Carg22140 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22140
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 like
Location	Cucurbita_argyrosperma_scaffold_229 : 258007 .. 260455 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTCAACGGGGAGAGAAAGGCCCCTTCGTTCTCCCAAAGCGCCTAGCTCGTCACGACTCACAGAGTGATCGACAGAGAGACATAGGAGTTTTCCGACGATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATCGGTATGTATATAATTTTCTGCAACCAAAGTTCTATTTTTTACATATTTGTGAAATTTTGATGACAGTCTATTTCCGTTTCATTTCCTTGTCCTATCTGTTTCGTTATGGGAAGGGAATGTATGAATTGGGGATGGAAAATGGCAGGATTTTCGAGTTATGTGATATTTCTATAATTGCATTGCGTGGAAATGATGGAAACCGAACCTTTCGTACTCAAATTATGAGTTTGGCATCGGTAATGAGACCTTGCAGGCATGTTTTAAATACAAAAGATCCCTATATAAGAGAAAGATTATGGGTATATGAAATCTTTTTGGGTAGACGAAAAGCAAAGTTGTTGTTAGTATTTATGTTCAAAGTGGACGATATCATGTCATTGTGGAGATAGATAGAGGTCGTATGATCCCAAATAGCTGGTATTAGAGTCATGTCCCGAACTTAGCCGTGTTAGTAAAATCCTTGAGTTCCAAATGTAAATGTAGTTAGTCATGAATCCGTGGTTGAGCTTTTGGATAGGTAGTGTGTGCTGTGAGGAGTAAACCTAATTAAAAAGTAATATGTAAAAGTGTAGTTTGAAGGTACGACTATGTGAGGGTAGACTCGAGATGATACTTTGTGCTAGAGGAGGATTGTTTGCGTTAACTAGATAAGAATAAATCCTATAACTGGAGGATTGTTGGCACTGCCTAGATAAGAAAAAAATCATGGGTTATATGAGTGTGAACAATCGTCTCCATTGGAATAAGACTTTTTTAGAGAAAGCAAAAGCAAAATCACGAGTGTTTATGCTCGAAGTGGACAATAACATATCATTACAGGGAAGATCATTGAAAATACAAACAAAGTCCCACATTGACCTTATAAAGAAAAAGTCATAGGTAGATGAGTGAGGACAACCTTCTCCAATAAAAATGAGGCCTTTGAGAGAAAATCAAAACAAAGCCACGAAGGTTTATGCCGAAAGTGAAGATTATCATACTATTGTGGAGATAGGTCGTTGAATGTCAAATAATGGCATTTGCATCTTGTTGTACTGACAAAGCTGTGTTAACACCTATGAATTAGACTGTACATATCCTTTTGTCATTGCTAGCTTCTGGCCTAATAGCAATCCCTGATTTCTGTTATAACCTGAGGATTGTGAAAATTGCATGTGTGAAGCAATATGCCCGACTTCTCTGGTCTTAGCTGCATTGGCGCACATTCATTATTTCATAGACGGAGCCAATATTTTAAATGTCGATGTTCACGAAAACGTCAAGATCTCAATTTTATGAAAATTTCAATGAAAATACCGAGAAAATGCGAGCTTCCCCTTTGCTCTATAGAAATGGATGGAAATGCCTACTACTCATTCCCATTCAATAGGTTCACAGTGGGGCTGAAAACCAGTGTCGATGAATATTTATTTAGAACCGGTCATCACAATCTGTTTGTAGTTTTTTTAGTCACAAGTTACTTGAAATATGCAGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCGAAGCATGTTCCTCTGCACCGACCAGGCCCTCTCCCTGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTGCACAGAAAGTAGAGACGACCGACAAAGCGTCTCAGGTGACAGAATGATTCTTCTTCACCATTTGGAGATTTCAAGTTTCAGAATCGAAAGCTGTTATTTATCCAATTATGTTTGTTCTTCAATAGGAATGATTGTTCGCAAAGTCGTGTACTTCAATAATAATCTTTACCCGACTCTGGAATGACATCAATTTACCCTTTCTTTGTCTTGTTTAAATTTTACTGTGCACACCAGCCCAGTCACTTCTGGACTGGTTTTGAGAATCAGCAATTTTAATCTTTTATTCCATAGATCGGAGAATAATTACTAAATTTTTGGATTTGTGTCTGATTGGTCTATGAACTTTGATGGATGTATCTTTTTGGTCTCGGACTTATAAGACAATAAATTGAAGGTTCAAGAACTTATTAGACA

mRNA sequence

AATCTCAACGGGGAGAGAAAGGCCCCTTCGTTCTCCCAAAGCGCCTAGCTCGTCACGACTCACAGAGTGATCGACAGAGAGACATAGGAGTTTTCCGACGATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATCGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCGAAGCATGTTCCTCTGCACCGACCAGGCCCTCTCCCTGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTGCACAGAAAGTAGAGACGACCGACAAAGCGTCTCAGGTGACAGAATGATTCTTCTTCACCATTTGGAGATTTCAAGTTTCAGAATCGAAAGCTGTTATTTATCCAATTATGTTTGTTCTTCAATAGGAATGATTGTTCGCAAAGTCGTGTACTTCAATAATAATCTTTACCCGACTCTGGAATGACATCAATTTACCCTTTCTTTGTCTTGTTTAAATTTTACTGTGCACACCAGCCCAGTCACTTCTGGACTGGTTTTGAGAATCAGCAATTTTAATCTTTTATTCCATAGATCGGAGAATAATTACTAAATTTTTGGATTTGTGTCTGATTGGTCTATGAACTTTGATGGATGTATCTTTTTGGTCTCGGACTTATAAGACAATAAATTGAAGGTTCAAGAACTTATTAGACA

Coding sequence (CDS)

ATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATCGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCGAAGCATGTTCCTCTGCACCGACCAGGCCCTCTCCCTGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTGCACAGAAAGTAGAGACGACCGACAAAGCGTCTCAGGTGACAGAATGA

Protein sequence

MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETTDKASQVTE

Homology

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BLAST of Carg22140 vs. NCBI nr
Match: XP_022945797.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Cucurbita moschata] >XP_023542504.1 probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338.6 bits (867), Expect = 1.2e-89
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETTDKASQVTE 170
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVET DKASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 169

[Close]

BLAST of Carg22140 vs. NCBI nr
Match: XP_022968495.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Cucurbita maxima])

HSP 1 Score: 334.0 bits (855), Expect = 3.1e-88
Identity = 168/170 (98.82%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGG-SAQKVETTDKASQVTE 170
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGG SAQKVET DKASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 170

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BLAST of Carg22140 vs. NCBI nr
Match: XP_008439300.1 (PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 6.0e-84
Identity = 160/169 (94.67%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETTDKASQVTE 170
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAI SG S +KVETT+KASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI-SGDSTRKVETTEKASQVTE 168

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BLAST of Carg22140 vs. NCBI nr
Match: XP_022141236.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Momordica charantia])

HSP 1 Score: 316.6 bits (810), Expect = 5.0e-83
Identity = 157/169 (92.90%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGL+VVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLEVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEE+DWE+IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEDDWEKIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETTDKASQVTE 170
           ENDA VPKH+PLHRPGPLPEEFYKTLEAI  GGS+QKVET +KASQVTE
Sbjct: 121 ENDASVPKHIPLHRPGPLPEEFYKTLEAI-GGGSSQKVETAEKASQVTE 168

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BLAST of Carg22140 vs. NCBI nr
Match: XP_004140748.1 (PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 1.1e-82
Identity = 157/169 (92.90%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETTDKASQVTE 170
           ENDAPVPKH+PLHRPGPLPEEFYKTLEAI SG S +KVET +KASQVTE
Sbjct: 121 ENDAPVPKHIPLHRPGPLPEEFYKTLEAI-SGDSTKKVETPEKASQVTE 168

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BLAST of Carg22140 vs. TAIR10
Match: AT5G52840.1 (NADH-ubiquinone oxidoreductase-related)

HSP 1 Score: 275.0 bits (702), Expect = 3.1e-74
Identity = 135/169 (79.88%), Postives = 144/169 (85.21%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAR VLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TR RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETTDKASQVTE 170
           ENDAP+PKHVP HRPGPLPE+FYKTLE + +    +    T    Q+ E
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAATPSDPQLKE 169

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BLAST of Carg22140 vs. TAIR10
Match: AT4G28005.1 (BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT5G52840.1))

HSP 1 Score: 114.4 bits (285), Expect = 6.9e-26
Identity = 75/169 (44.38%), Postives = 87/169 (51.48%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MF RVIGRPLLAKVKQTTGIV                                       
Sbjct: 1   MFQRVIGRPLLAKVKQTTGIV--------------------------------------- 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
                +VC EEEDW  IEKRL CG+VEELIEEA DEL L+ KMI              +I
Sbjct: 61  -----EVCPEEEDWGVIEKRLACGKVEELIEEASDELTLVGKMI--------GSLHPNLI 115

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETTDKASQVTE 170
              AP+PKHVP HRPGPLPEEFY+TL+A++S    +   T+    Q+ E
Sbjct: 121 L--APIPKHVPHHRPGPLPEEFYRTLQAVNSESKTEITATSSSDPQLKE 115

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BLAST of Carg22140 vs. Swiss-Prot
Match: sp|Q9FLX7|NDUA5_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g52840 PE=1 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.5e-73
Identity = 135/169 (79.88%), Postives = 144/169 (85.21%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAR VLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TR RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETTDKASQVTE 170
           ENDAP+PKHVP HRPGPLPE+FYKTLE + +    +    T    Q+ E
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAATPSDPQLKE 169

[Close]

BLAST of Carg22140 vs. Swiss-Prot
Match: sp|Q559Z4|NDUA5_DICDI (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyostelium discoideum OX=44689 GN=ndufa5 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-17
Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K++TGI GL V PNAR +L GLY + L++++ +P   GYRK+ E  T+ RL V + E D
Sbjct: 6   IKKSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETD 65

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 121
             +IE ++  GQ+EELI +A+++LK++  + E   W +PD  +  V+
Sbjct: 66  IVKIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPDKNKPPVV 112

[Close]

BLAST of Carg22140 vs. Swiss-Prot
Match: sp|P23935|NDUA5_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus OX=9913 GN=NDUFA5 PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY K L  +  +P++  YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            +++E+RL  GQ+EE+I +A++EL L  KMI+W PW
Sbjct: 65  VKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 100

[Close]

BLAST of Carg22140 vs. Swiss-Prot
Match: sp|Q9CPP6|NDUA5_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus OX=10090 GN=Ndufa5 PE=1 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 4.9e-13
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY KTL  ++  P+   YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            +++E  L  G+VEE+I +A+ EL L  KM++W PW
Sbjct: 65  VKKLEALLQGGEVEEVILQAEKELSLARKMLKWKPW 100

[Close]

BLAST of Carg22140 vs. Swiss-Prot
Match: sp|Q18359|NDUA5_CAEEL (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Caenorhabditis elegans OX=6239 GN=C33A12.1 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.4e-13
Identity = 35/95 (36.84%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 15  KQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEEDW 74
           K+TTGI GL V  +    L  +YG+ L+ ++ +P D  YRK  E+  + RL + Q E D 
Sbjct: 40  KKTTGITGLFVNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDI 99

Query: 75  EQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
           +++E+++G GQ+EE+IE+A+ EL+    +++   W
Sbjct: 100 KKLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAW 134

[Close]

BLAST of Carg22140 vs. TrEMBL
Match: tr|A0A1S3AZ47|A0A1S3AZ47_CUCME (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484126 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 3.9e-84
Identity = 160/169 (94.67%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETTDKASQVTE 170
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAI SG S +KVETT+KASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI-SGDSTRKVETTEKASQVTE 168

[Close]

BLAST of Carg22140 vs. TrEMBL
Match: tr|A0A1Q3C8A2|A0A1Q3C8A2_CEPFO (ETC_C1_NDUFA5 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19796 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.0e-76
Identity = 142/151 (94.04%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPL+AK KQTTGIVGLDVVPNAREVLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLMAKAKQTTGIVGLDVVPNAREVLIKLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEAIEKRLGCGQVEELIEEAQDELKLIDKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISS 152
           ENDAPVPKHVPLHRPGPLPEEFYKTLEA++S
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAVTS 151

[Close]

BLAST of Carg22140 vs. TrEMBL
Match: tr|A0A2C9VT73|A0A2C9VT73_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G153700 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 5.2e-76
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLINLYTKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEEEDWE IE+RLGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TTHRLKVCQEEEDWEVIERRLGCGQVEELIEEAQDELKLIEKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSA 156
           ENDAPVPKHVPLHRPGPLPEEFYKTLEA+ S   A
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAVQSKNDA 155

[Close]

BLAST of Carg22140 vs. TrEMBL
Match: tr|A0A2P2QNY1|A0A2P2QNY1_RHIMU (NADH dehydrogenase OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.5e-75
Identity = 140/151 (92.72%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPL+AKVKQTTGIVGL+VVPNAREVLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLMAKVKQTTGIVGLEVVPNAREVLINLYNKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEE++WE IEKRLGCGQVEELIEEAQDELKLI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEDNWEMIEKRLGCGQVEELIEEAQDELKLIDKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISS 152
           ENDAPVPKHVPLHRPGPLPEEFYKTLEA+ S
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAVQS 151

[Close]

BLAST of Carg22140 vs. TrEMBL
Match: tr|A0A059DJN4|A0A059DJN4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02717 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 2.0e-75
Identity = 142/166 (85.54%), Postives = 149/166 (89.76%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPL+AKVKQTTGIVGLDVVPNAREVLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLMAKVKQTTGIVGLDVVPNAREVLIELYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVC+EEEDWE IEKRLGCGQVEEL+EEA+DEL LI+KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCREEEDWEAIEKRLGCGQVEELVEEARDELTLISKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETTDKASQ 167
           ENDAP+PKHVP HRPGPLPEEFYKTLE IS G    K E T   SQ
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEEFYKTLETISIGQKESKPEVTSGESQ 166

The following BLAST results are available for this feature:

BLAST of Carg22140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945797.1	1.2e-89	99.41	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
XP_022968495.1	3.1e-88	98.82	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
XP_008439300.1	6.0e-84	94.67	PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5...	[more]
XP_022141236.1	5.0e-83	92.90	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
XP_004140748.1	1.1e-82	92.90	PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5...	[more]

BLAST of Carg22140 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52840.1	3.1e-74	79.88	NADH-ubiquinone oxidoreductase-related	[more]
AT4G28005.1	6.9e-26	44.38	BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-relat...	[more]

BLAST of Carg22140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FLX7\|NDUA5_ARATH	5.5e-73	79.88	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
sp\|Q559Z4\|NDUA5_DICDI	5.6e-17	41.12	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyos...	[more]
sp\|P23935\|NDUA5_BOVIN	1.5e-14	42.71	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus OX=99...	[more]
sp\|Q9CPP6\|NDUA5_MOUSE	4.9e-13	41.67	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus OX=...	[more]
sp\|Q18359\|NDUA5_CAEEL	6.4e-13	36.84	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Caenorh...	[more]

BLAST of Carg22140 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZ47\|A0A1S3AZ47_CUCME	3.9e-84	94.67	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
tr\|A0A1Q3C8A2\|A0A1Q3C8A2_CEPFO	3.0e-76	94.04	ETC_C1_NDUFA5 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CF...	[more]
tr\|A0A2C9VT73\|A0A2C9VT73_MANES	5.2e-76	92.26	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G153700 PE=4 SV=...	[more]
tr\|A0A2P2QNY1\|A0A2P2QNY1_RHIMU	1.5e-75	92.72	NADH dehydrogenase OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A059DJN4\|A0A059DJN4_EUCGR	2.0e-75	85.54	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02717 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016651	oxidoreductase activity, acting on NAD(P)H

Vocabulary: **Cellular Component**
Term	Definition
GO:0005743	mitochondrial inner membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0022904	respiratory electron transport chain

Vocabulary: **INTERPRO**
Term	Definition
IPR006806	ETC_CI_29_9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22140-RA	Carg22140-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006806	ETC complex I subunit	PFAM	PF04716	ETC_C1_NDUFA5	coord: 22..88 e-value: 5.7E-28 score: 96.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..169
None	No IPR available	PANTHER	PTHR12653	NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT	coord: 10..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22140	Cla006136	Watermelon (97103) v1	carwmB0736
Carg22140	Csa3G184070	Cucumber (Chinese Long) v2	carcuB0754
Carg22140	MELO3C006949	Melon (DHL92) v3.5.1	carmeB0734
Carg22140	ClCG05G008500	Watermelon (Charleston Gray)	carwcgB0715
Carg22140	CSPI03G17390	Wild cucumber (PI 183967)	carcpiB0771
Carg22140	Cucsa.108250	Cucumber (Gy14) v1	carcgyB0828
Carg22140	CmaCh18G012780	Cucurbita maxima (Rimu)	carcmaB1032
Carg22140	CmaCh16G000910	Cucurbita maxima (Rimu)	carcmaB1031
Carg22140	CmoCh18G013090	Cucurbita moschata (Rifu)	carcmoB1003
Carg22140	CmoCh16G000960	Cucurbita moschata (Rifu)	carcmoB1002
Carg22140	Lsi05G011820	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22140	Cp4.1LG09g00560	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22140	Cp4.1LG14g06380	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22140	CsGy3G017440	Cucumber (Gy14) v2	carcgybB0733
Carg22140	MELO3C006949.2	Melon (DHL92) v3.6.1	carmedB0745
Carg22140	CsaV3_3G017590	Cucumber (Chinese Long) v3	carcucB0774
Carg22140	Cla97C05G090620	Watermelon (97103) v2	carwmbB0772
Carg22140	Bhi01G001039	Wax gourd	carwgoB0870

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22140	Carg15100	Silver-seed gourd	carcarB594

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22140	Silver-seed gourd	carcarB583