CmoCh16G000960 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G000960
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(NADH dehydrogenase (Ubiquinone)) (1.6.5.3)
LocationCmo_Chr16 : 442596 .. 444070 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGACTGGCTCGTCACGACTGAGAAGAGTGATCAAGAGAGAGGGAGAGGAGTTTTCCGACGATGTTTCTTCGAGCGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTTCCCAACGCCCGAGAGGTCTTGATCGGCCTTTACAGTAAAACCCTAAAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGTAAGGCGGTCGAGAGCTTCACGAACCACCGCTTGAAGGTTTGCCAGGAGGAAGAGGACTGGGAGAACATTGAAAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTAATCGAAGAGGCTCAGGACGAACTCAAGCTCATTGCTAAAATGATCGGTATGTGAACATTCACCAAAATTCTAAGCATATGAATTTGTAAAATTTTGATATGCAATCTACTTCCTTTTCATTTTCTCTTTCTGTTTGCTTCGATTTGGGAGCGAATTTTAAAATTGGACAAAAACAAGGCAGCAGGATTTATATGTTTGTCATTGCGTTGGAATGACAAAAGCCGAAGTTTTTTTCTAGTATTTTCATCATGTGGAGGATAAAAATTCGCGACTTCTCAAGTATTGAGAGTCAAGGAATGGCATTTGCATCATTTTGCACTGAAAAACTGGGCAATACCTGTAGGTTAAGGTGTATTTATCCTTCTTCCAGTTTACCTTTTTCTTAACTGGTCGAACGATGGGCCTTATGGGTAGTAGAAATCTTTGATTTCCTTTTCGTCTTAACATGAGATATTTTAGCTATGGAAATTGTCTAGATATATAATCATTTTATTGTAAGAGCATTATCTTTCATATCTTCAGTTACGAATCCCAGGTCCTTCACTGCTCTGTCTCCTTAGCTACCATTTAGGCAATTGGATTGCTATTTGACCCATTCACGTCACTGAACGTTCGAAATTCTCGTCTTTTGGTCTCTCTGCGGTGGATTGAAAACGTTAAAAGTTAGTCAAGCTGGAGTTATTGTCTAGCCAAGAAATTTGAATTTCTTCACTGATGACAGGTTTTTTTTTTTTTTTCTTGTCCCAATCTTAAAGGAGGTTTTCTTGTCCCAATTCACCGACACTTTTTGTGCTTGATTGAGAGTAATTACTAGTTTGCCTAACTTCTCTGGTCTTGCTGCATTTGGCGAACACTCAGAATTATTTCAGATATGGACCGTAATAGAATTCTATGAATCACCACAATTTGTTGGTGTTATCTTAGTGATTGATTAATTCACCTCAAATATGCAGAGTGGGATCCCTGGGGTGTTCCTGATGACTACGAATGCGAAGTAATCGAGAATGATGCTCCGGTACCCAAGCACGTTCCTCTGCACCGACCCGGTCCTCTCCCTGAAGAGTTTTACAAAACGCTGGAAGCCATTAGTGGTGATGGTGCACAAAAAGTAGACTCAGCCAAGAAAACATCTCAGGTGACAGAGTGA

mRNA sequence

GCGACTGGCTCGTCACGACTGAGAAGAGTGATCAAGAGAGAGGGAGAGGAGTTTTCCGACGATGTTTCTTCGAGCGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTTCCCAACGCCCGAGAGGTCTTGATCGGCCTTTACAGTAAAACCCTAAAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGTAAGGCGGTCGAGAGCTTCACGAACCACCGCTTGAAGGTTTGCCAGGAGGAAGAGGACTGGGAGAACATTGAAAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTAATCGAAGAGGCTCAGGACGAACTCAAGCTCATTGCTAAAATGATCGAGTGGGATCCCTGGGGTGTTCCTGATGACTACGAATGCGAAGTAATCGAGAATGATGCTCCGGTACCCAAGCACGTTCCTCTGCACCGACCCGGTCCTCTCCCTGAAGAGTTTTACAAAACGCTGGAAGCCATTAGTGGTGATGGTGCACAAAAAGTAGACTCAGCCAAGAAAACATCTCAGGTGACAGAGTGA

Coding sequence (CDS)

ATGTTTCTTCGAGCGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTTCCCAACGCCCGAGAGGTCTTGATCGGCCTTTACAGTAAAACCCTAAAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGTAAGGCGGTCGAGAGCTTCACGAACCACCGCTTGAAGGTTTGCCAGGAGGAAGAGGACTGGGAGAACATTGAAAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTAATCGAAGAGGCTCAGGACGAACTCAAGCTCATTGCTAAAATGATCGAGTGGGATCCCTGGGGTGTTCCTGATGACTACGAATGCGAAGTAATCGAGAATGATGCTCCGGTACCCAAGCACGTTCCTCTGCACCGACCCGGTCCTCTCCCTGAAGAGTTTTACAAAACGCTGGAAGCCATTAGTGGTGATGGTGCACAAAAAGTAGACTCAGCCAAGAAAACATCTCAGGTGACAGAGTGA
Homology
[Close]
BLAST of CmoCh16G000960 vs. Swiss-Prot
Match: NDUA5_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840 PE=1 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 9.8e-75
Identity = 135/160 (84.38%), Postives = 144/160 (90.00%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPLLAKVKQTTGIVGLDVVPNAR VLI LYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T  RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSA 161
           ENDAP+PKHVP HRPGPLPE+FYKTLE +  +   ++ +A
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAA 160

[Close]
BLAST of CmoCh16G000960 vs. Swiss-Prot
Match: NDUA5_DICDI (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyostelium discoideum GN=ndufa5 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17
Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = 1 

Query: 14  VKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESFTNHRLKVCQEEED 73
           +K++TGI GL V PNAR +L GLY++ LK+++ +P   GYRK+ E  T  RL V + E D
Sbjct: 6   IKKSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETD 65

Query: 74  WENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 121
              IE ++  GQ+EELI +A+++LK++  + E   W +PD  +  V+
Sbjct: 66  IVKIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPDKNKPPVV 112

[Close]
BLAST of CmoCh16G000960 vs. Swiss-Prot
Match: NDUA5_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus GN=NDUFA5 PE=1 SV=3)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-15
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1 

Query: 14  VKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESFTNHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY+K L  +  +P++  YRK  E  TN +L + + E D
Sbjct: 5   LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPD 64

Query: 74  WENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            + +E+RL  GQ+EE+I +A++EL L  KMI+W PW
Sbjct: 65  VKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 100

[Close]
BLAST of CmoCh16G000960 vs. Swiss-Prot
Match: NDUA5_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus GN=Ndufa5 PE=1 SV=3)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-14
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 

Query: 14  VKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESFTNHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY+KTL  ++  P+   YRK  E  TN +L + + E D
Sbjct: 5   LKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPD 64

Query: 74  WENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            + +E  L  G+VEE+I +A+ EL L  KM++W PW
Sbjct: 65  VKKLEALLQGGEVEEVILQAEKELSLARKMLKWKPW 100

[Close]
BLAST of CmoCh16G000960 vs. Swiss-Prot
Match: NDUA5_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Macaca fascicularis GN=NDUFA5 PE=3 SV=3)

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-14
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1 

Query: 14  VKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESFTNHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY+K L  +  +P++  YRK  E  TN +L + + E D
Sbjct: 5   LKKTTGLVGLAVCSTPHERLSILYTKILDVLAEIPKNAAYRKYTEQITNEKLAMVKAEPD 64

Query: 74  WENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            + +E +L  GQ+EE+I +A+ EL L  KM +W PW
Sbjct: 65  VKKLEDQLQGGQLEEVILQAEHELSLARKMRDWKPW 100

[Close]
BLAST of CmoCh16G000960 vs. TrEMBL
Match: B9RIR5_RICCO (NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_1581930 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.7e-76
Identity = 141/161 (87.58%), Postives = 147/161 (91.30%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR I RPL+A+VKQTTGIVGLDVVPNAREVLI LY+KTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIARPLMARVKQTTGIVGLDVVPNAREVLISLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEEEDWE IEK+LGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TKHRLKVCQEEEDWEMIEKKLGCGQVEELIEEAQDELKLIEKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSAK 162
           ENDAPVPKHVPLHRPGPLPEEFYKTLEA+    A  V S +
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAVQSKDAPAVTSGQ 161

[Close]
BLAST of CmoCh16G000960 vs. TrEMBL
Match: A0A061G198_THECC (NADH-ubiquinone oxidoreductase-related OS=Theobroma cacao GN=TCM_015272 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 8.1e-76
Identity = 142/161 (88.20%), Postives = 148/161 (91.93%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR I RPLLAKVK+TTGIVGLDVVPNAREVLIGLY+KTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRLISRPLLAKVKETTGIVGLDVVPNAREVLIGLYTKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEE DWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEGDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSAK 162
           ENDAPVPKHVPLHRPGPLPEEFY+TLEA+S   A KV S +
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYQTLEAVSKKDAPKVTSGE 161

[Close]
BLAST of CmoCh16G000960 vs. TrEMBL
Match: M5XKY7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012419mg PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 8.1e-76
Identity = 144/164 (87.80%), Postives = 152/164 (92.68%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPL+AKVKQTTGIVGLDVVPNAREVLI LYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLMAKVKQTTGIVGLDVVPNAREVLIELYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T  RLKVC+EEEDWE IEK+LGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLKVCREEEDWEAIEKKLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSAKKTS 165
           ENDAPVPKHVPLHRPGPLPEEFYKTLE ++ + A K+D AK TS
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEGLTTNQA-KLDEAKATS 163

[Close]
BLAST of CmoCh16G000960 vs. TrEMBL
Match: A0A0B0PIL0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_06511 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-75
Identity = 141/159 (88.68%), Postives = 146/159 (91.82%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR I RPLLAKVK+TTGIVGLDVVPNAREVLIGLY+KTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRMISRPLLAKVKETTGIVGLDVVPNAREVLIGLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDS 160
           ENDAP+PKHVP HRPGPLPEEFYKTLEA+S     KV S
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLEALSKKDEPKVTS 159

[Close]
BLAST of CmoCh16G000960 vs. TrEMBL
Match: A0A0D2QJJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G013400 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-75
Identity = 141/159 (88.68%), Postives = 146/159 (91.82%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR I RPLLAKVK+TTGIVGLDVVPNAREVLIGLY+KTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRMISRPLLAKVKETTGIVGLDVVPNAREVLIGLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDS 160
           ENDAP+PKHVP HRPGPLPEEFYKTLEA+S     KV S
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLEALSKKDEPKVTS 159

[Close]
BLAST of CmoCh16G000960 vs. TAIR10
Match: AT5G52840.1 (AT5G52840.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 280.8 bits (717), Expect = 5.5e-76
Identity = 135/160 (84.38%), Postives = 144/160 (90.00%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPLLAKVKQTTGIVGLDVVPNAR VLI LYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T  RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSA 161
           ENDAP+PKHVP HRPGPLPE+FYKTLE +  +   ++ +A
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAA 160

[Close]
BLAST of CmoCh16G000960 vs. TAIR10
Match: AT4G28005.1 (AT4G28005.1 BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT5G52840.1))

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-21
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 65  LKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVIENDA 124
           ++VC EEEDW  IEKRL CG+VEELIEEA DEL L+ KMI              +I   A
Sbjct: 21  VEVCPEEEDWGVIEKRLACGKVEELIEEASDELTLVGKMI--------GSLHPNLIL--A 80

Query: 125 PVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSAKKT 164
           P+PKHVP HRPGPLPEEFY+TL+A++ +   ++ +   +
Sbjct: 81  PIPKHVPHHRPGPLPEEFYRTLQAVNSESKTEITATSSS 109

[Close]
BLAST of CmoCh16G000960 vs. NCBI nr
Match: gi|659077626|ref|XP_008439300.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 326.2 bits (835), Expect = 3.3e-86
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSAKKTSQVTE 169
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGD  +KV++ +K SQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDSTRKVETTEKASQVTE 168

[Close]
BLAST of CmoCh16G000960 vs. NCBI nr
Match: gi|449445977|ref|XP_004140748.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-85
Identity = 157/168 (93.45%), Postives = 162/168 (96.43%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSAKKTSQVTE 169
           ENDAPVPKH+PLHRPGPLPEEFYKTLEAISGD  +KV++ +K SQVTE
Sbjct: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAISGDSTKKVETPEKASQVTE 168

[Close]
BLAST of CmoCh16G000960 vs. NCBI nr
Match: gi|255545146|ref|XP_002513634.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 292.0 bits (746), Expect = 6.8e-76
Identity = 141/161 (87.58%), Postives = 147/161 (91.30%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR I RPL+A+VKQTTGIVGLDVVPNAREVLI LY+KTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIARPLMARVKQTTGIVGLDVVPNAREVLISLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEEEDWE IEK+LGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TKHRLKVCQEEEDWEMIEKKLGCGQVEELIEEAQDELKLIEKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSAK 162
           ENDAPVPKHVPLHRPGPLPEEFYKTLEA+    A  V S +
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAVQSKDAPAVTSGQ 161

[Close]
BLAST of CmoCh16G000960 vs. NCBI nr
Match: gi|590673291|ref|XP_007038850.1| (NADH-ubiquinone oxidoreductase-related [Theobroma cacao])

HSP 1 Score: 291.2 bits (744), Expect = 1.2e-75
Identity = 142/161 (88.20%), Postives = 148/161 (91.93%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLR I RPLLAKVK+TTGIVGLDVVPNAREVLIGLY+KTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRLISRPLLAKVKETTGIVGLDVVPNAREVLIGLYTKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEE DWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEGDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSAK 162
           ENDAPVPKHVPLHRPGPLPEEFY+TLEA+S   A KV S +
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYQTLEAVSKKDAPKVTSGE 161

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BLAST of CmoCh16G000960 vs. NCBI nr
Match: gi|596008923|ref|XP_007218506.1| (hypothetical protein PRUPE_ppa012419mg [Prunus persica])

HSP 1 Score: 291.2 bits (744), Expect = 1.2e-75
Identity = 144/164 (87.80%), Postives = 152/164 (92.68%), Query Frame = 1 

Query: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60
           MFLRAIGRPL+AKVKQTTGIVGLDVVPNAREVLI LYSKTLKEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLMAKVKQTTGIVGLDVVPNAREVLIELYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TNHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T  RLKVC+EEEDWE IEK+LGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLKVCREEEDWEAIEKKLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSAKKTS 165
           ENDAPVPKHVPLHRPGPLPEEFYKTLE ++ + A K+D AK TS
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEGLTTNQA-KLDEAKATS 163

The following BLAST results are available for this feature:
BLAST of CmoCh16G000960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUA5_ARATH9.8e-7584.38Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond... [more]
NDUA5_DICDI1.4e-1742.06Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyos... [more]
NDUA5_BOVIN1.0e-1543.75NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus GN=ND... [more]
NDUA5_MOUSE3.3e-1442.71NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus GN=... [more]
NDUA5_MACFA5.7e-1441.67NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Macaca fascicula... [more]
BLAST of CmoCh16G000960 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RIR5_RICCO4.7e-7687.58NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_1581930 PE=4 SV=1[more]
A0A061G198_THECC8.1e-7688.20NADH-ubiquinone oxidoreductase-related OS=Theobroma cacao GN=TCM_015272 PE=4 SV=... [more]
M5XKY7_PRUPE8.1e-7687.80Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012419mg PE=4 SV=1[more]
A0A0B0PIL0_GOSAR1.4e-7588.68Uncharacterized protein OS=Gossypium arboreum GN=F383_06511 PE=4 SV=1[more]
A0A0D2QJJ0_GOSRA1.4e-7588.68Uncharacterized protein OS=Gossypium raimondii GN=B456_007G013400 PE=4 SV=1[more]
BLAST of CmoCh16G000960 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52840.15.5e-7684.38 NADH-ubiquinone oxidoreductase-related[more]
AT4G28005.12.3e-2151.52 BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidored... [more]
BLAST of CmoCh16G000960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077626|ref|XP_008439300.1|3.3e-8694.64PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|449445977|ref|XP_004140748.1|1.6e-8593.45PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|255545146|ref|XP_002513634.1|6.8e-7687.58PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|590673291|ref|XP_007038850.1|1.2e-7588.20NADH-ubiquinone oxidoreductase-related [Theobroma cacao][more]
gi|596008923|ref|XP_007218506.1|1.2e-7587.80hypothetical protein PRUPE_ppa012419mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006806ETC_CI_29_9
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
Vocabulary: Biological Process
TermDefinition
GO:0022904respiratory electron transport chain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G000960.1CmoCh16G000960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006806ETC complex I subunitPFAMPF04716ETC_C1_NDUFA5coord: 22..88
score: 1.9
NoneNo IPR availablePANTHERPTHR12653NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNITcoord: 1..143
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G000960Cucsa.108250Cucumber (Gy14) v1cgycmoB0247
CmoCh16G000960CmaCh18G012780Cucurbita maxima (Rimu)cmacmoB405
CmoCh16G000960Cla006136Watermelon (97103) v1cmowmB310
CmoCh16G000960Csa3G184070Cucumber (Chinese Long) v2cmocuB317
CmoCh16G000960MELO3C006949Melon (DHL92) v3.5.1cmomeB287
CmoCh16G000960ClCG05G008500Watermelon (Charleston Gray)cmowcgB290
CmoCh16G000960CSPI03G17390Wild cucumber (PI 183967)cmocpiB325
CmoCh16G000960Lsi05G011820Bottle gourd (USVL1VR-Ls)cmolsiB300
CmoCh16G000960Cp4.1LG09g00560Cucurbita pepo (Zucchini)cmocpeB303
CmoCh16G000960MELO3C006949.2Melon (DHL92) v3.6.1cmomedB326
CmoCh16G000960CsaV3_3G017590Cucumber (Chinese Long) v3cmocucB0379
CmoCh16G000960Cla97C05G090620Watermelon (97103) v2cmowmbB331
CmoCh16G000960Bhi01G001039Wax gourdcmowgoB0435
CmoCh16G000960CsGy3G017440Cucumber (Gy14) v2cgybcmoB312
CmoCh16G000960Carg15100Silver-seed gourdcarcmoB1326
CmoCh16G000960Carg22140Silver-seed gourdcarcmoB1002
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G000960CmoCh18G013090Cucurbita moschata (Rifu)cmocmoB275
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G000960Cucurbita moschata (Rifu)cmocmoB194
CmoCh16G000960Cucurbita moschata (Rifu)cmocmoB236
CmoCh16G000960Cucurbita moschata (Rifu)cmocmoB281
CmoCh16G000960Cucurbita moschata (Rifu)cmocmoB297
CmoCh16G000960Cucurbita maxima (Rimu)cmacmoB289
CmoCh16G000960Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G000960Cucurbita maxima (Rimu)cmacmoB587
CmoCh16G000960Cucurbita maxima (Rimu)cmacmoB886
CmoCh16G000960Wild cucumber (PI 183967)cmocpiB337
CmoCh16G000960Cucumber (Chinese Long) v2cmocuB329
CmoCh16G000960Melon (DHL92) v3.5.1cmomeB275
CmoCh16G000960Melon (DHL92) v3.5.1cmomeB289
CmoCh16G000960Watermelon (Charleston Gray)cmowcgB282
CmoCh16G000960Watermelon (97103) v1cmowmB312
CmoCh16G000960Cucurbita pepo (Zucchini)cmocpeB306
CmoCh16G000960Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G000960Cucurbita pepo (Zucchini)cmocpeB322
CmoCh16G000960Bottle gourd (USVL1VR-Ls)cmolsiB286
CmoCh16G000960Bottle gourd (USVL1VR-Ls)cmolsiB308
CmoCh16G000960Cucumber (Gy14) v2cgybcmoB307
CmoCh16G000960Cucumber (Gy14) v2cgybcmoB594
CmoCh16G000960Melon (DHL92) v3.6.1cmomedB312
CmoCh16G000960Melon (DHL92) v3.6.1cmomedB327
CmoCh16G000960Melon (DHL92) v3.6.1cmomedB331
CmoCh16G000960Silver-seed gourdcarcmoB0966
CmoCh16G000960Cucumber (Chinese Long) v3cmocucB0374
CmoCh16G000960Cucumber (Chinese Long) v3cmocucB0394
CmoCh16G000960Cucumber (Chinese Long) v3cmocucB0398
CmoCh16G000960Watermelon (97103) v2cmowmbB307
CmoCh16G000960Watermelon (97103) v2cmowmbB328