CmoCh18G013090 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G013090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(NADH dehydrogenase (Ubiquinone)) (1.6.5.3)
LocationCmo_Chr18 : 12519713 .. 12522157 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTCTCCCAAAGCGCCTAGCTCGTCACGACTCACAGAGTGATCGACAGAGAGACATAGGAGTTTTCCGACGATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATCGGTATGTATATAATTTTCTGCAACCAAAGTTCTATTTTTTACATATTTGTGAAATTTTGATGACAGTCTATTTCCGTTTCATTTCCTTGTCCTATCTGTTTCGTTATGGGAAGGGAATGTATGAATTGGGGATGGAAAATGGCAGGATTTTCGAGTTATGTGATATTTCTATAATTGCATTGCGTGGAAATGATGGAAACCGAACCTTTCGTACTCAAATTATGAGTTTGGCATCGGTAATGAGACCTTGCAGGCATGTTTTAAATACAAAAGATCCCTATATAAGAGAAAGATTATGGGTATATGAAATCTTTTTGGGTAGACGAAAAGCAAAGTTGTTGTTAGTATTTATGTTCAAAGTGGACGATATCATGTCATTGTGGAGATAGATAGAGGTCGTATGATCCCAAATAGCTGGTATTAGAGTCATGTCCCGAACTTAGCCGTGTTAGTAAAATCCTTGAGTTCCAAATGTAAATGTAGTTAGTCATGAATCCGTGGTTGAGCTTTTGGATAGGTAGTGTGTGCTGTGAGGAGTAAACCTAATTAAAAAGTAATATGTAAAAGTGTAGTTTGAAGGTACGACTATGTGAGGGTAGACTCGAGATGATACTTTGTGCTAGAGGAGGATTGTTTGCGTTAACTAGATAAGAATAAATCCTATAACCGGAGGATTGTTGGCACTACCTAGATAAGAAAAAAAATCATGGGTTATATGAGTGAGAACAATCGTCTCCATTGGTATAAGACTCTTTTAGAGAAAGCAAAAGCAAAAGCAAAATCACGAGTGTTTATGCTCGAAGTGGACAATAACATACCATTACAGGGAAGATCATTGAAAATACAAACAAAGTCCCACATTGACCTTATAAAGAAAAAGTCATAGGTAGATGAGTGAGGACAACCTTCTCCAATAAAAATGAGGCCTTTGAGAGAAAATCAAAACAAAGCCACAAAGGTTTATGCCGAAAGTGAAGATTATCATACTATTGTGGAGATAGGTCGTTGAATGTCAAATAATGGCATTTGCATCTTGTTGTACTGACAAAGCTGTGTTAACACCTATGAATTAGACTGTACATATCCTTTTGTCATTGCTAGCTTCTGGCCTAATAGCAATCCCTGATTTCTGTTATAACCTGAGGATTGTGAAAATTGCATGTGTGAAGCAATATGCCCGACTTCTCTGGTCTTAGCTGCATTGGCGCACATTCATTATTTCATAGACGGAGCCAATATTTTAAATGTCGATGTTCACGAAAACGTCAAGATCTCAATTTTATGAAAATTTCAATGAAAATACCGAGAAAATGCGAGCTTCCCCTTTGCTCTATAGAAATGGATGGAAATGCCTACTACTCATTCCCATTCAATAGGTTCACAATCAGGGGCTGAAAACCAGTGTCGATGAATATTTATTTAGAACCGGTCATCACAATCTGTTTGTAGTTTTCTTAGTCACAAGTTACTTGAAATATGCAGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCGAAGCATGTTCCTCTTCACCGACCAGGCCCTCTCCCTGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTGCACAGAAAGTAGAGACGGCCGACAAAGCGTCTCAGGTGACAGAATGATTCTTCTTCACCATTTGGAGATTTCAAGTTTCAGAATCGAAAGCTGTTATTTATCCAATTATGTTTGTTCTTCAATAGGAATGATTGTTCGCAAAGTCGTGTACTTCAATAATAATCCTTACCCGACTCTGGAATGACATCAATTTACCCTTTCTTTGTCTGGTTTAAATTTTACTGTGCACACCAGCCCAGTCACTTCTGGACTGGTTTTGAGAATCAGCAATTTTAATCTTTTATTCCATAGATTGGAGAATAATTACTAAATTTTTGGATTTGTTTCTGATTGGTCTATCAACTTTGATGGATGTATCTTTTTGGTCTCGGACTTGTAAGACAATAAATTGAAGATTCAAGAACTTATTAGACACGAATATGAAGCTTA

mRNA sequence

CGTTCTCCCAAAGCGCCTAGCTCGTCACGACTCACAGAGTGATCGACAGAGAGACATAGGAGTTTTCCGACGATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATCGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCGAAGCATGTTCCTCTTCACCGACCAGGCCCTCTCCCTGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTGCACAGAAAGTAGAGACGGCCGACAAAGCGTCTCAGGTGACAGAATGATTCTTCTTCACCATTTGGAGATTTCAAGTTTCAGAATCGAAAGCTGTTATTTATCCAATTATGTTTGTTCTTCAATAGGAATGATTGTTCGCAAAGTCGTGTACTTCAATAATAATCCTTACCCGACTCTGGAATGACATCAATTTACCCTTTCTTTGTCTGGTTTAAATTTTACTGTGCACACCAGCCCAGTCACTTCTGGACTGGTTTTGAGAATCAGCAATTTTAATCTTTTATTCCATAGATTGGAGAATAATTACTAAATTTTTGGATTTGTTTCTGATTGGTCTATCAACTTTGATGGATGTATCTTTTTGGTCTCGGACTTGTAAGACAATAAATTGAAGATTCAAGAACTTATTAGACACGAATATGAAGCTTA

Coding sequence (CDS)

ATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATCGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCGAAGCATGTTCCTCTTCACCGACCAGGCCCTCTCCCTGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTGCACAGAAAGTAGAGACGGCCGACAAAGCGTCTCAGGTGACAGAATGA
Homology
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BLAST of CmoCh18G013090 vs. Swiss-Prot
Match: NDUA5_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840 PE=1 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.2e-73
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAR VLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TR RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI 150
           ENDAP+PKHVP HRPGPLPE+FYKTLE +
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGL 149

[Close]
BLAST of CmoCh18G013090 vs. Swiss-Prot
Match: NDUA5_DICDI (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyostelium discoideum GN=ndufa5 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-17
Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 1 

Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K++TGI GL V PNAR +L GLY + L++++ +P   GYRK+ E  T+ RL V + E D
Sbjct: 6   IKKSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETD 65

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 121
             +IE ++  GQ+EELI +A+++LK++  + E   W +PD  +  V+
Sbjct: 66  IVKIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPDKNKPPVV 112

[Close]
BLAST of CmoCh18G013090 vs. Swiss-Prot
Match: NDUA5_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus GN=NDUFA5 PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 1 

Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY K L  +  +P++  YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            +++E+RL  GQ+EE+I +A++EL L  KMI+W PW
Sbjct: 65  VKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 100

[Close]
BLAST of CmoCh18G013090 vs. Swiss-Prot
Match: NDUA5_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus GN=Ndufa5 PE=1 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-13
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1 

Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY KTL  ++  P+   YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            +++E  L  G+VEE+I +A+ EL L  KM++W PW
Sbjct: 65  VKKLEALLQGGEVEEVILQAEKELSLARKMLKWKPW 100

[Close]
BLAST of CmoCh18G013090 vs. Swiss-Prot
Match: NDUA5_CAEEL (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Caenorhabditis elegans GN=C33A12.1 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-13
Identity = 35/95 (36.84%), Postives = 60/95 (63.16%), Query Frame = 1 

Query: 15  KQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEEDW 74
           K+TTGI GL V  +    L  +YG+ L+ ++ +P D  YRK  E+  + RL + Q E D 
Sbjct: 40  KKTTGITGLFVNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDI 99

Query: 75  EQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
           +++E+++G GQ+EE+IE+A+ EL+    +++   W
Sbjct: 100 KKLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAW 134

[Close]
BLAST of CmoCh18G013090 vs. TrEMBL
Match: B9RIR5_RICCO (NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_1581930 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-75
Identity = 139/151 (92.05%), Postives = 145/151 (96.03%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVI RPL+A+VKQTTGIVGLDVVPNAREVLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIARPLMARVKQTTGIVGLDVVPNAREVLISLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T+HRLKVCQEEEDWE IEK+LGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TKHRLKVCQEEEDWEMIEKKLGCGQVEELIEEAQDELKLIEKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISS 152
           ENDAPVPKHVPLHRPGPLPEEFYKTLEA+ S
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAVQS 151

[Close]
BLAST of CmoCh18G013090 vs. TrEMBL
Match: A0A059DJN4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02717 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 4.0e-75
Identity = 141/166 (84.94%), Postives = 148/166 (89.16%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPL+AKVKQTTGIVGLDVVPNAREVLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLMAKVKQTTGIVGLDVVPNAREVLIELYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVC+EEEDWE IEKRLGCGQVEEL+EEA+DEL LI+KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCREEEDWEAIEKRLGCGQVEELVEEARDELTLISKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQ 167
           ENDAP+PKHVP HRPGPLPEEFYKTLE IS G    K E     SQ
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLETISIGQKESKPEVTSGESQ 166

[Close]
BLAST of CmoCh18G013090 vs. TrEMBL
Match: A0A0D2QJJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G013400 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.3e-75
Identity = 138/150 (92.00%), Postives = 144/150 (96.00%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR+I RPLLAKVK+TTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRMISRPLLAKVKETTGIVGLDVVPNAREVLIGLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAIS 151
           ENDAP+PKHVP HRPGPLPEEFYKTLEA+S
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLEALS 150

[Close]
BLAST of CmoCh18G013090 vs. TrEMBL
Match: A0A0B0PIL0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_06511 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.3e-75
Identity = 138/150 (92.00%), Postives = 144/150 (96.00%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR+I RPLLAKVK+TTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRMISRPLLAKVKETTGIVGLDVVPNAREVLIGLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAIS 151
           ENDAP+PKHVP HRPGPLPEEFYKTLEA+S
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLEALS 150

[Close]
BLAST of CmoCh18G013090 vs. TrEMBL
Match: V4U7Q5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006072mg PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.0e-74
Identity = 138/150 (92.00%), Postives = 143/150 (95.33%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPL+AKVKQTTGI GLDVVPNAREVLI LY KTL+EIQAVP DEGYRKAVESF
Sbjct: 1   MFLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TR RLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAIS 151
           ENDAPVPKHVPLHRPGPLPEEF+KTLEA++
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFHKTLEAVT 150

[Close]
BLAST of CmoCh18G013090 vs. TAIR10
Match: AT5G52840.1 (AT5G52840.1 NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 275.8 bits (704), Expect = 1.8e-74
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAR VLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TR RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI 150
           ENDAP+PKHVP HRPGPLPE+FYKTLE +
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGL 149

[Close]
BLAST of CmoCh18G013090 vs. TAIR10
Match: AT4G28005.1 (AT4G28005.1 BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT5G52840.1))

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-21
Identity = 55/105 (52.38%), Postives = 68/105 (64.76%), Query Frame = 1 

Query: 65  LKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVIENDA 124
           ++VC EEEDW  IEKRL CG+VEELIEEA DEL L+ KMI              +I   A
Sbjct: 21  VEVCPEEEDWGVIEKRLACGKVEELIEEASDELTLVGKMI--------GSLHPNLIL--A 80

Query: 125 PVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 170
           P+PKHVP HRPGPLPEEFY+TL+A++S    +   T+    Q+ E
Sbjct: 81  PIPKHVPHHRPGPLPEEFYRTLQAVNSESKTEITATSSSDPQLKE 115

[Close]
BLAST of CmoCh18G013090 vs. NCBI nr
Match: gi|659077626|ref|XP_008439300.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-83
Identity = 159/169 (94.08%), Postives = 162/169 (95.86%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 170
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAI SG S +KVET +KASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI-SGDSTRKVETTEKASQVTE 168

[Close]
BLAST of CmoCh18G013090 vs. NCBI nr
Match: gi|449445977|ref|XP_004140748.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 315.5 bits (807), Expect = 5.8e-83
Identity = 157/169 (92.90%), Postives = 161/169 (95.27%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 170
           ENDAPVPKH+PLHRPGPLPEEFYKTLEAI SG S +KVET +KASQVTE
Sbjct: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAI-SGDSTKKVETPEKASQVTE 168

[Close]
BLAST of CmoCh18G013090 vs. NCBI nr
Match: gi|255545146|ref|XP_002513634.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 290.4 bits (742), Expect = 2.0e-75
Identity = 139/151 (92.05%), Postives = 145/151 (96.03%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVI RPL+A+VKQTTGIVGLDVVPNAREVLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIARPLMARVKQTTGIVGLDVVPNAREVLISLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T+HRLKVCQEEEDWE IEK+LGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TKHRLKVCQEEEDWEMIEKKLGCGQVEELIEEAQDELKLIEKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISS 152
           ENDAPVPKHVPLHRPGPLPEEFYKTLEA+ S
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAVQS 151

[Close]
BLAST of CmoCh18G013090 vs. NCBI nr
Match: gi|802768729|ref|XP_012090165.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 289.3 bits (739), Expect = 4.4e-75
Identity = 141/166 (84.94%), Postives = 150/166 (90.36%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVI RPL+AKVKQTTGIVGLDVVPNAREVLI LY KTL+EI+AVPEDEGYRKAVESF
Sbjct: 1   MFLRVIARPLMAKVKQTTGIVGLDVVPNAREVLINLYNKTLKEIKAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRL+VCQEEEDWE IEK+LGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLQVCQEEEDWEMIEKKLGCGQVEELIEEAQDELKLIEKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQ 167
           ENDAPVPKHVPLHRPGPLPEEFYKTLEA+ S   A  V +    ++
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAVQSKTDAPAVTSGQSETK 166

[Close]
BLAST of CmoCh18G013090 vs. NCBI nr
Match: gi|702249872|ref|XP_010060246.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 288.9 bits (738), Expect = 5.8e-75
Identity = 141/166 (84.94%), Postives = 148/166 (89.16%), Query Frame = 1 

Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPL+AKVKQTTGIVGLDVVPNAREVLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLMAKVKQTTGIVGLDVVPNAREVLIELYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVC+EEEDWE IEKRLGCGQVEEL+EEA+DEL LI+KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCREEEDWEAIEKRLGCGQVEELVEEARDELTLISKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQ 167
           ENDAP+PKHVP HRPGPLPEEFYKTLE IS G    K E     SQ
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLETISIGQKESKPEVTSGESQ 166

The following BLAST results are available for this feature:
BLAST of CmoCh18G013090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUA5_ARATH3.2e-7388.59Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond... [more]
NDUA5_DICDI5.5e-1741.12Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyos... [more]
NDUA5_BOVIN1.5e-1442.71NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus GN=ND... [more]
NDUA5_MOUSE4.8e-1341.67NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus GN=... [more]
NDUA5_CAEEL6.3e-1336.84Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Caenorh... [more]
BLAST of CmoCh18G013090 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RIR5_RICCO1.4e-7592.05NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_1581930 PE=4 SV=1[more]
A0A059DJN4_EUCGR4.0e-7584.94Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02717 PE=4 SV=1[more]
A0A0D2QJJ0_GOSRA5.3e-7592.00Uncharacterized protein OS=Gossypium raimondii GN=B456_007G013400 PE=4 SV=1[more]
A0A0B0PIL0_GOSAR5.3e-7592.00Uncharacterized protein OS=Gossypium arboreum GN=F383_06511 PE=4 SV=1[more]
V4U7Q5_9ROSI2.0e-7492.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006072mg PE=4 SV=1[more]
BLAST of CmoCh18G013090 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52840.11.8e-7488.59 NADH-ubiquinone oxidoreductase-related[more]
AT4G28005.11.0e-2152.38 BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidored... [more]
BLAST of CmoCh18G013090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077626|ref|XP_008439300.1|1.2e-8394.08PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|449445977|ref|XP_004140748.1|5.8e-8392.90PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|255545146|ref|XP_002513634.1|2.0e-7592.05PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|802768729|ref|XP_012090165.1|4.4e-7584.94PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|702249872|ref|XP_010060246.1|5.8e-7584.94PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006806ETC_CI_29_9
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
Vocabulary: Biological Process
TermDefinition
GO:0022904respiratory electron transport chain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G013090.1CmoCh18G013090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006806ETC complex I subunitPFAMPF04716ETC_C1_NDUFA5coord: 22..88
score: 3.6
NoneNo IPR availablePANTHERPTHR12653NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNITcoord: 1..143
score: 8.6
NoneNo IPR availablePANTHERPTHR12653:SF0NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 5coord: 1..143
score: 8.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh18G013090Cucsa.108250Cucumber (Gy14) v1cgycmoB0248
CmoCh18G013090CmaCh16G000910Cucurbita maxima (Rimu)cmacmoB327
CmoCh18G013090CmaCh18G012780Cucurbita maxima (Rimu)cmacmoB406
CmoCh18G013090Cla006136Watermelon (97103) v1cmowmB366
CmoCh18G013090Csa3G184070Cucumber (Chinese Long) v2cmocuB398
CmoCh18G013090MELO3C006949Melon (DHL92) v3.5.1cmomeB372
CmoCh18G013090ClCG05G008500Watermelon (Charleston Gray)cmowcgB359
CmoCh18G013090CSPI03G17390Wild cucumber (PI 183967)cmocpiB401
CmoCh18G013090Lsi05G011820Bottle gourd (USVL1VR-Ls)cmolsiB372
CmoCh18G013090Cp4.1LG09g00560Cucurbita pepo (Zucchini)cmocpeB376
CmoCh18G013090Cp4.1LG14g06380Cucurbita pepo (Zucchini)cmocpeB386
CmoCh18G013090MELO3C006949.2Melon (DHL92) v3.6.1cmomedB426
CmoCh18G013090CsaV3_3G017590Cucumber (Chinese Long) v3cmocucB0476
CmoCh18G013090Cla97C05G090620Watermelon (97103) v2cmowmbB404
CmoCh18G013090Bhi01G001039Wax gourdcmowgoB0504
CmoCh18G013090CsGy3G017440Cucumber (Gy14) v2cgybcmoB324
CmoCh18G013090Carg15100Silver-seed gourdcarcmoB1328
CmoCh18G013090Carg22140Silver-seed gourdcarcmoB1003
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh18G013090CmoCh16G000960Cucurbita moschata (Rifu)cmocmoB275
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G013090Watermelon (97103) v2cmowmbB385
CmoCh18G013090Watermelon (97103) v2cmowmbB410
CmoCh18G013090Cucurbita moschata (Rifu)cmocmoB201
CmoCh18G013090Cucurbita moschata (Rifu)cmocmoB243
CmoCh18G013090Cucurbita moschata (Rifu)cmocmoB333
CmoCh18G013090Cucurbita maxima (Rimu)cmacmoB255
CmoCh18G013090Cucurbita maxima (Rimu)cmacmoB292
CmoCh18G013090Cucurbita maxima (Rimu)cmacmoB591
CmoCh18G013090Wild cucumber (PI 183967)cmocpiB414
CmoCh18G013090Cucumber (Chinese Long) v2cmocuB409
CmoCh18G013090Melon (DHL92) v3.5.1cmomeB341
CmoCh18G013090Melon (DHL92) v3.5.1cmomeB368
CmoCh18G013090Watermelon (Charleston Gray)cmowcgB344
CmoCh18G013090Watermelon (Charleston Gray)cmowcgB363
CmoCh18G013090Watermelon (97103) v1cmowmB370
CmoCh18G013090Watermelon (97103) v1cmowmB380
CmoCh18G013090Cucurbita pepo (Zucchini)cmocpeB384
CmoCh18G013090Cucurbita pepo (Zucchini)cmocpeB414
CmoCh18G013090Bottle gourd (USVL1VR-Ls)cmolsiB351
CmoCh18G013090Bottle gourd (USVL1VR-Ls)cmolsiB371
CmoCh18G013090Cucumber (Gy14) v2cgybcmoB606
CmoCh18G013090Cucumber (Gy14) v2cgybcmoB607
CmoCh18G013090Melon (DHL92) v3.6.1cmomedB390
CmoCh18G013090Melon (DHL92) v3.6.1cmomedB424
CmoCh18G013090Melon (DHL92) v3.6.1cmomedB421
CmoCh18G013090Silver-seed gourdcarcmoB0968
CmoCh18G013090Cucumber (Chinese Long) v3cmocucB0479
CmoCh18G013090Cucumber (Chinese Long) v3cmocucB0490
CmoCh18G013090Cucumber (Chinese Long) v3cmocucB0491