CmaCh03G009150 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G009150
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein L26, component of cytosolic 80S ribosome and 60S large subunit
Location	Cma_Chr03 : 6625048 .. 6625488 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATCGTAAAAAGTGGGTTATCCACATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTTAATGTTGGCATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGTGCCGCCTCTGATAAGGACAAGGGCACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTAA

mRNA sequence

ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATCGTAAAAAGTGGGTTATCCACATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTTAATGTTGGCATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGTGCCGCCTCTGATAAGGACAAGGGCACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTAA

Coding sequence (CDS)

ATGAAGTACAATCCTAGGGTTTCCAGTTCCCGCCGCAAGAGCCGTAAGGCTCATTTTTCGGCGCCGTCGAGCGTTCGTCGGGTTATTATGAGTGCTCCTCTCTCGACTGACCTCCGGTCAAAGTACAACGTCCGATCCATGCCGATTCGGAAGGATGATGAGGTCCAAGTTGTCCGTGGAACTTACAAGGGTCGGGAGGGCAAGGTAGTGCAGGTGTATCGTAAAAAGTGGGTTATCCACATCGAGCGCATCACTCGCGAAAAGGTTAACGGTTCCACTGTTAATGTTGGCATCAACCCCTCGAAGGTCGTGATTACGAAGCTCAGGCTGGACAAGGACCGCAAGTCACTTCTGGATCGTAAAGGCAAGGGCCGTGCCGCCTCTGATAAGGACAAGGGCACCAAGTTCACCGCCGAGGATATCATGCAGAGCGTCGACTAA

Protein sequence

MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKGKGRAASDKDKGTKFTAEDIMQSVD

Homology

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BLAST of CmaCh03G009150 vs. Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 252.7 bits (644), Expect = 2.5e-66
Identity = 128/146 (87.67%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of CmaCh03G009150 vs. Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.8e-64
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYR+KWVIHIERITREKVNGSTVNVG+N S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K  GRAA+DK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of CmaCh03G009150 vs. Swiss-Prot
Match: RL26_BRACM (60S ribosomal protein L26 OS=Brassica campestris GN=RPL26 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-60
Identity = 118/145 (81.38%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRR++RK HF+A SS RRV MS+PLSTDLR KYNVRSMPIRKDDE Q+VRG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGK+ QVYR+K VIHIER+TREKVNG+TVNVG+ P+KVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSV 146
           K KGRAA+DKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]

BLAST of CmaCh03G009150 vs. Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 98/142 (69.01%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYRKK+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAASDKDKGTKFTAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]

BLAST of CmaCh03G009150 vs. Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 98/142 (69.01%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NP V+S R K+RK HF+APS +RR IMS+PLS +LR KYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLD 120
            YKG++ GKVVQVYRKK+VI+IER+ REK NG+TV+VGI+PSKVVIT+L+LDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKGKGRAASDKDKGTKFTAEDI 142
           RK K R    K+KG K+  E I
Sbjct: 121 RKAKSRQVG-KEKG-KYKEETI 140

[Close]

BLAST of CmaCh03G009150 vs. TrEMBL
Match: A0A0A0KGI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495670 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.5e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmaCh03G009150 vs. TrEMBL
Match: W9RS71_9ROSA (60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009395 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.7e-69
Identity = 139/146 (95.21%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmaCh03G009150 vs. TrEMBL
Match: A5AQ64_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g00090 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.9e-69
Identity = 138/146 (94.52%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLSTDLRSKYN RSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSTDLRSKYNARSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKVVQVYR+KWVIH+ERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TFKGREGKVVQVYRRKWVIHVERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmaCh03G009150 vs. TrEMBL
Match: A0A0D2QXM5_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_007G223100 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.9e-69
Identity = 138/146 (94.52%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 39  MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 98

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 99  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 158

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKF+AEDIMQSVD
Sbjct: 159 KAKGRAAADKDKGTKFSAEDIMQSVD 184

[Close]

BLAST of CmaCh03G009150 vs. TrEMBL
Match: A0A061F5L5_THECC (Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_025183 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.9e-69
Identity = 137/146 (93.84%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR++MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmaCh03G009150 vs. TAIR10
Match: AT3G49910.1 (AT3G49910.1 Translation protein SH3-like family protein)

HSP 1 Score: 252.7 bits (644), Expect = 1.4e-67
Identity = 128/146 (87.67%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRVIMS+PLSTDLR KYNVRSMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNG+TVNVGI PSKVVITKLRLDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of CmaCh03G009150 vs. TAIR10
Match: AT5G67510.1 (AT5G67510.1 Translation protein SH3-like family protein)

HSP 1 Score: 244.2 bits (622), Expect = 5.0e-65
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRV+MS+PLS DLR+K+NVRSMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKV+QVYR+KWVIHIERITREKVNGSTVNVG+N S V+ITKLRLDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K  GRAA+DK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of CmaCh03G009150 vs. NCBI nr
Match: gi|449448216|ref|XP_004141862.1| (PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 2.2e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KW+IHIERITREKVNGSTVNVGI PSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           KGKGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmaCh03G009150 vs. NCBI nr
Match: gi|703123225|ref|XP_010102767.1| (60S ribosomal protein L26-1 [Morus notabilis])

HSP 1 Score: 268.9 bits (686), Expect = 5.4e-69
Identity = 139/146 (95.21%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmaCh03G009150 vs. NCBI nr
Match: gi|225439002|ref|XP_002284455.1| (PREDICTED: 60S ribosomal protein L26-1 [Vitis vinifera])

HSP 1 Score: 268.5 bits (685), Expect = 7.0e-69
Identity = 138/146 (94.52%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLSTDLRSKYN RSMPIRKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSTDLRSKYNARSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           T+KGREGKVVQVYR+KWVIH+ERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TFKGREGKVVQVYRRKWVIHVERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmaCh03G009150 vs. NCBI nr
Match: gi|802645921|ref|XP_012079404.1| (PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas])

HSP 1 Score: 268.5 bits (685), Expect = 7.0e-69
Identity = 137/146 (93.84%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR++MSAPLSTDLR KYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmaCh03G009150 vs. NCBI nr
Match: gi|823193080|ref|XP_012491962.1| (PREDICTED: 60S ribosomal protein L26-1 [Gossypium raimondii])

HSP 1 Score: 268.5 bits (685), Expect = 7.0e-69
Identity = 138/146 (94.52%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRV+MSAPLS+DLRSKYNVRSMP+RKDDEVQVVRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120
           TYKGREGKVVQVYR+KWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KGKGRAASDKDKGTKFTAEDIMQSVD 147
           K KGRAA+DKDKGTKF+AEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFSAEDIMQSVD 146

The following BLAST results are available for this feature:

BLAST of CmaCh03G009150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL261_ARATH	2.5e-66	87.67	60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2	[more]
RL262_ARATH	8.8e-64	83.56	60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1	[more]
RL26_BRACM	1.6e-60	81.38	60S ribosomal protein L26 OS=Brassica campestris GN=RPL26 PE=2 SV=1	[more]
RL26_HUMAN	1.6e-44	69.01	60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1	[more]
RL26_BOVIN	1.6e-44	69.01	60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1	[more]

BLAST of CmaCh03G009150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGI0_CUCSA	1.5e-70	97.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495670 PE=4 SV=1	[more]
W9RS71_9ROSA	3.7e-69	95.21	60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009395 PE=3 SV=1	[more]
A5AQ64_VITVI	4.9e-69	94.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g00090 PE=3 SV=...	[more]
A0A0D2QXM5_GOSRA	4.9e-69	94.52	Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_007G223100 PE=...	[more]
A0A061F5L5_THECC	4.9e-69	93.84	Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_025183 PE=...	[more]

BLAST of CmaCh03G009150 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49910.1	1.4e-67	87.67	Translation protein SH3-like family protein	[more]
AT5G67510.1	5.0e-65	83.56	Translation protein SH3-like family protein	[more]

BLAST of CmaCh03G009150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448216\|ref\|XP_004141862.1\|	2.2e-70	97.26	PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus]	[more]
gi\|703123225\|ref\|XP_010102767.1\|	5.4e-69	95.21	60S ribosomal protein L26-1 [Morus notabilis]	[more]
gi\|225439002\|ref\|XP_002284455.1\|	7.0e-69	94.52	PREDICTED: 60S ribosomal protein L26-1 [Vitis vinifera]	[more]
gi\|802645921\|ref\|XP_012079404.1\|	7.0e-69	93.84	PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]	[more]
gi\|823193080\|ref\|XP_012491962.1\|	7.0e-69	94.52	PREDICTED: 60S ribosomal protein L26-1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005756	Ribosomal_L26/L24P_euk/arc
IPR005824	KOW
IPR005825	Ribosomal_L24/26_CS
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0015934	large ribosomal subunit
GO:0005622	intracellular
GO:0005840	ribosome

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G009150.1	CmaCh03G009150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	HAMAP	MF_01326_A	Ribosomal_L24_A	coord: 9..121 score: 20
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 2..146 score: 4.4E
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 score: 1.5
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	TIGRFAMs	TIGR01080	TIGR01080	coord: 8..122 score: 1.7
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 score: 8.6
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 score: 4.
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69 scor
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 8..125 score: 6.88
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 7..125 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G009150	Cucsa.103210	Cucumber (Gy14) v1	cgycmaB0231
CmaCh03G009150	Cla014030	Watermelon (97103) v1	cmawmB632
CmaCh03G009150	Csa6G495670	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G009150	MELO3C007635	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G009150	ClCG01G017590	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G009150	CSPI06G28920	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G009150	CmoCh07G006580	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G009150	Lsi01G008930	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G009150	Cp4.1LG10g02120	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G009150	Cp4.1LG19g10590	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G009150	MELO3C007635.2	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G009150	CsaV3_6G044130	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G009150	Cla97C01G016760	Watermelon (97103) v2	cmawmbB670
CmaCh03G009150	Bhi03G000794	Wax gourd	cmawgoB0798
CmaCh03G009150	CsGy6G028390	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G009150	Carg00789	Silver-seed gourd	carcmaB0567
CmaCh03G009150	Carg18547	Silver-seed gourd	carcmaB0003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G009150	Cucurbita pepo (Zucchini)	cmacpeB684
CmaCh03G009150	Bottle gourd (USVL1VR-Ls)	cmalsiB613
CmaCh03G009150	Bottle gourd (USVL1VR-Ls)	cmalsiB621
CmaCh03G009150	Cucumber (Gy14) v2	cgybcmaB241
CmaCh03G009150	Cucumber (Gy14) v2	cgybcmaB536
CmaCh03G009150	Melon (DHL92) v3.6.1	cmamedB680
CmaCh03G009150	Melon (DHL92) v3.6.1	cmamedB691
CmaCh03G009150	Silver-seed gourd	carcmaB0633
CmaCh03G009150	Silver-seed gourd	carcmaB1070
CmaCh03G009150	Cucumber (Chinese Long) v3	cmacucB0778
CmaCh03G009150	Cucumber (Chinese Long) v3	cmacucB0800
CmaCh03G009150	Watermelon (97103) v2	cmawmbB696
CmaCh03G009150	Watermelon (97103) v2	cmawmbB701
CmaCh03G009150	Wax gourd	cmawgoB0781
CmaCh03G009150	Wax gourd	cmawgoB0811
CmaCh03G009150	Cucurbita maxima (Rimu)	cmacmaB063
CmaCh03G009150	Cucurbita maxima (Rimu)	cmacmaB186
CmaCh03G009150	Cucurbita maxima (Rimu)	cmacmaB421
CmaCh03G009150	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G009150	Cucumber (Gy14) v1	cgycmaB0966
CmaCh03G009150	Cucumber (Gy14) v1	cgycmaB1092
CmaCh03G009150	Cucurbita moschata (Rifu)	cmacmoB632
CmaCh03G009150	Cucurbita moschata (Rifu)	cmacmoB634
CmaCh03G009150	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G009150	Wild cucumber (PI 183967)	cmacpiB658
CmaCh03G009150	Wild cucumber (PI 183967)	cmacpiB680
CmaCh03G009150	Cucumber (Chinese Long) v2	cmacuB651
CmaCh03G009150	Cucumber (Chinese Long) v2	cmacuB671
CmaCh03G009150	Melon (DHL92) v3.5.1	cmameB596
CmaCh03G009150	Melon (DHL92) v3.5.1	cmameB607
CmaCh03G009150	Watermelon (Charleston Gray)	cmawcgB597
CmaCh03G009150	Watermelon (Charleston Gray)	cmawcgB603
CmaCh03G009150	Watermelon (97103) v1	cmawmB619
CmaCh03G009150	Watermelon (97103) v1	cmawmB627