Cucsa.108250 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.108250
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NADH dehydrogenase 1 alpha subcomplex subunit 5
Location	scaffold00931 : 431566 .. 433342 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCCCCTCCATCCTCCTGAAGCGACTGGCTCGTTACCACTGAGAAGCGTGATCAAGAGGAAGAGACAAGAGTTTTCCGACGATGTTCCTGCGAGCGATCGGACGGCCATTATTGGCCAAAGTGAAGCAAACGACGGGGATCGTCGGTCTGGATGTTGTTCCCAACGCCCGAGAGGTCTTGATCGGCCTTTACAGTAAAACCCTAAAGGAGATCCAGGCCGTCCCCGAGGACGAAGGATACCGTAAGGCGGTTGAGAGCTTTACGCGGCACCGCTTGAAGGTCTGCCAGGAAGAAGAGGATTGGGAGAATATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTAATCGAGGAGGCCCAGGACGAGCTCAAACTCATTGGTAAAATGATCGGTATGTGTTCAATTCATTGCCACCAAAATTTTAAGTTTACGAATTTGTGAAATTTTGTTGTCTGTAGATTTTCATTTCATTTTCTCGTCCTGTCTGTGTCTGGTTAGGATGGAATGTAAGAATTGGAAAAGGGAGGCATCAGGATTTGTAATCATATTTACATTTTTGCATTCCATTAGAATGACGAAAAAACATCTTCCCCCATGCCTTAGAGGATAAAAATTAACGACTTTCAAGGATTGAGAGTCAAGGAATGAAATTTGCATCTTGTTGCACTGAAAAACTTGGGCCACACCCATCAATTAGACCGTGTTTATCCTTCTTCCGTTCTACCCTTTTCTCATCTCGTCGAACCATTTTCCTTATCGCATAGCAGCAATATTTGATTTTCCTTTCGTCTTAACCTAAGATATTAGCTATCAAAATTGTCTAGGTATCTATTCATTTTACAGGAGTGGTATAAAGCTTCTTCAATGTATGAATCTCAGGTCCTTCGCTGGTCTTTAGCCACGATTTAGACTATTGGATCACCACTTGACCCATTAATATCTCTGAACTTTTTGAAGTTCGTCTTTTGTTCTCACTAAGGTGGATGAAAGTGCCATTTTGCAAAAGTCAACCTGGACTTATCAACTAGACAAGAAGCTTGAAATTCTTCACTAACGACAGAAATTATTTTCATACTGATTCACTGGCACTATATTTCTTTCTTTCCTCAATCTTAAGGAGGTTTGTTTGTTCAGCTTTTTAGTTTGATTGAGAGTGATTACTAGTTTGCCTAACTTGTCTGGTCTATTGCATTTGGAGAACACTTGAACTATTCCAGATATGGATCTTTGTAGAAATCTGTCAGTTCAACACAATTTGTTGGTGTTGTTTTAGTGATTAGTTTACTTCAACTATGCAGAGTGGGATCCCTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATCGAGAATGATGCTCCAGTACCGAAGCACATTCCTTTGCACCGACCAGGCCCTCTCCCTGAAGAGTTTTACAAGACGCTGGAGGCCATTAGTGGTGATAGTACTAAAAAAGTAGAGACACCCGAGAAAGCATCTCAGGTGACAGAATGACCTCTTTTTCATCATTTGAAGGATTCGAGTTTCGGATCCCGTTCTTTGTTTTTGGCTTTGATGTTATCTATTTTTGCTTGTTCCCCGATAGAGTGCCTGTATGCAGGGATTGTTCACAAAGTCATGTGTTTCAATAATCTCTATCCAATGTTGGAATTACATAAATTCACTTTTTCATTGCCTTGTTTACTTTTTACCGTGGACATCAAACCCCGTCATGGTTGGACTTTAGAATGAGCAATATTAAATTTAATTTTCCTACCATCTAAATACAAACTCTA

mRNA sequence

TGGCCCCTCCATCCTCCTGAAGCGACTGGCTCGTTACCACTGAGAAGCGTGATCAAGAGGAAGAGACAAGAGTTTTCCGACGATGTTCCTGCGAGCGATCGGACGGCCATTATTGGCCAAAGTGAAGCAAACGACGGGGATCGTCGGTCTGGATGTTGTTCCCAACGCCCGAGAGGTCTTGATCGGCCTTTACAGTAAAACCCTAAAGGAGATCCAGGCCGTCCCCGAGGACGAAGGATACCGTAAGGCGGTTGAGAGCTTTACGCGGCACCGCTTGAAGGTCTGCCAGGAAGAAGAGGATTGGGAGAATATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTAATCGAGGAGGCCCAGGACGAGCTCAAACTCATTGGTAAAATGATCGAGTGGGATCCCTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATCGAGAATGATGCTCCAGTACCGAAGCACATTCCTTTGCACCGACCAGGCCCTCTCCCTGAAGAGTTTTACAAGACGCTGGAGGCCATTAGTGGTGATAGTACTAAAAAAGTAGAGACACCCGAGAAAGCATCTCAGGTGACAGAATGACCTCTTTTTCATCATTTGAAGGATTCGAGTTTCGGATCCCGTTCTTTGTTTTTGGCTTTGATGTTATCTATTTTTGCTTGTTCCCCGATAGAGTGCCTGTATGCAGGGATTGTTCACAAAGTCATGTGTTTCAATAATCTCTATCCAATGTTGGAATTACATAAATTCACTTTTTCATTGCCTTGTTTACTTTTTACCGTGGACATCAAACCCCGTCATGGTTGGACTTTAGAATGAGCAATATTAAATTTAATTTTCCTACCATCTAAATACAAACTCTA

Coding sequence (CDS)

ATGTTCCTGCGAGCGATCGGACGGCCATTATTGGCCAAAGTGAAGCAAACGACGGGGATCGTCGGTCTGGATGTTGTTCCCAACGCCCGAGAGGTCTTGATCGGCCTTTACAGTAAAACCCTAAAGGAGATCCAGGCCGTCCCCGAGGACGAAGGATACCGTAAGGCGGTTGAGAGCTTTACGCGGCACCGCTTGAAGGTCTGCCAGGAAGAAGAGGATTGGGAGAATATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTAATCGAGGAGGCCCAGGACGAGCTCAAACTCATTGGTAAAATGATCGAGTGGGATCCCTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATCGAGAATGATGCTCCAGTACCGAAGCACATTCCTTTGCACCGACCAGGCCCTCTCCCTGAAGAGTTTTACAAGACGCTGGAGGCCATTAGTGGTGATAGTACTAAAAAAGTAGAGACACCCGAGAAAGCATCTCAGGTGACAGAATGA

Protein sequence

MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESFTRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE*

Homology

[Close]

BLAST of Cucsa.108250 vs. Swiss-Prot
Match: NDUA5_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840 PE=1 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.8e-76
Identity = 139/160 (86.88%), Postives = 146/160 (91.25%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPLLAKVKQTTGIVGLDVVPNAR VLI LYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TR RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LIGKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETP 161
           ENDAP+PKH+P HRPGPLPE+FYKTLE +  +S  K E P
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAES--KTEIP 158

[Close]

BLAST of Cucsa.108250 vs. Swiss-Prot
Match: NDUA5_DICDI (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyostelium discoideum GN=ndufa5 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-18
Identity = 45/107 (42.06%), Postives = 71/107 (66.36%), Query Frame = 1


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K++TGI GL V PNAR +L GLY++ LK+++ +P   GYRK+ E  T+ RL V + E D
Sbjct: 6   IKKSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETD 65

Query: 74  WENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 121
              IE ++  GQ+EELI +A+++LK++  + E   W +PD  +  V+
Sbjct: 66  IVKIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPDKNKPPVV 112

[Close]

BLAST of Cucsa.108250 vs. Swiss-Prot
Match: NDUA5_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus GN=NDUFA5 PE=1 SV=3)

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-15
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 1


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY+K L  +  +P++  YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPD 64

Query: 74  WENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPW 110
            + +E+RL  GQ+EE+I +A++EL L  KMI+W PW
Sbjct: 65  VKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 100

[Close]

BLAST of Cucsa.108250 vs. Swiss-Prot
Match: NDUA5_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus GN=Ndufa5 PE=1 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY+KTL  ++  P+   YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPD 64

Query: 74  WENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPW 110
            + +E  L  G+VEE+I +A+ EL L  KM++W PW
Sbjct: 65  VKKLEALLQGGEVEEVILQAEKELSLARKMLKWKPW 100

[Close]

BLAST of Cucsa.108250 vs. Swiss-Prot
Match: NDUA5_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Macaca fascicularis GN=NDUFA5 PE=3 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-13
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY+K L  +  +P++  YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCSTPHERLSILYTKILDVLAEIPKNAAYRKYTEQITNEKLAMVKAEPD 64

Query: 74  WENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPW 110
            + +E +L  GQ+EE+I +A+ EL L  KM +W PW
Sbjct: 65  VKKLEDQLQGGQLEEVILQAEHELSLARKMRDWKPW 100

[Close]

BLAST of Cucsa.108250 vs. TrEMBL
Match: A0A0A0L623_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G184070 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.2e-79
Identity = 151/168 (89.88%), Postives = 153/168 (91.07%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWENIEKRLGCGQ+  LIE             +WDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQLFSLIE-------------KWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE 169
           ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE
Sbjct: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE 155

[Close]

BLAST of Cucsa.108250 vs. TrEMBL
Match: A0A061G198_THECC (NADH-ubiquinone oxidoreductase-related OS=Theobroma cacao GN=TCM_015272 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.6e-77
Identity = 142/161 (88.20%), Postives = 149/161 (92.55%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR I RPLLAKVK+TTGIVGLDVVPNAREVLIGLY+KTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRLISRPLLAKVKETTGIVGLDVVPNAREVLIGLYTKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEE DWE IEKRLGCGQVEELIEEA+DEL LIGKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEGDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPE 162
           ENDAPVPKH+PLHRPGPLPEEFY+TLEA+S     KV + E
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYQTLEAVSKKDAPKVTSGE 161

[Close]

BLAST of Cucsa.108250 vs. TrEMBL
Match: V4MNG3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026409mg PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.6e-77
Identity = 143/164 (87.20%), Postives = 149/164 (90.85%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAR VLI LYSKTLKEIQ VPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNARTVLIDLYSKTLKEIQVVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDEL L+GKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEAIEKRLGCGQVEELIEEAQDELTLVGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKAS 165
           ENDAP+PKH+P HRPGPLPEEFYKTL+AI+ +S  K E P   S
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLQAINSES--KTEIPAARS 162

[Close]

BLAST of Cucsa.108250 vs. TrEMBL
Match: A0A0B0PIL0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_06511 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 7.4e-77
Identity = 141/157 (89.81%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR I RPLLAKVK+TTGIVGLDVVPNAREVLIGLY+KTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRMISRPLLAKVKETTGIVGLDVVPNAREVLIGLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEA+DEL LIGKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKV 158
           ENDAP+PKH+P HRPGPLPEEFYKTLEA+S     KV
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLEALSKKDEPKV 157

[Close]

BLAST of Cucsa.108250 vs. TrEMBL
Match: A0A0D2QJJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G013400 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 7.4e-77
Identity = 141/157 (89.81%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR I RPLLAKVK+TTGIVGLDVVPNAREVLIGLY+KTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRMISRPLLAKVKETTGIVGLDVVPNAREVLIGLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEA+DEL LIGKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKV 158
           ENDAP+PKH+P HRPGPLPEEFYKTLEA+S     KV
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLEALSKKDEPKV 157

[Close]

BLAST of Cucsa.108250 vs. TAIR10
Match: AT5G52840.1 (AT5G52840.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 286.6 bits (732), Expect = 1.0e-77
Identity = 139/160 (86.88%), Postives = 146/160 (91.25%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPLLAKVKQTTGIVGLDVVPNAR VLI LYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TR RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LIGKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETP 161
           ENDAP+PKH+P HRPGPLPE+FYKTLE +  +S  K E P
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAES--KTEIP 158

[Close]

BLAST of Cucsa.108250 vs. TAIR10
Match: AT4G28005.1 (AT4G28005.1 BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT5G52840.1))

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-23
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1


Query: 65  LKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVIENDA 124
           ++VC EEEDW  IEKRL CG+VEELIEEA DEL L+GKMI              +I   A
Sbjct: 21  VEVCPEEEDWGVIEKRLACGKVEELIEEASDELTLVGKMI--------GSLHPNLIL--A 80

Query: 125 PVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKV 158
           P+PKH+P HRPGPLPEEFY+TL+A++ +S  ++
Sbjct: 81  PIPKHVPHHRPGPLPEEFYRTLQAVNSESKTEI 103

HSP 2 Score: 39.7 bits (91), Expect = 2.2e-03
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 1


Query: 1  MFLRAIGRPLLAKVKQTTGIV 22
          MF R IGRPLLAKVKQTTGIV
Sbjct: 1  MFQRVIGRPLLAKVKQTTGIV 21

[Close]

BLAST of Cucsa.108250 vs. NCBI nr
Match: gi|449445977|ref|XP_004140748.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 344.7 bits (883), Expect = 8.9e-92
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE 169
           ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE
Sbjct: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE 168

[Close]

BLAST of Cucsa.108250 vs. NCBI nr
Match: gi|659077626|ref|XP_008439300.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 337.8 bits (865), Expect = 1.1e-89
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE 169
           ENDAPVPKH+PLHRPGPLPEEFYKTLEAISGDST+KVET EKASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDSTRKVETTEKASQVTE 168

[Close]

BLAST of Cucsa.108250 vs. NCBI nr
Match: gi|700202292|gb|KGN57425.1| (hypothetical protein Csa_3G184070 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 1.7e-79
Identity = 151/168 (89.88%), Postives = 153/168 (91.07%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWENIEKRLGCGQ+  LIE             +WDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQLFSLIE-------------KWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE 169
           ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE
Sbjct: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE 155

[Close]

BLAST of Cucsa.108250 vs. NCBI nr
Match: gi|1009123008|ref|XP_015878313.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 296.2 bits (757), Expect = 3.6e-77
Identity = 143/168 (85.12%), Postives = 152/168 (90.48%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAI RPLLAKVKQTTGIVGLDVVPNAREVLIGLY+KTLKEIQAVPEDEGYRKAVE+F
Sbjct: 1   MFLRAIARPLLAKVKQTTGIVGLDVVPNAREVLIGLYNKTLKEIQAVPEDEGYRKAVENF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           T+HRLKVCQEEEDWE IEKRLGCGQVEELIEEA+DEL LIGKMIEW+PWGVPDDYECEVI
Sbjct: 61  TQHRLKVCQEEEDWEAIEKRLGCGQVEELIEEARDELTLIGKMIEWEPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE 169
           ENDAPVPKH+PLHRPGPLPEEFYKTLEA++  S +        SQ  E
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEALTSSSKEAPAVTSGESQSKE 168

[Close]

BLAST of Cucsa.108250 vs. NCBI nr
Match: gi|567218752|ref|XP_006413005.1| (hypothetical protein EUTSA_v10026409mg [Eutrema salsugineum])

HSP 1 Score: 295.0 bits (754), Expect = 8.1e-77
Identity = 143/164 (87.20%), Postives = 149/164 (90.85%), Query Frame = 1


Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAR VLI LYSKTLKEIQ VPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNARTVLIDLYSKTLKEIQVVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDEL L+GKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEAIEKRLGCGQVEELIEEAQDELTLVGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKAS 165
           ENDAP+PKH+P HRPGPLPEEFYKTL+AI+ +S  K E P   S
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLQAINSES--KTEIPAARS 162

The following BLAST results are available for this feature:

BLAST of Cucsa.108250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUA5_ARATH	1.8e-76	86.88	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
NDUA5_DICDI	5.0e-18	42.06	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyos...	[more]
NDUA5_BOVIN	3.9e-15	42.71	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus GN=ND...	[more]
NDUA5_MOUSE	1.3e-13	41.67	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus GN=...	[more]
NDUA5_MACFA	2.2e-13	40.63	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Macaca fascicula...	[more]

BLAST of Cucsa.108250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L623_CUCSA	1.2e-79	89.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G184070 PE=4 SV=1	[more]
A0A061G198_THECC	5.6e-77	88.20	NADH-ubiquinone oxidoreductase-related OS=Theobroma cacao GN=TCM_015272 PE=4 SV=...	[more]
V4MNG3_EUTSA	5.6e-77	87.20	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026409mg PE=4 SV=1	[more]
A0A0B0PIL0_GOSAR	7.4e-77	89.81	Uncharacterized protein OS=Gossypium arboreum GN=F383_06511 PE=4 SV=1	[more]
A0A0D2QJJ0_GOSRA	7.4e-77	89.81	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G013400 PE=4 SV=1	[more]

BLAST of Cucsa.108250 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52840.1	1.0e-77	86.88	NADH-ubiquinone oxidoreductase-related	[more]
AT4G28005.1	7.1e-23	55.91	BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidored...	[more]

BLAST of Cucsa.108250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445977\|ref\|XP_004140748.1\|	8.9e-92	100.00	PREDICTED: probable NADH dehydrogenase [ubiquinone]	[more]
gi\|659077626\|ref\|XP_008439300.1\|	1.1e-89	97.62	PREDICTED: probable NADH dehydrogenase [ubiquinone]	[more]
gi\|700202292\|gb\|KGN57425.1\|	1.7e-79	89.88	hypothetical protein Csa_3G184070 [Cucumis sativus]	[more]
gi\|1009123008\|ref\|XP_015878313.1\|	3.6e-77	85.12	PREDICTED: probable NADH dehydrogenase [ubiquinone]	[more]
gi\|567218752\|ref\|XP_006413005.1\|	8.1e-77	87.20	hypothetical protein EUTSA_v10026409mg [Eutrema salsugineum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006806	ETC_CI_29_9

Vocabulary: **Molecular Function**
Term	Definition
GO:0016651	oxidoreductase activity, acting on NAD(P)H

Vocabulary: **Cellular Component**
Term	Definition
GO:0005743	mitochondrial inner membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0022904	respiratory electron transport chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0022904	respiratory electron transport chain
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.108250.1	Cucsa.108250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006806	ETC complex I subunit	PFAM	PF04716	ETC_C1_NDUFA5	coord: 22..88 score: 2.2
None	No IPR available	PANTHER	PTHR12653	NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT	coord: 1..143 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.108250	Cla006136	Watermelon (97103) v1	cgywmB152
Cucsa.108250	Csa3G184070	Cucumber (Chinese Long) v2	cgycuB132
Cucsa.108250	MELO3C006949	Melon (DHL92) v3.5.1	cgymeB146
Cucsa.108250	ClCG05G008500	Watermelon (Charleston Gray)	cgywcgB152
Cucsa.108250	CSPI03G17390	Wild cucumber (PI 183967)	cgycpiB133
Cucsa.108250	CmaCh16G000910	Cucurbita maxima (Rimu)	cgycmaB0248
Cucsa.108250	CmaCh18G012780	Cucurbita maxima (Rimu)	cgycmaB0249
Cucsa.108250	CmoCh18G013090	Cucurbita moschata (Rifu)	cgycmoB0248
Cucsa.108250	CmoCh16G000960	Cucurbita moschata (Rifu)	cgycmoB0247
Cucsa.108250	Lsi05G011820	Bottle gourd (USVL1VR-Ls)	cgylsiB143
Cucsa.108250	Cp4.1LG09g00560	Cucurbita pepo (Zucchini)	cgycpeB0240
Cucsa.108250	Cp4.1LG14g06380	Cucurbita pepo (Zucchini)	cgycpeB0241
Cucsa.108250	MELO3C006949.2	Melon (DHL92) v3.6.1	cgymedB146
Cucsa.108250	CsaV3_3G017590	Cucumber (Chinese Long) v3	cgycucB137
Cucsa.108250	Cla97C05G090620	Watermelon (97103) v2	cgywmbB147
Cucsa.108250	Bhi01G001039	Wax gourd	cgywgoB169
Cucsa.108250	Carg22140	Silver-seed gourd	carcgyB0828
Cucsa.108250	Carg15100	Silver-seed gourd	carcgyB1105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.108250	Cucurbita maxima (Rimu)	cgycmaB0251
Cucsa.108250	Cucurbita moschata (Rifu)	cgycmoB0250
Cucsa.108250	Cucurbita pepo (Zucchini)	cgycpeB0244
Cucsa.108250	Silver-seed gourd	carcgyB0794