CsaV3_7G010110 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G010110
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	pentatricopeptide repeat-containing protein At2g15630, mitochondrial
Location	chr7 : 5706252 .. 5708138 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCTTGCAGAATTCCGAAGCTTTCTTCTCTGAAGCTCAAGCCTTTCTCTTCAATTTCTCTCCAAAAAACTCCACTGGAATCTCCTGTTTCAACCACAAACCTCGCTTCGCCTCTAACCCCTCATTTTCTCGAACAATCAGCCCGCTCCTCTCAGTGGCATTTCATCAAGCAGGTAGAGTCCTCTCTTACTCCCTCTCTTATCTCCCAAACCCTTCTAAACCTCCACGAATCTCCACAGGTTGTTCTCGATTTCTTAAACCATTTTCACCATAAACTATCTGATGCCCGAACTCTTTGCCTTGCCATTGTCATTGTTGCTCGTCTTCCATCTCCCAAACCCGCCTTACACCTTCTCAAACAGGCTCTTGGGGGTGGCACTACCAATTCAATTAGGGAGATTTTTGAATTCTTAGCTGCTTCTCGTGATCGTTTGGGTTTCAAAAGTAGCATTGTTTTTGATTACTTGATTAAGTCTTGCTGTGACATGAATAGGGCAGATGAGGCTTTTGAATGTTTTTACACTATGAAGGAAAAGGGTGTCTTACCTACCATTGAGACTTGCAACAGTTTGCTGAGTTTGTTTCTGAAGTTGAATAGAACTGAGGCAGCTTGGGTTTTGTATGCTGAGATGTTTAGATTGAGAATTAAATCTAGCGTTTATACGTTCAACATTATGATTAATGTTCTATGCAAAGAGGGGAAGTTGAAGAAGGCTAAGGATTTCGTTGGGCATATGGAGACTTCAGGGGTTAAACCGAATATCGTTACTTACAATACGATTGTTCATGGATATTGTTCGAGCGGAAGAGTTGAAGCGGCTGATGCTATTTTGACTACTATGAAGAGACAAAAGATTGAACCTGATTCTTTCACATATGGATCTCTTATCAGTGGGATGTGCAAGCAAGGAAGACTTGAAGAAGCATCAAAGATTTTTGAAGAAATGGTTCAAAAGGGGTTGCGACCTAGTGCTGTAATTTATAATACTTTGATTGATGGATTTTGTAATAAGGGTAATTTGGATATGGCCTCTGCTTACAAGGATGAGATGTTGAAGAAGGGCATAAGTCCAACCATGTCAACTTATAACTCGTTGATTCATGCATTGTTTATGGAGCAAAGAACAGATGAAGCTGAATGTATGATCAAAGAAATTCAGGAGAAAGGAATATCTCCTGATGCTATTACATATAATATCTTGATAAATGGGTATTGTAGATGTGCAAATGCAAAGAAAGCATTTCTTCTACATGATGAAATGTTGGCGAGTGGTATTAAGCCGACAAAAAAGACATACACATCACTTCTTCATGTTTTGAGCAAAAAGAACAGAATGAAGGAGGCAGATGATTTGTTTAAGAAGATCACAAGTGAAGGTGTGTTGCCTGATGTCATTATGTTTAATGCTTTGATTGATGGTCATTGTTCTAACAGTAATGTCAAGGGTGCATTTGAGCTTCTGAAAGATATGGATAGGATGAAGGTTCCACCCGATGAAGTGACTTTCAATACCATAATGCAAGGCCATTGCAGGGAAGGAAAAGTTGAAGAAGCCCGTGAACTTTTTGACGAGATGAAGAGAAGAGGGATTAAGCCCGACCATATTAGTTTCAATACACTGATTAGTGGTTATAGTAGACGAGGAGACATAAAGGATGCTTTCAGAGTACGGAATGAGATGCTTGATACAGGATTCAATCCGACTGTTCTAACTTATAATGCCCTTGTACAAGGGTTATGCAAAAACCAAGAAGGTGATCTTGCTGAAGAGCTTCTTAAAGAAATGGTAAGTAAAGGAATGACACCTGATGATACTACTTATTTCACATTGATTGAAGGTATTGCAAAAGTTAACATTCCAGATGAAAACAAGAACACATAA

mRNA sequence

ATGATTCCTTGCAGAATTCCGAAGCTTTCTTCTCTGAAGCTCAAGCCTTTCTCTTCAATTTCTCTCCAAAAAACTCCACTGGAATCTCCTGTTTCAACCACAAACCTCGCTTCGCCTCTAACCCCTCATTTTCTCGAACAATCAGCCCGCTCCTCTCAGTGGCATTTCATCAAGCAGGTAGAGTCCTCTCTTACTCCCTCTCTTATCTCCCAAACCCTTCTAAACCTCCACGAATCTCCACAGGTTGTTCTCGATTTCTTAAACCATTTTCACCATAAACTATCTGATGCCCGAACTCTTTGCCTTGCCATTGTCATTGTTGCTCGTCTTCCATCTCCCAAACCCGCCTTACACCTTCTCAAACAGGCTCTTGGGGGTGGCACTACCAATTCAATTAGGGAGATTTTTGAATTCTTAGCTGCTTCTCGTGATCGTTTGGGTTTCAAAAGTAGCATTGTTTTTGATTACTTGATTAAGTCTTGCTGTGACATGAATAGGGCAGATGAGGCTTTTGAATGTTTTTACACTATGAAGGAAAAGGGTGTCTTACCTACCATTGAGACTTGCAACAGTTTGCTGAGTTTGTTTCTGAAGTTGAATAGAACTGAGGCAGCTTGGGTTTTGTATGCTGAGATGTTTAGATTGAGAATTAAATCTAGCGTTTATACGTTCAACATTATGATTAATGTTCTATGCAAAGAGGGGAAGTTGAAGAAGGCTAAGGATTTCGTTGGGCATATGGAGACTTCAGGGGTTAAACCGAATATCGTTACTTACAATACGATTGTTCATGGATATTGTTCGAGCGGAAGAGTTGAAGCGGCTGATGCTATTTTGACTACTATGAAGAGACAAAAGATTGAACCTGATTCTTTCACATATGGATCTCTTATCAGTGGGATGTGCAAGCAAGGAAGACTTGAAGAAGCATCAAAGATTTTTGAAGAAATGGTTCAAAAGGGGTTGCGACCTAGTGCTGTAATTTATAATACTTTGATTGATGGATTTTGTAATAAGGGTAATTTGGATATGGCCTCTGCTTACAAGGATGAGATGTTGAAGAAGGGCATAAGTCCAACCATGTCAACTTATAACTCGTTGATTCATGCATTGTTTATGGAGCAAAGAACAGATGAAGCTGAATGTATGATCAAAGAAATTCAGGAGAAAGGAATATCTCCTGATGCTATTACATATAATATCTTGATAAATGGGTATTGTAGATGTGCAAATGCAAAGAAAGCATTTCTTCTACATGATGAAATGTTGGCGAGTGGTATTAAGCCGACAAAAAAGACATACACATCACTTCTTCATGTTTTGAGCAAAAAGAACAGAATGAAGGAGGCAGATGATTTGTTTAAGAAGATCACAAGTGAAGGTGTGTTGCCTGATGTCATTATGTTTAATGCTTTGATTGATGGTCATTGTTCTAACAGTAATGTCAAGGGTGCATTTGAGCTTCTGAAAGATATGGATAGGATGAAGGTTCCACCCGATGAAGTGACTTTCAATACCATAATGCAAGGCCATTGCAGGGAAGGAAAAGTTGAAGAAGCCCGTGAACTTTTTGACGAGATGAAGAGAAGAGGGATTAAGCCCGACCATATTAGTTTCAATACACTGATTAGTGGTTATAGTAGACGAGGAGACATAAAGGATGCTTTCAGAGTACGGAATGAGATGCTTGATACAGGATTCAATCCGACTGTTCTAACTTATAATGCCCTTGTACAAGGGTTATGCAAAAACCAAGAAGGTGATCTTGCTGAAGAGCTTCTTAAAGAAATGGTAAGTAAAGGAATGACACCTGATGATACTACTTATTTCACATTGATTGAAGGTATTGCAAAAGTTAACATTCCAGATGAAAACAAGAACACATAA

Coding sequence (CDS)

ATGATTCCTTGCAGAATTCCGAAGCTTTCTTCTCTGAAGCTCAAGCCTTTCTCTTCAATTTCTCTCCAAAAAACTCCACTGGAATCTCCTGTTTCAACCACAAACCTCGCTTCGCCTCTAACCCCTCATTTTCTCGAACAATCAGCCCGCTCCTCTCAGTGGCATTTCATCAAGCAGGTAGAGTCCTCTCTTACTCCCTCTCTTATCTCCCAAACCCTTCTAAACCTCCACGAATCTCCACAGGTTGTTCTCGATTTCTTAAACCATTTTCACCATAAACTATCTGATGCCCGAACTCTTTGCCTTGCCATTGTCATTGTTGCTCGTCTTCCATCTCCCAAACCCGCCTTACACCTTCTCAAACAGGCTCTTGGGGGTGGCACTACCAATTCAATTAGGGAGATTTTTGAATTCTTAGCTGCTTCTCGTGATCGTTTGGGTTTCAAAAGTAGCATTGTTTTTGATTACTTGATTAAGTCTTGCTGTGACATGAATAGGGCAGATGAGGCTTTTGAATGTTTTTACACTATGAAGGAAAAGGGTGTCTTACCTACCATTGAGACTTGCAACAGTTTGCTGAGTTTGTTTCTGAAGTTGAATAGAACTGAGGCAGCTTGGGTTTTGTATGCTGAGATGTTTAGATTGAGAATTAAATCTAGCGTTTATACGTTCAACATTATGATTAATGTTCTATGCAAAGAGGGGAAGTTGAAGAAGGCTAAGGATTTCGTTGGGCATATGGAGACTTCAGGGGTTAAACCGAATATCGTTACTTACAATACGATTGTTCATGGATATTGTTCGAGCGGAAGAGTTGAAGCGGCTGATGCTATTTTGACTACTATGAAGAGACAAAAGATTGAACCTGATTCTTTCACATATGGATCTCTTATCAGTGGGATGTGCAAGCAAGGAAGACTTGAAGAAGCATCAAAGATTTTTGAAGAAATGGTTCAAAAGGGGTTGCGACCTAGTGCTGTAATTTATAATACTTTGATTGATGGATTTTGTAATAAGGGTAATTTGGATATGGCCTCTGCTTACAAGGATGAGATGTTGAAGAAGGGCATAAGTCCAACCATGTCAACTTATAACTCGTTGATTCATGCATTGTTTATGGAGCAAAGAACAGATGAAGCTGAATGTATGATCAAAGAAATTCAGGAGAAAGGAATATCTCCTGATGCTATTACATATAATATCTTGATAAATGGGTATTGTAGATGTGCAAATGCAAAGAAAGCATTTCTTCTACATGATGAAATGTTGGCGAGTGGTATTAAGCCGACAAAAAAGACATACACATCACTTCTTCATGTTTTGAGCAAAAAGAACAGAATGAAGGAGGCAGATGATTTGTTTAAGAAGATCACAAGTGAAGGTGTGTTGCCTGATGTCATTATGTTTAATGCTTTGATTGATGGTCATTGTTCTAACAGTAATGTCAAGGGTGCATTTGAGCTTCTGAAAGATATGGATAGGATGAAGGTTCCACCCGATGAAGTGACTTTCAATACCATAATGCAAGGCCATTGCAGGGAAGGAAAAGTTGAAGAAGCCCGTGAACTTTTTGACGAGATGAAGAGAAGAGGGATTAAGCCCGACCATATTAGTTTCAATACACTGATTAGTGGTTATAGTAGACGAGGAGACATAAAGGATGCTTTCAGAGTACGGAATGAGATGCTTGATACAGGATTCAATCCGACTGTTCTAACTTATAATGCCCTTGTACAAGGGTTATGCAAAAACCAAGAAGGTGATCTTGCTGAAGAGCTTCTTAAAGAAATGGTAAGTAAAGGAATGACACCTGATGATACTACTTATTTCACATTGATTGAAGGTATTGCAAAAGTTAACATTCCAGATGAAAACAAGAACACATAA

Protein sequence

MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQVESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENKNT

Homology

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BLAST of CsaV3_7G010110 vs. NCBI nr
Match: XP_004137128.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 3.1e-101
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV 60
           MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV
Sbjct: 1   MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV 60

Query: 61  ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 120
           ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL
Sbjct: 61  ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 120

Query: 121 KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 180
           KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK
Sbjct: 121 KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 180

Query: 181 GVLPTIETCNS 192
           GVLPTIETCNS
Sbjct: 181 GVLPTIETCNS 191

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BLAST of CsaV3_7G010110 vs. NCBI nr
Match: KGN43973.1 (hypothetical protein Csa_7G075050 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 3.1e-101
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV 60
           MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV
Sbjct: 1   MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV 60

Query: 61  ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 120
           ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL
Sbjct: 61  ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 120

Query: 121 KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 180
           KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK
Sbjct: 121 KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 180

Query: 181 GVLPTIETCNS 192
           GVLPTIETCNS
Sbjct: 181 GVLPTIETCNS 191

[Close]

BLAST of CsaV3_7G010110 vs. NCBI nr
Match: XP_008454892.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Cucumis melo])

HSP 1 Score: 343.6 bits (880), Expect = 1.4e-90
Identity = 172/191 (90.05%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV 60
           MIP RIPKLSSLKL PFSSISL  TPLESP S+TN ASPLTPHFLEQSARSSQWHFIKQV
Sbjct: 1   MIPYRIPKLSSLKLNPFSSISLHNTPLESPNSSTNAASPLTPHFLEQSARSSQWHFIKQV 60

Query: 61  ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 120
           ES+LTPSLISQTLLNLH+SPQ+VLDFLNH HHKL DA TLCLAIVIVARLPSPKPALHLL
Sbjct: 61  ESTLTPSLISQTLLNLHQSPQIVLDFLNHLHHKLPDAHTLCLAIVIVARLPSPKPALHLL 120

Query: 121 KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 180
           KQALGGGTTNSIREIFE LAASRDRLGFKSSIVFD+LIKSCCDMNRADEA ECFYTMKEK
Sbjct: 121 KQALGGGTTNSIREIFELLAASRDRLGFKSSIVFDHLIKSCCDMNRADEALECFYTMKEK 180

Query: 181 GVLPTIETCNS 192
           G+LP IETCN+
Sbjct: 181 GILPKIETCNN 191

[Close]

BLAST of CsaV3_7G010110 vs. NCBI nr
Match: XP_022136116.1 (pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Momordica charantia])

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-63
Identity = 138/203 (67.98%), Postives = 153/203 (75.37%), Query Frame = 0


Query: 1   MIPCRIPKLSSLKLK---------PFSSISLQKTPLE----SPVSTTNLASPLTPHFLEQ 60
           M P +    SSL  K         PFSSISLQKTP E    SP   TN   PLT +FLE+
Sbjct: 1   MNPYKFLNRSSLNFKTTTHCHSFAPFSSISLQKTPQETLSQSPNIPTNPILPLTHNFLEE 60

Query: 61  SARSSQWHFIKQVESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIV 120
           SARSSQWH IKQ+  +LTPSLISQTL NLHE+PQ+VLD LNH HH + DA + CLAIVIV
Sbjct: 61  SARSSQWHLIKQIVPNLTPSLISQTLQNLHETPQIVLDLLNHLHHGVIDAESRCLAIVIV 120

Query: 121 ARLPSPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRA 180
           ARLPSP+P+L LLK A+G GTT S+REIFE LA SRDRLG KSSIVFDYL+KSCC+MNRA
Sbjct: 121 ARLPSPRPSLQLLKLAVGSGTT-SVREIFEMLAISRDRLGVKSSIVFDYLVKSCCEMNRA 180

Query: 181 DEAFECFYTMKEKGVLPTIETCN 191
           DE FECFY MKEKGV P IETCN
Sbjct: 181 DEGFECFYMMKEKGVAPKIETCN 202

[Close]

BLAST of CsaV3_7G010110 vs. NCBI nr
Match: XP_022952975.1 (pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Cucurbita moschata])

HSP 1 Score: 248.4 bits (633), Expect = 6.3e-62
Identity = 137/199 (68.84%), Postives = 153/199 (76.88%), Query Frame = 0


Query: 5   RIPKLSSLKLKP---------FSSISLQKTP----LESPVSTTNLASPLTPHFLEQSARS 64
           +I KLSSL  +          FSSIS  KTP      SP STT   S LT + LE+ ARS
Sbjct: 5   KILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEKFARS 64

Query: 65  SQWHFIKQVESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLP 124
           SQWHFIKQVES+LTPSLIS+TL NLH+SPQ+VL+ LNH  H L D++T CLAIVIVARLP
Sbjct: 65  SQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIVARLP 124

Query: 125 SPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAF 184
           SPKP L LLKQA+G G TNS++EIFE LAASRDRLG KSSIVFDYLIKSCC++NRADEAF
Sbjct: 125 SPKPTLQLLKQAVGCG-TNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRADEAF 184

Query: 185 ECFYTMKEKGVLPTIETCN 191
           ECFY MKE GV P IETCN
Sbjct: 185 ECFYMMKENGVAPKIETCN 202

[Close]

BLAST of CsaV3_7G010110 vs. TAIR10
Match: AT2G15630.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-36
Identity = 79/190 (41.58%), Postives = 116/190 (61.05%), Query Frame = 0


Query: 2   IPCRI-PKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV 61
           +PC +  ++S L    +S  + + + L    +  ++  P+T   L +S RSSQWH ++ V
Sbjct: 6   VPCILRHRISILSGAGYSPAAARLSSLAQTSTPESVLPPITSEILLESIRSSQWHIVEHV 65

Query: 62  ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 121
              LTPSL+S TLL+L ++P +  +F+NH      D +T CLAI ++++L SPKP   LL
Sbjct: 66  ADKLTPSLVSTTLLSLVKTPNLAFNFVNHIDLYRLDFQTQCLAIAVISKLSSPKPVTQLL 125

Query: 122 KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 181
           K+ +     NSIR +F+ L  + DRL  KS+I+FD L++ CC +   DEA ECFY MKEK
Sbjct: 126 KEVV-TSRKNSIRNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEAIECFYLMKEK 185

Query: 182 GVLPTIETCN 191
           G  P  ETCN
Sbjct: 186 GFYPKTETCN 194

[Close]

BLAST of CsaV3_7G010110 vs. TAIR10
Match: AT4G26680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.1e-04
Identity = 35/143 (24.48%), Postives = 64/143 (44.76%), Query Frame = 0


Query: 52  SQWHFIKQVESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLP 111
           S W  + ++   L    +   LL + +   + L+F N    +   + +L    +++  L 
Sbjct: 67  SDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVLHTLT 126

Query: 112 SP---KPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRAD 171
                K A  +L+  L  G  +   ++F+ L  S  R    +  VFD L K+   + +  
Sbjct: 127 KNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSY-RECDSTPRVFDSLFKTFAHLKKFR 186

Query: 172 EAFECFYTMKEKGVLPTIETCNS 192
            A + F  MK+ G LPT+E+CN+
Sbjct: 187 NATDTFMQMKDYGFLPTVESCNA 208

[Close]

BLAST of CsaV3_7G010110 vs. Swiss-Prot
Match: sp|Q9ZQF1|PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g15630 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.4e-35
Identity = 79/190 (41.58%), Postives = 116/190 (61.05%), Query Frame = 0


Query: 2   IPCRI-PKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV 61
           +PC +  ++S L    +S  + + + L    +  ++  P+T   L +S RSSQWH ++ V
Sbjct: 6   VPCILRHRISILSGAGYSPAAARLSSLAQTSTPESVLPPITSEILLESIRSSQWHIVEHV 65

Query: 62  ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 121
              LTPSL+S TLL+L ++P +  +F+NH      D +T CLAI ++++L SPKP   LL
Sbjct: 66  ADKLTPSLVSTTLLSLVKTPNLAFNFVNHIDLYRLDFQTQCLAIAVISKLSSPKPVTQLL 125

Query: 122 KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 181
           K+ +     NSIR +F+ L  + DRL  KS+I+FD L++ CC +   DEA ECFY MKEK
Sbjct: 126 KEVV-TSRKNSIRNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEAIECFYLMKEK 185

Query: 182 GVLPTIETCN 191
           G  P  ETCN
Sbjct: 186 GFYPKTETCN 194

[Close]

BLAST of CsaV3_7G010110 vs. TrEMBL
Match: tr|A0A0A0K3C0|A0A0A0K3C0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075050 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 2.0e-101
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV 60
           MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV
Sbjct: 1   MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV 60

Query: 61  ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 120
           ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL
Sbjct: 61  ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 120

Query: 121 KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 180
           KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK
Sbjct: 121 KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 180

Query: 181 GVLPTIETCNS 192
           GVLPTIETCNS
Sbjct: 181 GVLPTIETCNS 191

[Close]

BLAST of CsaV3_7G010110 vs. TrEMBL
Match: tr|A0A1S3C0D3|A0A1S3C0D3_CUCME (pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495200 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 9.5e-91
Identity = 172/191 (90.05%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MIPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQV 60
           MIP RIPKLSSLKL PFSSISL  TPLESP S+TN ASPLTPHFLEQSARSSQWHFIKQV
Sbjct: 1   MIPYRIPKLSSLKLNPFSSISLHNTPLESPNSSTNAASPLTPHFLEQSARSSQWHFIKQV 60

Query: 61  ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 120
           ES+LTPSLISQTLLNLH+SPQ+VLDFLNH HHKL DA TLCLAIVIVARLPSPKPALHLL
Sbjct: 61  ESTLTPSLISQTLLNLHQSPQIVLDFLNHLHHKLPDAHTLCLAIVIVARLPSPKPALHLL 120

Query: 121 KQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 180
           KQALGGGTTNSIREIFE LAASRDRLGFKSSIVFD+LIKSCCDMNRADEA ECFYTMKEK
Sbjct: 121 KQALGGGTTNSIREIFELLAASRDRLGFKSSIVFDHLIKSCCDMNRADEALECFYTMKEK 180

Query: 181 GVLPTIETCNS 192
           G+LP IETCN+
Sbjct: 181 GILPKIETCNN 191

[Close]

BLAST of CsaV3_7G010110 vs. TrEMBL
Match: tr|D7STD9|D7STD9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0055g00970 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.0e-41
Identity = 86/160 (53.75%), Postives = 115/160 (71.88%), Query Frame = 0


Query: 31  VSTTNLASPLTPHFLEQSARSSQWHFIKQVESSLTPSLISQTLLNLHESPQVVLDFLNHF 90
           ++++    P+T   + +S  SSQWHFI+QV  +LTP+LIS  L NL   PQ+V DF++H 
Sbjct: 38  LASSESTPPITEEVISKSVLSSQWHFIEQVSPNLTPALISNVLYNLCSKPQLVSDFIHHL 97

Query: 91  HHKLSDARTLCLAIVIVARLPSPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKS 150
           H    D ++ CLA+V++ARLPSPK AL LLKQ +G     + RE+F+ L  SRDRL  KS
Sbjct: 98  HPHCLDTKSYCLAVVLLARLPSPKLALQLLKQVMGTRIATN-RELFDELTLSRDRLSVKS 157

Query: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCN 191
           SIVFD L++ CC++ RADEAF+CFY MKEKG++P IETCN
Sbjct: 158 SIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCN 196

[Close]

BLAST of CsaV3_7G010110 vs. TrEMBL
Match: tr|A0A2P4JS57|A0A2P4JS57_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_06685 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.3e-41
Identity = 99/191 (51.83%), Postives = 124/191 (64.92%), Query Frame = 0


Query: 3   PCRIPKLSSLKLKPFSSISLQKTPLES---PVSTTNLASPLTPHFLEQSARSSQWHFIKQ 62
           P   PK SS  L  FSS     +  ++   P   T    P+T ++L+ S +SSQWH IK 
Sbjct: 18  PILFPKDSSPSLALFSSTPQPNSSPQTQTLPQYATANPPPITLNYLQNSIQSSQWHLIKH 77

Query: 63  VESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHL 122
           +  +LT SLIS TL NLH++PQ+VL+F+ H      D +T CLAI IVARLPSPK  +  
Sbjct: 78  LAPNLTSSLISTTLFNLHKTPQLVLEFITHIEFHRLDIKTCCLAIAIVARLPSPKATIQF 137

Query: 123 LKQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKE 182
           LKQA+  G   SI  IF  LA +RD L  KSSIVFD LI++CC++ RADEAFECF  MKE
Sbjct: 138 LKQAISCGIA-SIGVIFNELALARDSLSIKSSIVFDLLIRACCELKRADEAFECFNMMKE 197

Query: 183 KGVLPTIETCN 191
           KG++P IETCN
Sbjct: 198 KGIVPKIETCN 207

[Close]

BLAST of CsaV3_7G010110 vs. TrEMBL
Match: tr|A0A2I4DLE7|A0A2I4DLE7_9ROSI (pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Juglans regia OX=51240 GN=LOC108981314 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.3e-41
Identity = 97/171 (56.73%), Postives = 118/171 (69.01%), Query Frame = 0


Query: 26  PLESPVSTT----NLAS--PLTPHFLEQSARSSQWHFIKQVESSLTPSLISQTLLNLHES 85
           P  SP + T    NL +  P+T  FL+ S +SSQW+ IK    +LTPSLIS TL NL ES
Sbjct: 38  PCSSPKTQTLPKDNLTNPPPVTQRFLQNSIQSSQWNLIKHHAQNLTPSLISTTLYNLRES 97

Query: 86  PQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLLKQALGGGTTNSIREIFEFL 145
           P +VL+F++H      D +T CLAI IVARLPS KP L LLKQA+  G + + R +F+ L
Sbjct: 98  PHLVLEFISHIEFHRLDVKTCCLAIDIVARLPSQKPTLQLLKQAISSGISTT-RGLFDEL 157

Query: 146 AASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCN 191
           A +RD L   SSIVFD LI++CCD+ RADEAFECF  MKEKGVLP IETCN
Sbjct: 158 ALARDNLSITSSIVFDLLIRACCDLKRADEAFECFDMMKEKGVLPKIETCN 207

The following BLAST results are available for this feature:

BLAST of CsaV3_7G010110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137128.1	3.1e-101	100.00	PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial ...	[more]
KGN43973.1	3.1e-101	100.00	hypothetical protein Csa_7G075050 [Cucumis sativus]	[more]
XP_008454892.1	1.4e-90	90.05	PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial ...	[more]
XP_022136116.1	1.5e-63	67.98	pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Momordica ...	[more]
XP_022952975.1	6.3e-62	68.84	pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Cucurbita ...	[more]

BLAST of CsaV3_7G010110 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15630.1	1.9e-36	41.58	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G26680.1	1.1e-04	24.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_7G010110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZQF1\|PP152_ARATH	3.4e-35	41.58	Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidop...	[more]

BLAST of CsaV3_7G010110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3C0\|A0A0A0K3C0_CUCSA	2.0e-101	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075050 PE=4 SV=1	[more]
tr\|A0A1S3C0D3\|A0A1S3C0D3_CUCME	9.5e-91	90.05	pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Cucumis ...	[more]
tr\|D7STD9\|D7STD9_VITVI	4.0e-41	53.75	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0055g00970 PE=4 SV=...	[more]
tr\|A0A2P4JS57\|A0A2P4JS57_QUESU	5.3e-41	51.83	Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=5...	[more]
tr\|A0A2I4DLE7\|A0A2I4DLE7_9ROSI	5.3e-41	56.73	pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Juglans ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR033443	PPR_long
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G010110.1	CsaV3_7G010110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 145..196 e-value: 1.2E-4 score: 22.0
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 461..492 e-value: 9.7E-10 score: 37.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 153..185 e-value: 1.2E-5 score: 23.2 coord: 573..605 e-value: 1.1E-8 score: 32.7 coord: 327..360 e-value: 8.6E-9 score: 33.0 coord: 257..291 e-value: 2.9E-9 score: 34.5 coord: 292..325 e-value: 2.8E-10 score: 37.7 coord: 433..466 e-value: 1.2E-6 score: 26.3 coord: 188..218 e-value: 7.8E-4 score: 17.5 coord: 363..396 e-value: 2.5E-8 score: 31.6 coord: 397..430 e-value: 5.3E-9 score: 33.7 coord: 537..570 e-value: 1.2E-8 score: 32.5 coord: 222..256 e-value: 3.1E-9 score: 34.4 coord: 502..535 e-value: 2.6E-13 score: 47.3 coord: 468..501 e-value: 2.4E-7 score: 28.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 569..618 e-value: 1.8E-12 score: 47.1 coord: 499..542 e-value: 1.5E-17 score: 63.4 coord: 221..268 e-value: 1.4E-14 score: 53.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 290..324 score: 15.017
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 255..289 score: 12.715
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 465..499 score: 11.093
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 185..219 score: 8.703
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 325..359 score: 12.332
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 500..534 score: 15.784
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 605..628 score: 5.009
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 430..464 score: 10.687
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 535..569 score: 12.66
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 395..429 score: 13.526
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 150..184 score: 10.83
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 360..394 score: 11.093
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 570..604 score: 12.452
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 220..254 score: 12.386
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 303..452 e-value: 1.9E-17 score: 63.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 108..238 e-value: 2.5E-22 score: 81.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 239..351 e-value: 3.5E-38 score: 133.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 352..423 e-value: 3.1E-20 score: 74.4 coord: 564..626 e-value: 1.4E-12 score: 49.5 coord: 424..493 e-value: 1.4E-18 score: 69.0 coord: 494..563 e-value: 3.6E-25 score: 90.6
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 265..396 coord: 431..453 coord: 188..226
None	No IPR available	PANTHER	PTHR24015:SF918	SUBFAMILY NOT NAMED	coord: 48..619
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 48..619

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G010110	CSPI07G08010	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G010110	CSPI02G11990	Wild cucumber (PI 183967)	cpicucB122
CsaV3_7G010110	Cucsa.220220	Cucumber (Gy14) v1	cgycucB342
CsaV3_7G010110	CmaCh19G006350	Cucurbita maxima (Rimu)	cmacucB0639
CsaV3_7G010110	CmoCh19G006500	Cucurbita moschata (Rifu)	cmocucB0623
CsaV3_7G010110	Cp4.1LG15g05090	Cucurbita pepo (Zucchini)	cpecucB0323
CsaV3_7G010110	CsGy7G007580	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G010110	CsGy2G012030	Cucumber (Gy14) v2	cgybcucB098
CsaV3_7G010110	Carg22040	Silver-seed gourd	carcucB0237
CsaV3_7G010110	Cla015975	Watermelon (97103) v1	cucwmB635
CsaV3_7G010110	MELO3C018417	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G010110	ClCG02G005520	Watermelon (Charleston Gray)	cucwcgB572
CsaV3_7G010110	Lsi11G010450	Bottle gourd (USVL1VR-Ls)	cuclsiB530
CsaV3_7G010110	MELO3C018417.2	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G010110	Cla97C02G032510	Watermelon (97103) v2	cucwmbB550
CsaV3_7G010110	Bhi05G001031	Wax gourd	cucwgoB688

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G010110	Cucurbita maxima (Rimu)	cmacucB0171
CsaV3_7G010110	Cucurbita moschata (Rifu)	cmocucB0160
CsaV3_7G010110	Cucurbita pepo (Zucchini)	cpecucB0868