334
                +   +   P    P+S H         + + I+F +N ++ +G      L   F++
Sbjct: 310  ERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFD 369

Query: 335  MV--DPQIHNIAFIDRAL---RKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 394
            ++   P+  NIA +       R ++D     Y   K + E  +K  KL    +       
Sbjct: 370  LLRNQPKDVNIASLKHLCTYKRPVFD----AYKRLKLVQEWIQKNPKLLGSHEQ-----S 429

Query: 395  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 454
            E +  + R+ +TP R Y   PEV +SNRVLRRY    + FLRV+F+DE +  + S  LS 
Sbjct: 430  EDISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSY 489

Query: 455  RESSSLED-------GKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPR 514
              +  ++D        KT +FKR+ S+L DG  +  +K+ FLA+S++QLR+ + W FA  
Sbjct: 490  FVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAED 549

Query: 515  DGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEV-IPDIEVKSDAG 574
                 + I+ WMG F   +NVAK AAR+G  F S+  T  V   EV+  +PDIE      
Sbjct: 550  GKTRVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERN---- 609

Query: 575  INYVFSDGIGKISASFAREVARKCR--IRHTPSAFQIRYAGFKGVISVDPTSF--VKLSL 634
              YVFSDGIG I+   A EV  K +  + ++P A+QIRYAGFKGV++  P+    ++L+L
Sbjct: 610  -GYVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLAL 669

Query: 635  RNSMLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIF 694
            R+SM K+ S  T L++ SW+R+ P +LNRQ+ITLLS LGV D+IF   Q+ ++ +L+ I 
Sbjct: 670  RDSMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRIL 729

Query: 695  MDPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIF 754
             D   A + L   S  E  N    ++S G++P +EP L  ML + R ++L  LR KSRIF
Sbjct: 730  DDTDVAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIF 789

Query: 755  IPNGRAMMGCLDETGNLEYGEVFVQCS--AHQQLHNDH-IIFKRSKSNQHFIVTGTVVVA 814
            + +GR +MGCLDE G LE+G+ F+Q S  + +   + H   FK +K++   +V G V +A
Sbjct: 790  VTSGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLE-VVKGYVAIA 849

Query: 815  KNPCLHPGDVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDL 874
            KNPCLHPGDVR+L AVDVP LHHM DCL+FPQKG RPH NE SGSDLDGD+YFV WD  L
Sbjct: 850  KNPCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKL 909

Query: 875  IPP--QQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEK 934
            IPP  +    M Y     + L   V  +++ ++FA  + N+ LG I NAH   AD     
Sbjct: 910  IPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYG 969

Query: 935  AMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFR 994
            AM E C+ LA+L + AVDFPKTG    +   L+ ++YPDFM K D Q+YKS+ +LG+L+R
Sbjct: 970  AMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYR 1029

Query: 995  MLDDIEPRISIKSVKFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYK 1054
             + ++    +  S + + + +   YD  +E+ GFE+ + +A  HK  YD +L  L+  YK
Sbjct: 1030 RVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYK 1089

Query: 1055 IKTEAELISG--VSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNE----NAGLHFGHD 1106
            ++ E E+++G   S+ K +S  +    E +  +  SL+KE R  F E    +  L     
Sbjct: 1090 VQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEK 1149

[Close]

BLAST of Cp4.1LG01g05940 vs. TAIR10
Match: AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-27
Identity = 174/722 (24.10%), Postives = 287/722 (39.75%), Query Frame = 1


Query: 321 LRKLYDLKECCYNPSKW--LGEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTPCRVY- 380
           +RK  DL    Y  + W  LG+ Y    +   P     L  D G+ + ++  V     Y 
Sbjct: 173 IRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRP-----LEGDSGMTHYYQCHVATDGSYK 232

Query: 381 FCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRI 440
           F G  +  +   L +     DN L V F     DK+   E    +  S   G        
Sbjct: 233 FKGHLLENTGTHLHKVLGD-DNVLTVKF-----DKVLGVETYCNDLYSTYKG-------- 292

Query: 441 LSVLKDGITIGDKKFEFLAYSSSQLREN-------AVWMFAPRDGITAA----------- 500
             + K+GI +G +++ F  +      E         V  +  R   TA+           
Sbjct: 293 --IAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAG 352

Query: 501 ----KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREV--EVIPDI-------- 560
               + R      +++ ++  Y +R      S T+T  V    +  E I DI        
Sbjct: 353 KSMHEARMHFMHVNTLSSLPNYMSRFSLIL-SKTKTLEVDMTGITFEQIDDIHCHDQDDK 412

Query: 561 EVKSDAGINYVFSDGIGKISASFAREV------ARKCRIRHTPSA--------------- 620
           +V    G   + SDG G IS   AR         +  R  +  S                
Sbjct: 413 DVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCGQEPP 472

Query: 621 ----FQIRYAGF--KGVISVDPTSFVK-LSLRNSMLK-YE-------STDTKLDVLSWSR 680
               F+I Y G+  KG    +     + + +R SM+K YE       ST   L+V++ S 
Sbjct: 473 LLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSN 532

Query: 681 Y-HPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALELMSPGENTN 740
                 L+R L+ LLS  GV +D F +  +  +++  TIF     A +A       + T 
Sbjct: 533 PPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYT- 592

Query: 741 ILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLEYG 800
              ++I  G  P  EP+L   L    +++   L+   R  I     +MG +D TG L+  
Sbjct: 593 --ADMILVGI-PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKEN 652

Query: 801 EVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHH 860
           E+ V   + Q                   ++G V+V +NP LH GD+ VL A  V +L  
Sbjct: 653 EICVILHSGQ-------------------ISGDVLVYRNPGLHFGDIHVLKATYVKALED 712

Query: 861 MVD----CLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP-QQVEPMDYTPVLSRL 920
            V      + FPQKGPR   +E +G D DGD+YF+  +P L+   +  EP   +   S++
Sbjct: 713 YVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKI 772

Query: 921 --------LDHDVTMEEVQEYF--ANYMVNDSLGIIANAHTAFAD---------SRPEKA 947
                   L  +   EE+ + F  A +   D +G+ A+      D         ++ +  
Sbjct: 773 YCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYE 832

[Close]

BLAST of Cp4.1LG01g05940 vs. TAIR10
Match: AT2G19920.1 (AT2G19920.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 120.6 bits (301), Expect = 6.3e-27
Identity = 181/724 (25.00%), Postives = 292/724 (40.33%), Query Frame = 1


Query: 321 LRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTP-----CR 380
           +R+  DL    Y  + W         KL    +   L  D G  + ++  V P      +
Sbjct: 178 IRQWKDLPMVAYERAVWF--------KLGQNEERMQLESDSGKTHYYQCHVAPDGSYRLK 237

Query: 381 VYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFK 440
            YF        ++VL       DN L V F     D+L      P+ES+  ++  +K +K
Sbjct: 238 GYFLENTGTHLHKVLGD-----DNVLTVRF-----DQL------PKESTYCDNPYSK-YK 297

Query: 441 RILSVLKDGITIGDKKFEFLAYSSSQLRENA-------VWMFAPRDGITAA--------- 500
            I    K+GI +G ++++F  +      E         V  +  R G TA+         
Sbjct: 298 EIA---KNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPYIL 357

Query: 501 ------KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEV--IPDI------ 560
                 + R      H++ + A Y AR      S T+   V   E+ V  I DI      
Sbjct: 358 SGMSIHEARMHFMHVHTLPSPANYMARFSLIL-SKTKKLEVDMTEITVMQIDDIHCHDQS 417

Query: 561 --EVKSDAGINYVFSDGIGKISASFAR---------------EVARKCRIRHTPSAFQ-- 620
             +V    G   + SDG G IS   AR                +   C ++  P   Q  
Sbjct: 418 NNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTC-VQEPPLLIQIR 477

Query: 621 --IRYAGFKGVISVD---PTSFVKLSLRNSMLKYE--------STDTKLDVLSWSRYHP- 680
                +  KG+  ++   P   V++  R SM+K          ST   L+V++ S     
Sbjct: 478 MFNDGSAVKGIFLLNKNLPPQTVQV--RPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKR 537

Query: 681 CYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALELMSPGENTNILKE 740
             L++ L+ LLS  GV +D F       +++  TIF     A +A       ++ N L +
Sbjct: 538 AKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-Q 597

Query: 741 IISCGYRPDSEPFLSMMLHTFRESKLLELRRKS----RIFIPNGRAMMGCLDETGNLEYG 800
           +I  G  P  EP+L   L     SKLL+L +      ++ I     +MG +D TG L+  
Sbjct: 598 MIMAGI-PLDEPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKED 657

Query: 801 EVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHH 860
           EV     +                         V+V +NP LH GD+ +L A  V SL  
Sbjct: 658 EVSGLAKSQD-----------------------VLVYRNPGLHFGDIHILKATYVKSLEQ 717

Query: 861 MVDC----LVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMD--------- 920
            V      + FPQKGPR   +E +G D DGD+YF+  +P L+  +  +P +         
Sbjct: 718 YVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLL--EHYKPSEPWVSSSPRS 777

Query: 921 --YTPVLSRLLDHDVTMEEVQEYF--ANYMVNDSLGIIANAHTAFAD--------SRPEK 947
             YT      L  +   EE+ + F    +  +  +G  A++  A  D        +  EK
Sbjct: 778 KIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEK 835

[Close]

BLAST of Cp4.1LG01g05940 vs. NCBI nr
Match: gi|525507284|ref|NP_001267682.1| (RNA-dependent RNA polymerase 1-like [Cucumis sativus])

HSP 1 Score: 1918.7 bits (4969), Expect = 0.0e+00
Identity = 935/1115 (83.86%), Postives = 1010/1115 (90.58%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+   DYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREV+VIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVL 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of Cp4.1LG01g05940 vs. NCBI nr
Match: gi|377347180|dbj|BAL63010.1| (RNA-dependent RNA polymerase 1 [Cucumis sativus])

HSP 1 Score: 1906.3 bits (4937), Expect = 0.0e+00
Identity = 930/1115 (83.41%), Postives = 1006/1115 (90.22%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F F+ R L FFIS+   DYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEI YGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKI KRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQ FGSSTET SVSRREV+VIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVF QCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVL 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of Cp4.1LG01g05940 vs. NCBI nr
Match: gi|948561977|gb|ALM88234.1| (RNA-dependent RNA polymerase 1b [Cucumis sativus])

HSP 1 Score: 1905.2 bits (4934), Expect = 0.0e+00
Identity = 931/1115 (83.50%), Postives = 1006/1115 (90.22%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+   DYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPS WL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSIWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRR P+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRCPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREV+VIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLIT LSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITFLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVL 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFP CVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPRCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of Cp4.1LG01g05940 vs. NCBI nr
Match: gi|1009154798|ref|XP_015895367.1| (PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba])

HSP 1 Score: 1468.0 bits (3799), Expect = 0.0e+00
Identity = 726/1118 (64.94%), Postives = 874/1118 (78.18%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MG+TIQ+ GFPS V  E VK F+E  TGEG++ AI +++ +  G R YAI+QF     A+
Sbjct: 1    MGRTIQVSGFPSSVSAELVKKFLENLTGEGTVYAIKLRKFKNGG-RYYAIVQFTSTRDAE 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IISLA A L YGTSYL AR    DI+  P  + ++ + + LH GCQIS+E+F VLW+  
Sbjct: 61   FIISLAGARLWYGTSYLTARSMDTDIVAKPRTYLHSLENITLHFGCQISKEKFSVLWKRE 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F    R L F   + + +Y L L YENIWQ+ELH+P GQ++ YLLIQL GAPRIY
Sbjct: 121  NVSVDFGIGLRRLHFHFMYQYVEYKLQLSYENIWQIELHRPLGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
            E+D    G + EDP  +F K+  D +W RATDFTPSC IGQS ALCLE+P G  LPNF +
Sbjct: 181  EKDVPSSGDVYEDPIFNFFKDTPDDQWVRATDFTPSCRIGQSSALCLELPSGPRLPNFKE 240

Query: 241  KFAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPAL 300
             FAY+KE +G+F+L +G  +S N+ LVP+V PPL +HLPY I+FKIN L+QQGCL GP+L
Sbjct: 241  NFAYYKESEGRFSLETGFPFSCNLYLVPIVGPPLDVHLPYDIIFKINALLQQGCLTGPSL 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D +FY +VDP+  N+A I+ AL KLY+LKECCY PS WL E+YRKY K   PP+ P +SL
Sbjct: 301  DAAFYRLVDPRRINVACIEHALDKLYNLKECCYEPSTWLNEQYRKYFKSKRPPKSPMISL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELS 420
            D GLVYV RVQ+TPC+VYF GPE+NVSNRVLR YP ++DNFLRVSFVDEELDK+YST+LS
Sbjct: 361  DAGLVYVRRVQITPCKVYFFGPEINVSNRVLRHYPNHIDNFLRVSFVDEELDKMYSTDLS 420

Query: 421  PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
            PR S++    KT ++KR+LSVL+DGI IG+KKFEFLA+SSSQLR+N+ WMFAP DGITAA
Sbjct: 421  PRNSAT----KTGLYKRVLSVLRDGIIIGNKKFEFLAFSSSQLRDNSTWMFAPSDGITAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSD 540
             IR+WMGDF  IRNVAKYAARLGQSFGSSTET SVSR EVE IPDIEV    G+ Y FSD
Sbjct: 481  DIREWMGDFRQIRNVAKYAARLGQSFGSSTETLSVSRHEVEKIPDIEVVY-GGVKYAFSD 540

Query: 541  GIGKISASFAREVARKCRIRH-TPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKIS+ FAR+VA KC     TPSAFQIRY G+KGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISSEFARKVASKCGCNGVTPSAFQIRYGGYKGVVAVDPTSSFKLSLRKSMCKYESD 600

Query: 601  DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
            + KLDVL++S++ PC+LNRQLI+LLSTLGV+D +F  KQ + + QLD I  DPL+AQ+AL
Sbjct: 601  NIKLDVLAYSKFQPCFLNRQLISLLSTLGVEDQVFLKKQSKAVQQLDAILTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
            +LMSPGENTN+LKE++ CGY+PD+EP+LSMML TFR SKLLELR KSRIFIP+GRAMMGC
Sbjct: 661  DLMSPGENTNVLKELLMCGYKPDTEPYLSMMLQTFRASKLLELRTKSRIFIPDGRAMMGC 720

Query: 721  LDETGNLEYGEVFVQCSAHQ-QLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRV 780
            LDET  LEYG+VFVQ S  + +   D  +   + + Q FIVTG+VVVAKNPCLHPGDVRV
Sbjct: 721  LDETRTLEYGQVFVQFSGSRYRQFGDSPMLGGNGTKQRFIVTGSVVVAKNPCLHPGDVRV 780

Query: 781  LTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYT 840
            L AV+V  LHHMVDC+VFPQKG RPHPNECSGSDLDGDIYFVCWDP+LIP  Q+EPMDYT
Sbjct: 781  LRAVNVSELHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPCHQIEPMDYT 840

Query: 841  PVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFS 900
            P  S L D DVT+EEVQEYFANY+VNDSLGIIANAHT FAD    KAMS PC++LA+LFS
Sbjct: 841  PAPSMLKDDDVTIEEVQEYFANYIVNDSLGIIANAHTVFADKEYGKAMSSPCVELARLFS 900

Query: 901  IAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKS 960
            IAVDFPKTG+PA+I   L V+ YPDFM+KPDKQ+Y+S NV+GKLFR + DI P   SI+S
Sbjct: 901  IAVDFPKTGIPAVIPPHLHVKEYPDFMEKPDKQTYESQNVIGKLFREVKDIAPNTSSIRS 960

Query: 961  VKFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSL 1020
              FT E+AR++YDPDMEVDGFE+YLDDA Y+KN+YD +LGNL+ YY IKTEAE++SG  L
Sbjct: 961  --FTSEVARKSYDPDMEVDGFEDYLDDAYYYKNSYDYKLGNLLDYYGIKTEAEILSGSIL 1020

Query: 1021 TKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSY 1080
              S SFTK+ +AESI MAV++LRKEAR WFNE         ++ YA+ASAWY VTYH SY
Sbjct: 1021 RMSKSFTKRRDAESINMAVRALRKEARNWFNEKRSGGDFESDDLYAKASAWYHVTYHPSY 1080

Query: 1081 WGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
            WG Y E  N  H+LSF WCVYD+L+ IK+ K  +R RH
Sbjct: 1081 WGSYNEGMNRDHYLSFAWCVYDRLVEIKEDK-ASRRRH 1109

[Close]

BLAST of Cp4.1LG01g05940 vs. NCBI nr
Match: gi|743785128|ref|XP_011024314.1| (PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus euphratica])

HSP 1 Score: 1442.2 bits (3732), Expect = 0.0e+00
Identity = 712/1116 (63.80%), Postives = 865/1116 (77.51%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            M KT+Q+ GFPS     +V+ F+E +TG G+++A+ ++ +R RG R YAI+QF      +
Sbjct: 1    MSKTVQVSGFPSSATAGAVQVFLESYTGGGTVEALKIRETRTRGARKYAIVQFTTTRATE 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IISLAN  L YG SYL AR   +DI+  P    +  + + LH G Q S+E+F  +W  +
Sbjct: 61   QIISLANQRLWYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSVNF    R L FF+SH+ A+Y L L +ENIWQ+ELH+P GQ++ YLLIQL GAPRIY
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
            ER+     ++ EDP L++ +++ D +W R TDFTPSC IG S +LCLE+P    LPNF++
Sbjct: 181  EREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPNFNE 240

Query: 241  KFAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPAL 300
             F Y+KE +G F L SGST+S N +LVP+V P   ++LPY ILF++NLLVQ GCL G  L
Sbjct: 241  NFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSML 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D  FY +VDP    +  I+ AL KLY LKECCY PSKW  E+YRKY    NPP+ P LSL
Sbjct: 301  DDIFYRLVDPNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPVLSL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELS 420
            D GLVYV++VQ+TPC+V+FCGPEVN+SNRVLR+Y E +DNFLRVSFVDEEL+K++ST++S
Sbjct: 361  DAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHSTDVS 420

Query: 421  PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
            PR SS  E  +T I+ RILS L++GI IGDKKFEFLA+SSSQLREN+ WMFA R G+TAA
Sbjct: 421  PRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSD 540
             IR+WMG FH IRNVA+YAARLGQSF SSTET SVSR E+E+I DIEV S  G  Y+FSD
Sbjct: 481  DIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEV-SRGGTRYLFSD 540

Query: 541  GIGKISASFAREVARKCRIR-HTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKISA FAR+VA KC  +  TPSAFQIRYAG+KGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYESE 600

Query: 601  DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
            +TKLDVL+ S+Y PC+LNRQLITLLSTLGV D  FE KQ+E +DQLD I  DPL+AQ+AL
Sbjct: 601  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
             LMSPGENTNILKE++ CGY+PD+EPFLSMML TFR SKLLELR K+RIFIPNGR MMGC
Sbjct: 661  VLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMMGC 720

Query: 721  LDETGNLEYGEVFVQCSA--HQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVR 780
            LDET  LE+G+VFVQ S    + L++   +F      Q +++ G+VVVAKNPCLHPGDVR
Sbjct: 721  LDETRTLEHGQVFVQFSGSRFRNLYDSSDVFSERGRGQCYLIEGSVVVAKNPCLHPGDVR 780

Query: 781  VLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 840
            +L AVDVP+LHHMVDC+VFPQKGPRPHPN+CSGSDLDGDIYFVCWDP+LIP QQ+ PMDY
Sbjct: 781  ILKAVDVPALHHMVDCVVFPQKGPRPHPNQCSGSDLDGDIYFVCWDPELIPSQQISPMDY 840

Query: 841  TPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLF 900
            TP  +  LDHDVT+EEV+EYF NY+VNDSLGIIANAHTAFAD    KAMSEPC++LA+ F
Sbjct: 841  TPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELARKF 900

Query: 901  SIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIK 960
            SIAVDFPKTGVPA I ++LRV+ YPDFM+KPDK SY+S NV+GKLFR + DI PR  SI+
Sbjct: 901  SIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 960

Query: 961  SVKFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVS 1020
            S  FT ++ARQ YDPDMEVDGFE+Y+DDA Y+K+NYD +LGNLM+YY IKTEAEL+SG  
Sbjct: 961  S--FTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1020

Query: 1021 LTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYS 1080
            +  S SFTKK +AE+I MAV+SLRKEAR WFNE         ++  A+ASAWY VTYH++
Sbjct: 1021 MKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1080

Query: 1081 YWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1111
            YWG Y E  N  HFLSFPWC+YDKLI+IKK     R
Sbjct: 1081 YWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIR 1113

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g05940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDR1_ARATH	0.0e+00	60.12	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1	[more]
RDR1_ORYSJ	2.3e-260	61.44	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 ...	[more]
RDR2_ARATH	3.5e-213	37.60	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1	[more]
RDR2_ORYSJ	2.4e-201	37.18	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 ...	[more]
RDR6_ARATH	2.5e-166	36.36	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g05940 vs. TrEMBL


Match Name	E-value	Identity	Description
E9NWK7_CUCSA	0.0e+00	83.86	RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=Csa_5G239640 PE=2 SV=1	[more]
H3K3Y9_CUCSA	0.0e+00	83.41	RNA-dependent RNA polymerase 1 OS=Cucumis sativus GN=RDR1 PE=2 SV=1	[more]
A0A0S1YCZ7_CUCSA	0.0e+00	83.50	RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=RDR1b PE=2 SV=1	[more]
B9HJH7_POPTR	0.0e+00	63.60	RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s...	[more]
A0A061EGF4_THECC	0.0e+00	63.64	RNA-dependent RNA polymerase 1 isoform 1 OS=Theobroma cacao GN=TCM_011292 PE=4 S...	[more]

BLAST of Cp4.1LG01g05940 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14790.1	0.0e+00	60.12	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	2.0e-214	37.60	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	1.4e-167	36.36	RNA-dependent RNA polymerase 6	[more]
AT2G19910.1	2.2e-27	24.10	RNA-dependent RNA polymerase family protein	[more]
AT2G19920.1	6.3e-27	25.00	RNA-dependent RNA polymerase family protein	[more]

BLAST of Cp4.1LG01g05940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525507284\|ref\|NP_001267682.1\|	0.0e+00	83.86	RNA-dependent RNA polymerase 1-like [Cucumis sativus]	[more]
gi\|377347180\|dbj\|BAL63010.1\|	0.0e+00	83.41	RNA-dependent RNA polymerase 1 [Cucumis sativus]	[more]
gi\|948561977\|gb\|ALM88234.1\|	0.0e+00	83.50	RNA-dependent RNA polymerase 1b [Cucumis sativus]	[more]
gi\|1009154798\|ref\|XP_015895367.1\|	0.0e+00	64.94	PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba]	[more]
gi\|743785128\|ref\|XP_011024314.1\|	0.0e+00	63.80	PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003968	RNA-directed RNA polymerase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR007855	RNA-dep_RNA_pol_euk-typ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0009615	response to virus
biological_process	GO:0009617	response to bacterium
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0060148	positive regulation of posttranscriptional gene silencing
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0010025	wax biosynthetic process
biological_process	GO:0001172	transcription, RNA-templated
biological_process	GO:0007165	signal transduction
biological_process	GO:0051707	response to other organism
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0048519	negative regulation of biological process
biological_process	GO:0045087	innate immune response
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0071310	cellular response to organic substance
cellular_component	GO:0031379	RNA-directed RNA polymerase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003968	RNA-directed RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g05940.1	Cp4.1LG01g05940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 15..1114 score:
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 371..944 score: 6.5E
None	No IPR available	PANTHER	PTHR23079:SF9	RNA-DEPENDENT RNA POLYMERASE 1	coord: 15..1114 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g05940	Cucsa.143700	Cucumber (Gy14) v1	cgycpeB0388
Cp4.1LG01g05940	CmaCh04G000900	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g05940	CmoCh04G000870	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g05940	Cla002214	Watermelon (97103) v1	cpewmB411
Cp4.1LG01g05940	Csa5G239140	Cucumber (Chinese Long) v2	cpecuB438
Cp4.1LG01g05940	MELO3C005257	Melon (DHL92) v3.5.1	cpemeB361
Cp4.1LG01g05940	ClCG01G006600	Watermelon (Charleston Gray)	cpewcgB371
Cp4.1LG01g05940	ClCG07G005340	Watermelon (Charleston Gray)	cpewcgB410
Cp4.1LG01g05940	CSPI05G11790	Wild cucumber (PI 183967)	cpecpiB438
Cp4.1LG01g05940	Lsi04G009990	Bottle gourd (USVL1VR-Ls)	cpelsiB355
Cp4.1LG01g05940	MELO3C026815.2	Melon (DHL92) v3.6.1	cpemedB442
Cp4.1LG01g05940	CsaV3_5G011200	Cucumber (Chinese Long) v3	cpecucB0542
Cp4.1LG01g05940	Bhi07G000388	Wax gourd	cpewgoB0554
Cp4.1LG01g05940	Bhi12G000832	Wax gourd	cpewgoB0492
Cp4.1LG01g05940	CsGy5G009050	Cucumber (Gy14) v2	cgybcpeB647

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g05940	Cucurbita pepo (Zucchini)	cpecpeB374
Cp4.1LG01g05940	Cucumber (Gy14) v1	cgycpeB0478
Cp4.1LG01g05940	Cucurbita maxima (Rimu)	cmacpeB723
Cp4.1LG01g05940	Cucurbita moschata (Rifu)	cmocpeB675
Cp4.1LG01g05940	Wild cucumber (PI 183967)	cpecpiB423
Cp4.1LG01g05940	Cucumber (Gy14) v2	cgybcpeB636
Cp4.1LG01g05940	Silver-seed gourd	carcpeB0939
Cp4.1LG01g05940	Cucumber (Chinese Long) v3	cpecucB0552