CmoCh07G006580 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G006580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Large subunit rib
Location	Cmo_Chr07 : 2961045 .. 2961485 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACAACCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCTGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGAATGACCTCCGGTCAAAGTACAATGTCCGATCCATGCCGATTAGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGCCGGGAAGGCAAGGTAGTGCAGGTGTACCGTAGAAAGTGGGTCATCCACATTGAACGCATCACTCGTGAGAAGGTTAATGGATCCACTGTCAATGTCGGCATCAACCCCTCGAAGGTCGTGATTACAAAACTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGTAAGGGCCGTGCTGCCGCTGACAAGGACAAGGGGACCAAGTTCTCCGCCGAGGATATCATGCAGAGCGTCGATTAA

mRNA sequence

ATGAAGTACAACCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCTGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGAATGACCTCCGGTCAAAGTACAATGTCCGATCCATGCCGATTAGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGCCGGGAAGGCAAGGTAGTGCAGGTGTACCGTAGAAAGTGGGTCATCCACATTGAACGCATCACTCGTGAGAAGGTTAATGGATCCACTGTCAATGTCGGCATCAACCCCTCGAAGGTCGTGATTACAAAACTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGTAAGGGCCGTGCTGCCGCTGACAAGGACAAGGGGACCAAGTTCTCCGCCGAGGATATCATGCAGAGCGTCGATTAA

Coding sequence (CDS)

ATGAAGTACAACCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGCAAGGCTCATTTTTCTGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGAATGACCTCCGGTCAAAGTACAATGTCCGATCCATGCCGATTAGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGCCGGGAAGGCAAGGTAGTGCAGGTGTACCGTAGAAAGTGGGTCATCCACATTGAACGCATCACTCGTGAGAAGGTTAATGGATCCACTGTCAATGTCGGCATCAACCCCTCGAAGGTCGTGATTACAAAACTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGTAAGGGCCGTGCTGCCGCTGACAAGGACAAGGGGACCAAGTTCTCCGCCGAGGATATCATGCAGAGCGTCGATTAA

Homology

[Close]

BLAST of CmoCh07G006580 vs. Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 251.5 bits (641), Expect = 5.5e-66
Identity = 128/146 (87.67%), Postives = 140/146 (95.89%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLS DLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADK+KGTKF++ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of CmoCh07G006580 vs. Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.1e-65
Identity = 125/146 (85.62%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K  GRAAADK+KGTKFSAED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of CmoCh07G006580 vs. Swiss-Prot
Match: RL26_BRACM (60S ribosomal protein L26 OS=Brassica campestris GN=RPL26 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.5e-60
Identity = 118/145 (81.38%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRR++RK HF+A SS RRV MS+PLS DLR KYNVRSMPIRKDDE Q+VRG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSV 146
           K KGRAAADKDKGTKF+A D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]

BLAST of CmoCh07G006580 vs. Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-44
Identity = 97/142 (68.31%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAAADKDKGTKFSAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]

BLAST of CmoCh07G006580 vs. Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-44
Identity = 97/142 (68.31%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAAADKDKGTKFSAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]

BLAST of CmoCh07G006580 vs. TrEMBL
Match: A0A0A0KGI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495670 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.4e-70
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           KGKGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh07G006580 vs. TrEMBL
Match: A0A0D2QXM5_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_007G223100 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 4.4e-70
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 39  MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 98

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 99  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 158

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADKDKGTKFSAEDIMQSVD
Sbjct: 159 KAKGRAAADKDKGTKFSAEDIMQSVD 184

[Close]

BLAST of CmoCh07G006580 vs. TrEMBL
Match: A0A0D2RKC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G108100 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.8e-70
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS+DL+SKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLKSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADKDKGTKFSAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]

BLAST of CmoCh07G006580 vs. TrEMBL
Match: W9RS71_9ROSA (60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009395 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-69
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh07G006580 vs. TrEMBL
Match: A0A061F5L5_THECC (Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_025183 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.9e-69
Identity = 138/146 (94.52%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR++MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh07G006580 vs. TAIR10
Match: AT3G49910.1 (AT3G49910.1 Translation protein SH3-like family protein)

HSP 1 Score: 251.5 bits (641), Expect = 3.1e-67
Identity = 128/146 (87.67%), Postives = 140/146 (95.89%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLS DLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADK+KGTKF++ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of CmoCh07G006580 vs. TAIR10
Match: AT5G67510.1 (AT5G67510.1 Translation protein SH3-like family protein)

HSP 1 Score: 248.1 bits (632), Expect = 3.5e-66
Identity = 125/146 (85.62%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K  GRAAADK+KGTKFSAED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of CmoCh07G006580 vs. NCBI nr
Match: gi|449448216|ref|XP_004141862.1| (PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 4.8e-70
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           KGKGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh07G006580 vs. NCBI nr
Match: gi|823193080|ref|XP_012491962.1| (PREDICTED: 60S ribosomal protein L26-1 [Gossypium raimondii])

HSP 1 Score: 271.9 bits (694), Expect = 6.3e-70
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADKDKGTKFSAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]

BLAST of CmoCh07G006580 vs. NCBI nr
Match: gi|763776785|gb|KJB43908.1| (hypothetical protein B456_007G223100, partial [Gossypium raimondii])

HSP 1 Score: 271.9 bits (694), Expect = 6.3e-70
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 39  MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 98

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 99  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 158

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADKDKGTKFSAEDIMQSVD
Sbjct: 159 KAKGRAAADKDKGTKFSAEDIMQSVD 184

[Close]

BLAST of CmoCh07G006580 vs. NCBI nr
Match: gi|823244683|ref|XP_012455008.1| (PREDICTED: 60S ribosomal protein L26-1-like [Gossypium raimondii])

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-69
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS+DL+SKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLKSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADKDKGTKFSAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]

BLAST of CmoCh07G006580 vs. NCBI nr
Match: gi|703123225|ref|XP_010102767.1| (60S ribosomal protein L26-1 [Morus notabilis])

HSP 1 Score: 270.4 bits (690), Expect = 1.8e-69
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 147
           K KGRAAADKDKGTKF+AEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

The following BLAST results are available for this feature:

BLAST of CmoCh07G006580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL261_ARATH	5.5e-66	87.67	60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2	[more]
RL262_ARATH	6.1e-65	85.62	60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1	[more]
RL26_BRACM	3.5e-60	81.38	60S ribosomal protein L26 OS=Brassica campestris GN=RPL26 PE=2 SV=1	[more]
RL26_BOVIN	2.0e-44	68.31	60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1	[more]
RL26_MOUSE	2.0e-44	68.31	60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=1 SV=1	[more]

BLAST of CmoCh07G006580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGI0_CUCSA	3.4e-70	97.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495670 PE=4 SV=1	[more]
A0A0D2QXM5_GOSRA	4.4e-70	96.58	Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_007G223100 PE=...	[more]
A0A0D2RKC4_GOSRA	9.8e-70	95.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G108100 PE=3 SV=1	[more]
W9RS71_9ROSA	1.3e-69	95.89	60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009395 PE=3 SV=1	[more]
A0A061F5L5_THECC	2.9e-69	94.52	Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_025183 PE=...	[more]

BLAST of CmoCh07G006580 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49910.1	3.1e-67	87.67	Translation protein SH3-like family protein	[more]
AT5G67510.1	3.5e-66	85.62	Translation protein SH3-like family protein	[more]

BLAST of CmoCh07G006580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448216\|ref\|XP_004141862.1\|	4.8e-70	97.26	PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus]	[more]
gi\|823193080\|ref\|XP_012491962.1\|	6.3e-70	96.58	PREDICTED: 60S ribosomal protein L26-1 [Gossypium raimondii]	[more]
gi\|763776785\|gb\|KJB43908.1\|	6.3e-70	96.58	hypothetical protein B456_007G223100, partial [Gossypium raimondii]	[more]
gi\|823244683\|ref\|XP_012455008.1\|	1.4e-69	95.89	PREDICTED: 60S ribosomal protein L26-1-like [Gossypium raimondii]	[more]
gi\|703123225\|ref\|XP_010102767.1\|	1.8e-69	95.89	60S ribosomal protein L26-1 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005756	Ribosomal_L26/L24P_euk/arc
IPR005824	KOW
IPR005825	Ribosomal_L24/26_CS
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0015934	large ribosomal subunit
GO:0005622	intracellular
GO:0005840	ribosome

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G006580.1	CmoCh07G006580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	HAMAP	MF_01326_A	Ribosomal_L24_A	coord: 9..121 score: 20
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 2..146 score: 2.0E
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 score: 1.3
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	TIGRFAMs	TIGR01080	TIGR01080	coord: 8..122 score: 2.3
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 score: 2.
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 score: 7.
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69 scor
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 8..125 score: 1.29
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 7..125 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G006580	Cucsa.103210	Cucumber (Gy14) v1	cgycmoB0233
CmoCh07G006580	CmaCh03G009150	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G006580	Cla014030	Watermelon (97103) v1	cmowmB816
CmoCh07G006580	Csa6G495670	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G006580	MELO3C007635	Melon (DHL92) v3.5.1	cmomeB793
CmoCh07G006580	ClCG01G017590	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G006580	CSPI06G28920	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G006580	Lsi01G008930	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G006580	Cp4.1LG10g02120	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G006580	Cp4.1LG19g10590	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G006580	MELO3C007635.2	Melon (DHL92) v3.6.1	cmomedB896
CmoCh07G006580	CsaV3_6G044130	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G006580	Cla97C01G016760	Watermelon (97103) v2	cmowmbB849
CmoCh07G006580	Bhi03G000794	Wax gourd	cmowgoB1063
CmoCh07G006580	CsGy6G028390	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G006580	Carg00789	Silver-seed gourd	carcmoB0554
CmoCh07G006580	Carg18547	Silver-seed gourd	carcmoB0005

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G006580	Cucumber (Gy14) v1	cgycmoB0970
CmoCh07G006580	Cucumber (Gy14) v1	cgycmoB1095
CmoCh07G006580	Cucurbita maxima (Rimu)	cmacmoB065
CmoCh07G006580	Cucurbita maxima (Rimu)	cmacmoB204
CmoCh07G006580	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G006580	Wild cucumber (PI 183967)	cmocpiB847
CmoCh07G006580	Wild cucumber (PI 183967)	cmocpiB864
CmoCh07G006580	Cucumber (Chinese Long) v2	cmocuB837
CmoCh07G006580	Cucumber (Chinese Long) v2	cmocuB856
CmoCh07G006580	Melon (DHL92) v3.5.1	cmomeB773
CmoCh07G006580	Melon (DHL92) v3.5.1	cmomeB781
CmoCh07G006580	Watermelon (Charleston Gray)	cmowcgB774
CmoCh07G006580	Watermelon (Charleston Gray)	cmowcgB777
CmoCh07G006580	Watermelon (97103) v1	cmowmB807
CmoCh07G006580	Watermelon (97103) v1	cmowmB813
CmoCh07G006580	Cucurbita pepo (Zucchini)	cmocpeB815
CmoCh07G006580	Cucurbita pepo (Zucchini)	cmocpeB827
CmoCh07G006580	Bottle gourd (USVL1VR-Ls)	cmolsiB789
CmoCh07G006580	Bottle gourd (USVL1VR-Ls)	cmolsiB795
CmoCh07G006580	Cucumber (Gy14) v2	cgybcmoB249
CmoCh07G006580	Cucumber (Gy14) v2	cgybcmoB543
CmoCh07G006580	Melon (DHL92) v3.6.1	cmomedB878
CmoCh07G006580	Melon (DHL92) v3.6.1	cmomedB885
CmoCh07G006580	Silver-seed gourd	carcmoB0516
CmoCh07G006580	Silver-seed gourd	carcmoB0618
CmoCh07G006580	Silver-seed gourd	carcmoB1048
CmoCh07G006580	Cucumber (Chinese Long) v3	cmocucB0990
CmoCh07G006580	Cucumber (Chinese Long) v3	cmocucB1006
CmoCh07G006580	Watermelon (97103) v2	cmowmbB872
CmoCh07G006580	Watermelon (97103) v2	cmowmbB876
CmoCh07G006580	Wax gourd	cmowgoB1044
CmoCh07G006580	Wax gourd	cmowgoB1078
CmoCh07G006580	Cucurbita moschata (Rifu)	cmocmoB037
CmoCh07G006580	Cucurbita moschata (Rifu)	cmocmoB164
CmoCh07G006580	Cucurbita moschata (Rifu)	cmocmoB296
CmoCh07G006580	Cucurbita moschata (Rifu)	cmocmoB376
CmoCh07G006580	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh07G006580	Cucurbita moschata (Rifu)	cmocmoB477