Cucsa.103210 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.103210
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description60S ribosomal protein L26, putative
Locationscaffold00927 : 2051930 .. 2052753 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTCTTCCATTCACCCGGGCTTCCTATCCCCTTtCCCTTTCCCCCCcTTCCCCATTCCCATTTTCGCCGGCCGCCATGAAGTACAATCCGAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCGGCTCCGTCCAGCGTTCGTCGGGTTATCATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCTATGCCGATTCGGAAGGATGACGAGGTCCAAGTCGTCCGTGGAACTTACAAGGGCCGTGAGGGCAAGGTAGTGCAGGTGTATCGTAGGAAGTGGATTATCCACATCGAGCGCATCACTCGGGAAAAGGTTAACGGTTCCACTGTCAACGTCGGCATCAAACCCTCGAAGGTCGTGATTACGAAGCTCAGGTTGGACAAGGACCGTAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCGCCGACAAGGATAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGATTAATTTTGAAAATGGTGATGTTTAATTTGATAGAACTGTTATTTTCTTTCATAGTTATCTATTGTGTTTTGTGTTCTTAAGATACTAGGAAAATTTTCCTCGGACATGTGGCTATAATTGTCGACTCTAGAGGCCTTAATTTTTATGGTATTTTTAAATCACATTTTGTTATTCCAATGAGAGCTACTCTTGATGTTTGATTCATAATGTTGCTTGCTACCTCTCTTTACATTTGCTTATTTGTAGTACATGATCTATGCAATCTGCTATGGATGACATCTATTAAGTTCTCATGGGGTTTGAACTGCT

mRNA sequence

GGTTTCTTCCATTCACCCGGGCTTCCTATCCCCTTTCCCTTTCCCCCCCTTCCCCATTCCCATTTTCGCCGGCCGCCATGAAGTACAATCCGAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCGGCTCCGTCCAGCGTTCGTCGGGTTATCATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCTATGCCGATTCGGAAGGATGACGAGGTCCAAGTCGTCCGTGGAACTTACAAGGGCCGTGAGGGCAAGGTAGTGCAGGTGTATCGTAGGAAGTGGATTATCCACATCGAGCGCATCACTCGGGAAAAGGTTAACGGTTCCACTGTCAACGTCGGCATCAAACCCTCGAAGGTCGTGATTACGAAGCTCAGGTTGGACAAGGACCGTAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCGCCGACAAGGATAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGATTAATTTTGAAAATGGTGATGTTTAATTTGATAGAACTGTTATTTTCTTTCATAGTTATCTATTGTGTTTTGTGTTCTTAAGATACTAGGAAAATTTTCCTCGGACATGTGGCTATAATTGTCGACTCTAGAGGCCTTAATTTTTATGGTATTTTTAAATCACATTTTGTTATTCCAATGAGAGCTACTCTTGATGTTTGATTCATAATGTTGCTTGCTACCTCTCTTTACATTTGCTTATTTGTAGTACATGATCTATGCAATCTGCTATGGATGACATCTATTAAGTTCTCATGGGGTTTGAACTGCT

Coding sequence (CDS)

ATGAAGTACAATCCGAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCGGCTCCGTCCAGCGTTCGTCGGGTTATCATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCTATGCCGATTCGGAAGGATGACGAGGTCCAAGTCGTCCGTGGAACTTACAAGGGCCGTGAGGGCAAGGTAGTGCAGGTGTATCGTAGGAAGTGGATTATCCACATCGAGCGCATCACTCGGGAAAAGGTTAACGGTTCCACTGTCAACGTCGGCATCAAACCCTCGAAGGTCGTGATTACGAAGCTCAGGTTGGACAAGGACCGTAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCGCCGACAAGGATAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGATTAA

Protein sequence

MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDRKGKGRAAADKDKGTKFTAEDIMQSVD*
Homology
[Close]
BLAST of Cucsa.103210 vs. Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 263.1 bits (671), Expect = 1.9e-69
Identity = 129/146 (88.36%), Postives = 142/146 (97.26%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]
BLAST of Cucsa.103210 vs. Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.3e-66
Identity = 122/146 (83.56%), Postives = 140/146 (95.89%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K  GRAAADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]
BLAST of Cucsa.103210 vs. Swiss-Prot
Match: RL26_BRACM (60S ribosomal protein L26 OS=Brassica campestris GN=RPL26 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 119/145 (82.07%), Postives = 135/145 (93.10%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRR++RK HF+A SS RRV MS+PLSTDLR KYNVRSMPIRKDDE Q+VRG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK +IHIER+TREKVNG+TVNVG++P+KVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSV 146
           K KGRAAADKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]
BLAST of Cucsa.103210 vs. Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-46
Identity = 96/142 (67.61%), Postives = 119/142 (83.80%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAAADKDKGTKFTAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]
BLAST of Cucsa.103210 vs. Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.9e-46
Identity = 96/142 (67.61%), Postives = 118/142 (83.10%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAAADKDKGTKFTAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]
BLAST of Cucsa.103210 vs. TrEMBL
Match: A0A0A0KGI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495670 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.3e-74
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cucsa.103210 vs. TrEMBL
Match: W9RS71_9ROSA (60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009395 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-71
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cucsa.103210 vs. TrEMBL
Match: A0A0D2QXM5_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_007G223100 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.4e-71
Identity = 138/146 (94.52%), Postives = 144/146 (98.63%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 39  MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 98

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 99  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 158

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 159 KAKGRAAADKDKGTKFSAEDIMQSVD 184

[Close]
BLAST of Cucsa.103210 vs. TrEMBL
Match: A0A061F5L5_THECC (Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_025183 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.4e-71
Identity = 137/146 (93.84%), Postives = 144/146 (98.63%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR++MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cucsa.103210 vs. TrEMBL
Match: A0A067KAN0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12534 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.4e-71
Identity = 137/146 (93.84%), Postives = 143/146 (97.95%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR++MSAPLSTDLR KYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cucsa.103210 vs. TAIR10
Match: AT3G49910.1 (AT3G49910.1 Translation protein SH3-like family protein)

HSP 1 Score: 263.1 bits (671), Expect = 1.0e-70
Identity = 129/146 (88.36%), Postives = 142/146 (97.26%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]
BLAST of Cucsa.103210 vs. TAIR10
Match: AT5G67510.1 (AT5G67510.1 Translation protein SH3-like family protein)

HSP 1 Score: 251.9 bits (642), Expect = 2.4e-67
Identity = 122/146 (83.56%), Postives = 140/146 (95.89%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K  GRAAADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]
BLAST of Cucsa.103210 vs. NCBI nr
Match: gi|449448216|ref|XP_004141862.1| (PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 3.3e-74
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           KGKGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cucsa.103210 vs. NCBI nr
Match: gi|703123225|ref|XP_010102767.1| (60S ribosomal protein L26-1 [Morus notabilis])

HSP 1 Score: 276.6 bits (706), Expect = 2.6e-71
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cucsa.103210 vs. NCBI nr
Match: gi|225439002|ref|XP_002284455.1| (PREDICTED: 60S ribosomal protein L26-1 [Vitis vinifera])

HSP 1 Score: 276.2 bits (705), Expect = 3.4e-71
Identity = 138/146 (94.52%), Postives = 143/146 (97.95%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLSTDLRSKYN RSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSTDLRSKYNARSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKVVQVYRRKW+IH+ERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TFKGREGKVVQVYRRKWVIHVERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cucsa.103210 vs. NCBI nr
Match: gi|802645921|ref|XP_012079404.1| (PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas])

HSP 1 Score: 276.2 bits (705), Expect = 3.4e-71
Identity = 137/146 (93.84%), Postives = 143/146 (97.95%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR++MSAPLSTDLR KYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Cucsa.103210 vs. NCBI nr
Match: gi|823193080|ref|XP_012491962.1| (PREDICTED: 60S ribosomal protein L26-1 [Gossypium raimondii])

HSP 1 Score: 276.2 bits (705), Expect = 3.4e-71
Identity = 138/146 (94.52%), Postives = 144/146 (98.63%), Query Frame = 1 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 147
           K KGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFSAEDIMQSVD 146

The following BLAST results are available for this feature:
BLAST of Cucsa.103210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL261_ARATH1.9e-6988.3660S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2[more]
RL262_ARATH4.3e-6683.5660S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1[more]
RL26_BRACM1.2e-6382.0760S ribosomal protein L26 OS=Brassica campestris GN=RPL26 PE=2 SV=1[more]
RL26_RAT1.3e-4667.6160S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1[more]
RL26_HUMAN2.9e-4667.6160S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1[more]
BLAST of Cucsa.103210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGI0_CUCSA2.3e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495670 PE=4 SV=1[more]
W9RS71_9ROSA1.8e-7195.2160S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009395 PE=3 SV=1[more]
A0A0D2QXM5_GOSRA2.4e-7194.52Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_007G223100 PE=... [more]
A0A061F5L5_THECC2.4e-7193.84Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_025183 PE=... [more]
A0A067KAN0_JATCU2.4e-7193.84Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12534 PE=3 SV=1[more]
BLAST of Cucsa.103210 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49910.11.0e-7088.36 Translation protein SH3-like family protein[more]
AT5G67510.12.4e-6783.56 Translation protein SH3-like family protein[more]
BLAST of Cucsa.103210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448216|ref|XP_004141862.1|3.3e-74100.00PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus][more]
gi|703123225|ref|XP_010102767.1|2.6e-7195.2160S ribosomal protein L26-1 [Morus notabilis][more]
gi|225439002|ref|XP_002284455.1|3.4e-7194.52PREDICTED: 60S ribosomal protein L26-1 [Vitis vinifera][more]
gi|802645921|ref|XP_012079404.1|3.4e-7193.84PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas][more]
gi|823193080|ref|XP_012491962.1|3.4e-7194.52PREDICTED: 60S ribosomal protein L26-1 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005756Ribosomal_L26/L24P_euk/arc
IPR005824KOW
IPR005825Ribosomal_L24/26_CS
IPR008991Translation_prot_SH3-like_sf
IPR014722Rib_L2_dom2
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005622intracellular
GO:0005840ribosome
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.103210.1Cucsa.103210.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005756Ribosomal protein L26/L24P, eukaryotic/archaealPANTHERPTHR1114360S RIBOSOMAL PROTEIN L26 FAMILY MEMBERcoord: 2..146
score: 3.9E
IPR005756Ribosomal protein L26/L24P, eukaryotic/archaealPFAMPF16906Ribosomal_L26coord: 8..121
score: 1.9
IPR005756Ribosomal protein L26/L24P, eukaryotic/archaealTIGRFAMsTIGR01080TIGR01080coord: 8..122
score: 1.1
IPR005824KOWPFAMPF00467KOWcoord: 51..82
score: 1.
IPR005824KOWSMARTSM00739kow_9coord: 48..75
score: 7.
IPR005825Ribosomal protein L24/L26, conserved sitePROSITEPS01108RIBOSOMAL_L24coord: 52..69
scor
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 8..125
score: 4.3
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 7..125
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.103210Cla014030Watermelon (97103) v1cgywmB136
Cucsa.103210Csa6G495670Cucumber (Chinese Long) v2cgycuB121
Cucsa.103210MELO3C007635Melon (DHL92) v3.5.1cgymeB131
Cucsa.103210ClCG01G017590Watermelon (Charleston Gray)cgywcgB134
Cucsa.103210CSPI06G28920Wild cucumber (PI 183967)cgycpiB122
Cucsa.103210CmaCh03G009150Cucurbita maxima (Rimu)cgycmaB0231
Cucsa.103210CmoCh07G006580Cucurbita moschata (Rifu)cgycmoB0233
Cucsa.103210Lsi01G008930Bottle gourd (USVL1VR-Ls)cgylsiB125
Cucsa.103210Cp4.1LG10g02120Cucurbita pepo (Zucchini)cgycpeB0211
Cucsa.103210Cp4.1LG19g10590Cucurbita pepo (Zucchini)cgycpeB0220
Cucsa.103210MELO3C007635.2Melon (DHL92) v3.6.1cgymedB131
Cucsa.103210CsaV3_6G044130Cucumber (Chinese Long) v3cgycucB126
Cucsa.103210Cla97C01G016760Watermelon (97103) v2cgywmbB127
Cucsa.103210Bhi03G000794Wax gourdcgywgoB151
Cucsa.103210Carg18547Silver-seed gourdcarcgyB0001
Cucsa.103210Carg00789Silver-seed gourdcarcgyB0467
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.103210Cucumber (Chinese Long) v3cgycucB117
Cucsa.103210Cucumber (Chinese Long) v3cgycucB124
Cucsa.103210Watermelon (97103) v2cgywmbB133
Cucsa.103210Wax gourdcgywgoB146
Cucsa.103210Cucumber (Gy14) v1cgycgyB048
Cucsa.103210Cucumber (Gy14) v1cgycgyB052
Cucsa.103210Cucurbita maxima (Rimu)cgycmaB0226
Cucsa.103210Cucurbita maxima (Rimu)cgycmaB0220
Cucsa.103210Cucurbita maxima (Rimu)cgycmaB0224
Cucsa.103210Cucurbita maxima (Rimu)cgycmaB0232
Cucsa.103210Cucurbita maxima (Rimu)cgycmaB0235
Cucsa.103210Cucurbita moschata (Rifu)cgycmoB0214
Cucsa.103210Cucurbita moschata (Rifu)cgycmoB0215
Cucsa.103210Cucurbita moschata (Rifu)cgycmoB0219
Cucsa.103210Cucurbita moschata (Rifu)cgycmoB0221
Cucsa.103210Cucurbita moschata (Rifu)cgycmoB0227
Cucsa.103210Cucurbita moschata (Rifu)cgycmoB0228
Cucsa.103210Wild cucumber (PI 183967)cgycpiB115
Cucsa.103210Wild cucumber (PI 183967)cgycpiB121
Cucsa.103210Cucumber (Chinese Long) v2cgycuB113
Cucsa.103210Cucumber (Chinese Long) v2cgycuB120
Cucsa.103210Melon (DHL92) v3.5.1cgymeB126
Cucsa.103210Melon (DHL92) v3.5.1cgymeB130
Cucsa.103210Watermelon (Charleston Gray)cgywcgB137
Cucsa.103210Watermelon (Charleston Gray)cgywcgB138
Cucsa.103210Watermelon (97103) v1cgywmB132
Cucsa.103210Cucurbita pepo (Zucchini)cgycpeB0215
Cucsa.103210Cucurbita pepo (Zucchini)cgycpeB0218
Cucsa.103210Cucurbita pepo (Zucchini)cgycpeB0227
Cucsa.103210Bottle gourd (USVL1VR-Ls)cgylsiB128
Cucsa.103210Bottle gourd (USVL1VR-Ls)cgylsiB129
Cucsa.103210Melon (DHL92) v3.6.1cgymedB125
Cucsa.103210Melon (DHL92) v3.6.1cgymedB130
Cucsa.103210Silver-seed gourdcarcgyB0376
Cucsa.103210Silver-seed gourdcarcgyB0433
Cucsa.103210Silver-seed gourdcarcgyB0523
Cucsa.103210Silver-seed gourdcarcgyB0870