Carg00789 (gene) Silver-seed gourd

Overview
NameCarg00789
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosomal protein L26
LocationCucurbita_argyrosperma_scaffold_014 : 1468989 .. 1469429 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATCGTAAAAAGTGGGTTATCCATATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTCAATGTTGGTATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCTCTGATAAGGACAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTAA

mRNA sequence

ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATCGTAAAAAGTGGGTTATCCATATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTCAATGTTGGTATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCTCTGATAAGGACAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTAA

Coding sequence (CDS)

ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATCGTAAAAAGTGGGTTATCCATATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTCAATGTTGGTATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGCGCCGCCTCTGATAAGGACAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTAA

Protein sequence

MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD
Homology
[Close]
BLAST of Carg00789 vs. NCBI nr
Match: XP_022950899.1 (60S ribosomal protein L26-1 [Cucurbita moschata] >XP_022978626.1 60S ribosomal protein L26-1 [Cucurbita maxima] >XP_023543127.1 60S ribosomal protein L26-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.5 bits (711), Expect = 1.3e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           KGKGRAASDKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Carg00789 vs. NCBI nr
Match: XP_004141862.1 (PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus] >XP_008440392.1 PREDICTED: 60S ribosomal protein L26-1 [Cucumis melo] >KGN48613.1 hypothetical protein Csa_6G495670 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 4.2e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Carg00789 vs. NCBI nr
Match: XP_022963400.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023003724.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023517131.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.7 bits (696), Expect = 7.2e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLS DLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSNDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           KGKGRAA+DKDKGTKF+AEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]
BLAST of Carg00789 vs. NCBI nr
Match: XP_022132426.1 (60S ribosomal protein L26-1 [Momordica charantia])

HSP 1 Score: 271.6 bits (693), Expect = 1.6e-69
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRRVIMS+PLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVIMSSPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Carg00789 vs. NCBI nr
Match: XP_016720131.1 (PREDICTED: 60S ribosomal protein L26-1 [Gossypium hirsutum] >XP_017623657.1 PREDICTED: 60S ribosomal protein L26-1 [Gossypium arboreum] >PPD90443.1 hypothetical protein GOBAR_DD12629 [Gossypium barbadense] >PPR91561.1 hypothetical protein GOBAR_AA29119 [Gossypium barbadense])

HSP 1 Score: 270.0 bits (689), Expect = 4.7e-69
Identity = 139/146 (95.21%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLSTDLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSTDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKF+AEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]
BLAST of Carg00789 vs. TAIR10
Match: AT3G49910.1 (Translation protein SH3-like family protein)

HSP 1 Score: 252.7 bits (644), Expect = 1.4e-67
Identity = 128/146 (87.67%), Postives = 141/146 (96.58%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]
BLAST of Carg00789 vs. TAIR10
Match: AT5G67510.1 (Translation protein SH3-like family protein)

HSP 1 Score: 244.2 bits (622), Expect = 5.0e-65
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYR+KWVIHIERITREKVNGSTVNVG+N S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K  GRAA+DK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]
BLAST of Carg00789 vs. Swiss-Prot
Match: sp|P51414|RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2)

HSP 1 Score: 252.7 bits (644), Expect = 2.5e-66
Identity = 128/146 (87.67%), Postives = 141/146 (96.58%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]
BLAST of Carg00789 vs. Swiss-Prot
Match: sp|Q9FJX2|RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.0e-64
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYR+KWVIHIERITREKVNGSTVNVG+N S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K  GRAA+DK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]
BLAST of Carg00789 vs. Swiss-Prot
Match: sp|Q39411|RL26_BRACM (60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-60
Identity = 118/145 (81.38%), Postives = 134/145 (92.41%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRR++RK HF+A SS RRV MS+PLSTDLR KYNVRSMPIRKDDE Q+VRG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGK+ QVYR+K VIHIER+TREKVNG+TVNVG+ P+KVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSV 146
           K KGRAA+DKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]
BLAST of Carg00789 vs. Swiss-Prot
Match: sp|P61257|RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 98/142 (69.01%), Postives = 119/142 (83.80%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYRKK+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAASDKDKGTKFTAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]
BLAST of Carg00789 vs. Swiss-Prot
Match: sp|P61254|RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens OX=9606 GN=RPL26 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 98/142 (69.01%), Postives = 119/142 (83.80%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYRKK+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAASDKDKGTKFTAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]
BLAST of Carg00789 vs. TrEMBL
Match: tr|A0A1S3B106|A0A1S3B106_CUCME (60S ribosomal protein L26-1 OS=Cucumis melo OX=3656 GN=LOC103484854 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.8e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Carg00789 vs. TrEMBL
Match: tr|A0A0A0KGI0|A0A0A0KGI0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495670 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.8e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]
BLAST of Carg00789 vs. TrEMBL
Match: tr|A0A2P5RUI9|A0A2P5RUI9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29119 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.1e-69
Identity = 139/146 (95.21%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLSTDLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSTDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKF+AEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]
BLAST of Carg00789 vs. TrEMBL
Match: tr|A0A1U8LZY4|A0A1U8LZY4_GOSHI (60S ribosomal protein L26-1 OS=Gossypium hirsutum OX=3635 GN=LOC107932587 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.1e-69
Identity = 139/146 (95.21%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLSTDLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSTDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKF+AEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFSAEDIMQSVD 146

[Close]
BLAST of Carg00789 vs. TrEMBL
Match: tr|A0A1R3I630|A0A1R3I630_COCAP (Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Corchorus capsularis OX=210143 GN=CCACVL1_14727 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 4.0e-69
Identity = 138/146 (94.52%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRR++MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

The following BLAST results are available for this feature:
BLAST of Carg00789 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022950899.11.3e-71100.0060S ribosomal protein L26-1 [Cucurbita moschata] >XP_022978626.1 60S ribosomal p... [more]
XP_004141862.14.2e-7097.26PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus] >XP_008440392.1 PREDICT... [more]
XP_022963400.17.2e-7097.2660S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023003724.1 60S riboso... [more]
XP_022132426.11.6e-6996.5860S ribosomal protein L26-1 [Momordica charantia][more]
XP_016720131.14.7e-6995.21PREDICTED: 60S ribosomal protein L26-1 [Gossypium hirsutum] >XP_017623657.1 PRED... [more]
BLAST of Carg00789 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49910.11.4e-6787.67Translation protein SH3-like family protein[more]
AT5G67510.15.0e-6583.56Translation protein SH3-like family protein[more]
BLAST of Carg00789 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P51414|RL261_ARATH2.5e-6687.6760S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2[more]
sp|Q9FJX2|RL262_ARATH9.0e-6483.5660S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1[more]
sp|Q39411|RL26_BRACM1.6e-6081.3860S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1[more]
sp|P61257|RL26_BOVIN1.6e-4469.0160S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1[more]
sp|P61254|RL26_HUMAN1.6e-4469.0160S ribosomal protein L26 OS=Homo sapiens OX=9606 GN=RPL26 PE=1 SV=1[more]
BLAST of Carg00789 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B106|A0A1S3B106_CUCME2.8e-7097.2660S ribosomal protein L26-1 OS=Cucumis melo OX=3656 GN=LOC103484854 PE=4 SV=1[more]
tr|A0A0A0KGI0|A0A0A0KGI0_CUCSA2.8e-7097.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495670 PE=4 SV=1[more]
tr|A0A2P5RUI9|A0A2P5RUI9_GOSBA3.1e-6995.21Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29119 PE=3 SV... [more]
tr|A0A1U8LZY4|A0A1U8LZY4_GOSHI3.1e-6995.2160S ribosomal protein L26-1 OS=Gossypium hirsutum OX=3635 GN=LOC107932587 PE=3 S... [more]
tr|A0A1R3I630|A0A1R3I630_COCAP4.0e-6994.52Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Corchorus capsularis OX=21014... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR005825Ribosomal_L24/26_CS
IPR005756Ribosomal_L26/L24P_euk/arc
IPR014722Rib_L2_dom2
IPR005824KOW
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00789-RACarg00789-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 48..75
e-value: 4.5E-6
score: 36.2
IPR005824KOWPFAMPF00467KOWcoord: 51..82
e-value: 8.2E-10
score: 38.2
IPR014722Ribosomal protein L2, domain 2GENE3DG3DSA:2.30.30.30coord: 1..144
e-value: 5.0E-58
score: 197.1
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealPFAMPF16906Ribosomal_L26coord: 8..121
e-value: 1.7E-38
score: 130.9
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealTIGRFAMTIGR01080TIGR01080coord: 8..122
e-value: 1.7E-51
score: 171.4
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealPANTHERPTHR1114360S RIBOSOMAL PROTEIN L26 FAMILY MEMBERcoord: 1..146
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealHAMAPMF_01326_ARibosomal_L24_Acoord: 9..121
score: 20.585
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..146
NoneNo IPR availablePANTHERPTHR11143:SF1360S RIBOSOMAL PROTEIN L26-1-RELATEDcoord: 1..146
NoneNo IPR availableCDDcd06089KOW_RPL26coord: 52..105
e-value: 7.15907E-15
score: 64.4582
IPR005825Ribosomal protein L24/L26, conserved sitePROSITEPS01108RIBOSOMAL_L24coord: 52..69
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 8..125

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00789Cla014030Watermelon (97103) v1carwmB0407
Carg00789Csa6G495670Cucumber (Chinese Long) v2carcuB0441
Carg00789MELO3C007635Melon (DHL92) v3.5.1carmeB0414
Carg00789ClCG01G017590Watermelon (Charleston Gray)carwcgB0397
Carg00789CSPI06G28920Wild cucumber (PI 183967)carcpiB0446
Carg00789Cucsa.103210Cucumber (Gy14) v1carcgyB0467
Carg00789CmaCh03G009150Cucurbita maxima (Rimu)carcmaB0567
Carg00789CmaCh20G010150Cucurbita maxima (Rimu)carcmaB0566
Carg00789CmoCh07G006580Cucurbita moschata (Rifu)carcmoB0554
Carg00789Lsi01G008930Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00789Cp4.1LG10g02120Cucurbita pepo (Zucchini)carcpeB0554
Carg00789Cp4.1LG19g10590Cucurbita pepo (Zucchini)carcpeB0563
Carg00789Cp4.1LG05g11350Cucurbita pepo (Zucchini)carcpeB0568
Carg00789CsGy6G028390Cucumber (Gy14) v2carcgybB0418
Carg00789MELO3C007635.2Melon (DHL92) v3.6.1carmedB0418
Carg00789CsaV3_6G044130Cucumber (Chinese Long) v3carcucB0442
Carg00789Cla97C01G016760Watermelon (97103) v2carwmbB0426
Carg00789Bhi03G000794Wax gourdcarwgoB0491
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00789Carg18547Silver-seed gourdcarcarB001
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00789Silver-seed gourdcarcarB344
Carg00789Silver-seed gourdcarcarB401
Carg00789Silver-seed gourdcarcarB423
Carg00789Silver-seed gourdcarcarB427
Carg00789Cucumber (Gy14) v2carcgybB0409
Carg00789Cucumber (Gy14) v2carcgybB0417
Carg00789Cucumber (Gy14) v1carcgyB0474
Carg00789Cucumber (Gy14) v1carcgyB0475
Carg00789Cucurbita maxima (Rimu)carcmaB0555
Carg00789Cucurbita maxima (Rimu)carcmaB0557
Carg00789Cucurbita maxima (Rimu)carcmaB0563
Carg00789Cucurbita maxima (Rimu)carcmaB0571
Carg00789Cucurbita moschata (Rifu)carcmoB0542
Carg00789Cucurbita moschata (Rifu)carcmoB0545
Carg00789Cucurbita moschata (Rifu)carcmoB0548
Carg00789Cucurbita moschata (Rifu)carcmoB0551
Carg00789Cucurbita pepo (Zucchini)carcpeB0567
Carg00789Cucurbita pepo (Zucchini)carcpeB0570
Carg00789Cucurbita pepo (Zucchini)carcpeB0573
Carg00789Wild cucumber (PI 183967)carcpiB0436
Carg00789Wild cucumber (PI 183967)carcpiB0445
Carg00789Cucumber (Chinese Long) v2carcuB0431
Carg00789Cucumber (Chinese Long) v2carcuB0440
Carg00789Cucumber (Chinese Long) v3carcucB0433
Carg00789Cucumber (Chinese Long) v3carcucB0441
Carg00789Bottle gourd (USVL1VR-Ls)carlsiB365
Carg00789Bottle gourd (USVL1VR-Ls)carlsiB372
Carg00789Melon (DHL92) v3.5.1carmeB0406
Carg00789Melon (DHL92) v3.5.1carmeB0411
Carg00789Melon (DHL92) v3.6.1carmedB0410
Carg00789Melon (DHL92) v3.6.1carmedB0415
Carg00789Watermelon (Charleston Gray)carwcgB0403
Carg00789Watermelon (Charleston Gray)carwcgB0399
Carg00789Watermelon (97103) v1carwmB0400
Carg00789Watermelon (97103) v1carwmB0404
Carg00789Watermelon (97103) v2carwmbB0429
Carg00789Watermelon (97103) v2carwmbB0433
Carg00789Wax gourdcarwgoB0487
Carg00789Wax gourdcarwgoB0494