CmoCh04G000870 (gene) Cucurbita moschata (Rifu)

BLAST of CmoCh04G000870 vs. Swiss-Prot
Match: RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1325.1 bits (3428), Expect = 0.0e+00
Identity = 672/1121 (59.95%), Postives = 828/1121 (73.86%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQ++GFP+GV  E VK F+ER TG G++ AI V++ +  G R+YAI+QF  +   +
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
            LII+ A   L YG SYLKA E +QDI+  P    +   GL++  GCQ+S ++F  LW   
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            +V V+F    R L F  S  + DY L L YENIWQ++LH PQG+S  +L+IQ++GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ERDTK----LFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPN 240
            E++ +    LFG +       +S   D +W R TDFT S CIGQS A CLE+P    +P+
Sbjct: 181  EKEDQPINLLFGIMD-----FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 240

Query: 241  FHDKFAYFNEIKGK-FTLASGSTYSSNVN-LVPVVRPPLSIHLPYAILFKINLLVQQGCL 300
            F + FA + E +   F + SGS+YSSN N LVPVV PP    LP+ ILFK+N LVQ  CL
Sbjct: 241  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 300

Query: 301  PGPSLDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQP 360
             GP+LD+ FY +++ + ++ A ID  L KL+ L ECCY P+ WL +EY+K+      P  
Sbjct: 301  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 360

Query: 361  PNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLY 420
            P +SLD+GLVY++RVQVTP RVYF GPEVNVSNRVLR Y +Y++NFLRVSFVDE+L+K+ 
Sbjct: 361  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 420

Query: 421  STELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRD 480
            S +LSPR S+     +TK++ RI SVL+DGI IGDKKFEFLA+SSSQLREN+ WMFAP D
Sbjct: 421  SMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 480

Query: 481  GITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGIN 540
             ITAA IR WMGDF  IRNVAKYAARLGQSF SS ET +V   E++VIPD+E+ S  G  
Sbjct: 481  RITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS-LGTR 540

Query: 541  YVFSDGIGKISASFAREVARKCHI-RHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSML 600
            YVFSDGIGKISA FAR+VARKC +   +PSAFQIRY G+KGV++VDP S  KLSLR SM 
Sbjct: 541  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 600

Query: 601  KYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLK 660
            K+ES +TKLDVL+WS+Y PCY+NRQLITLLSTLGV D +FE KQ+E++D+LD I   PL+
Sbjct: 601  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 660

Query: 661  AQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGR 720
            A +AL LM+PGENTNILK +I CGY+PD+EPFL MML  FR SKLLELR K+RIFI  GR
Sbjct: 661  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 720

Query: 721  AMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPG 780
            +MMGCLDET  LEYG+V VQ S               +  + FI+TG VVVAKNPCLHPG
Sbjct: 721  SMMGCLDETRTLEYGQVVVQYS------------DPMRPGRRFIITGPVVVAKNPCLHPG 780

Query: 781  DVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEP 840
            DVRVL AV+VP+L+HMVDC+VFPQKG RPHPNECSGSDLDGDIYFVCWD +L+PP+  EP
Sbjct: 781  DVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEP 840

Query: 841  MDYTPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLA 900
            MDYTP P+++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFAD  P KA S+PCI+LA
Sbjct: 841  MDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELA 900

Query: 901  KLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDD-IEPRI 960
            K FS AVDFPKTGV A+I   L V+ YPDFM+KPDK +Y+S NV+GKLFR + +   P I
Sbjct: 901  KKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLI 960

Query: 961  SIKSVKFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELIS 1020
            SIKS  FT ++A ++YD DMEV GFEEY+D+A Y K NYD +LGNLM YY IKTEAE++S
Sbjct: 961  SIKS--FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILS 1020

Query: 1021 GVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTY 1080
            G  +  S SFTK+ +AESI  AV++LRKE    FN +       + N  A+ASAWY VTY
Sbjct: 1021 GGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASE-----EEENESAKASAWYHVTY 1080

Query: 1081 HYSYWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGARAR 1113
            H SYWG Y E  N  HFLSF WCVYDKL+RIKK  +G R R
Sbjct: 1081 HSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQR 1093

BLAST of CmoCh04G000870 vs. Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 897.9 bits (2319), Expect = 1.1e-259
Identity = 449/734 (61.17%), Postives = 567/734 (77.25%), Query Frame = 1

Query: 376  VYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFK 435
            VYF GPE+NVSNRV+R +   ++NFLR+SFVDE+ +KL +T+LSPR +S  +  +T ++K
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 436  RILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAKIRKWMGDFHSIRNVA 495
            R+LSVL DGITIG K FEFLA+SSSQLR+N+ WMFA R G+ A+ IR WMGDF +IRNVA
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 496  KYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSDGIGKISASFAREVARK 555
            KYAARLGQSF SSTET  V + EV+ I DI+     G  +VFSDGIGKIS++FA EVA K
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDIK----NGTQHVFSDGIGKISSAFANEVAMK 188

Query: 556  CHI-RHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDTKLDVLSWSRYHPCY 615
            C++ R  PSAFQIRY G+KGV++VDPTS  KLSLR SMLK++S +  +DVL++S+Y P +
Sbjct: 189  CNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGF 248

Query: 616  LNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALELMSPGENTNILKEII 675
            LNRQLITLLSTLGV+D +FE KQ+E ++QL+ +  DP  A +A+ELM  GE TN +KE++
Sbjct: 249  LNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELL 308

Query: 676  SCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQC 735
             CGY+PD EP+L M+L TFR SKLLEL+ KSRI IP GRAMMGCLDET  L+YG+VF++ 
Sbjct: 309  LCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRA 368

Query: 736  SAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCLV 795
            ++     ND         N  F VTG VV+AKNPCLHPGD+R+L AVDVP LHHM +C+V
Sbjct: 369  TSGV---ND---------NDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 428

Query: 796  FPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVPSRLLDHDVTMEEVQ 855
            FPQ+GPRPHPNECSGSDLDGDIYFV WDP LIPP+ V PMDYTP P+  LDHDVT+EEV+
Sbjct: 429  FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 488

Query: 856  EYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISAD 915
            EYF NY+VN+SLG+IANAH  FAD    KA S PCI+LAKLFSIAVDFPKTGVPALI  +
Sbjct: 489  EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 548

Query: 916  LRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEV 975
            L V+ YPDFM+K DK +Y+S  V+GKL+R +    P I      FTRE+AR++YD DM V
Sbjct: 549  LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIK----HFTREVARRSYDTDMIV 608

Query: 976  KGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMA 1035
             G+E+Y+ +A+  K+ YD +LGNLM +Y IK+EAE+ISG  L  + +FTKK++A++I +A
Sbjct: 609  DGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLA 668

Query: 1036 VKSLRKEARGWFNENAGLHFGHDNNA-YARASAWYFVTYHYSYWGWYGEKNE-SHFLSFP 1095
            V+SLRKEAR  F+E +    GH ++A  A+ASAWY VTYH  +WG Y E  E  HF+SFP
Sbjct: 669  VRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFP 722

Query: 1096 WCVYDKLIRIKKRK 1107
            WC+Y+KL+RIK+R+
Sbjct: 729  WCIYEKLLRIKQRR 722

BLAST of CmoCh04G000870 vs. Swiss-Prot
Match: RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)

HSP 1 Score: 736.9 bits (1901), Expect = 3.3e-211
Identity = 419/1125 (37.24%), Postives = 651/1125 (57.87%), Query Frame = 1

Query: 4    TIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGK-RLYAIIQFID-DVGAKL 63
            T+++   P  ++ + +  F+E   GE ++ A+ +  +R   K R +A +QF   +V ++ 
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   IISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREE-FFVLWRES 123
             +  + + L + T  L+  E   DI+  P+        + L +G   S E+ F  L +  
Sbjct: 71   QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 124  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQS--IDYLLIQLVGAPR 183
             V      E+R ++F++      Y + +R+E+I +       G +  ID  L++L   P+
Sbjct: 131  GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190

Query: 184  IYERDT-KLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNF 243
            +++R T  +      D +    ++ D  W R TDF+ S  IG S   CLE+  G  + + 
Sbjct: 191  VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250

Query: 244  HDKFAYFNEIKGKFTLASGSTYSSNVNLVPVVRPP-LSIHLPYAILFKINLLVQ-QGCLP 303
                 Y+ E     T   G T++S   +VP++    L +  PY ILF++N LV  Q    
Sbjct: 251  FSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISL 310

Query: 304  GPSLDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLT--NPPQ 363
              + D+   +++       A +   L+KL+     CY+P  ++  + +   K    +P  
Sbjct: 311  FAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPAS 370

Query: 364  PPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKL 423
                  ++ ++   R  VTP ++Y  GPE+  +N V++ + E++ +F+RV+FV+E+  KL
Sbjct: 371  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 430

Query: 424  YSTELS--PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFA 483
             +  LS   +E   ++  +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR N+VWMFA
Sbjct: 431  PANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 490

Query: 484  PRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDA 543
              + + A  IR+WMG F  IR+++K AAR+GQ F +S +T  V  ++V+ IPDIEV +D 
Sbjct: 491  SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTD- 550

Query: 544  GINYVFSDGIGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNS 603
            G +Y FSDGIGKIS +FA++VA+KC + H PSAFQIRY G+KGVI+VD +SF KLSLR+S
Sbjct: 551  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 610

Query: 604  MLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDP 663
            MLK++S +  L+V  W+   PC+LNR++I LLSTLG++D +FE+ Q   +  L  +  D 
Sbjct: 611  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 670

Query: 664  LKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPN 723
              A   L+ +S   + N+L +++  GY P SEP+L MML    ES+L EL+ + RI +P 
Sbjct: 671  DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 730

Query: 724  GRAMMGCLDETGNLEYGEVFVQCS-AHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCL 783
            GR ++GC+DE G LEYG+V+V+ +    +L +    + R    +  +V G VVV KNPCL
Sbjct: 731  GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 790

Query: 784  HPGDVRVLTAVDVPSLHH--MVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP 843
            HPGD+RVL A+          +DC++FPQKG RPHPNECSG DLDGD +FV WD  +IP 
Sbjct: 791  HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 850

Query: 844  QQVEPMDYTPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEP 903
            +   PMDY     RL+DHDVT+EE+ ++F +YM++D+LG+I+ AH   AD  PEKA S+ 
Sbjct: 851  EMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQK 910

Query: 904  CIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDI 963
            C++LA L S AVDF KTG PA +   L+ + +PDF+++ +K +Y S +V GKL+R     
Sbjct: 911  CLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYR----- 970

Query: 964  EPRISIKSVKFTREIARQ-----AYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYK 1023
                ++KS    R+   +     AYD  +E  GFE +++ A  H++ Y  +L +LM YY 
Sbjct: 971  ----AVKSSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYG 1030

Query: 1024 IKTEAELISGVSLTKSSSFTKKNE-----AESIIMAVKSLRKEARGWFNENAGLHFGHDN 1083
               E E+++G+  TK     + N       + I ++VK L KEA GWF ++       + 
Sbjct: 1031 AANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSC----EDEQ 1090

Query: 1084 NAYARASAWYFVTYHYSYWGWYGEKNESHFLSFPWCVYDKLIRIK 1104
                 ASAWY+VTY+ ++        +  FLSFPW V D L+ IK
Sbjct: 1091 QKKKLASAWYYVTYNPNH-----RDEKLTFLSFPWIVGDVLLDIK 1114

BLAST of CmoCh04G000870 vs. Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 701.4 bits (1809), Expect = 1.5e-200
Identity = 417/1127 (37.00%), Postives = 627/1127 (55.63%), Query Frame = 1

Query: 11   PSGVLQESVKAFVERFTGEGSIDAINVKRS-RGRGKRLYAIIQFIDDVGAKLIISLANAS 70
            PS V  E +  F       G   A  +  + RG   R +  +QF     A     LA++ 
Sbjct: 19   PSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAGLASSG 78

Query: 71   L--RYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRESNVSVNFE 130
               R+  + L       D+L           G  L +G +++   F        V     
Sbjct: 79   RLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGVRAEVI 138

Query: 131  FERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSID---YLLIQLVGAPRIYERDT 190
              +R +  ++ H    Y L + +E     ++    G ++D    +L+QL  APRI+   +
Sbjct: 139  PGKRRVDLYLEHDSQRYKLEVLFE-----DMKDCLGCTLDGMGAILLQLNYAPRIHTAIS 198

Query: 191  --KLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDKFA 250
               +     +D F +  ++    W RA DFTP+   G+   L L++    L+ +      
Sbjct: 199  GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLP 258

Query: 251  YFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSLDIS 310
            +   + G+ T+ S     ++ N+VP+V  P    +PY +LF++N L+  G +    ++  
Sbjct: 259  FSGNL-GELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNAD 318

Query: 311  FYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYS-KLTNPPQPPNLSLDE 370
             ++ +     +++   R   K++ L+  CY P +++ +E   YS K ++     N    E
Sbjct: 319  LFKALQELPVDVS--RRIFEKMHKLESTCYGPLQFIQQE--AYSMKRSHNVLLSNEGEGE 378

Query: 371  G---LVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 430
            G   L+  +RV +TP +++  GPE  V+N V++ +  Y  +F+RV+FVDE+  KL S  +
Sbjct: 379  GERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAI 438

Query: 431  SPRESSSL--EDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGI 490
            S R       +  KT ++ RILS+LK G +IG K FEFLA+S+SQLR N+VWMFA    +
Sbjct: 439  SARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASL 498

Query: 491  TAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYV 550
             A  IR+WMG F +IR+V+K AAR+GQ F SS +T  V R +V+VIPDIE+ +D G  Y+
Sbjct: 499  NAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTD-GSKYI 558

Query: 551  FSDGIGKISASFAREVARKCHIRHT--PSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLK 610
            FSDGIGKIS  FA+ VA    +  T  PSAFQIRY G+KGVI++DP S + LSLR SM K
Sbjct: 559  FSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKK 618

Query: 611  YESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKA 670
            +ES    L++ SWS+  PCY+NR++I+LLSTLG++D+IF + Q++ + + + +  +   A
Sbjct: 619  FESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVA 678

Query: 671  QQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRA 730
               L  +   E    +K ++  GY P SEP+L M+L   +E++L ++R + +I +P GR 
Sbjct: 679  LSVLGKLGGSETKTAVKMLLQ-GYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRV 738

Query: 731  MMGCLDETGNLEYGEVFVQCSAHQQLHND-HIIFKRSKSNQHFIVTGTVVVAKNPCLHPG 790
            ++GCLDETG LEYG+V+++ + + +   D +  +  +   +   V G V + KNPCLHPG
Sbjct: 739  LIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPG 798

Query: 791  DVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEP 850
            D+RVL A+  P L  MVDCLVFPQ+G RPHPNECSG DLDGD+YF+ WD  LIP +   P
Sbjct: 799  DIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTP 858

Query: 851  MDYTPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLA 910
            MDYT    R++DH VT+EE+Q++F +YM+NDSLG I+ AH   AD  P KA S  C++LA
Sbjct: 859  MDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLA 918

Query: 911  KLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFR-MLDDIEPRI 970
             L S+AVDF KTG PA +   LR + YPDFM++ +K  Y S+ VLGKL+R  +  +E   
Sbjct: 919  TLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSG 978

Query: 971  SIKSVKFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELIS 1030
               ++  +       YDPD+EV G +E+L  A  +   Y+ +L  LM YY+ + E E+++
Sbjct: 979  DSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILT 1038

Query: 1031 GVSLTKSSSFTKKNE-----AESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAW 1090
            G    K     + N+      + I+ AV +L +EARGW      L    + +A   ASAW
Sbjct: 1039 GNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWL-----LSSRKEEDASRMASAW 1098

Query: 1091 YFVTYHYSYWGWYGEKNESHFLSFPWCVYDKLIRIKKRKIGARARHR 1115
            Y VTYH         +    F SFPW   D L+ IK      R R +
Sbjct: 1099 YRVTYHPD------RRRGKRFWSFPWIACDNLLAIKASSQLRRRRQK 1122

BLAST of CmoCh04G000870 vs. Swiss-Prot
Match: RDR6_ARATH (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 9.5e-166
Identity = 390/1075 (36.28%), Postives = 572/1075 (53.21%), Query Frame = 1

Query: 95   YNFKGLELHLGCQISREEFFVLWRESNV---------SVNFEFERR---DLKFFISHPRV 154
            Y   G+ L +G  +SR++FFV WR   V         +  F F +      K  + H  +
Sbjct: 130  YKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVI 189

Query: 155  --DYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIYER--DTKLFGHISEDPFLSF 214
              DY L L   +I  V  +K     +  L++QL  +PR++ R  D  ++  +  D     
Sbjct: 190  NCDYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVWYRTADDDIYDTVPGDLL--- 249

Query: 215  SKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDKF-AYFNEIKGKFTLASGS 274
              + D  W R TDFT    IG+  +  + I      P + +K     +  + +       
Sbjct: 250  --DDDDPWIRTTDFTQVGAIGRCHSYRVLIS-----PRYENKLRTALDYFRMRRVQEERV 309

Query: 275  TYSSNVNLVPVVRPPLSIH---------LPYAILFKINLLVQQGCLPGPSLDISFYEMV- 334
             +   +   P    P+S H         + + I+F +N ++ +G      L   F++++ 
Sbjct: 310  RWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLR 369

Query: 335  -DPQIHNIAFIDRAL---RKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLDEGL 394
              P+  NIA +       R ++D     Y   K + E  +K  KL    +       E +
Sbjct: 370  NQPKDVNIASLKHLCTYKRPVFD----AYKRLKLVQEWIQKNPKLLGSHEQ-----SEDI 429

Query: 395  VYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSPRES 454
              + R+ +TP R Y   PEV +SNRVLRRY    + FLRV+F+DE +  + S  LS   +
Sbjct: 430  SEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVA 489

Query: 455  SSLED-------GKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGI 514
              ++D        KT +FKR+ S+L DG  +  +K+ FLA+S++QLR+ + W FA     
Sbjct: 490  PIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKT 549

Query: 515  TAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKV-IPDIEVKSDAGINY 574
              + I+ WMG F   +NVAK AAR+G  F S+  T  V   EV   +PDIE        Y
Sbjct: 550  RVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERN-----GY 609

Query: 575  VFSDGIGKISASFAREVAR--KCHIRHTPSAFQIRYAGFKGVISVDPTSF--VKLSLRNS 634
            VFSDGIG I+   A EV    K  + ++P A+QIRYAGFKGV++  P+    ++L+LR+S
Sbjct: 610  VFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDS 669

Query: 635  MLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDP 694
            M K+ S  T L++ SW+R+ P +LNRQ+ITLLS LGV D+IF   Q+ ++ +L+ I  D 
Sbjct: 670  MKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDT 729

Query: 695  LKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPN 754
              A + L   S  E  N    ++S G++P +EP L  ML + R ++L  LR KSRIF+ +
Sbjct: 730  DVAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTS 789

Query: 755  GRAMMGCLDETGNLEYGEVFVQCS--AHQQLHNDH-IIFKRSKSNQHFIVTGTVVVAKNP 814
            GR +MGCLDE G LE+G+ F+Q S  + +   + H   FK +K++   +V G V +AKNP
Sbjct: 790  GRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLE-VVKGYVAIAKNP 849

Query: 815  CLHPGDVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP 874
            CLHPGDVR+L AVDVP LHHM DCL+FPQKG RPH NE SGSDLDGD+YFV WD  LIPP
Sbjct: 850  CLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPP 909

Query: 875  --QQVEPMDYTPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMS 934
              +    M Y     + L   V  +++ ++FA  + N+ LG I NAH   AD     AM 
Sbjct: 910  NRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMD 969

Query: 935  EPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLD 994
            E C+ LA+L + AVDFPKTG    +   L+ ++YPDFM K D Q+YKS+ +LG+L+R + 
Sbjct: 970  EECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVK 1029

Query: 995  DIEPRISIKSVKFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKT 1054
            ++    +  S + + + +   YD  +E+ GFE+ + +A  HK  YD +L  L+  YK++ 
Sbjct: 1030 EVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQK 1089

Query: 1055 EAELISG--VSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNE----NAGLHFGHDNNA 1106
            E E+++G   S+ K +S  +    E +  +  SL+KE R  F E    +  L     N  
Sbjct: 1090 EEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNIL 1149

BLAST of CmoCh04G000870 vs. TrEMBL
Match: E9NWK7_CUCSA (RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=Csa_5G239640 PE=2 SV=1)

HSP 1 Score: 1927.1 bits (4991), Expect = 0.0e+00
Identity = 938/1115 (84.13%), Postives = 1013/1115 (90.85%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+PRVDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSLD 300
            FAYF EIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGP+LD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREVKVIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

BLAST of CmoCh04G000870 vs. TrEMBL
Match: H3K3Y9_CUCSA (RNA-dependent RNA polymerase 1 OS=Cucumis sativus GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1914.8 bits (4959), Expect = 0.0e+00
Identity = 933/1115 (83.68%), Postives = 1009/1115 (90.49%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            NVSV+F F+ R L FFIS+PRVDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEI YGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHDK 240

Query: 241  FAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSLD 300
            FAYF EIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGP+LD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKI KRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQ FGSSTET SVSRREVKVIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVF QCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

BLAST of CmoCh04G000870 vs. TrEMBL
Match: A0A0S1YCZ7_CUCSA (RNA-dependent RNA polymerase 1b OS=Cucumis sativus GN=RDR1b PE=2 SV=1)

HSP 1 Score: 1913.7 bits (4956), Expect = 0.0e+00
Identity = 934/1115 (83.77%), Postives = 1009/1115 (90.49%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+PRVDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSLD 300
            FAYF EIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGP+LD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPS WL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSIWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRR P+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRCPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREVKVIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLIT LSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITFLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFP CVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPRCVYDKLIRIKHRKINCRARY 1115

BLAST of CmoCh04G000870 vs. TrEMBL
Match: B9HJH7_POPTR (RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s13550g PE=4 SV=1)

HSP 1 Score: 1430.2 bits (3701), Expect = 0.0e+00
Identity = 707/1118 (63.24%), Postives = 862/1118 (77.10%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            M KT+++ GFPS     +V+ F+E  TG G+++A+ ++  R  G R YAI+QF     A+
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IISLAN  L YG SYL AR   +DI+  P  F +  + + LH G Q S+E+F  +W  +
Sbjct: 61   QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            NVSVNF    R L FF+SH   +Y L L +ENIWQ+ELH+P+GQ++ YLLIQL GAPRIY
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
            ERD     ++ EDP L++ +++ D +W R TDFTPSC IG S +LCLE+P    LPNF++
Sbjct: 181  ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240

Query: 241  KFAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSL 300
             F Y+ E +G F L SG T+S N +LVP+V P   ++LPY ILF++NLLVQ GCL G  L
Sbjct: 241  NFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSML 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D  FY +VDP    +  I+ AL KLY LKECCY PSKW  E+Y+KY    NPP+ P LSL
Sbjct: 301  DDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELS 420
            D GLVYV++VQ+TPC+V+FCGPEVNVSNRVLR+Y E +DNFLRVSFVDEEL+K++ST++S
Sbjct: 361  DAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVS 420

Query: 421  PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
            PR SS  E  +T I+ RILS L++GI IGDKKFEFLA+SSSQLREN+ WMFA R G+TAA
Sbjct: 421  PRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSD 540
             IR WMG FH IRNVA+YAARLGQSFGSSTET SVS  E+++IPDIEV S  G  Y+FSD
Sbjct: 481  DIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEV-SRGGTRYLFSD 540

Query: 541  GIGKISASFAREVARKCHIR-HTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKISA FAR+VA KC  +  TPSAFQIRYAG+KGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 600

Query: 601  DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
            +TKLDVL+ S+Y PC+LNRQLITLLSTLGV D  FE KQ+E +DQLD +  DPL+AQ+AL
Sbjct: 601  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
            ELMSPGENTNILKE++ CGY+PD+EPFL MML TFR SKLLELR K+RIFIPNGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 720

Query: 721  LDETGNLEYGEVFVQCSA--HQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVR 780
            LDET  LE+G+VFV+ S    + L++   +F      Q +++ G+VVVAKNPCLHPGD+R
Sbjct: 721  LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 780

Query: 781  VLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 840
            +L AVDVP+LHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYFVCWDP+LIP QQ+ PMDY
Sbjct: 781  ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 840

Query: 841  TPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLF 900
            TP P   LDHDVT+EEV+EYF NY+VNDSLG+IANAHTA AD    KAMSEPC++LA+ F
Sbjct: 841  TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 900

Query: 901  SIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIK 960
            SIAVDFPKTGVPA I ++LR + YPDFM+KPDK SY+S NV+GKLFR + DI PR  SI+
Sbjct: 901  SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 960

Query: 961  SVKFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVS 1020
            S  FT ++ARQ YDPDMEV GFE+Y+DDA Y+K+NYD +LGNLM+YY IKTEAEL+SG  
Sbjct: 961  S--FTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1020

Query: 1021 LTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYS 1080
            +  S SFTKK +AE+I MAV+SL+KEAR WFNE         ++  A+ASAWY VTYH++
Sbjct: 1021 MKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1080

Query: 1081 YWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGARAR 1113
            YWG Y E  N  HFLSFPWCVYDKLI+IK+R   AR R
Sbjct: 1081 YWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRN-SARIR 1114

BLAST of CmoCh04G000870 vs. TrEMBL
Match: A0A061EGF4_THECC (RNA-dependent RNA polymerase 1 isoform 1 OS=Theobroma cacao GN=TCM_011292 PE=4 SV=1)

HSP 1 Score: 1422.9 bits (3682), Expect = 0.0e+00
Identity = 705/1114 (63.29%), Postives = 857/1114 (76.93%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQ+  FPS V  E VK F+E +TG+ ++ A+ +++ +  G R YAI+QF     A+
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQK-NGGRAYAIVQFTKSTDAE 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
            LII L N  L YG+SYLKARE + DI+  P  F +  +G+ LH GCQ+S E+F+VLW E 
Sbjct: 61   LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEV 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            +V+VNF    R L+F +SH  V+Y L L YENIWQ+ELH+P+ Q+  YLLIQL GAPRIY
Sbjct: 121  DVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
            E+D +  G + E+P L++  ++ D +W R TDFT S CIGQS  LCLE+PY   LPNF +
Sbjct: 181  EKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRE 240

Query: 241  KFAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSL 300
             FAY+ E +GKF L SGS+YS N+NLVP+V P L I LPY ILFKINLLVQ GC+PGP+L
Sbjct: 241  NFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPAL 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D +FY +V+P   +  +ID AL KLY LKECC+ PSKWL E+Y+ Y      P  P +SL
Sbjct: 301  DANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELS 420
            D+GLV V RVQ+TP RVYFCGPE+NVSNRVLR + + +DNFLR++FVDEEL+K++ST+L 
Sbjct: 361  DDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLL 420

Query: 421  PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
             R         T+I+ RILS LK+GI IGDK+FEFLA+SSSQLREN+ WMFA R+G+TAA
Sbjct: 421  TRNRI------TEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSD 540
             IR WMG+F  IRNVAKYAARLGQSF SSTET SV++ E+++I D+E+K D GINYVFSD
Sbjct: 481  DIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRD-GINYVFSD 540

Query: 541  GIGKISASFAREVARKCHIR-HTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKISA FA++VA KC +   TPSAFQIR  GFKGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESE 600

Query: 601  DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
            +TKLDVL+WS+Y PC+LNRQLITLLSTLGV D  FE KQ+E++DQL+ I  DPLKAQ+AL
Sbjct: 601  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
            ELMSPGENTNILKE++ CGY PD+EPFL MML TFR SKLLELR KSRIF+ NGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGC 720

Query: 721  LDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVL 780
            LDET  L+YG+VFVQ S              S+S Q FIV G VVVAKNPCLHPGDVRVL
Sbjct: 721  LDETRTLDYGQVFVQVSG-------------SRSEQRFIVQGKVVVAKNPCLHPGDVRVL 780

Query: 781  TAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
            TAV+VP LHHMVDC+VFPQKG RPHPNECSGSDLDGDIYFVCWDP+LIP +Q+ PMDY+P
Sbjct: 781  TAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSP 840

Query: 841  VPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSI 900
             P++ L+H+VT+EEV+EYF NY+VNDSLGIIANAHT FAD  P KAMS  C  LAKLFSI
Sbjct: 841  APTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSI 900

Query: 901  AVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEP-RISIKSV 960
            AVDFPKTGVPA I  +LRV+ YPDFM+KPDK +Y+S+NV+GKLFR + D+ P    I+S+
Sbjct: 901  AVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSL 960

Query: 961  KFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLT 1020
              TRE   + YDPDMEV G+E+Y+DDA YHK+NYD +LGNLM+YY IKTEAE++SG  + 
Sbjct: 961  --TRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMK 1020

Query: 1021 KSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYW 1080
             S SFTK+ +AE+I +AV+SLRKEAR WFNE         ++ YA+ASAWY VTYH SYW
Sbjct: 1021 MSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYW 1080

Query: 1081 GWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1111
            G Y E  N +HFLSFPWCVYDKLI IKK+    R
Sbjct: 1081 GLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRR 1091

BLAST of CmoCh04G000870 vs. TAIR10
Match: AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)

HSP 1 Score: 1325.1 bits (3428), Expect = 0.0e+00
Identity = 672/1121 (59.95%), Postives = 828/1121 (73.86%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQ++GFP+GV  E VK F+ER TG G++ AI V++ +  G R+YAI+QF  +   +
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
            LII+ A   L YG SYLKA E +QDI+  P    +   GL++  GCQ+S ++F  LW   
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            +V V+F    R L F  S  + DY L L YENIWQ++LH PQG+S  +L+IQ++GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ERDTK----LFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPN 240
            E++ +    LFG +       +S   D +W R TDFT S CIGQS A CLE+P    +P+
Sbjct: 181  EKEDQPINLLFGIMD-----FYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 240

Query: 241  FHDKFAYFNEIKGK-FTLASGSTYSSNVN-LVPVVRPPLSIHLPYAILFKINLLVQQGCL 300
            F + FA + E +   F + SGS+YSSN N LVPVV PP    LP+ ILFK+N LVQ  CL
Sbjct: 241  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 300

Query: 301  PGPSLDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQP 360
             GP+LD+ FY +++ + ++ A ID  L KL+ L ECCY P+ WL +EY+K+      P  
Sbjct: 301  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 360

Query: 361  PNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLY 420
            P +SLD+GLVY++RVQVTP RVYF GPEVNVSNRVLR Y +Y++NFLRVSFVDE+L+K+ 
Sbjct: 361  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 420

Query: 421  STELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRD 480
            S +LSPR S+     +TK++ RI SVL+DGI IGDKKFEFLA+SSSQLREN+ WMFAP D
Sbjct: 421  SMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 480

Query: 481  GITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGIN 540
             ITAA IR WMGDF  IRNVAKYAARLGQSF SS ET +V   E++VIPD+E+ S  G  
Sbjct: 481  RITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS-LGTR 540

Query: 541  YVFSDGIGKISASFAREVARKCHI-RHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSML 600
            YVFSDGIGKISA FAR+VARKC +   +PSAFQIRY G+KGV++VDP S  KLSLR SM 
Sbjct: 541  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 600

Query: 601  KYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLK 660
            K+ES +TKLDVL+WS+Y PCY+NRQLITLLSTLGV D +FE KQ+E++D+LD I   PL+
Sbjct: 601  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 660

Query: 661  AQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGR 720
            A +AL LM+PGENTNILK +I CGY+PD+EPFL MML  FR SKLLELR K+RIFI  GR
Sbjct: 661  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 720

Query: 721  AMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPG 780
            +MMGCLDET  LEYG+V VQ S               +  + FI+TG VVVAKNPCLHPG
Sbjct: 721  SMMGCLDETRTLEYGQVVVQYS------------DPMRPGRRFIITGPVVVAKNPCLHPG 780

Query: 781  DVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEP 840
            DVRVL AV+VP+L+HMVDC+VFPQKG RPHPNECSGSDLDGDIYFVCWD +L+PP+  EP
Sbjct: 781  DVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEP 840

Query: 841  MDYTPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLA 900
            MDYTP P+++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFAD  P KA S+PCI+LA
Sbjct: 841  MDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELA 900

Query: 901  KLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDD-IEPRI 960
            K FS AVDFPKTGV A+I   L V+ YPDFM+KPDK +Y+S NV+GKLFR + +   P I
Sbjct: 901  KKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLI 960

Query: 961  SIKSVKFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELIS 1020
            SIKS  FT ++A ++YD DMEV GFEEY+D+A Y K NYD +LGNLM YY IKTEAE++S
Sbjct: 961  SIKS--FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILS 1020

Query: 1021 GVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTY 1080
            G  +  S SFTK+ +AESI  AV++LRKE    FN +       + N  A+ASAWY VTY
Sbjct: 1021 GGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASE-----EEENESAKASAWYHVTY 1080

Query: 1081 HYSYWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGARAR 1113
            H SYWG Y E  N  HFLSF WCVYDKL+RIKK  +G R R
Sbjct: 1081 HSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQR 1093

BLAST of CmoCh04G000870 vs. TAIR10
Match: AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)

HSP 1 Score: 736.9 bits (1901), Expect = 1.9e-212
Identity = 419/1125 (37.24%), Postives = 651/1125 (57.87%), Query Frame = 1

Query: 4    TIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGK-RLYAIIQFID-DVGAKL 63
            T+++   P  ++ + +  F+E   GE ++ A+ +  +R   K R +A +QF   +V ++ 
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   IISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREE-FFVLWRES 123
             +  + + L + T  L+  E   DI+  P+        + L +G   S E+ F  L +  
Sbjct: 71   QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 124  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQS--IDYLLIQLVGAPR 183
             V      E+R ++F++      Y + +R+E+I +       G +  ID  L++L   P+
Sbjct: 131  GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190

Query: 184  IYERDT-KLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNF 243
            +++R T  +      D +    ++ D  W R TDF+ S  IG S   CLE+  G  + + 
Sbjct: 191  VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250

Query: 244  HDKFAYFNEIKGKFTLASGSTYSSNVNLVPVVRPP-LSIHLPYAILFKINLLVQ-QGCLP 303
                 Y+ E     T   G T++S   +VP++    L +  PY ILF++N LV  Q    
Sbjct: 251  FSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISL 310

Query: 304  GPSLDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLT--NPPQ 363
              + D+   +++       A +   L+KL+     CY+P  ++  + +   K    +P  
Sbjct: 311  FAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPAS 370

Query: 364  PPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKL 423
                  ++ ++   R  VTP ++Y  GPE+  +N V++ + E++ +F+RV+FV+E+  KL
Sbjct: 371  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 430

Query: 424  YSTELS--PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFA 483
             +  LS   +E   ++  +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR N+VWMFA
Sbjct: 431  PANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 490

Query: 484  PRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDA 543
              + + A  IR+WMG F  IR+++K AAR+GQ F +S +T  V  ++V+ IPDIEV +D 
Sbjct: 491  SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTD- 550

Query: 544  GINYVFSDGIGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNS 603
            G +Y FSDGIGKIS +FA++VA+KC + H PSAFQIRY G+KGVI+VD +SF KLSLR+S
Sbjct: 551  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 610

Query: 604  MLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDP 663
            MLK++S +  L+V  W+   PC+LNR++I LLSTLG++D +FE+ Q   +  L  +  D 
Sbjct: 611  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 670

Query: 664  LKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPN 723
              A   L+ +S   + N+L +++  GY P SEP+L MML    ES+L EL+ + RI +P 
Sbjct: 671  DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 730

Query: 724  GRAMMGCLDETGNLEYGEVFVQCS-AHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCL 783
            GR ++GC+DE G LEYG+V+V+ +    +L +    + R    +  +V G VVV KNPCL
Sbjct: 731  GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 790

Query: 784  HPGDVRVLTAVDVPSLHH--MVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP 843
            HPGD+RVL A+          +DC++FPQKG RPHPNECSG DLDGD +FV WD  +IP 
Sbjct: 791  HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 850

Query: 844  QQVEPMDYTPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEP 903
            +   PMDY     RL+DHDVT+EE+ ++F +YM++D+LG+I+ AH   AD  PEKA S+ 
Sbjct: 851  EMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQK 910

Query: 904  CIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDI 963
            C++LA L S AVDF KTG PA +   L+ + +PDF+++ +K +Y S +V GKL+R     
Sbjct: 911  CLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYR----- 970

Query: 964  EPRISIKSVKFTREIARQ-----AYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYK 1023
                ++KS    R+   +     AYD  +E  GFE +++ A  H++ Y  +L +LM YY 
Sbjct: 971  ----AVKSSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYG 1030

Query: 1024 IKTEAELISGVSLTKSSSFTKKNE-----AESIIMAVKSLRKEARGWFNENAGLHFGHDN 1083
               E E+++G+  TK     + N       + I ++VK L KEA GWF ++       + 
Sbjct: 1031 AANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSC----EDEQ 1090

Query: 1084 NAYARASAWYFVTYHYSYWGWYGEKNESHFLSFPWCVYDKLIRIK 1104
                 ASAWY+VTY+ ++        +  FLSFPW V D L+ IK
Sbjct: 1091 QKKKLASAWYYVTYNPNH-----RDEKLTFLSFPWIVGDVLLDIK 1114

BLAST of CmoCh04G000870 vs. TAIR10
Match: AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)

HSP 1 Score: 585.9 bits (1509), Expect = 5.3e-167
Identity = 390/1075 (36.28%), Postives = 572/1075 (53.21%), Query Frame = 1

Query: 95   YNFKGLELHLGCQISREEFFVLWRESNV---------SVNFEFERR---DLKFFISHPRV 154
            Y   G+ L +G  +SR++FFV WR   V         +  F F +      K  + H  +
Sbjct: 130  YKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVI 189

Query: 155  --DYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIYER--DTKLFGHISEDPFLSF 214
              DY L L   +I  V  +K     +  L++QL  +PR++ R  D  ++  +  D     
Sbjct: 190  NCDYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVWYRTADDDIYDTVPGDLL--- 249

Query: 215  SKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDKF-AYFNEIKGKFTLASGS 274
              + D  W R TDFT    IG+  +  + I      P + +K     +  + +       
Sbjct: 250  --DDDDPWIRTTDFTQVGAIGRCHSYRVLIS-----PRYENKLRTALDYFRMRRVQEERV 309

Query: 275  TYSSNVNLVPVVRPPLSIH---------LPYAILFKINLLVQQGCLPGPSLDISFYEMV- 334
             +   +   P    P+S H         + + I+F +N ++ +G      L   F++++ 
Sbjct: 310  RWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLR 369

Query: 335  -DPQIHNIAFIDRAL---RKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLDEGL 394
              P+  NIA +       R ++D     Y   K + E  +K  KL    +       E +
Sbjct: 370  NQPKDVNIASLKHLCTYKRPVFD----AYKRLKLVQEWIQKNPKLLGSHEQ-----SEDI 429

Query: 395  VYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSPRES 454
              + R+ +TP R Y   PEV +SNRVLRRY    + FLRV+F+DE +  + S  LS   +
Sbjct: 430  SEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVA 489

Query: 455  SSLED-------GKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGI 514
              ++D        KT +FKR+ S+L DG  +  +K+ FLA+S++QLR+ + W FA     
Sbjct: 490  PIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKT 549

Query: 515  TAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKV-IPDIEVKSDAGINY 574
              + I+ WMG F   +NVAK AAR+G  F S+  T  V   EV   +PDIE        Y
Sbjct: 550  RVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERN-----GY 609

Query: 575  VFSDGIGKISASFAREVAR--KCHIRHTPSAFQIRYAGFKGVISVDPTSF--VKLSLRNS 634
            VFSDGIG I+   A EV    K  + ++P A+QIRYAGFKGV++  P+    ++L+LR+S
Sbjct: 610  VFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDS 669

Query: 635  MLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDP 694
            M K+ S  T L++ SW+R+ P +LNRQ+ITLLS LGV D+IF   Q+ ++ +L+ I  D 
Sbjct: 670  MKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDT 729

Query: 695  LKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPN 754
              A + L   S  E  N    ++S G++P +EP L  ML + R ++L  LR KSRIF+ +
Sbjct: 730  DVAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTS 789

Query: 755  GRAMMGCLDETGNLEYGEVFVQCS--AHQQLHNDH-IIFKRSKSNQHFIVTGTVVVAKNP 814
            GR +MGCLDE G LE+G+ F+Q S  + +   + H   FK +K++   +V G V +AKNP
Sbjct: 790  GRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLE-VVKGYVAIAKNP 849

Query: 815  CLHPGDVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP 874
            CLHPGDVR+L AVDVP LHHM DCL+FPQKG RPH NE SGSDLDGD+YFV WD  LIPP
Sbjct: 850  CLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPP 909

Query: 875  --QQVEPMDYTPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMS 934
              +    M Y     + L   V  +++ ++FA  + N+ LG I NAH   AD     AM 
Sbjct: 910  NRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMD 969

Query: 935  EPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLD 994
            E C+ LA+L + AVDFPKTG    +   L+ ++YPDFM K D Q+YKS+ +LG+L+R + 
Sbjct: 970  EECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVK 1029

Query: 995  DIEPRISIKSVKFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKT 1054
            ++    +  S + + + +   YD  +E+ GFE+ + +A  HK  YD +L  L+  YK++ 
Sbjct: 1030 EVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQK 1089

Query: 1055 EAELISG--VSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNE----NAGLHFGHDNNA 1106
            E E+++G   S+ K +S  +    E +  +  SL+KE R  F E    +  L     N  
Sbjct: 1090 EEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNIL 1149

BLAST of CmoCh04G000870 vs. TAIR10
Match: AT2G19920.1 (AT2G19920.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 120.6 bits (301), Expect = 6.3e-27
Identity = 183/723 (25.31%), Postives = 294/723 (40.66%), Query Frame = 1

Query: 321 LRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTP-----CR 380
           +R+  DL    Y  + W         KL    +   L  D G  + ++  V P      +
Sbjct: 178 IRQWKDLPMVAYERAVWF--------KLGQNEERMQLESDSGKTHYYQCHVAPDGSYRLK 237

Query: 381 VYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFK 440
            YF        ++VL       DN L V F     D+L      P+ES+  ++  +K +K
Sbjct: 238 GYFLENTGTHLHKVLGD-----DNVLTVRF-----DQL------PKESTYCDNPYSK-YK 297

Query: 441 RILSVLKDGITIGDKKFEFLAYSSSQLRENA-------VWMFAPRDGITAA--------- 500
            I    K+GI +G ++++F  +      E         V  +  R G TA+         
Sbjct: 298 EIA---KNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPYIL 357

Query: 501 ------KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKV--IPDI------ 560
                 + R      H++ + A Y AR      S T+   V   E+ V  I DI      
Sbjct: 358 SGMSIHEARMHFMHVHTLPSPANYMARFSLIL-SKTKKLEVDMTEITVMQIDDIHCHDQS 417

Query: 561 --EVKSDAGINYVFSDGIGKISASFAR---------EVARKCHIRHT-----PSAFQ--- 620
             +V    G   + SDG G IS   AR         +  R  +I+ T     P   Q   
Sbjct: 418 NNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIRM 477

Query: 621 -IRYAGFKGVISVD---PTSFVKLSLRNSMLKYE--------STDTKLDVLSWSRYHP-C 680
               +  KG+  ++   P   V++  R SM+K          ST   L+V++ S      
Sbjct: 478 FNDGSAVKGIFLLNKNLPPQTVQV--RPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRA 537

Query: 681 YLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALELMSPGENTNILKEI 740
            L++ L+ LLS  GV +D F       +++  TIF     A +A       ++ N L ++
Sbjct: 538 KLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QM 597

Query: 741 ISCGYRPDSEPFLYMMLHTFRESKLLELRRKS----RIFIPNGRAMMGCLDETGNLEYGE 800
           I  G  P  EP+L   L     SKLL+L +      ++ I     +MG +D TG L+  E
Sbjct: 598 IMAGI-PLDEPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDE 657

Query: 801 VFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHM 860
           V     +                         V+V +NP LH GD+ +L A  V SL   
Sbjct: 658 VSGLAKSQD-----------------------VLVYRNPGLHFGDIHILKATYVKSLEQY 717

Query: 861 VDC----LVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMD---------- 920
           V      + FPQKGPR   +E +G D DGD+YF+  +P L+  +  +P +          
Sbjct: 718 VGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLL--EHYKPSEPWVSSSPRSK 777

Query: 921 -YTPVPSRLLDHDVTMEEVQEYF--ANYMVNDSLGIIANAHTAFAD--------SRPEKA 947
            YT      L  +   EE+ + F    +  +  +G  A++  A  D        +  EKA
Sbjct: 778 IYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKA 835

BLAST of CmoCh04G000870 vs. TAIR10
Match: AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-26
Identity = 108/394 (27.41%), Postives = 182/394 (46.19%), Query Frame = 1

Query: 586 LSLRNSMLK-YE-------STDTKLDVLSWSRY-HPCYLNRQLITLLSTLGVQDDIFESK 645
           + +R SM+K YE       ST   L+V++ S       L+R L+ LLS  GV +D F + 
Sbjct: 479 VQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNI 538

Query: 646 QKELIDQLDTIFMDPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRES 705
            +  +++  TIF     A +A       + T    ++I  G  P  EP+L   L    ++
Sbjct: 539 LRNTLEESKTIFYSERAAFKAAINYGDDQYT---ADMILVGI-PLDEPYLKDRLSYLLKT 598

Query: 706 KLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHF 765
           +   L+   R  I     +MG +D TG L+  E+ V   + Q                  
Sbjct: 599 ERNALKA-GRFPIDESYYIMGTVDPTGELKENEICVILHSGQ------------------ 658

Query: 766 IVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVD----CLVFPQKGPRPHPNECSGSDL 825
            ++G V+V +NP LH GD+ VL A  V +L   V      + FPQKGPR   +E +G D 
Sbjct: 659 -ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDF 718

Query: 826 DGDIYFVCWDPDLIPP-QQVEPMDYTPVPSRL--------LDHDVTMEEVQEYF--ANYM 885
           DGD+YF+  +P L+   +  EP   +  PS++        L  +   EE+ + F  A + 
Sbjct: 719 DGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFC 778

Query: 886 VNDSLGIIANAHTAFAD---------SRPEKAMSEPCIKLAKLFSIAVDFPKTGVPALIS 945
             D +G+ A+      D         ++ +    +  +KL  ++  A+D PK G    + 
Sbjct: 779 KRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLP 838

Query: 946 ADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLD 947
            DL ++ +P +M++  K+ ++S ++LG +F  +D
Sbjct: 839 PDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVD 848

BLAST of CmoCh04G000870 vs. NCBI nr
Match: gi|525507284|ref|NP_001267682.1| (RNA-dependent RNA polymerase 1-like [Cucumis sativus])

HSP 1 Score: 1927.1 bits (4991), Expect = 0.0e+00
Identity = 938/1115 (84.13%), Postives = 1013/1115 (90.85%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+PRVDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSLD 300
            FAYF EIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGP+LD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREVKVIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

BLAST of CmoCh04G000870 vs. NCBI nr
Match: gi|377347180|dbj|BAL63010.1| (RNA-dependent RNA polymerase 1 [Cucumis sativus])

HSP 1 Score: 1914.8 bits (4959), Expect = 0.0e+00
Identity = 933/1115 (83.68%), Postives = 1009/1115 (90.49%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            NVSV+F F+ R L FFIS+PRVDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEI YGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHDK 240

Query: 241  FAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSLD 300
            FAYF EIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGP+LD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPSKWL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKI KRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQ FGSSTET SVSRREVKVIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVF QCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFPWCVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

BLAST of CmoCh04G000870 vs. NCBI nr
Match: gi|948561977|gb|ALM88234.1| (RNA-dependent RNA polymerase 1b [Cucumis sativus])

HSP 1 Score: 1913.7 bits (4956), Expect = 0.0e+00
Identity = 934/1115 (83.77%), Postives = 1009/1115 (90.49%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MGKTIQL+GFPSGVLQESVK FVE  TG G+IDAIN KRS+G G+R+YAIIQF D+ GAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IIS A   L YGTSYLKARE K DIL DPLVF+YNFK L LHLGCQIS+E F VLW ES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            NVSV+F FE R L FFIS+PRVDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240
            ERD + FG I+EDPFL+FS E+DT+WFRATDFTPSC IGQS ALCLEIPYGR LPNFHDK
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSLD 300
            FAYF EIKGKFTL SGSTYSSNVNLVPVV PP +I+LPY ILFKINLLVQQGCLPGP+LD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360
            ISFY+MVD QI+N A ID AL+KL  LKECCYNPS WL EEYRKY KL NPPQPP L+L+
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSIWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRR P+Y+DNFLRVSFVDEEL K+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRCPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ +TAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSDG 540
            IR+WMGDFH+IRNVAKYAARLGQSFGSSTET SVSRREVKVIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600
            IGKI+ASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYESTDT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLIT LSTLGVQD +FESKQ+ELID+LDTIF DPLKAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITFLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKE++ CGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NLEYGEVFVQCSAHQQLH+D +IFKR KSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHM+DC+VFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  P+KAMS PCI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKSVKF 960
            DFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD I P I +I+S  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKS 1020
            T E+ARQ YDPDMEV+GFEEYLDDA+YHKNNYDMRLGNLM Y+KIKTEAELISG SLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 SSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGW 1080
             SFT KNEAESII+AVKSLRKEARGWFNE A LH+GH  N YARASAWYFVTYH++YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 Y-GEKNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
              G KN  HFLSFP CVYDKLIRIK RKI  RAR+
Sbjct: 1081 SDGRKNHGHFLSFPRCVYDKLIRIKHRKINCRARY 1115

BLAST of CmoCh04G000870 vs. NCBI nr
Match: gi|1009154798|ref|XP_015895367.1| (PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba])

HSP 1 Score: 1464.5 bits (3790), Expect = 0.0e+00
Identity = 725/1118 (64.85%), Postives = 872/1118 (78.00%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            MG+TIQ+ GFPS V  E VK F+E  TGEG++ AI +++ +  G R YAI+QF     A+
Sbjct: 1    MGRTIQVSGFPSSVSAELVKKFLENLTGEGTVYAIKLRKFKNGG-RYYAIVQFTSTRDAE 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IISLA A L YGTSYL AR    DI+  P  + ++ + + LH GCQIS+E+F VLW+  
Sbjct: 61   FIISLAGARLWYGTSYLTARSMDTDIVAKPRTYLHSLENITLHFGCQISKEKFSVLWKRE 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            NVSV+F    R L F   +  V+Y L L YENIWQ+ELH+P GQ++ YLLIQL GAPRIY
Sbjct: 121  NVSVDFGIGLRRLHFHFMYQYVEYKLQLSYENIWQIELHRPLGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
            E+D    G + EDP  +F K+  D +W RATDFTPSC IGQS ALCLE+P G  LPNF +
Sbjct: 181  EKDVPSSGDVYEDPIFNFFKDTPDDQWVRATDFTPSCRIGQSSALCLELPSGPRLPNFKE 240

Query: 241  KFAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSL 300
             FAY+ E +G+F+L +G  +S N+ LVP+V PPL +HLPY I+FKIN L+QQGCL GPSL
Sbjct: 241  NFAYYKESEGRFSLETGFPFSCNLYLVPIVGPPLDVHLPYDIIFKINALLQQGCLTGPSL 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D +FY +VDP+  N+A I+ AL KLY+LKECCY PS WL E+YRKY K   PP+ P +SL
Sbjct: 301  DAAFYRLVDPRRINVACIEHALDKLYNLKECCYEPSTWLNEQYRKYFKSKRPPKSPMISL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELS 420
            D GLVYV RVQ+TPC+VYF GPE+NVSNRVLR YP ++DNFLRVSFVDEELDK+YST+LS
Sbjct: 361  DAGLVYVRRVQITPCKVYFFGPEINVSNRVLRHYPNHIDNFLRVSFVDEELDKMYSTDLS 420

Query: 421  PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
            PR S++    KT ++KR+LSVL+DGI IG+KKFEFLA+SSSQLR+N+ WMFAP DGITAA
Sbjct: 421  PRNSAT----KTGLYKRVLSVLRDGIIIGNKKFEFLAFSSSQLRDNSTWMFAPSDGITAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSD 540
             IR+WMGDF  IRNVAKYAARLGQSFGSSTET SVSR EV+ IPDIEV    G+ Y FSD
Sbjct: 481  DIREWMGDFRQIRNVAKYAARLGQSFGSSTETLSVSRHEVEKIPDIEVVY-GGVKYAFSD 540

Query: 541  GIGKISASFAREVARKCHIRH-TPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKIS+ FAR+VA KC     TPSAFQIRY G+KGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISSEFARKVASKCGCNGVTPSAFQIRYGGYKGVVAVDPTSSFKLSLRKSMCKYESD 600

Query: 601  DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
            + KLDVL++S++ PC+LNRQLI+LLSTLGV+D +F  KQ + + QLD I  DPL+AQ+AL
Sbjct: 601  NIKLDVLAYSKFQPCFLNRQLISLLSTLGVEDQVFLKKQSKAVQQLDAILTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
            +LMSPGENTN+LKE++ CGY+PD+EP+L MML TFR SKLLELR KSRIFIP+GRAMMGC
Sbjct: 661  DLMSPGENTNVLKELLMCGYKPDTEPYLSMMLQTFRASKLLELRTKSRIFIPDGRAMMGC 720

Query: 721  LDETGNLEYGEVFVQCSAHQ-QLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRV 780
            LDET  LEYG+VFVQ S  + +   D  +   + + Q FIVTG+VVVAKNPCLHPGDVRV
Sbjct: 721  LDETRTLEYGQVFVQFSGSRYRQFGDSPMLGGNGTKQRFIVTGSVVVAKNPCLHPGDVRV 780

Query: 781  LTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYT 840
            L AV+V  LHHMVDC+VFPQKG RPHPNECSGSDLDGDIYFVCWDP+LIP  Q+EPMDYT
Sbjct: 781  LRAVNVSELHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPCHQIEPMDYT 840

Query: 841  PVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFS 900
            P PS L D DVT+EEVQEYFANY+VNDSLGIIANAHT FAD    KAMS PC++LA+LFS
Sbjct: 841  PAPSMLKDDDVTIEEVQEYFANYIVNDSLGIIANAHTVFADKEYGKAMSSPCVELARLFS 900

Query: 901  IAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIKS 960
            IAVDFPKTG+PA+I   L V+ YPDFM+KPDKQ+Y+S NV+GKLFR + DI P   SI+S
Sbjct: 901  IAVDFPKTGIPAVIPPHLHVKEYPDFMEKPDKQTYESQNVIGKLFREVKDIAPNTSSIRS 960

Query: 961  VKFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSL 1020
              FT E+AR++YDPDMEV GFE+YLDDA Y+KN+YD +LGNL+ YY IKTEAE++SG  L
Sbjct: 961  --FTSEVARKSYDPDMEVDGFEDYLDDAYYYKNSYDYKLGNLLDYYGIKTEAEILSGSIL 1020

Query: 1021 TKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSY 1080
              S SFTK+ +AESI MAV++LRKEAR WFNE         ++ YA+ASAWY VTYH SY
Sbjct: 1021 RMSKSFTKRRDAESINMAVRALRKEARNWFNEKRSGGDFESDDLYAKASAWYHVTYHPSY 1080

Query: 1081 WGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGARARH 1114
            WG Y E  N  H+LSF WCVYD+L+ IK+ K  +R RH
Sbjct: 1081 WGSYNEGMNRDHYLSFAWCVYDRLVEIKEDK-ASRRRH 1109

BLAST of CmoCh04G000870 vs. NCBI nr
Match: gi|743785128|ref|XP_011024314.1| (PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus euphratica])

HSP 1 Score: 1436.4 bits (3717), Expect = 0.0e+00
Identity = 708/1116 (63.44%), Postives = 862/1116 (77.24%), Query Frame = 1

Query: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
            M KT+Q+ GFPS     +V+ F+E +TG G+++A+ ++ +R RG R YAI+QF      +
Sbjct: 1    MSKTVQVSGFPSSATAGAVQVFLESYTGGGTVEALKIRETRTRGARKYAIVQFTTTRATE 60

Query: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
             IISLAN  L YG SYL AR   +DI+  P    +  + + LH G Q S+E+F  +W  +
Sbjct: 61   QIISLANQRLWYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180
            NVSVNF    R L FF+SH   +Y L L +ENIWQ+ELH+P+GQ++ YLLIQL GAPRIY
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 181  ERDTKLFGHISEDPFLSFSKEM-DTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
            ER+     ++ EDP L++ +++ D +W R TDFTPSC IG S +LCLE+P    LPNF++
Sbjct: 181  EREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPNFNE 240

Query: 241  KFAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSL 300
             F Y+ E +G F L SGST+S N +LVP+V P   ++LPY ILF++NLLVQ GCL G  L
Sbjct: 241  NFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSML 300

Query: 301  DISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSL 360
            D  FY +VDP    +  I+ AL KLY LKECCY PSKW  E+YRKY    NPP+ P LSL
Sbjct: 301  DDIFYRLVDPNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPVLSL 360

Query: 361  DEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELS 420
            D GLVYV++VQ+TPC+V+FCGPEVN+SNRVLR+Y E +DNFLRVSFVDEEL+K++ST++S
Sbjct: 361  DAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHSTDVS 420

Query: 421  PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAA 480
            PR SS  E  +T I+ RILS L++GI IGDKKFEFLA+SSSQLREN+ WMFA R G+TAA
Sbjct: 421  PRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAA 480

Query: 481  KIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSD 540
             IR+WMG FH IRNVA+YAARLGQSF SSTET SVSR E+++I DIEV S  G  Y+FSD
Sbjct: 481  DIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEV-SRGGTRYLFSD 540

Query: 541  GIGKISASFAREVARKCHIR-HTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
            GIGKISA FAR+VA KC  +  TPSAFQIRYAG+KGV++VDPTS  KLSLR SM KYES 
Sbjct: 541  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYESE 600

Query: 601  DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
            +TKLDVL+ S+Y PC+LNRQLITLLSTLGV D  FE KQ+E +DQLD I  DPL+AQ+AL
Sbjct: 601  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
             LMSPGENTNILKE++ CGY+PD+EPFL MML TFR SKLLELR K+RIFIPNGR MMGC
Sbjct: 661  VLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMMGC 720

Query: 721  LDETGNLEYGEVFVQCSA--HQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVR 780
            LDET  LE+G+VFVQ S    + L++   +F      Q +++ G+VVVAKNPCLHPGDVR
Sbjct: 721  LDETRTLEHGQVFVQFSGSRFRNLYDSSDVFSERGRGQCYLIEGSVVVAKNPCLHPGDVR 780

Query: 781  VLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 840
            +L AVDVP+LHHMVDC+VFPQKGPRPHPN+CSGSDLDGDIYFVCWDP+LIP QQ+ PMDY
Sbjct: 781  ILKAVDVPALHHMVDCVVFPQKGPRPHPNQCSGSDLDGDIYFVCWDPELIPSQQISPMDY 840

Query: 841  TPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLF 900
            TP P+  LDHDVT+EEV+EYF NY+VNDSLGIIANAHTAFAD    KAMSEPC++LA+ F
Sbjct: 841  TPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELARKF 900

Query: 901  SIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRI-SIK 960
            SIAVDFPKTGVPA I ++LRV+ YPDFM+KPDK SY+S NV+GKLFR + DI PR  SI+
Sbjct: 901  SIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 960

Query: 961  SVKFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVS 1020
            S  FT ++ARQ YDPDMEV GFE+Y+DDA Y+K+NYD +LGNLM+YY IKTEAEL+SG  
Sbjct: 961  S--FTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1020

Query: 1021 LTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYS 1080
            +  S SFTKK +AE+I MAV+SLRKEAR WFNE         ++  A+ASAWY VTYH++
Sbjct: 1021 MKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1080

Query: 1081 YWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1111
            YWG Y E  N  HFLSFPWC+YDKLI+IKK     R
Sbjct: 1081 YWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIR 1113