CmaCh04G000900 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G000900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-dependent RNA polymerase 1b
Location	Cma_Chr04 : 446317 .. 451183 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACCCACTGCGTTGTTTTGCAGTATAGTACTACAGTTTCTGAACTGGGTGTTGCTCTTTCTATCAAAATTCTGCTTTCTTTTTACCTAAACGTTCTTTCCCATTATTGAGATGGATTGTTGATCTGTTCTTGCTTTGGTAAGCTAATCCTCTTTCTTTTTGTTTTCTTCATCTGGGTTCTTTCTGATCCTTGTTTTCTTCTATTTTTCTCCCTCTCCGTACTGTCTCTGTGATTGTACTATGCAGCTACATCTTGTCCCTTCGCTGATTCTTACTGTTTCTGGGTTGTTTATGATCTATGGCTGTTCCTTGTCTTCCATGTTTAGCTATCGTTTTGTGGGCGATCTTCTTTTTGTGTTTGATTTCTGAAGAAACAGAGTTTTGATTTTATGCGTTCAAGCAGAACATGCGAGGAAAATGGCAATGATAAGACCCATTTCTTTTCAAAGCTTTGTGGGAGGCAATATCTTTGAGAAACTCTTCTTAGTTTCATGAGTTAAGGCTTTCTTTTGATAGAATCCTGATACTTTTTTACATTTATTCTCGGTTTTTCTTCATATCATAGAACTTTTGAGGATTGATATAGAGCTTAAAATCTCACATGAGCATTATTTAGTGCTTGGCCCTGCATAAACTACCATTATTATGCATTCATGCTCCTCCCCAAATGAGTATGCATTACAATCAATTTGTTTGGGATTACAGGAAAAGGTTTGCTGTTGATCTACTTGGATTGAATGGGTAAAACAATTCAGCTTTATGGATTCCCTTCTGGTGTATTACAAGAATCGGTTAAGGCGTTTGTAGAGAGATTTACAGGCGAAGGAAGTATAGATGCCATAAATGTAAAACGTTCAAGGGGAAGAGGAAAGCGATTGTATGCAATCATCCAGTTTATTGACGATGTAGGTGCTAAGTTAATTATATCTTTGGCTAATGCAAGCCTCCGCTATGGAACTTCTTCTTTGAAGGCAAGGGAGTGGAAACAGGATATTCTACAAGATCCACTAGTCTTTGAATACAATTTCAAAGGCTTAGAACTCCATCTTGGTTGTCAGATATCAAGGGAGGAATTTTTTGTGTTATGGACAGAGTCAAATGTGTCTGTGAATTTCGAGTTTGAGCGGCGTGATCTTAAGTTTTTCATATCCCATCCTCTTGTTGACTACATGCTCGTATTGCGATATGAGAACATTTGGCAAGTTGAGCTACACAAGCCACCAGGCCAATCTATAGATTATCTTCTGATTCAGGTTTGAACAATGTTTTCTTTTCTCTTCACTATTGGTAAATATTATGCATTCATACGATCACATTTGACCGAAAATTTTCACTCAACTGATGCCTATACTATTCTTGATTAGAGGGGTAAGATCTTACATCGGTTGGAAAGAGAAACAAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAATAGACGCGTTTTAAAATTGTGAAGCTGATAGCAATACATAACGGGCTAAAAGTGGACAATATCTGATAGCGATGGGTTTGGGCTATTACAAATAGTATCAAAGCCAGACATCGGACATTGGGCTCTGAGGGGGTGGATTGTATGATCTCACACCGGTTGGAGAGGGGAACGAAGCATTTCTTATAAGGGTGTGAGAACCTTTCCCTAGTAGACGCGTTTTAAAACTATGTGGCTAACGGTAAACGTAATAGGCTAAAGTAGAAAATATCTGCTAGCAGTGGATTTTAGCTGTTACATGGCAAGAGCAATAATTGAACTGAGCTGAAGTTAGAGTAATGCTTAGCTTTATTAAGTTTTTGGGACCTTTGGTCCTCGCCTGCATTCACGTCATATAGGTGCTGTCCGGACATGCTTTCTTTACCCATTTTCATTTCATTTTGCATACTACTCTAACTATGACCTCTCTGTATTGGTAGTTAGTTGGTGCTCCACGGATTTATGAGAGAGATACAAAGCTTTTTGGACATATTTCTGAAGACCCCTTCTTGAGCTTTTCTAAGGAAATGGACACCGAATGGTTTCGAGCAACCGATTTCACTCCATCATGCTGTATTGGACAATCTGGAGCTTTATGCTTGGAGATTCCTTACGGTCGCCAGCTCCCTAATTTTCATGATAAATTTGCTTACTTCAAAGAAATAAAGGGTAAATTTACACTGGCCACCGGTTCTACTTATTCGTCCAATGTAAACTTGGTACCTGTAGTTAGACCTCCTCTGAGCATCCACTTGCCATATGCCATTTTGTTTAAGATAAACTTGTTGGTACAACAGGGGTGTCTTCCAGGCCCAGCTCTTGATATCAGTTTCTATGAGATGGTTGATCCTCAGATACACAATATTGCCTTCATAGATCGTGCTTTAAGGAAACTTTATGACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGGTGAGGAGTACAGGAAGTACTCCAAGTTAACGAATCCGCCGCAGCCACCTAACTTGTCCTTAGATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTGACACCTTGTAGAGTGTACTTTTGTGGTCCAGAGGTTAATGTTTCAAACCGTGTATTGCGTCGTTATCCCGAATATCTTGACAACTTTTTGCGTGTTTCGTTTGTCGACGAGGAATTGGATAGACTGTATTCAACTGAATTGTCTCCACGAGAATCTTCTTCCTTGGGGGATGGAAAGACGAAAATATTTAAAAGAATCCTTTCAGTTCTGAAAGATGGCATTACCATTGGTGATAAGAAGTTCGAGTTTCTTGCGTATTCTTCGAGTCAATTACGGGAAAATGCTGTGTGGATGTTTGCTCCAAGAGATGGGATTACTGCAGCTAAAATAAGGAAATGGATGGGAGATTTTCATAGTATAAGAAATGTAGCCAAGTATGCTGCTAGACTAGGCCAATCCTTTGGTTCATCCACAGAAACTGCAAGTGTCAGTCGACGCGAAGTTGAGGTTATTCCTGATATCGAGGTCGAATCAGATGCTGGTATCAATTATGTCTTCTCTGATGGGATTGGGAAAATATCAGCTAGTTTTGCTAGAGAAGTGGCTAGAAAATGCCGCATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCGGTTGATCCAACCTCATTCGTAAAATTATCGCTCAGGAACAGCATGCTTAAGTATGAGTCGACCGACATGAAGCTCGATGTCTTATCTTGGAGTAGATATCATCCTTGTTATCTTAATCGTCAGTTGATTACTCTTTTGTCGACACTTGGAGTTCAGGATGATATCTTTGAGAGTAAACAAAAGGAATTGATAGATCAATTGGACACCATTTTTATGAATCCATTGAAGGCTCAGCAGGCCCTTGAGCTAATGTCTCCAGGAGAGAATACCAACATTCTGAAGGAAATAATCTCGTGCGGTTACCGACCTGATTCCGAACCTTTCTTATATATGATGTTGCATACGTTCCGTGAATCGAAGTTGTTAGAATTGCGGAGAAAGTCGAGGATCTTTATCCCAAATGGAAGAGCAATGATGGGATGTCTTGATGAAACTGGAAACTTAGAATATGGAGAGGTATTTGTGCAGTGTTCTGCTCACCAGCAGCTGCATAATGATCATATTATCTTTAAAAGAAGCAAATCAAATCAACATTTCATCGTAACGGGAACGGTAGTTGTGGCGAAGAACCCGTGCTTGCACCCAGGTGACGTGCGTGTCTTAACCGCTGTGGATGTACCAGCTCTACATCACATGGTAGATTGTCTGGTTTTTCCACAGAAGGGACCAAGGTAAATGATCTAGTTTTACATCTAATCTTGTTTATAGTGGCTAAGAACCATCTAATCTTGTTTATGCTTAAACTCATGTCTGCTAGTAATTCTGCTGATATTGGAAACTTTCTTTTCTGTACAAGACCTCATCCGAATGAATGTTCGGGAAGCGATCTCGATGGTGATATATACTTCGTGTGCTGGGATCCTGATTTGATTCCACATCAACAAGTCGAACCAATGGATTATACCCCCGTGCTTAGCAGATTACTAGATCATGATGTCACAATGGAGGAAGTTCAAGAGTATTTTGCAAATTATATGGTCAATGACAGTCTAGGAATCATTGCCAATGCTCATACAGCATTTGCAGATAGTTGGCCAGAGAAAGCAATGAGCGAGCCTTGTATAAAGCTTGCAAAACTATTCTCAATTGCAGTGGACTTCCCCAAAACTGGCGTTCCTGCTTTGATATCTGCTGATCTAAGAGTACAAGTATATCCTGATTTCATGGACAAACCCGACAAACAGCGCTACAAGTCACATAATGTACTGGGGAAGCTGTTCAGAATGTTGGATGACATTGAACCAAGGATTAGCATCAAGTCCGTGAAGTTTACTCGGGAGATAGCTCGGCAAGCTTATGACCCCGACATGGAAGTCGAAGGCTTCGAGGAGTACCTCGACGATGCGCTTTATCACAAGAACAATTACGACATGAGGTTGGGGAATTTGATGAAATATTATAAGATCAAAACTGAGGCAGAGCTAATCAGTGGGGTTAGTTTGACAAAATCATCTTCTTTTACGAAGAAAAATGAAGCGGAATCTATCATCATGGCTGTGAAGTCCCTGCGAAAGGAGGCGAGGGGGTGGTTCAATGAGAATGCTGGCTTGCATTTTGGACATGACAATAATGCGTATGCTAGAGCTTCAGCATGGTATTTTGTTACATATCATTACAGCTACTGGGGCTGGTTTGGGGAGAAGAATGAAAGCCATTTTCTCAGCTTTCCATGGTGTGTTTACGACAAGCTCATCCGTATCAAGAAGCGCAAGATTGGTCCTCGAGCTCGCCATCGGTAA

mRNA sequence

TCACCCACTGCGTTGTTTTGCAGTATAGTACTACAGTTTCTGAACTGGGTGTTGCTCTTTCTATCAAAATTCTGCTTTCTTTTTACCTAAACGTTCTTTCCCATTATTGAGATGGATTGTTGATCTGTTCTTGCTTTGGAAAAGGTTTGCTGTTGATCTACTTGGATTGAATGGGTAAAACAATTCAGCTTTATGGATTCCCTTCTGGTGTATTACAAGAATCGGTTAAGGCGTTTGTAGAGAGATTTACAGGCGAAGGAAGTATAGATGCCATAAATGTAAAACGTTCAAGGGGAAGAGGAAAGCGATTGTATGCAATCATCCAGTTTATTGACGATGTAGGTGCTAAGTTAATTATATCTTTGGCTAATGCAAGCCTCCGCTATGGAACTTCTTCTTTGAAGGCAAGGGAGTGGAAACAGGATATTCTACAAGATCCACTAGTCTTTGAATACAATTTCAAAGGCTTAGAACTCCATCTTGGTTGTCAGATATCAAGGGAGGAATTTTTTGTGTTATGGACAGAGTCAAATGTGTCTGTGAATTTCGAGTTTGAGCGGCGTGATCTTAAGTTTTTCATATCCCATCCTCTTGTTGACTACATGCTCGTATTGCGATATGAGAACATTTGGCAAGTTGAGCTACACAAGCCACCAGGCCAATCTATAGATTATCTTCTGATTCAGTTAGTTGGTGCTCCACGGATTTATGAGAGAGATACAAAGCTTTTTGGACATATTTCTGAAGACCCCTTCTTGAGCTTTTCTAAGGAAATGGACACCGAATGGTTTCGAGCAACCGATTTCACTCCATCATGCTGTATTGGACAATCTGGAGCTTTATGCTTGGAGATTCCTTACGGTCGCCAGCTCCCTAATTTTCATGATAAATTTGCTTACTTCAAAGAAATAAAGGGTAAATTTACACTGGCCACCGGTTCTACTTATTCGTCCAATGTAAACTTGGTACCTGTAGTTAGACCTCCTCTGAGCATCCACTTGCCATATGCCATTTTGTTTAAGATAAACTTGTTGGTACAACAGGGGTGTCTTCCAGGCCCAGCTCTTGATATCAGTTTCTATGAGATGGTTGATCCTCAGATACACAATATTGCCTTCATAGATCGTGCTTTAAGGAAACTTTATGACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGGTGAGGAGTACAGGAAGTACTCCAAGTTAACGAATCCGCCGCAGCCACCTAACTTGTCCTTAGATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTGACACCTTGTAGAGTGTACTTTTGTGGTCCAGAGGTTAATGTTTCAAACCGTGTATTGCGTCGTTATCCCGAATATCTTGACAACTTTTTGCGTGTTTCGTTTGTCGACGAGGAATTGGATAGACTGTATTCAACTGAATTGTCTCCACGAGAATCTTCTTCCTTGGGGGATGGAAAGACGAAAATATTTAAAAGAATCCTTTCAGTTCTGAAAGATGGCATTACCATTGGTGATAAGAAGTTCGAGTTTCTTGCGTATTCTTCGAGTCAATTACGGGAAAATGCTGTGTGGATGTTTGCTCCAAGAGATGGGATTACTGCAGCTAAAATAAGGAAATGGATGGGAGATTTTCATAGTATAAGAAATGTAGCCAAGTATGCTGCTAGACTAGGCCAATCCTTTGGTTCATCCACAGAAACTGCAAGTGTCAGTCGACGCGAAGTTGAGGTTATTCCTGATATCGAGGTCGAATCAGATGCTGGTATCAATTATGTCTTCTCTGATGGGATTGGGAAAATATCAGCTAGTTTTGCTAGAGAAGTGGCTAGAAAATGCCGCATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCGGTTGATCCAACCTCATTCGTAAAATTATCGCTCAGGAACAGCATGCTTAAGTATGAGTCGACCGACATGAAGCTCGATGTCTTATCTTGGAGTAGATATCATCCTTGTTATCTTAATCGTCAGTTGATTACTCTTTTGTCGACACTTGGAGTTCAGGATGATATCTTTGAGAGTAAACAAAAGGAATTGATAGATCAATTGGACACCATTTTTATGAATCCATTGAAGGCTCAGCAGGCCCTTGAGCTAATGTCTCCAGGAGAGAATACCAACATTCTGAAGGAAATAATCTCGTGCGGTTACCGACCTGATTCCGAACCTTTCTTATATATGATGTTGCATACGTTCCGTGAATCGAAGTTGTTAGAATTGCGGAGAAAGTCGAGGATCTTTATCCCAAATGGAAGAGCAATGATGGGATGTCTTGATGAAACTGGAAACTTAGAATATGGAGAGGTATTTGTGCAGTGTTCTGCTCACCAGCAGCTGCATAATGATCATATTATCTTTAAAAGAAGCAAATCAAATCAACATTTCATCGTAACGGGAACGGTAGTTGTGGCGAAGAACCCGTGCTTGCACCCAGGTGACGTGCGTGTCTTAACCGCTGTGGATGTACCAGCTCTACATCACATGGTAGATTGTCTGGTTTTTCCACAGAAGGGACCAAGTAATTCTGCTGATATTGGAAACTTTCTTTTCTGTACAAGACCTCATCCGAATGAATGTTCGGGAAGCGATCTCGATGGTGATATATACTTCGTGTGCTGGGATCCTGATTTGATTCCACATCAACAAGTCGAACCAATGGATTATACCCCCGTGCTTAGCAGATTACTAGATCATGATGTCACAATGGAGGAAGTTCAAGAGTATTTTGCAAATTATATGGTCAATGACAGTCTAGGAATCATTGCCAATGCTCATACAGCATTTGCAGATAGTTGGCCAGAGAAAGCAATGAGCGAGCCTTGTATAAAGCTTGCAAAACTATTCTCAATTGCAGTGGACTTCCCCAAAACTGGCGTTCCTGCTTTGATATCTGCTGATCTAAGAGTACAAGTATATCCTGATTTCATGGACAAACCCGACAAACAGCGCTACAAGTCACATAATGTACTGGGGAAGCTGTTCAGAATGTTGGATGACATTGAACCAAGGATTAGCATCAAGTCCGTGAAGTTTACTCGGGAGATAGCTCGGCAAGCTTATGACCCCGACATGGAAGTCGAAGGCTTCGAGGAGTACCTCGACGATGCGCTTTATCACAAGAACAATTACGACATGAGGTTGGGGAATTTGATGAAATATTATAAGATCAAAACTGAGGCAGAGCTAATCAGTGGGGTTAGTTTGACAAAATCATCTTCTTTTACGAAGAAAAATGAAGCGGAATCTATCATCATGGCTGTGAAGTCCCTGCGAAAGGAGGCGAGGGGGTGGTTCAATGAGAATGCTGGCTTGCATTTTGGACATGACAATAATGCGTATGCTAGAGCTTCAGCATGGTATTTTGTTACATATCATTACAGCTACTGGGGCTGGTTTGGGGAGAAGAATGAAAGCCATTTTCTCAGCTTTCCATGGTGTGTTTACGACAAGCTCATCCGTATCAAGAAGCGCAAGATTGGTCCTCGAGCTCGCCATCGGTAA

Coding sequence (CDS)

ATGGGTAAAACAATTCAGCTTTATGGATTCCCTTCTGGTGTATTACAAGAATCGGTTAAGGCGTTTGTAGAGAGATTTACAGGCGAAGGAAGTATAGATGCCATAAATGTAAAACGTTCAAGGGGAAGAGGAAAGCGATTGTATGCAATCATCCAGTTTATTGACGATGTAGGTGCTAAGTTAATTATATCTTTGGCTAATGCAAGCCTCCGCTATGGAACTTCTTCTTTGAAGGCAAGGGAGTGGAAACAGGATATTCTACAAGATCCACTAGTCTTTGAATACAATTTCAAAGGCTTAGAACTCCATCTTGGTTGTCAGATATCAAGGGAGGAATTTTTTGTGTTATGGACAGAGTCAAATGTGTCTGTGAATTTCGAGTTTGAGCGGCGTGATCTTAAGTTTTTCATATCCCATCCTCTTGTTGACTACATGCTCGTATTGCGATATGAGAACATTTGGCAAGTTGAGCTACACAAGCCACCAGGCCAATCTATAGATTATCTTCTGATTCAGTTAGTTGGTGCTCCACGGATTTATGAGAGAGATACAAAGCTTTTTGGACATATTTCTGAAGACCCCTTCTTGAGCTTTTCTAAGGAAATGGACACCGAATGGTTTCGAGCAACCGATTTCACTCCATCATGCTGTATTGGACAATCTGGAGCTTTATGCTTGGAGATTCCTTACGGTCGCCAGCTCCCTAATTTTCATGATAAATTTGCTTACTTCAAAGAAATAAAGGGTAAATTTACACTGGCCACCGGTTCTACTTATTCGTCCAATGTAAACTTGGTACCTGTAGTTAGACCTCCTCTGAGCATCCACTTGCCATATGCCATTTTGTTTAAGATAAACTTGTTGGTACAACAGGGGTGTCTTCCAGGCCCAGCTCTTGATATCAGTTTCTATGAGATGGTTGATCCTCAGATACACAATATTGCCTTCATAGATCGTGCTTTAAGGAAACTTTATGACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGGTGAGGAGTACAGGAAGTACTCCAAGTTAACGAATCCGCCGCAGCCACCTAACTTGTCCTTAGATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTGACACCTTGTAGAGTGTACTTTTGTGGTCCAGAGGTTAATGTTTCAAACCGTGTATTGCGTCGTTATCCCGAATATCTTGACAACTTTTTGCGTGTTTCGTTTGTCGACGAGGAATTGGATAGACTGTATTCAACTGAATTGTCTCCACGAGAATCTTCTTCCTTGGGGGATGGAAAGACGAAAATATTTAAAAGAATCCTTTCAGTTCTGAAAGATGGCATTACCATTGGTGATAAGAAGTTCGAGTTTCTTGCGTATTCTTCGAGTCAATTACGGGAAAATGCTGTGTGGATGTTTGCTCCAAGAGATGGGATTACTGCAGCTAAAATAAGGAAATGGATGGGAGATTTTCATAGTATAAGAAATGTAGCCAAGTATGCTGCTAGACTAGGCCAATCCTTTGGTTCATCCACAGAAACTGCAAGTGTCAGTCGACGCGAAGTTGAGGTTATTCCTGATATCGAGGTCGAATCAGATGCTGGTATCAATTATGTCTTCTCTGATGGGATTGGGAAAATATCAGCTAGTTTTGCTAGAGAAGTGGCTAGAAAATGCCGCATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCGGTTGATCCAACCTCATTCGTAAAATTATCGCTCAGGAACAGCATGCTTAAGTATGAGTCGACCGACATGAAGCTCGATGTCTTATCTTGGAGTAGATATCATCCTTGTTATCTTAATCGTCAGTTGATTACTCTTTTGTCGACACTTGGAGTTCAGGATGATATCTTTGAGAGTAAACAAAAGGAATTGATAGATCAATTGGACACCATTTTTATGAATCCATTGAAGGCTCAGCAGGCCCTTGAGCTAATGTCTCCAGGAGAGAATACCAACATTCTGAAGGAAATAATCTCGTGCGGTTACCGACCTGATTCCGAACCTTTCTTATATATGATGTTGCATACGTTCCGTGAATCGAAGTTGTTAGAATTGCGGAGAAAGTCGAGGATCTTTATCCCAAATGGAAGAGCAATGATGGGATGTCTTGATGAAACTGGAAACTTAGAATATGGAGAGGTATTTGTGCAGTGTTCTGCTCACCAGCAGCTGCATAATGATCATATTATCTTTAAAAGAAGCAAATCAAATCAACATTTCATCGTAACGGGAACGGTAGTTGTGGCGAAGAACCCGTGCTTGCACCCAGGTGACGTGCGTGTCTTAACCGCTGTGGATGTACCAGCTCTACATCACATGGTAGATTGTCTGGTTTTTCCACAGAAGGGACCAAGTAATTCTGCTGATATTGGAAACTTTCTTTTCTGTACAAGACCTCATCCGAATGAATGTTCGGGAAGCGATCTCGATGGTGATATATACTTCGTGTGCTGGGATCCTGATTTGATTCCACATCAACAAGTCGAACCAATGGATTATACCCCCGTGCTTAGCAGATTACTAGATCATGATGTCACAATGGAGGAAGTTCAAGAGTATTTTGCAAATTATATGGTCAATGACAGTCTAGGAATCATTGCCAATGCTCATACAGCATTTGCAGATAGTTGGCCAGAGAAAGCAATGAGCGAGCCTTGTATAAAGCTTGCAAAACTATTCTCAATTGCAGTGGACTTCCCCAAAACTGGCGTTCCTGCTTTGATATCTGCTGATCTAAGAGTACAAGTATATCCTGATTTCATGGACAAACCCGACAAACAGCGCTACAAGTCACATAATGTACTGGGGAAGCTGTTCAGAATGTTGGATGACATTGAACCAAGGATTAGCATCAAGTCCGTGAAGTTTACTCGGGAGATAGCTCGGCAAGCTTATGACCCCGACATGGAAGTCGAAGGCTTCGAGGAGTACCTCGACGATGCGCTTTATCACAAGAACAATTACGACATGAGGTTGGGGAATTTGATGAAATATTATAAGATCAAAACTGAGGCAGAGCTAATCAGTGGGGTTAGTTTGACAAAATCATCTTCTTTTACGAAGAAAAATGAAGCGGAATCTATCATCATGGCTGTGAAGTCCCTGCGAAAGGAGGCGAGGGGGTGGTTCAATGAGAATGCTGGCTTGCATTTTGGACATGACAATAATGCGTATGCTAGAGCTTCAGCATGGTATTTTGTTACATATCATTACAGCTACTGGGGCTGGTTTGGGGAGAAGAATGAAAGCCATTTTCTCAGCTTTCCATGGTGTGTTTACGACAAGCTCATCCGTATCAAGAAGCGCAAGATTGGTCCTCGAGCTCGCCATCGGTAA

Protein sequence

MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAKLIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTESNVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIYERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDKFAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSPRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGWFGEKNESHFLSFPWCVYDKLIRIKKRKIGPRARHR

Homology

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BLAST of CmaCh04G000900 vs. Swiss-Prot
Match: RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1303.9 bits (3373), Expect = 0.0e+00
Identity = 667/1134 (58.82%), Postives = 824/1134 (72.66%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQ++GFP+GV  E VK F+ER TG G++ AI V++ +  G R+YAI+QF  +   +
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
            LII+ A   L YG S LKA E +QDI+  P    +   GL++  GCQ+S ++F  LW+  
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            +V V+F    R L F  S    DY L L YENIWQ++LH P G+S  +L+IQ++GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ERDTK----LFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPN 240
            E++ +    LFG +       +S   D +W R TDFT S CIGQS A CLE+P    +P+
Sbjct: 181  EKEDQPINLLFGIMD-----FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 240

Query: 241  FHDKFAYFKEIKGK-FTLATGSTYSSNVN-LVPVVRPPLSIHLPYAILFKINLLVQQGCL 300
            F + FA + E +   F + +GS+YSSN N LVPVV PP    LP+ ILFK+N LVQ  CL
Sbjct: 241  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 300

Query: 301  PGPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQP 360
             GPALD+ FY +++ + ++ A ID  L KL+ L ECCY P+ WL +EY+K+      P  
Sbjct: 301  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 360

Query: 361  PNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLY 420
            P +SLD+GLVY++RVQVTP RVYF GPEVNVSNRVLR Y +Y++NFLRVSFVDE+L+++ 
Sbjct: 361  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 420

Query: 421  STELSPRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRD 480
            S +LSPR S+     +TK++ RI SVL+DGI IGDKKFEFLA+SSSQLREN+ WMFAP D
Sbjct: 421  SMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 480

Query: 481  GITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGIN 540
             ITAA IR WMGDF  IRNVAKYAARLGQSF SS ET +V   E+EVIPD+E+ S  G  
Sbjct: 481  RITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS-LGTR 540

Query: 541  YVFSDGIGKISASFAREVARKCRIRH-TPSAFQIRYAGFKGVISVDPTSFVKLSLRNSML 600
            YVFSDGIGKISA FAR+VARKC +   +PSAFQIRY G+KGV++VDP S  KLSLR SM 
Sbjct: 541  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 600

Query: 601  KYESTDMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLK 660
            K+ES + KLDVL+WS+Y PCY+NRQLITLLSTLGV D +FE KQ+E++D+LD I  +PL+
Sbjct: 601  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 660

Query: 661  AQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGR 720
            A +AL LM+PGENTNILK +I CGY+PD+EPFL MML  FR SKLLELR K+RIFI  GR
Sbjct: 661  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 720

Query: 721  AMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPG 780
            +MMGCLDET  LEYG+V VQ S               +  + FI+TG VVVAKNPCLHPG
Sbjct: 721  SMMGCLDETRTLEYGQVVVQYS------------DPMRPGRRFIITGPVVVAKNPCLHPG 780

Query: 781  DVRVLTAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVC 840
            DVRVL AV+VPAL+HMVDC+VFPQKG              RPHPNECSGSDLDGDIYFVC
Sbjct: 781  DVRVLQAVNVPALNHMVDCVVFPQKG-------------LRPHPNECSGSDLDGDIYFVC 840

Query: 841  WDPDLIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSW 900
            WD +L+P +  EPMDYTP  +++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFAD  
Sbjct: 841  WDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKE 900

Query: 901  PEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGK 960
            P KA S+PCI+LAK FS AVDFPKTGV A+I   L V+ YPDFM+KPDK  Y+S NV+GK
Sbjct: 901  PLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGK 960

Query: 961  LFRMLDD-IEPRISIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLM 1020
            LFR + +   P ISIKS  FT ++A ++YD DMEV+GFEEY+D+A Y K NYD +LGNLM
Sbjct: 961  LFREVKERAPPLISIKS--FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLM 1020

Query: 1021 KYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNN 1080
             YY IKTEAE++SG  +  S SFTK+ +AESI  AV++LRKE    FN +       + N
Sbjct: 1021 DYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASE-----EEEN 1080

Query: 1081 AYARASAWYFVTYHYSYWGWFGE-KNESHFLSFPWCVYDKLIRIKKRKIGPRAR 1126
              A+ASAWY VTYH SYWG + E  N  HFLSF WCVYDKL+RIKK  +G R R
Sbjct: 1081 ESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQR 1093

[Close]

BLAST of CmaCh04G000900 vs. Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 878.6 bits (2269), Expect = 7.1e-254
Identity = 445/747 (59.57%), Postives = 564/747 (75.50%), Query Frame = 1


Query: 376  VYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSPRESSSLGDGKTKIFK 435
            VYF GPE+NVSNRV+R +   ++NFLR+SFVDE+ ++L +T+LSPR +S     +T ++K
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 436  RILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAKIRKWMGDFHSIRNVA 495
            R+LSVL DGITIG K FEFLA+SSSQLR+N+ WMFA R G+ A+ IR WMGDF +IRNVA
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 496  KYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDGIGKISASFAREVARK 555
            KYAARLGQSF SSTET  V + EVE I DI+     G  +VFSDGIGKIS++FA EVA K
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDIK----NGTQHVFSDGIGKISSAFANEVAMK 188

Query: 556  CRI-RHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDMKLDVLSWSRYHPCY 615
            C + R  PSAFQIRY G+KGV++VDPTS  KLSLR SMLK++S ++ +DVL++S+Y P +
Sbjct: 189  CNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGF 248

Query: 616  LNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALELMSPGENTNILKEII 675
            LNRQLITLLSTLGV+D +FE KQ+E ++QL+ +  +P  A +A+ELM  GE TN +KE++
Sbjct: 249  LNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELL 308

Query: 676  SCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQC 735
             CGY+PD EP+L M+L TFR SKLLEL+ KSRI IP GRAMMGCLDET  L+YG+VF++ 
Sbjct: 309  LCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRA 368

Query: 736  SAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPALHHMVDCLV 795
            ++     ND         N  F VTG VV+AKNPCLHPGD+R+L AVDVP LHHM +C+V
Sbjct: 369  TSGV---ND---------NDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 428

Query: 796  FPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIPHQQVEPMDYTPVLS 855
            FPQ+GP             RPHPNECSGSDLDGDIYFV WDP LIP + V PMDYTP  +
Sbjct: 429  FPQQGP-------------RPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPT 488

Query: 856  RLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSEPCIKLAKLFSIAVD 915
              LDHDVT+EEV+EYF NY+VN+SLG+IANAH  FAD    KA S PCI+LAKLFSIAVD
Sbjct: 489  ETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVD 548

Query: 916  FPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDDIEPRISIKSVKFTR 975
            FPKTGVPALI  +L V+ YPDFM+K DK  Y+S  V+GKL+R +    P I      FTR
Sbjct: 549  FPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIK----HFTR 608

Query: 976  EIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSSS 1035
            E+AR++YD DM V+G+E+Y+ +A+  K+ YD +LGNLM +Y IK+EAE+ISG  L  + +
Sbjct: 609  EVARRSYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKN 668

Query: 1036 FTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNA-YARASAWYFVTYHYSYWGWF 1095
            FTKK++A++I +AV+SLRKEAR  F+E +    GH ++A  A+ASAWY VTYH  +WG +
Sbjct: 669  FTKKSDADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCY 722

Query: 1096 GEKNE-SHFLSFPWCVYDKLIRIKKRK 1120
             E  E  HF+SFPWC+Y+KL+RIK+R+
Sbjct: 729  NEGYERPHFISFPWCIYEKLLRIKQRR 722

[Close]

BLAST of CmaCh04G000900 vs. Swiss-Prot
Match: RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)

HSP 1 Score: 724.5 bits (1869), Expect = 1.7e-207
Identity = 419/1138 (36.82%), Postives = 650/1138 (57.12%), Query Frame = 1


Query: 4    TIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGK-RLYAIIQFID-DVGAKL 63
            T+++   P  ++ + +  F+E   GE ++ A+ +  +R   K R +A +QF   +V ++ 
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   IISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREE-FFVLWTES 123
             +  + + L + T +L+  E   DI+  P+        + L +G   S E+ F  L    
Sbjct: 71   QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 124  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQS--IDYLLIQLVGAPR 183
             V      E+R ++F++      Y + +R+E+I +       G +  ID  L++L   P+
Sbjct: 131  GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190

Query: 184  IYERDT-KLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNF 243
            +++R T  +      D +    ++ D  W R TDF+ S  IG S   CLE+  G  + + 
Sbjct: 191  VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250

Query: 244  HDKFAYFKEIKGKFTLATGSTYSSNVNLVPVVRPP-LSIHLPYAILFKINLLVQ-QGCLP 303
                 Y++E     T   G T++S   +VP++    L +  PY ILF++N LV  Q    
Sbjct: 251  FSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISL 310

Query: 304  GPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLT--NPPQ 363
              A D+   +++       A +   L+KL+     CY+P  ++  + +   K    +P  
Sbjct: 311  FAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPAS 370

Query: 364  PPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRL 423
                  ++ ++   R  VTP ++Y  GPE+  +N V++ + E++ +F+RV+FV+E+  +L
Sbjct: 371  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 430

Query: 424  YSTELS--PRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFA 483
             +  LS   +E   +   +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR N+VWMFA
Sbjct: 431  PANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 490

Query: 484  PRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDA 543
              + + A  IR+WMG F  IR+++K AAR+GQ F +S +T  V  ++VE IPDIEV +D 
Sbjct: 491  SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTD- 550

Query: 544  GINYVFSDGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNS 603
            G +Y FSDGIGKIS +FA++VA+KC + H PSAFQIRY G+KGVI+VD +SF KLSLR+S
Sbjct: 551  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 610

Query: 604  MLKYESTDMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNP 663
            MLK++S +  L+V  W+   PC+LNR++I LLSTLG++D +FE+ Q   +  L  +  + 
Sbjct: 611  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 670

Query: 664  LKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPN 723
              A   L+ +S   + N+L +++  GY P SEP+L MML    ES+L EL+ + RI +P 
Sbjct: 671  DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 730

Query: 724  GRAMMGCLDETGNLEYGEVFVQCS-AHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCL 783
            GR ++GC+DE G LEYG+V+V+ +    +L +    + R    +  +V G VVV KNPCL
Sbjct: 731  GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 790

Query: 784  HPGDVRVLTAVDVPALHH--MVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGD 843
            HPGD+RVL A+          +DC++FPQKG              RPHPNECSG DLDGD
Sbjct: 791  HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKG-------------ERPHPNECSGGDLDGD 850

Query: 844  IYFVCWDPDLIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTA 903
             +FV WD  +IP +   PMDY     RL+DHDVT+EE+ ++F +YM++D+LG+I+ AH  
Sbjct: 851  QFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLV 910

Query: 904  FADSWPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSH 963
             AD  PEKA S+ C++LA L S AVDF KTG PA +   L+ + +PDF+++ +K  Y S 
Sbjct: 911  HADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISE 970

Query: 964  NVLGKLFRMLDDIEPRISIKSVKFTREIARQ-----AYDPDMEVEGFEEYLDDALYHKNN 1023
            +V GKL+R         ++KS    R+   +     AYD  +E  GFE +++ A  H++ 
Sbjct: 971  SVFGKLYR---------AVKSSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDM 1030

Query: 1024 YDMRLGNLMKYYKIKTEAELISGVSLTKSSSFTKKNE-----AESIIMAVKSLRKEARGW 1083
            Y  +L +LM YY    E E+++G+  TK     + N       + I ++VK L KEA GW
Sbjct: 1031 YGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGW 1090

Query: 1084 FNENAGLHFGHDNNAYARASAWYFVTYHYSYWGWFGEKNESHFLSFPWCVYDKLIRIK 1117
            F ++       +      ASAWY+VTY+ ++        +  FLSFPW V D L+ IK
Sbjct: 1091 FEKSC----EDEQQKKKLASAWYYVTYNPNH-----RDEKLTFLSFPWIVGDVLLDIK 1114

[Close]

BLAST of CmaCh04G000900 vs. Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 689.1 bits (1777), Expect = 8.0e-197
Identity = 414/1129 (36.67%), Postives = 622/1129 (55.09%), Query Frame = 1


Query: 11   PSGVLQESVKAFVERFTGEGSIDAINVKRS-RGRGKRLYAIIQFIDDVGAKLIISLANAS 70
            PS V  E +  F       G   A  +  + RG   R +  +QF     A     LA++ 
Sbjct: 19   PSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAGLASSG 78

Query: 71   L--RYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTESNVSVNFE 130
               R+  + L       D+L           G  L +G +++   F        V     
Sbjct: 79   RLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGVRAEVI 138

Query: 131  FERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSID---YLLIQLVGAPRIYERDT 190
              +R +  ++ H    Y L + +E     ++    G ++D    +L+QL  APRI+   +
Sbjct: 139  PGKRRVDLYLEHDSQRYKLEVLFE-----DMKDCLGCTLDGMGAILLQLNYAPRIHTAIS 198

Query: 191  --KLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDKFA 250
               +     +D F +  ++    W RA DFTP+   G+   L L++     + +      
Sbjct: 199  GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLP 258

Query: 251  YFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALDIS 310
            +   + G+ T+ +     ++ N+VP+V  P    +PY +LF++N L+  G +    ++  
Sbjct: 259  FSGNL-GELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNAD 318

Query: 311  FYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYS-KLTNPPQPPNLSLDE 370
             ++ +     +++   R   K++ L+  CY P +++ +E   YS K ++     N    E
Sbjct: 319  LFKALQELPVDVS--RRIFEKMHKLESTCYGPLQFIQQE--AYSMKRSHNVLLSNEGEGE 378

Query: 371  G---LVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTEL 430
            G   L+  +RV +TP +++  GPE  V+N V++ +  Y  +F+RV+FVDE+  +L S  +
Sbjct: 379  GERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAI 438

Query: 431  SPRESSSLGDG--KTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGI 490
            S R          KT ++ RILS+LK G +IG K FEFLA+S+SQLR N+VWMFA    +
Sbjct: 439  SARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASL 498

Query: 491  TAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYV 550
             A  IR+WMG F +IR+V+K AAR+GQ F SS +T  V R +VEVIPDIE+ +D G  Y+
Sbjct: 499  NAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTD-GSKYI 558

Query: 551  FSDGIGKISASFAREVARKCRIRHT--PSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLK 610
            FSDGIGKIS  FA+ VA    +  T  PSAFQIRY G+KGVI++DP S + LSLR SM K
Sbjct: 559  FSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKK 618

Query: 611  YESTDMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKA 670
            +ES    L++ SWS+  PCY+NR++I+LLSTLG++D+IF + Q++ + + + +  N   A
Sbjct: 619  FESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVA 678

Query: 671  QQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRA 730
               L  +   E    +K ++  GY P SEP+L M+L   +E++L ++R + +I +P GR 
Sbjct: 679  LSVLGKLGGSETKTAVKMLLQ-GYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRV 738

Query: 731  MMGCLDETGNLEYGEVFVQCSAHQQLHND-HIIFKRSKSNQHFIVTGTVVVAKNPCLHPG 790
            ++GCLDETG LEYG+V+++ + + +   D +  +  +   +   V G V + KNPCLHPG
Sbjct: 739  LIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPG 798

Query: 791  DVRVLTAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVC 850
            D+RVL A+  P L  MVDCLVFPQ+G              RPHPNECSG DLDGD+YF+ 
Sbjct: 799  DIRVLEAIYDPDLVGMVDCLVFPQRG-------------ERPHPNECSGGDLDGDLYFIT 858

Query: 851  WDPDLIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSW 910
            WD  LIP +   PMDYT    R++DH VT+EE+Q++F +YM+NDSLG I+ AH   AD  
Sbjct: 859  WDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRS 918

Query: 911  PEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGK 970
            P KA S  C++LA L S+AVDF KTG PA +   LR + YPDFM++ +K  Y S+ VLGK
Sbjct: 919  PLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGK 978

Query: 971  LFR-MLDDIEPRISIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLM 1030
            L+R  +  +E      ++  +       YDPD+EV G +E+L  A  +   Y+ +L  LM
Sbjct: 979  LYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLM 1038

Query: 1031 KYYKIKTEAELISGVSLTKSSSFTKKNE-----AESIIMAVKSLRKEARGWFNENAGLHF 1090
             YY+ + E E+++G    K     + N+      + I+ AV +L +EARGW      L  
Sbjct: 1039 NYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWL-----LSS 1098

Query: 1091 GHDNNAYARASAWYFVTYHYSYWGWFGEKNESHFLSFPWCVYDKLIRIK 1117
              + +A   ASAWY VTYH         +    F SFPW   D L+ IK
Sbjct: 1099 RKEEDASRMASAWYRVTYHPD------RRRGKRFWSFPWIACDNLLAIK 1111

[Close]

BLAST of CmaCh04G000900 vs. Swiss-Prot
Match: RDR6_ARATH (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 5.4e-161
Identity = 389/1089 (35.72%), Postives = 571/1089 (52.43%), Query Frame = 1


Query: 95   YNFKGLELHLGCQISREEFFVLWTESNV---------SVNFEFERR---DLKFFISHPLV 154
            Y   G+ L +G  +SR++FFV W    V         +  F F +      K  + H ++
Sbjct: 130  YKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVI 189

Query: 155  --DYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIYER--DTKLFGHISEDPFLSF 214
              DY L L   +I  V  +K     +  L++QL  +PR++ R  D  ++  +  D     
Sbjct: 190  NCDYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVWYRTADDDIYDTVPGDLL--- 249

Query: 215  SKEMDTEWFRATDFTPSCCIGQ--SGALCLEIPYGRQLPNFHDKFAYFKEIKGKFTLATG 274
              + D  W R TDFT    IG+  S  + +   Y  +L    D F   +  + +      
Sbjct: 250  --DDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVR---- 309

Query: 275  STYSSNVNLVPVVRPPLSIH---------LPYAILFKINLLVQQGCLPGPALDISFYEMV 334
              +   +   P    P+S H         + + I+F +N ++ +G      L   F++++
Sbjct: 310  --WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLL 369

Query: 335  --DPQIHNIAFIDRAL---RKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLDEG 394
               P+  NIA +       R ++D     Y   K + E  +K  KL    +       E 
Sbjct: 370  RNQPKDVNIASLKHLCTYKRPVFD----AYKRLKLVQEWIQKNPKLLGSHEQ-----SED 429

Query: 395  LVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELS--- 454
            +  + R+ +TP R Y   PEV +SNRVLRRY    + FLRV+F+DE +  + S  LS   
Sbjct: 430  ISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFV 489

Query: 455  ----PRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDG 514
                   +SS    KT +FKR+ S+L DG  +  +K+ FLA+S++QLR+ + W FA    
Sbjct: 490  APIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGK 549

Query: 515  ITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEV-IPDIEVESDAGIN 574
               + I+ WMG F   +NVAK AAR+G  F S+  T  V   EV+  +PDIE        
Sbjct: 550  TRVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----- 609

Query: 575  YVFSDGIGKISASFAREVARKCR--IRHTPSAFQIRYAGFKGVISVDPTSF--VKLSLRN 634
            YVFSDGIG I+   A EV  K +  + ++P A+QIRYAGFKGV++  P+    ++L+LR+
Sbjct: 610  YVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRD 669

Query: 635  SMLKYESTDMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMN 694
            SM K+ S    L++ SW+R+ P +LNRQ+ITLLS LGV D+IF   Q+ ++ +L+ I  +
Sbjct: 670  SMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDD 729

Query: 695  PLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIP 754
               A + L   S  E  N    ++S G++P +EP L  ML + R ++L  LR KSRIF+ 
Sbjct: 730  TDVAFEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVT 789

Query: 755  NGRAMMGCLDETGNLEYGEVFVQCS--AHQQLHNDH-IIFKRSKSNQHFIVTGTVVVAKN 814
            +GR +MGCLDE G LE+G+ F+Q S  + +   + H   FK +K++   +V G V +AKN
Sbjct: 790  SGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLE-VVKGYVAIAKN 849

Query: 815  PCLHPGDVRVLTAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDG 874
            PCLHPGDVR+L AVDVP LHHM DCL+FPQKG              RPH NE SGSDLDG
Sbjct: 850  PCLHPGDVRILEAVDVPQLHHMYDCLIFPQKG-------------DRPHTNEASGSDLDG 909

Query: 875  DIYFVCWDPDLIP--HQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANA 934
            D+YFV WD  LIP   +    M Y     + L   V  +++ ++FA  + N+ LG I NA
Sbjct: 910  DLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNA 969

Query: 935  HTAFADSWPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRY 994
            H   AD     AM E C+ LA+L + AVDFPKTG    +   L+ ++YPDFM K D Q Y
Sbjct: 970  HVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTY 1029

Query: 995  KSHNVLGKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYD 1054
            KS+ +LG+L+R + ++    +  S + + + +   YD  +E+ GFE+ + +A  HK  YD
Sbjct: 1030 KSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYD 1089

Query: 1055 MRLGNLMKYYKIKTEAELISG--VSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNE-- 1114
             +L  L+  YK++ E E+++G   S+ K +S  +    E +  +  SL+KE R  F E  
Sbjct: 1090 GQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETI 1149

Query: 1115 --NAGLHFGHDNNAY-ARASAWYFVTYHYSYWGWF---------GEKNESHFLSFPWCVY 1119
              +  L     N  Y  +ASAWY VTYH     W           E + +  LSF W   
Sbjct: 1150 PDHENLSEEEKNILYEKKASAWYHVTYHPE---WVKKSLELQDPDESSHAAMLSFAWIAA 1172

[Close]

BLAST of CmaCh04G000900 vs. TrEMBL
Match: E9NWK7_CUCSA (RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=Csa_5G239640 PE=2 SV=1)

HSP 1 Score: 1903.3 bits (4929), Expect = 0.0e+00
Identity = 933/1128 (82.71%), Postives = 1010/1128 (89.54%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
             IIS A   L YGTS LKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+P VDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL +GSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL ++YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSL DGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREV+VIPDIEVES +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDM 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTD 
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF +PLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIP 840
            VDVP+LHHM+DC+VFPQKG             +RPHPNECSGSDLDGDIYFVCWDPDLIP
Sbjct: 781  VDVPSLHHMIDCVVFPQKG-------------SRPHPNECSGSDLDGDIYFVCWDPDLIP 840

Query: 841  HQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSE 900
             QQVEPMDYTPV S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS 
Sbjct: 841  PQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSN 900

Query: 901  PCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDD 960
            PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK  Y+S NVLGKLFRMLD 
Sbjct: 901  PCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDS 960

Query: 961  IEPRI-SIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKT 1020
            I P I +I+S  +T E+ARQ YDPDMEVEGFEEYLDDA+YHKNNYDMRLGNLM Y+KIKT
Sbjct: 961  IGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKT 1020

Query: 1021 EAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASA 1080
            EAELISG SLT S SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASA
Sbjct: 1021 EAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASA 1080

Query: 1081 WYFVTYHYSYWGWF-GEKNESHFLSFPWCVYDKLIRIKKRKIGPRARH 1127
            WYFVTYH++YWGW  G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 WYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of CmaCh04G000900 vs. TrEMBL
Match: H3K3Y9_CUCSA (RNA-dependent RNA polymerase 1 OS=Cucumis sativus GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1890.9 bits (4897), Expect = 0.0e+00
Identity = 928/1128 (82.27%), Postives = 1006/1128 (89.18%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
             IIS A   L YGTS LKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F F+ R L FFIS+P VDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEI YGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL +GSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL ++YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSL DGKTKI KRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQ FGSSTET SVSRREV+VIPDIEVES +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDM 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTD 
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF +PLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVF QCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIP 840
            VDVP+LHHM+DC+VFPQKG             +RPHPNECSGSDLDGDIYFVCWDPDLIP
Sbjct: 781  VDVPSLHHMIDCVVFPQKG-------------SRPHPNECSGSDLDGDIYFVCWDPDLIP 840

Query: 841  HQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSE 900
             QQVEPMDYTPV S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS 
Sbjct: 841  PQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSN 900

Query: 901  PCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDD 960
            PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK  Y+S NVLGKLFRMLD 
Sbjct: 901  PCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDS 960

Query: 961  IEPRI-SIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKT 1020
            I P I +I+S  +T E+ARQ YDPDMEVEGFEEYLDDA+YHKNNYDMRLGNLM Y+KIKT
Sbjct: 961  IGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKT 1020

Query: 1021 EAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASA 1080
            EAELISG SLT S SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASA
Sbjct: 1021 EAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASA 1080

Query: 1081 WYFVTYHYSYWGWF-GEKNESHFLSFPWCVYDKLIRIKKRKIGPRARH 1127
            WYFVTYH++YWGW  G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 WYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of CmaCh04G000900 vs. TrEMBL
Match: A0A0S1YCZ7_CUCSA (RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=RDR1b PE=2 SV=1)

HSP 1 Score: 1889.8 bits (4894), Expect = 0.0e+00
Identity = 929/1128 (82.36%), Postives = 1006/1128 (89.18%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
             IIS A   L YGTS LKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+P VDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL +GSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPS WL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSIWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRR P+Y+DNFLRVSFVDEEL ++YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRCPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSL DGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREV+VIPDIEVES +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDM 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTD 
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLIT LSTLGVQD +FESKQ+ELID+LDTIF +PLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITFLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIP 840
            VDVP+LHHM+DC+VFPQKG             +RPHPNECSGSDLDGDIYFVCWDPDLIP
Sbjct: 781  VDVPSLHHMIDCVVFPQKG-------------SRPHPNECSGSDLDGDIYFVCWDPDLIP 840

Query: 841  HQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSE 900
             QQVEPMDYTPV S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS 
Sbjct: 841  PQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSN 900

Query: 901  PCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDD 960
            PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK  Y+S NVLGKLFRMLD 
Sbjct: 901  PCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDS 960

Query: 961  IEPRI-SIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKT 1020
            I P I +I+S  +T E+ARQ YDPDMEVEGFEEYLDDA+YHKNNYDMRLGNLM Y+KIKT
Sbjct: 961  IGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKT 1020

Query: 1021 EAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASA 1080
            EAELISG SLT S SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASA
Sbjct: 1021 EAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASA 1080

Query: 1081 WYFVTYHYSYWGWF-GEKNESHFLSFPWCVYDKLIRIKKRKIGPRARH 1127
            WYFVTYH++YWGW  G KN  HFLSFP CVYDKLIRIK RKI  RAR+
Sbjct: 1081 WYFVTYHHTYWGWSDGRKNHGHFLSFPRCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of CmaCh04G000900 vs. TrEMBL
Match: B9HJH7_POPTR (RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s13550g PE=4 SV=1)

HSP 1 Score: 1412.1 bits (3654), Expect = 0.0e+00
Identity = 700/1124 (62.28%), Postives = 858/1124 (76.33%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            M KT+++ GFPS     +V+ F+E  TG G+++A+ ++  R  G R YAI+QF     A+
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
             IISLAN  L YG S L AR   +DI+  P  F +  + + LH G Q S+E+F  +W+ +
Sbjct: 61   QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSVNF    R L FF+SH L +Y L L +ENIWQ+ELH+P GQ++ YLLIQL GAPRIY
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHD 240
            ERD     ++ EDP L++ +++ D +W R TDFTPSC IG S +LCLE+P   QLPNF++
Sbjct: 181  ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240

Query: 241  KFAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPAL 300
             F Y+KE +G F L +G T+S N +LVP+V P   ++LPY ILF++NLLVQ GCL G  L
Sbjct: 241  NFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSML 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D  FY +VDP    +  I+ AL KLY LKECCY PSKW  E+Y+KY    NPP+ P LSL
Sbjct: 301  DDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELS 420
            D GLVYV++VQ+TPC+V+FCGPEVNVSNRVLR+Y E +DNFLRVSFVDEEL++++ST++S
Sbjct: 361  DAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVS 420

Query: 421  PRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
            PR SS     +T I+ RILS L++GI IGDKKFEFLA+SSSQLREN+ WMFA R G+TAA
Sbjct: 421  PRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSD 540
             IR WMG FH IRNVA+YAARLGQSFGSSTET SVS  E+E+IPDIEV S  G  Y+FSD
Sbjct: 481  DIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEV-SRGGTRYLFSD 540

Query: 541  GIGKISASFAREVARKCRIR-HTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKISA FAR+VA KC  +  TPSAFQIRYAG+KGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 600

Query: 601  DMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQAL 660
            + KLDVL+ S+Y PC+LNRQLITLLSTLGV D  FE KQ+E +DQLD +  +PL+AQ+AL
Sbjct: 601  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
            ELMSPGENTNILKE++ CGY+PD+EPFL MML TFR SKLLELR K+RIFIPNGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 720

Query: 721  LDETGNLEYGEVFVQCSA--HQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVR 780
            LDET  LE+G+VFV+ S    + L++   +F      Q +++ G+VVVAKNPCLHPGD+R
Sbjct: 721  LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 780

Query: 781  VLTAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDP 840
            +L AVDVPALHHMVDC+VFPQKGP             RPHPNECSGSDLDGDIYFVCWDP
Sbjct: 781  ILKAVDVPALHHMVDCVVFPQKGP-------------RPHPNECSGSDLDGDIYFVCWDP 840

Query: 841  DLIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEK 900
            +LIP QQ+ PMDYTP     LDHDVT+EEV+EYF NY+VNDSLG+IANAHTA AD    K
Sbjct: 841  ELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLK 900

Query: 901  AMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFR 960
            AMSEPC++LA+ FSIAVDFPKTGVPA I ++LR + YPDFM+KPDK  Y+S NV+GKLFR
Sbjct: 901  AMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFR 960

Query: 961  MLDDIEPRI-SIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYY 1020
             + DI PR  SI+S  FT ++ARQ YDPDMEV+GFE+Y+DDA Y+K+NYD +LGNLM+YY
Sbjct: 961  EVKDIAPRTSSIRS--FTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYY 1020

Query: 1021 KIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYA 1080
             IKTEAEL+SG  +  S SFTKK +AE+I MAV+SL+KEAR WFNE         ++  A
Sbjct: 1021 GIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDA 1080

Query: 1081 RASAWYFVTYHYSYWGWFGE-KNESHFLSFPWCVYDKLIRIKKR 1119
            +ASAWY VTYH++YWG + E  N  HFLSFPWCVYDKLI+IK+R
Sbjct: 1081 KASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRR 1108

[Close]

BLAST of CmaCh04G000900 vs. TrEMBL
Match: A0A061EGF4_THECC (RNA-dependent RNA polymerase 1 isoform 1 OS=Theobroma cacao GN=TCM_011292 PE=4 SV=1)

HSP 1 Score: 1405.6 bits (3637), Expect = 0.0e+00
Identity = 701/1122 (62.48%), Postives = 856/1122 (76.29%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQ+  FPS V  E VK F+E +TG+ ++ A+ +++ +  G R YAI+QF     A+
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG-RAYAIVQFTKSTDAE 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
            LII L N  L YG+S LKARE + DI+  P  F +  +G+ LH GCQ+S E+F+VLW E 
Sbjct: 61   LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEV 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            +V+VNF    R L+F +SH  V+Y L L YENIWQ+ELH+P  Q+  YLLIQL GAPRIY
Sbjct: 121  DVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHD 240
            E+D +  G + E+P L++  ++ D +W R TDFT S CIGQS  LCLE+PY  QLPNF +
Sbjct: 181  EKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRE 240

Query: 241  KFAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPAL 300
             FAY+KE +GKF L +GS+YS N+NLVP+V P L I LPY ILFKINLLVQ GC+PGPAL
Sbjct: 241  NFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPAL 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D +FY +V+P   +  +ID AL KLY LKECC+ PSKWL E+Y+ Y      P  P +SL
Sbjct: 301  DANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELS 420
            D+GLV V RVQ+TP RVYFCGPE+NVSNRVLR + + +DNFLR++FVDEEL++++ST+L 
Sbjct: 361  DDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLL 420

Query: 421  PRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
             R         T+I+ RILS LK+GI IGDK+FEFLA+SSSQLREN+ WMFA R+G+TAA
Sbjct: 421  TRNRI------TEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSD 540
             IR WMG+F  IRNVAKYAARLGQSF SSTET SV++ E+E+I D+E++ D GINYVFSD
Sbjct: 481  DIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRD-GINYVFSD 540

Query: 541  GIGKISASFAREVARKCRIR-HTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKISA FA++VA KCR+   TPSAFQIR  GFKGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESE 600

Query: 601  DMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQAL 660
            + KLDVL+WS+Y PC+LNRQLITLLSTLGV D  FE KQ+E++DQL+ I  +PLKAQ+AL
Sbjct: 601  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
            ELMSPGENTNILKE++ CGY PD+EPFL MML TFR SKLLELR KSRIF+ NGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGC 720

Query: 721  LDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVL 780
            LDET  L+YG+VFVQ S              S+S Q FIV G VVVAKNPCLHPGDVRVL
Sbjct: 721  LDETRTLDYGQVFVQVSG-------------SRSEQRFIVQGKVVVAKNPCLHPGDVRVL 780

Query: 781  TAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDL 840
            TAV+VP LHHMVDC+VFPQKG             +RPHPNECSGSDLDGDIYFVCWDP+L
Sbjct: 781  TAVNVPDLHHMVDCVVFPQKG-------------SRPHPNECSGSDLDGDIYFVCWDPEL 840

Query: 841  IPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAM 900
            IP +Q+ PMDY+P  ++ L+H+VT+EEV+EYF NY+VNDSLGIIANAHT FAD  P KAM
Sbjct: 841  IPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAM 900

Query: 901  SEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRML 960
            S  C  LAKLFSIAVDFPKTGVPA I  +LRV+ YPDFM+KPDK  Y+S+NV+GKLFR +
Sbjct: 901  SSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREV 960

Query: 961  DDIEP-RISIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKI 1020
             D+ P    I+S+  TRE   + YDPDMEV+G+E+Y+DDA YHK+NYD +LGNLM+YY I
Sbjct: 961  KDLAPNECFIRSL--TRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGI 1020

Query: 1021 KTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARA 1080
            KTEAE++SG  +  S SFTK+ +AE+I +AV+SLRKEAR WFNE         ++ YA+A
Sbjct: 1021 KTEAEILSGGIMKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKA 1080

Query: 1081 SAWYFVTYHYSYWGWFGE-KNESHFLSFPWCVYDKLIRIKKR 1119
            SAWY VTYH SYWG + E  N +HFLSFPWCVYDKLI IKK+
Sbjct: 1081 SAWYHVTYHPSYWGLYNEGMNRNHFLSFPWCVYDKLILIKKK 1086

[Close]

BLAST of CmaCh04G000900 vs. TAIR10
Match: AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)

HSP 1 Score: 1303.9 bits (3373), Expect = 0.0e+00
Identity = 667/1134 (58.82%), Postives = 824/1134 (72.66%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQ++GFP+GV  E VK F+ER TG G++ AI V++ +  G R+YAI+QF  +   +
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
            LII+ A   L YG S LKA E +QDI+  P    +   GL++  GCQ+S ++F  LW+  
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            +V V+F    R L F  S    DY L L YENIWQ++LH P G+S  +L+IQ++GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ERDTK----LFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPN 240
            E++ +    LFG +       +S   D +W R TDFT S CIGQS A CLE+P    +P+
Sbjct: 181  EKEDQPINLLFGIMD-----FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 240

Query: 241  FHDKFAYFKEIKGK-FTLATGSTYSSNVN-LVPVVRPPLSIHLPYAILFKINLLVQQGCL 300
            F + FA + E +   F + +GS+YSSN N LVPVV PP    LP+ ILFK+N LVQ  CL
Sbjct: 241  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 300

Query: 301  PGPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQP 360
             GPALD+ FY +++ + ++ A ID  L KL+ L ECCY P+ WL +EY+K+      P  
Sbjct: 301  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 360

Query: 361  PNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLY 420
            P +SLD+GLVY++RVQVTP RVYF GPEVNVSNRVLR Y +Y++NFLRVSFVDE+L+++ 
Sbjct: 361  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 420

Query: 421  STELSPRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRD 480
            S +LSPR S+     +TK++ RI SVL+DGI IGDKKFEFLA+SSSQLREN+ WMFAP D
Sbjct: 421  SMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 480

Query: 481  GITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGIN 540
             ITAA IR WMGDF  IRNVAKYAARLGQSF SS ET +V   E+EVIPD+E+ S  G  
Sbjct: 481  RITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS-LGTR 540

Query: 541  YVFSDGIGKISASFAREVARKCRIRH-TPSAFQIRYAGFKGVISVDPTSFVKLSLRNSML 600
            YVFSDGIGKISA FAR+VARKC +   +PSAFQIRY G+KGV++VDP S  KLSLR SM 
Sbjct: 541  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 600

Query: 601  KYESTDMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLK 660
            K+ES + KLDVL+WS+Y PCY+NRQLITLLSTLGV D +FE KQ+E++D+LD I  +PL+
Sbjct: 601  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 660

Query: 661  AQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGR 720
            A +AL LM+PGENTNILK +I CGY+PD+EPFL MML  FR SKLLELR K+RIFI  GR
Sbjct: 661  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 720

Query: 721  AMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPG 780
            +MMGCLDET  LEYG+V VQ S               +  + FI+TG VVVAKNPCLHPG
Sbjct: 721  SMMGCLDETRTLEYGQVVVQYS------------DPMRPGRRFIITGPVVVAKNPCLHPG 780

Query: 781  DVRVLTAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVC 840
            DVRVL AV+VPAL+HMVDC+VFPQKG              RPHPNECSGSDLDGDIYFVC
Sbjct: 781  DVRVLQAVNVPALNHMVDCVVFPQKG-------------LRPHPNECSGSDLDGDIYFVC 840

Query: 841  WDPDLIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSW 900
            WD +L+P +  EPMDYTP  +++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFAD  
Sbjct: 841  WDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKE 900

Query: 901  PEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGK 960
            P KA S+PCI+LAK FS AVDFPKTGV A+I   L V+ YPDFM+KPDK  Y+S NV+GK
Sbjct: 901  PLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGK 960

Query: 961  LFRMLDD-IEPRISIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLM 1020
            LFR + +   P ISIKS  FT ++A ++YD DMEV+GFEEY+D+A Y K NYD +LGNLM
Sbjct: 961  LFREVKERAPPLISIKS--FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLM 1020

Query: 1021 KYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNN 1080
             YY IKTEAE++SG  +  S SFTK+ +AESI  AV++LRKE    FN +       + N
Sbjct: 1021 DYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASE-----EEEN 1080

Query: 1081 AYARASAWYFVTYHYSYWGWFGE-KNESHFLSFPWCVYDKLIRIKKRKIGPRAR 1126
              A+ASAWY VTYH SYWG + E  N  HFLSF WCVYDKL+RIKK  +G R R
Sbjct: 1081 ESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQR 1093

[Close]

BLAST of CmaCh04G000900 vs. TAIR10
Match: AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)

HSP 1 Score: 724.5 bits (1869), Expect = 9.7e-209
Identity = 419/1138 (36.82%), Postives = 650/1138 (57.12%), Query Frame = 1


Query: 4    TIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGK-RLYAIIQFID-DVGAKL 63
            T+++   P  ++ + +  F+E   GE ++ A+ +  +R   K R +A +QF   +V ++ 
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   IISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREE-FFVLWTES 123
             +  + + L + T +L+  E   DI+  P+        + L +G   S E+ F  L    
Sbjct: 71   QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 124  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQS--IDYLLIQLVGAPR 183
             V      E+R ++F++      Y + +R+E+I +       G +  ID  L++L   P+
Sbjct: 131  GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190

Query: 184  IYERDT-KLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNF 243
            +++R T  +      D +    ++ D  W R TDF+ S  IG S   CLE+  G  + + 
Sbjct: 191  VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250

Query: 244  HDKFAYFKEIKGKFTLATGSTYSSNVNLVPVVRPP-LSIHLPYAILFKINLLVQ-QGCLP 303
                 Y++E     T   G T++S   +VP++    L +  PY ILF++N LV  Q    
Sbjct: 251  FSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISL 310

Query: 304  GPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLT--NPPQ 363
              A D+   +++       A +   L+KL+     CY+P  ++  + +   K    +P  
Sbjct: 311  FAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPAS 370

Query: 364  PPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRL 423
                  ++ ++   R  VTP ++Y  GPE+  +N V++ + E++ +F+RV+FV+E+  +L
Sbjct: 371  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 430

Query: 424  YSTELS--PRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFA 483
             +  LS   +E   +   +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR N+VWMFA
Sbjct: 431  PANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 490

Query: 484  PRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDA 543
              + + A  IR+WMG F  IR+++K AAR+GQ F +S +T  V  ++VE IPDIEV +D 
Sbjct: 491  SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTD- 550

Query: 544  GINYVFSDGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNS 603
            G +Y FSDGIGKIS +FA++VA+KC + H PSAFQIRY G+KGVI+VD +SF KLSLR+S
Sbjct: 551  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 610

Query: 604  MLKYESTDMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNP 663
            MLK++S +  L+V  W+   PC+LNR++I LLSTLG++D +FE+ Q   +  L  +  + 
Sbjct: 611  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 670

Query: 664  LKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPN 723
              A   L+ +S   + N+L +++  GY P SEP+L MML    ES+L EL+ + RI +P 
Sbjct: 671  DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 730

Query: 724  GRAMMGCLDETGNLEYGEVFVQCS-AHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCL 783
            GR ++GC+DE G LEYG+V+V+ +    +L +    + R    +  +V G VVV KNPCL
Sbjct: 731  GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 790

Query: 784  HPGDVRVLTAVDVPALHH--MVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGD 843
            HPGD+RVL A+          +DC++FPQKG              RPHPNECSG DLDGD
Sbjct: 791  HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKG-------------ERPHPNECSGGDLDGD 850

Query: 844  IYFVCWDPDLIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTA 903
             +FV WD  +IP +   PMDY     RL+DHDVT+EE+ ++F +YM++D+LG+I+ AH  
Sbjct: 851  QFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLV 910

Query: 904  FADSWPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSH 963
             AD  PEKA S+ C++LA L S AVDF KTG PA +   L+ + +PDF+++ +K  Y S 
Sbjct: 911  HADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISE 970

Query: 964  NVLGKLFRMLDDIEPRISIKSVKFTREIARQ-----AYDPDMEVEGFEEYLDDALYHKNN 1023
            +V GKL+R         ++KS    R+   +     AYD  +E  GFE +++ A  H++ 
Sbjct: 971  SVFGKLYR---------AVKSSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDM 1030

Query: 1024 YDMRLGNLMKYYKIKTEAELISGVSLTKSSSFTKKNE-----AESIIMAVKSLRKEARGW 1083
            Y  +L +LM YY    E E+++G+  TK     + N       + I ++VK L KEA GW
Sbjct: 1031 YGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGW 1090

Query: 1084 FNENAGLHFGHDNNAYARASAWYFVTYHYSYWGWFGEKNESHFLSFPWCVYDKLIRIK 1117
            F ++       +      ASAWY+VTY+ ++        +  FLSFPW V D L+ IK
Sbjct: 1091 FEKSC----EDEQQKKKLASAWYYVTYNPNH-----RDEKLTFLSFPWIVGDVLLDIK 1114

[Close]

BLAST of CmaCh04G000900 vs. TAIR10
Match: AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)

HSP 1 Score: 570.1 bits (1468), Expect = 3.1e-162
Identity = 389/1089 (35.72%), Postives = 571/1089 (52.43%), Query Frame = 1


Query: 95   YNFKGLELHLGCQISREEFFVLWTESNV---------SVNFEFERR---DLKFFISHPLV 154
            Y   G+ L +G  +SR++FFV W    V         +  F F +      K  + H ++
Sbjct: 130  YKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVI 189

Query: 155  --DYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIYER--DTKLFGHISEDPFLSF 214
              DY L L   +I  V  +K     +  L++QL  +PR++ R  D  ++  +  D     
Sbjct: 190  NCDYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVWYRTADDDIYDTVPGDLL--- 249

Query: 215  SKEMDTEWFRATDFTPSCCIGQ--SGALCLEIPYGRQLPNFHDKFAYFKEIKGKFTLATG 274
              + D  W R TDFT    IG+  S  + +   Y  +L    D F   +  + +      
Sbjct: 250  --DDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVR---- 309

Query: 275  STYSSNVNLVPVVRPPLSIH---------LPYAILFKINLLVQQGCLPGPALDISFYEMV 334
              +   +   P    P+S H         + + I+F +N ++ +G      L   F++++
Sbjct: 310  --WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLL 369

Query: 335  --DPQIHNIAFIDRAL---RKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLDEG 394
               P+  NIA +       R ++D     Y   K + E  +K  KL    +       E 
Sbjct: 370  RNQPKDVNIASLKHLCTYKRPVFD----AYKRLKLVQEWIQKNPKLLGSHEQ-----SED 429

Query: 395  LVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELS--- 454
            +  + R+ +TP R Y   PEV +SNRVLRRY    + FLRV+F+DE +  + S  LS   
Sbjct: 430  ISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFV 489

Query: 455  ----PRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDG 514
                   +SS    KT +FKR+ S+L DG  +  +K+ FLA+S++QLR+ + W FA    
Sbjct: 490  APIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGK 549

Query: 515  ITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEV-IPDIEVESDAGIN 574
               + I+ WMG F   +NVAK AAR+G  F S+  T  V   EV+  +PDIE        
Sbjct: 550  TRVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----- 609

Query: 575  YVFSDGIGKISASFAREVARKCR--IRHTPSAFQIRYAGFKGVISVDPTSF--VKLSLRN 634
            YVFSDGIG I+   A EV  K +  + ++P A+QIRYAGFKGV++  P+    ++L+LR+
Sbjct: 610  YVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRD 669

Query: 635  SMLKYESTDMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMN 694
            SM K+ S    L++ SW+R+ P +LNRQ+ITLLS LGV D+IF   Q+ ++ +L+ I  +
Sbjct: 670  SMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDD 729

Query: 695  PLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIP 754
               A + L   S  E  N    ++S G++P +EP L  ML + R ++L  LR KSRIF+ 
Sbjct: 730  TDVAFEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVT 789

Query: 755  NGRAMMGCLDETGNLEYGEVFVQCS--AHQQLHNDH-IIFKRSKSNQHFIVTGTVVVAKN 814
            +GR +MGCLDE G LE+G+ F+Q S  + +   + H   FK +K++   +V G V +AKN
Sbjct: 790  SGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLE-VVKGYVAIAKN 849

Query: 815  PCLHPGDVRVLTAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDG 874
            PCLHPGDVR+L AVDVP LHHM DCL+FPQKG              RPH NE SGSDLDG
Sbjct: 850  PCLHPGDVRILEAVDVPQLHHMYDCLIFPQKG-------------DRPHTNEASGSDLDG 909

Query: 875  DIYFVCWDPDLIP--HQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANA 934
            D+YFV WD  LIP   +    M Y     + L   V  +++ ++FA  + N+ LG I NA
Sbjct: 910  DLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNA 969

Query: 935  HTAFADSWPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRY 994
            H   AD     AM E C+ LA+L + AVDFPKTG    +   L+ ++YPDFM K D Q Y
Sbjct: 970  HVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTY 1029

Query: 995  KSHNVLGKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYD 1054
            KS+ +LG+L+R + ++    +  S + + + +   YD  +E+ GFE+ + +A  HK  YD
Sbjct: 1030 KSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYD 1089

Query: 1055 MRLGNLMKYYKIKTEAELISG--VSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNE-- 1114
             +L  L+  YK++ E E+++G   S+ K +S  +    E +  +  SL+KE R  F E  
Sbjct: 1090 GQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETI 1149

Query: 1115 --NAGLHFGHDNNAY-ARASAWYFVTYHYSYWGWF---------GEKNESHFLSFPWCVY 1119
              +  L     N  Y  +ASAWY VTYH     W           E + +  LSF W   
Sbjct: 1150 PDHENLSEEEKNILYEKKASAWYHVTYHPE---WVKKSLELQDPDESSHAAMLSFAWIAA 1172

[Close]

BLAST of CmaCh04G000900 vs. TAIR10
Match: AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-25
Identity = 182/728 (25.00%), Postives = 294/728 (40.38%), Query Frame = 1


Query: 321 LRKLYDLKECCYNPSKW--LGEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTPCRVY- 380
           +RK  DL    Y  + W  LG+ Y    +   P     L  D G+ + ++  V     Y 
Sbjct: 173 IRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRP-----LEGDSGMTHYYQCHVATDGSYK 232

Query: 381 FCGPEVNVSNRVLRRYPEYLDNFLRVSF-----VDEELDRLYSTELS-PRESSSLGDGKT 440
           F G  +  +   L +     DN L V F     V+   + LYST     +    +G  + 
Sbjct: 233 FKGHLLENTGTHLHKVLGD-DNVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRY 292

Query: 441 KIFKRILSVLKDG---------ITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAKIR 500
           + F     V KDG          T G K +     S++ +     ++FA   G +  + R
Sbjct: 293 RFF-----VFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFA---GKSMHEAR 352

Query: 501 KWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREV--EVIPDI--------EVESDAG 560
                 +++ ++  Y +R      S T+T  V    +  E I DI        +V    G
Sbjct: 353 MHFMHVNTLSSLPNYMSRFSLIL-SKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNG 412

Query: 561 INYVFSDGIGKISASFAREV------ARKCRIRHTPSA-------------------FQI 620
              + SDG G IS   AR         +  R  +  S                    F+I
Sbjct: 413 KPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRI 472

Query: 621 RYAGF--KGVISVDPTSFVK-LSLRNSMLK-YE-------STDMKLDVLSWSRY-HPCYL 680
            Y G+  KG    +     + + +R SM+K YE       ST   L+V++ S       L
Sbjct: 473 FYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARL 532

Query: 681 NRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALELMSPGENTNILKEIIS 740
           +R L+ LLS  GV +D F +  +  +++  TIF +   A +A       + T    ++I 
Sbjct: 533 SRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYT---ADMIL 592

Query: 741 CGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCS 800
            G  P  EP+L   L    +++   L+   R  I     +MG +D TG L+  E+ V   
Sbjct: 593 VGI-PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEICVILH 652

Query: 801 AHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPALHHMVD---- 860
           + Q                   ++G V+V +NP LH GD+ VL A  V AL   V     
Sbjct: 653 SGQ-------------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKF 712

Query: 861 CLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIPH-QQVEPMDYT 920
            + FPQKGP +  D             E +G D DGD+YF+  +P L+ H +  EP   +
Sbjct: 713 AVFFPQKGPRSLGD-------------EIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSS 772

Query: 921 PVLSRL--------LDHDVTMEEVQEYF--ANYMVNDSLGIIANAHTAFAD--------S 960
              S++        L  +   EE+ + F  A +   D +G+ A+      D        S
Sbjct: 773 SKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDES 832

[Close]

BLAST of CmaCh04G000900 vs. TAIR10
Match: AT2G19920.1 (AT2G19920.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-24
Identity = 180/735 (24.49%), Postives = 291/735 (39.59%), Query Frame = 1


Query: 321 LRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTP-----CR 380
           +R+  DL    Y  + W         KL    +   L  D G  + ++  V P      +
Sbjct: 178 IRQWKDLPMVAYERAVWF--------KLGQNEERMQLESDSGKTHYYQCHVAPDGSYRLK 237

Query: 381 VYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSPRESSSLGDGKTKIFK 440
            YF        ++VL       DN L V F     D+L      P+ES+   +  +K +K
Sbjct: 238 GYFLENTGTHLHKVLGD-----DNVLTVRF-----DQL------PKESTYCDNPYSK-YK 297

Query: 441 RILSVLKDGITIGDKKFEFLAYSSSQLRENA-------VWMFAPRDGITAA--------- 500
            I    K+GI +G ++++F  +      E         V  +  R G TA+         
Sbjct: 298 EIA---KNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPYIL 357

Query: 501 ------KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEV--IPDIEVESDA 560
                 + R      H++ + A Y AR      S T+   V   E+ V  I DI     +
Sbjct: 358 SGMSIHEARMHFMHVHTLPSPANYMARFSLIL-SKTKKLEVDMTEITVMQIDDIHCHDQS 417

Query: 561 --------GINYVFSDGIGKISASFAR---------------EVARKCRIRHTPSAFQ-- 620
                   G   + SDG G IS   AR                +   C ++  P   Q  
Sbjct: 418 NNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTC-VQEPPLLIQIR 477

Query: 621 --IRYAGFKGVISVD---PTSFVKLSLRNSMLKYE--------STDMKLDVLSWSRYHP- 680
                +  KG+  ++   P   V++  R SM+K          ST   L+V++ S     
Sbjct: 478 MFNDGSAVKGIFLLNKNLPPQTVQV--RPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKR 537

Query: 681 CYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALELMSPGENTNILKE 740
             L++ L+ LLS  GV +D F       +++  TIF     A +A       ++ N L +
Sbjct: 538 AKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-Q 597

Query: 741 IISCGYRPDSEPFLYMMLHTFRESKLLELRRKS----RIFIPNGRAMMGCLDETGNLEYG 800
           +I  G  P  EP+L   L     SKLL+L +      ++ I     +MG +D TG L+  
Sbjct: 598 MIMAGI-PLDEPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKED 657

Query: 801 EVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPALHH 860
           EV     +                         V+V +NP LH GD+ +L A  V +L  
Sbjct: 658 EVSGLAKSQD-----------------------VLVYRNPGLHFGDIHILKATYVKSLEQ 717

Query: 861 MVDC----LVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIPHQQV 920
            V      + FPQKGP +  D             E +G D DGD+YF+  +P L+ H + 
Sbjct: 718 YVGNSKYGVFFPQKGPRSLGD-------------EIAGGDFDGDMYFISRNPKLLEHYKP 777

Query: 921 -EPMDYTPVLSRL--------LDHDVTMEEVQEYF--ANYMVNDSLGIIANAHTAFADSW 960
            EP   +   S++        L  +   EE+ + F    +  +  +G  A++  A  D +
Sbjct: 778 SEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRF 835

[Close]

BLAST of CmaCh04G000900 vs. NCBI nr
Match: gi|525507284|ref|NP_001267682.1| (RNA-dependent RNA polymerase 1-like [Cucumis sativus])

HSP 1 Score: 1903.3 bits (4929), Expect = 0.0e+00
Identity = 933/1128 (82.71%), Postives = 1010/1128 (89.54%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
             IIS A   L YGTS LKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+P VDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL +GSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL ++YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSL DGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREV+VIPDIEVES +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDM 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTD 
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF +PLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIP 840
            VDVP+LHHM+DC+VFPQKG             +RPHPNECSGSDLDGDIYFVCWDPDLIP
Sbjct: 781  VDVPSLHHMIDCVVFPQKG-------------SRPHPNECSGSDLDGDIYFVCWDPDLIP 840

Query: 841  HQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSE 900
             QQVEPMDYTPV S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS 
Sbjct: 841  PQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSN 900

Query: 901  PCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDD 960
            PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK  Y+S NVLGKLFRMLD 
Sbjct: 901  PCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDS 960

Query: 961  IEPRI-SIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKT 1020
            I P I +I+S  +T E+ARQ YDPDMEVEGFEEYLDDA+YHKNNYDMRLGNLM Y+KIKT
Sbjct: 961  IGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKT 1020

Query: 1021 EAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASA 1080
            EAELISG SLT S SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASA
Sbjct: 1021 EAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASA 1080

Query: 1081 WYFVTYHYSYWGWF-GEKNESHFLSFPWCVYDKLIRIKKRKIGPRARH 1127
            WYFVTYH++YWGW  G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 WYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of CmaCh04G000900 vs. NCBI nr
Match: gi|377347180|dbj|BAL63010.1| (RNA-dependent RNA polymerase 1 [Cucumis sativus])

HSP 1 Score: 1890.9 bits (4897), Expect = 0.0e+00
Identity = 928/1128 (82.27%), Postives = 1006/1128 (89.18%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
             IIS A   L YGTS LKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F F+ R L FFIS+P VDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEI YGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL +GSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL ++YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSL DGKTKI KRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQ FGSSTET SVSRREV+VIPDIEVES +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDM 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTD 
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF +PLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVF QCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIP 840
            VDVP+LHHM+DC+VFPQKG             +RPHPNECSGSDLDGDIYFVCWDPDLIP
Sbjct: 781  VDVPSLHHMIDCVVFPQKG-------------SRPHPNECSGSDLDGDIYFVCWDPDLIP 840

Query: 841  HQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSE 900
             QQVEPMDYTPV S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS 
Sbjct: 841  PQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSN 900

Query: 901  PCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDD 960
            PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK  Y+S NVLGKLFRMLD 
Sbjct: 901  PCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDS 960

Query: 961  IEPRI-SIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKT 1020
            I P I +I+S  +T E+ARQ YDPDMEVEGFEEYLDDA+YHKNNYDMRLGNLM Y+KIKT
Sbjct: 961  IGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKT 1020

Query: 1021 EAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASA 1080
            EAELISG SLT S SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASA
Sbjct: 1021 EAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASA 1080

Query: 1081 WYFVTYHYSYWGWF-GEKNESHFLSFPWCVYDKLIRIKKRKIGPRARH 1127
            WYFVTYH++YWGW  G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 WYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of CmaCh04G000900 vs. NCBI nr
Match: gi|948561977|gb|ALM88234.1| (RNA-dependent RNA polymerase 1b [Cucumis sativus])

HSP 1 Score: 1889.8 bits (4894), Expect = 0.0e+00
Identity = 929/1128 (82.36%), Postives = 1006/1128 (89.18%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
             IIS A   L YGTS LKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+P VDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGRQLPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            FAYFKEIKGKFTL +GSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPS WL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSIWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRR P+Y+DNFLRVSFVDEEL ++YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRCPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSL DGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREV+VIPDIEVES +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDM 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTD 
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLIT LSTLGVQD +FESKQ+ELID+LDTIF +PLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITFLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIP 840
            VDVP+LHHM+DC+VFPQKG             +RPHPNECSGSDLDGDIYFVCWDPDLIP
Sbjct: 781  VDVPSLHHMIDCVVFPQKG-------------SRPHPNECSGSDLDGDIYFVCWDPDLIP 840

Query: 841  HQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSE 900
             QQVEPMDYTPV S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS 
Sbjct: 841  PQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSN 900

Query: 901  PCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDD 960
            PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK  Y+S NVLGKLFRMLD 
Sbjct: 901  PCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDS 960

Query: 961  IEPRI-SIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKT 1020
            I P I +I+S  +T E+ARQ YDPDMEVEGFEEYLDDA+YHKNNYDMRLGNLM Y+KIKT
Sbjct: 961  IGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKT 1020

Query: 1021 EAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASA 1080
            EAELISG SLT S SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASA
Sbjct: 1021 EAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASA 1080

Query: 1081 WYFVTYHYSYWGWF-GEKNESHFLSFPWCVYDKLIRIKKRKIGPRARH 1127
            WYFVTYH++YWGW  G KN  HFLSFP CVYDKLIRIK RKI  RAR+
Sbjct: 1081 WYFVTYHHTYWGWSDGRKNHGHFLSFPRCVYDKLIRIKHRKINCRARY 1115

[Close]

BLAST of CmaCh04G000900 vs. NCBI nr
Match: gi|1009154798|ref|XP_015895367.1| (PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba])

HSP 1 Score: 1449.1 bits (3750), Expect = 0.0e+00
Identity = 722/1131 (63.84%), Postives = 872/1131 (77.10%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MG+TIQ+ GFPS V  E VK F+E  TGEG++ AI +++ +  G R YAI+QF     A+
Sbjct: 1    MGRTIQVSGFPSSVSAELVKKFLENLTGEGTVYAIKLRKFK-NGGRYYAIVQFTSTRDAE 60

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
             IISLA A L YGTS L AR    DI+  P  + ++ + + LH GCQIS+E+F VLW   
Sbjct: 61   FIISLAGARLWYGTSYLTARSMDTDIVAKPRTYLHSLENITLHFGCQISKEKFSVLWKRE 120

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSV+F    R L F   +  V+Y L L YENIWQ+ELH+P GQ++ YLLIQL GAPRIY
Sbjct: 121  NVSVDFGIGLRRLHFHFMYQYVEYKLQLSYENIWQIELHRPLGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHD 240
            E+D    G + EDP  +F K+  D +W RATDFTPSC IGQS ALCLE+P G +LPNF +
Sbjct: 181  EKDVPSSGDVYEDPIFNFFKDTPDDQWVRATDFTPSCRIGQSSALCLELPSGPRLPNFKE 240

Query: 241  KFAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPAL 300
             FAY+KE +G+F+L TG  +S N+ LVP+V PPL +HLPY I+FKIN L+QQGCL GP+L
Sbjct: 241  NFAYYKESEGRFSLETGFPFSCNLYLVPIVGPPLDVHLPYDIIFKINALLQQGCLTGPSL 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D +FY +VDP+  N+A I+ AL KLY+LKECCY PS WL E+YRKY K   PP+ P +SL
Sbjct: 301  DAAFYRLVDPRRINVACIEHALDKLYNLKECCYEPSTWLNEQYRKYFKSKRPPKSPMISL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELS 420
            D GLVYV RVQ+TPC+VYF GPE+NVSNRVLR YP ++DNFLRVSFVDEELD++YST+LS
Sbjct: 361  DAGLVYVRRVQITPCKVYFFGPEINVSNRVLRHYPNHIDNFLRVSFVDEELDKMYSTDLS 420

Query: 421  PRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
            PR S++    KT ++KR+LSVL+DGI IG+KKFEFLA+SSSQLR+N+ WMFAP DGITAA
Sbjct: 421  PRNSAT----KTGLYKRVLSVLRDGIIIGNKKFEFLAFSSSQLRDNSTWMFAPSDGITAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSD 540
             IR+WMGDF  IRNVAKYAARLGQSFGSSTET SVSR EVE IPDIEV    G+ Y FSD
Sbjct: 481  DIREWMGDFRQIRNVAKYAARLGQSFGSSTETLSVSRHEVEKIPDIEVVY-GGVKYAFSD 540

Query: 541  GIGKISASFAREVARKCRIRH-TPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKIS+ FAR+VA KC     TPSAFQIRY G+KGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISSEFARKVASKCGCNGVTPSAFQIRYGGYKGVVAVDPTSSFKLSLRKSMCKYESD 600

Query: 601  DMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQAL 660
            ++KLDVL++S++ PC+LNRQLI+LLSTLGV+D +F  KQ + + QLD I  +PL+AQ+AL
Sbjct: 601  NIKLDVLAYSKFQPCFLNRQLISLLSTLGVEDQVFLKKQSKAVQQLDAILTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
            +LMSPGENTN+LKE++ CGY+PD+EP+L MML TFR SKLLELR KSRIFIP+GRAMMGC
Sbjct: 661  DLMSPGENTNVLKELLMCGYKPDTEPYLSMMLQTFRASKLLELRTKSRIFIPDGRAMMGC 720

Query: 721  LDETGNLEYGEVFVQCS-AHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRV 780
            LDET  LEYG+VFVQ S +  +   D  +   + + Q FIVTG+VVVAKNPCLHPGDVRV
Sbjct: 721  LDETRTLEYGQVFVQFSGSRYRQFGDSPMLGGNGTKQRFIVTGSVVVAKNPCLHPGDVRV 780

Query: 781  LTAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPD 840
            L AV+V  LHHMVDC+VFPQKG             +RPHPNECSGSDLDGDIYFVCWDP+
Sbjct: 781  LRAVNVSELHHMVDCVVFPQKG-------------SRPHPNECSGSDLDGDIYFVCWDPE 840

Query: 841  LIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKA 900
            LIP  Q+EPMDYTP  S L D DVT+EEVQEYFANY+VNDSLGIIANAHT FAD    KA
Sbjct: 841  LIPCHQIEPMDYTPAPSMLKDDDVTIEEVQEYFANYIVNDSLGIIANAHTVFADKEYGKA 900

Query: 901  MSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRM 960
            MS PC++LA+LFSIAVDFPKTG+PA+I   L V+ YPDFM+KPDKQ Y+S NV+GKLFR 
Sbjct: 901  MSSPCVELARLFSIAVDFPKTGIPAVIPPHLHVKEYPDFMEKPDKQTYESQNVIGKLFRE 960

Query: 961  LDDIEPRI-SIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYK 1020
            + DI P   SI+S  FT E+AR++YDPDMEV+GFE+YLDDA Y+KN+YD +LGNL+ YY 
Sbjct: 961  VKDIAPNTSSIRS--FTSEVARKSYDPDMEVDGFEDYLDDAYYYKNSYDYKLGNLLDYYG 1020

Query: 1021 IKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYAR 1080
            IKTEAE++SG  L  S SFTK+ +AESI MAV++LRKEAR WFNE         ++ YA+
Sbjct: 1021 IKTEAEILSGSILRMSKSFTKRRDAESINMAVRALRKEARNWFNEKRSGGDFESDDLYAK 1080

Query: 1081 ASAWYFVTYHYSYWGWFGE-KNESHFLSFPWCVYDKLIRIKKRKIGPRARH 1127
            ASAWY VTYH SYWG + E  N  H+LSF WCVYD+L+ IK+ K   R RH
Sbjct: 1081 ASAWYHVTYHPSYWGSYNEGMNRDHYLSFAWCVYDRLVEIKEDK-ASRRRH 1109

[Close]

BLAST of CmaCh04G000900 vs. NCBI nr
Match: gi|802596564|ref|XP_012072320.1| (PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas])

HSP 1 Score: 1423.7 bits (3684), Expect = 0.0e+00
Identity = 698/1124 (62.10%), Postives = 855/1124 (76.07%), Query Frame = 1


Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQ+YGFPS V  + VK F+E  +GEG++ A+ ++ ++ RG+R YAI+QF     A+
Sbjct: 18   MGKTIQVYGFPSHVTVDEVKKFLESHSGEGTVFAMKIRETKNRGRRKYAIVQFQTARDAE 77

Query: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
            LIISL N  LRYGTS LKAR    DI+  P  F ++   + LH GCQIS+E+F VLWT +
Sbjct: 78   LIISLTNKRLRYGTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKEKFSVLWTGT 137

Query: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180
            NVSVNF F  R L+FF+SH  + Y L L YEN+WQ+ELH P G+S+ YLLIQL GAPRI+
Sbjct: 138  NVSVNFGFGMRKLQFFLSHGQMGYKLELSYENVWQMELHCPRGRSVKYLLIQLYGAPRIF 197

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDK 240
            E++   F       F       D +W R  DFTP C IG S  LCLE P    +P F + 
Sbjct: 198  EKEIATFNVFEIPLFNDLKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVPKFQEN 257

Query: 241  FAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300
            F+Y+KE +G F L  G+ +S N++LVP+V PP  + LP+ ILF++NLLVQ GCLPG ALD
Sbjct: 258  FSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFRVNLLVQNGCLPGSALD 317

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
             SFYE+VDP   NI  I+ AL+KL+ LKECCY+PS+WL E+YRKY K    P+ P++SL 
Sbjct: 318  SSFYELVDPSTMNIDCIEHALKKLFHLKECCYDPSRWLDEQYRKYLKSKCHPRSPSISLG 377

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSP 420
             GLVY+ RVQ+TPC+VYFCGPEVNVSNRV+R Y + ++NFLRVSFVDEEL+++YST+L P
Sbjct: 378  SGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVSFVDEELEKIYSTDLCP 437

Query: 421  RESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SS  GD +T I+KRILS L++GI IG+K+FEFLA+SSSQLREN+ WMFA RDG+TAA 
Sbjct: 438  RASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASRDGLTAAD 497

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDG 540
            IR+WMG+F  IRNVAKYAARLGQSFGSSTET SVSR E+E++PD+EVE      Y+FSDG
Sbjct: 498  IREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVSRNEIEILPDVEVER-GRTKYLFSDG 557

Query: 541  IGKISASFAREVARKCRIR-HTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTD 600
            IGKISA FAR VA KC  +   PSAFQIRY G+KGV++VDPTS  KLSLR SM KYES +
Sbjct: 558  IGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMCKYESEN 617

Query: 601  MKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALE 660
             KLDVL +S+Y PC+LNRQ+ITLLSTLGV D IFE KQ+E +DQLD I  N L+AQ+AL+
Sbjct: 618  TKLDVLGYSKYQPCFLNRQMITLLSTLGVADHIFEKKQREAVDQLDAILTNSLRAQEALD 677

Query: 661  LMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCL 720
            LMSPGE TNIL E++ CGY+PD+EPFL MML  FR SKLL+LR KSRIF+PNGR+MMGCL
Sbjct: 678  LMSPGETTNILNEMLLCGYQPDAEPFLSMMLQMFRASKLLDLRTKSRIFVPNGRSMMGCL 737

Query: 721  DETGNLEYGEVFVQCSA--HQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRV 780
            DET NLEYG+VFVQ S   H+Q+++   +     S   F++ G V+VAKNPCLHPGD+RV
Sbjct: 738  DETRNLEYGQVFVQFSGSKHKQVYDSSTMVGGIGSGNGFVIEGMVIVAKNPCLHPGDIRV 797

Query: 781  LTAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPD 840
            L AV+VP LHHMVDC+VFPQKGP             RPHPNECSGSDLDGDIYFVCWDPD
Sbjct: 798  LRAVNVPDLHHMVDCVVFPQKGP-------------RPHPNECSGSDLDGDIYFVCWDPD 857

Query: 841  LIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKA 900
            LIP QQ+ PMDYTP  S  LDHDVT++EV EYF NY++NDSLGII+NAHT FAD  PEKA
Sbjct: 858  LIPRQQLPPMDYTPQPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPEKA 917

Query: 901  MSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRM 960
            MS+PC++LA  FSIAVDFPKTGVPA I + LRV+ YPDFM+KPDK  Y+S NV+GKLFR 
Sbjct: 918  MSKPCLELASKFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRA 977

Query: 961  LDDIEPRI-SIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYK 1020
            + DI P   SIKS  FT E+ARQ YDPDMEV+GFE+Y+DDA Y+K NYD +LGN M YY 
Sbjct: 978  VRDIAPHTSSIKS--FTLEVARQCYDPDMEVDGFEDYIDDAFYYKTNYDYKLGNHMDYYG 1037

Query: 1021 IKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYAR 1080
            I+TEAE++ G  +  S +FTKK +AE+I +AV+SLRKEAR WF E        +++ YA+
Sbjct: 1038 IRTEAEILGGSIMKMSKAFTKKRDAEAIGLAVRSLRKEARSWFKERGSGLDSEEDDVYAK 1097

Query: 1081 ASAWYFVTYHYSYWGWFGE-KNESHFLSFPWCVYDKLIRIKKRK 1120
            ASAW++VTYH SYWG + E  N  HFLSFPWCVYDKLI+IK+++
Sbjct: 1098 ASAWHYVTYHPSYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRKR 1125

The following BLAST results are available for this feature:

BLAST of CmaCh04G000900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDR1_ARATH	0.0e+00	58.82	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1	[more]
RDR1_ORYSJ	7.1e-254	59.57	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 ...	[more]
RDR2_ARATH	1.7e-207	36.82	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1	[more]
RDR2_ORYSJ	8.0e-197	36.67	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 ...	[more]
RDR6_ARATH	5.4e-161	35.72	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1	[more]

BLAST of CmaCh04G000900 vs. TrEMBL


Match Name	E-value	Identity	Description
E9NWK7_CUCSA	0.0e+00	82.71	RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=Csa_5G239640 PE=2 SV=1	[more]
H3K3Y9_CUCSA	0.0e+00	82.27	RNA-dependent RNA polymerase 1 OS=Cucumis sativus GN=RDR1 PE=2 SV=1	[more]
A0A0S1YCZ7_CUCSA	0.0e+00	82.36	RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=RDR1b PE=2 SV=1	[more]
B9HJH7_POPTR	0.0e+00	62.28	RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s...	[more]
A0A061EGF4_THECC	0.0e+00	62.48	RNA-dependent RNA polymerase 1 isoform 1 OS=Theobroma cacao GN=TCM_011292 PE=4 S...	[more]

BLAST of CmaCh04G000900 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14790.1	0.0e+00	58.82	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	9.7e-209	36.82	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	3.1e-162	35.72	RNA-dependent RNA polymerase 6	[more]
AT2G19910.1	1.6e-25	25.00	RNA-dependent RNA polymerase family protein	[more]
AT2G19920.1	1.7e-24	24.49	RNA-dependent RNA polymerase family protein	[more]

BLAST of CmaCh04G000900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525507284\|ref\|NP_001267682.1\|	0.0e+00	82.71	RNA-dependent RNA polymerase 1-like [Cucumis sativus]	[more]
gi\|377347180\|dbj\|BAL63010.1\|	0.0e+00	82.27	RNA-dependent RNA polymerase 1 [Cucumis sativus]	[more]
gi\|948561977\|gb\|ALM88234.1\|	0.0e+00	82.36	RNA-dependent RNA polymerase 1b [Cucumis sativus]	[more]
gi\|1009154798\|ref\|XP_015895367.1\|	0.0e+00	63.84	PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba]	[more]
gi\|802596564\|ref\|XP_012072320.1\|	0.0e+00	62.10	PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007855	RNA-dep_RNA_pol_euk-typ

Vocabulary: **Molecular Function**
Term	Definition
GO:0003968	RNA-directed RNA polymerase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0009615	response to virus
biological_process	GO:0009617	response to bacterium
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0060148	positive regulation of posttranscriptional gene silencing
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0010025	wax biosynthetic process
biological_process	GO:0001172	transcription, RNA-templated
biological_process	GO:0007165	signal transduction
biological_process	GO:0051707	response to other organism
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0048519	negative regulation of biological process
biological_process	GO:0045087	innate immune response
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0071310	cellular response to organic substance
cellular_component	GO:0031379	RNA-directed RNA polymerase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003968	RNA-directed RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G000900.1	CmaCh04G000900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 15..1127 score:
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 371..957 score: 2.6E
None	No IPR available	PANTHER	PTHR23079:SF9	RNA-DEPENDENT RNA POLYMERASE 1	coord: 15..1127 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G000900	Cucsa.143700	Cucumber (Gy14) v1	cgycmaB0401
CmaCh04G000900	Cla003960	Watermelon (97103) v1	cmawmB713
CmaCh04G000900	Cla002214	Watermelon (97103) v1	cmawmB684
CmaCh04G000900	Csa5G239140	Cucumber (Chinese Long) v2	cmacuB747
CmaCh04G000900	MELO3C005257	Melon (DHL92) v3.5.1	cmameB639
CmaCh04G000900	CSPI05G11790	Wild cucumber (PI 183967)	cmacpiB757
CmaCh04G000900	CmoCh04G000870	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G000900	Lsi04G009990	Bottle gourd (USVL1VR-Ls)	cmalsiB671
CmaCh04G000900	Cp4.1LG01g05940	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G000900	MELO3C026815.2	Melon (DHL92) v3.6.1	cmamedB743
CmaCh04G000900	CsaV3_5G011200	Cucumber (Chinese Long) v3	cmacucB0883
CmaCh04G000900	Bhi07G000388	Wax gourd	cmawgoB0890
CmaCh04G000900	Bhi12G000832	Wax gourd	cmawgoB0830
CmaCh04G000900	CsGy5G009050	Cucumber (Gy14) v2	cgybcmaB674

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G000900	Cucumber (Gy14) v2	cgybcmaB660
CmaCh04G000900	Silver-seed gourd	carcmaB0949
CmaCh04G000900	Cucumber (Chinese Long) v3	cmacucB0873
CmaCh04G000900	Cucumber (Chinese Long) v3	cmacucB0894
CmaCh04G000900	Watermelon (97103) v2	cmawmbB781
CmaCh04G000900	Cucurbita maxima (Rimu)	cmacmaB531
CmaCh04G000900	Cucumber (Gy14) v1	cgycmaB0493
CmaCh04G000900	Cucurbita moschata (Rifu)	cmacmoB730
CmaCh04G000900	Wild cucumber (PI 183967)	cmacpiB740
CmaCh04G000900	Watermelon (Charleston Gray)	cmawcgB674
CmaCh04G000900	Cucurbita pepo (Zucchini)	cmacpeB722