Carg22040 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22040
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_175 : 276563 .. 278476 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGTTACAAAATTCTGAAGCTTTCTTCGTTGAATTTCCAAGCAACCACTAATTCCCAATCCTTCGCACTTTTCTCTTCGATTTCTCCCCATAAAACACCACCAGATTCTCAATTTCCATCTCCCAATTCAACCACAAAAGCCAATTCGACTCTAACCCAGAATTCTCTCGAGAAATTCGCCCGGTCCTCTCAGTGGCATTTCATCAAACAGGTTGAATCCACTCTGACTCCGTCGCTTATTTCCGAAACCCTTCAAAATCTTCACGATTCTCCACAAATTGTTCTCGAATTGTTAAACCATTTACAACATGGATTACTTGATTCTCAAACCCATTGCCTTGCCATTGTCATTGTTGCTCGTCTTCCATCTCCCAAACCCACTTTACAGCTTCTAAAACAAGCTGTTGGGTGTGGCACTAATTCAGTTAAGGAGATTTTTGAATTGTTAGCGGCTTCTCGTGATCGATTGGGTGTTAAAAGCAGTATTGTTTTTGATTACTTGATTAAGTCCTGTTGCGAATTGAATAGGGCAGATGAAGCTTTTGAGTGTTTTTACATGATGAAGGAAAATGGTGTTGCACCCAAGATTGAGACCTGCAATGATTTGCTGAGTTTGTTTCTTAGGTTGAATAGAACTGAAACAGCTTGGGTTTTGTATGCTGAGATGTTTAGATTGAGGATAAAATCTAGCGTTTATACATTTAACATAATGATCAATGTTCTATGCAAGGAGGGGAAGTTGAAGAAGGCTAAGGATTTTATTGAGCATATGGAATGCTTAGGGGTTAAACCGAATGTTGTTACGTATAATACAATTGTTCATGGATATTGTTCGAGAGGGAGAGTTGAAGGGGCTGATGCTATTTTGAGTATTATGAAAAGGAAAAATATTCGACCTGATTCTTACACATATGGATCTCTAATCAGCGGGATGTGCAAGCAAGGACGACTTGAAGAAGCGTCGAAGATTTTTGAAGAAATGGTACAAAATGGGTTACTTCCTAGTGCTGTAACTTATAATACTTTGATTGATGGATTTTGCAATAAGGGTAATTTGGATATGGCCTTTGGTTATAAGGATGAAATGATGAAGAAGGGCATAATGCCGACTGTATCAACGTATAACTTGTTGATTCATGCATTGTTTATGGAGCAAAAATATGATGAAGCTGAAGGTATGATCAAGGAAATTCACGAGAAAGGTATTGCTCCCGATGCTATTACGTATAATATCTTGATCAATGGGTATTGTAGATGTGGAAATGCAAAGAAAGCATTTCGTCTGCACGACGAAATGTTGGCGAGTGGCATTCGGCCAACGAAAGTGACATACACATCACTAATTCATGTTTTGAGCAAAAAGAATAGAATGAAGGAGGCAGATGATTTGTTTAAAAAGATCACAAGTAAAGGTATGTTGCCCGATGTCATAATGTTTAATGCTTTGATAGATGGTCATTGCTCGAACGGTAATGTGGAGCGTGCATTTGAGCTTCTGAAAGATATGGATAGGACGAAGGTTCGTCCCGATGAAGTGACTTTCAATACAATAATGCAAGGACGTTGTAGGGAAGGAAAAGTCGAAGAAGCCCGTGAACTTTTCGATGAGATGAAGAGAAGAGGAATTAAGCCCGACCATGTTAGCTTCAATACACTGATAAGTGGTTATAGTCGACGAGGCGACGTAAAGGATGCTTTCAGGGTACGGGATGAGATGCTCGATAAAGGATTCAATCCTACTCTTCTAACTTATAACGCCCTTATACAAGGGTTATTTAAGAACCAAGAAGGTCATCATGCTGAAGAGCTTCTCAAAGAAATGGTAAGTAAAGGTATAACACCTGATGATAGCACTTATTTCTCATTGATTGAAGGTATTACTAAAGTTAATAGTCCTGTTGAAACTTAG

mRNA sequence

ATGAATCGTTACAAAATTCTGAAGCTTTCTTCGTTGAATTTCCAAGCAACCACTAATTCCCAATCCTTCGCACTTTTCTCTTCGATTTCTCCCCATAAAACACCACCAGATTCTCAATTTCCATCTCCCAATTCAACCACAAAAGCCAATTCGACTCTAACCCAGAATTCTCTCGAGAAATTCGCCCGGTCCTCTCAGTGGCATTTCATCAAACAGGTTGAATCCACTCTGACTCCGTCGCTTATTTCCGAAACCCTTCAAAATCTTCACGATTCTCCACAAATTGTTCTCGAATTGTTAAACCATTTACAACATGGATTACTTGATTCTCAAACCCATTGCCTTGCCATTGTCATTGTTGCTCGTCTTCCATCTCCCAAACCCACTTTACAGCTTCTAAAACAAGCTGTTGGGTGTGGCACTAATTCAGTTAAGGAGATTTTTGAATTGTTAGCGGCTTCTCGTGATCGATTGGGTGTTAAAAGCAGTATTGTTTTTGATTACTTGATTAAGTCCTGTTGCGAATTGAATAGGGCAGATGAAGCTTTTGAGTGTTTTTACATGATGAAGGAAAATGGTGTTGCACCCAAGATTGAGACCTGCAATGATTTGCTGAGTTTGTTTCTTAGGTTGAATAGAACTGAAACAGCTTGGGTTTTGTATGCTGAGATGTTTAGATTGAGGATAAAATCTAGCGTTTATACATTTAACATAATGATCAATGTTCTATGCAAGGAGGGGAAGTTGAAGAAGGCTAAGGATTTTATTGAGCATATGGAATGCTTAGGGGTTAAACCGAATGTTGTTACGTATAATACAATTGTTCATGGATATTGTTCGAGAGGGAGAGTTGAAGGGGCTGATGCTATTTTGAGTATTATGAAAAGGAAAAATATTCGACCTGATTCTTACACATATGGATCTCTAATCAGCGGGATGTGCAAGCAAGGACGACTTGAAGAAGCGTCGAAGATTTTTGAAGAAATGGTACAAAATGGGTTACTTCCTAGTGCTGTAACTTATAATACTTTGATTGATGGATTTTGCAATAAGGGTAATTTGGATATGGCCTTTGGTTATAAGGATGAAATGATGAAGAAGGGCATAATGCCGACTGTATCAACGTATAACTTGTTGATTCATGCATTGTTTATGGAGCAAAAATATGATGAAGCTGAAGGTATGATCAAGGAAATTCACGAGAAAGGTATTGCTCCCGATGCTATTACGTATAATATCTTGATCAATGGGTATTGTAGATGTGGAAATGCAAAGAAAGCATTTCGTCTGCACGACGAAATGTTGGCGAGTGGCATTCGGCCAACGAAAGTGACATACACATCACTAATTCATGTTTTGAGCAAAAAGAATAGAATGAAGGAGGCAGATGATTTGTTTAAAAAGATCACAAGTAAAGGTATGTTGCCCGATGTCATAATGTTTAATGCTTTGATAGATGGTCATTGCTCGAACGGTAATGTGGAGCGTGCATTTGAGCTTCTGAAAGATATGGATAGGACGAAGGTTCGTCCCGATGAAGTGACTTTCAATACAATAATGCAAGGACGTTGTAGGGAAGGAAAAGTCGAAGAAGCCCGTGAACTTTTCGATGAGATGAAGAGAAGAGGAATTAAGCCCGACCATGTTAGCTTCAATACACTGATAAGTGGTTATAGTCGACGAGGCGACGTAAAGGATGCTTTCAGGGTACGGGATGAGATGCTCGATAAAGGATTCAATCCTACTCTTCTAACTTATAACGCCCTTATACAAGGGTTATTTAAGAACCAAGAAGGTCATCATGCTGAAGAGCTTCTCAAAGAAATGGTAAGTAAAGGTATAACACCTGATGATAGCACTTATTTCTCATTGATTGAAGGTATTACTAAAGTTAATAGTCCTGTTGAAACTTAG

Coding sequence (CDS)

ATGAATCGTTACAAAATTCTGAAGCTTTCTTCGTTGAATTTCCAAGCAACCACTAATTCCCAATCCTTCGCACTTTTCTCTTCGATTTCTCCCCATAAAACACCACCAGATTCTCAATTTCCATCTCCCAATTCAACCACAAAAGCCAATTCGACTCTAACCCAGAATTCTCTCGAGAAATTCGCCCGGTCCTCTCAGTGGCATTTCATCAAACAGGTTGAATCCACTCTGACTCCGTCGCTTATTTCCGAAACCCTTCAAAATCTTCACGATTCTCCACAAATTGTTCTCGAATTGTTAAACCATTTACAACATGGATTACTTGATTCTCAAACCCATTGCCTTGCCATTGTCATTGTTGCTCGTCTTCCATCTCCCAAACCCACTTTACAGCTTCTAAAACAAGCTGTTGGGTGTGGCACTAATTCAGTTAAGGAGATTTTTGAATTGTTAGCGGCTTCTCGTGATCGATTGGGTGTTAAAAGCAGTATTGTTTTTGATTACTTGATTAAGTCCTGTTGCGAATTGAATAGGGCAGATGAAGCTTTTGAGTGTTTTTACATGATGAAGGAAAATGGTGTTGCACCCAAGATTGAGACCTGCAATGATTTGCTGAGTTTGTTTCTTAGGTTGAATAGAACTGAAACAGCTTGGGTTTTGTATGCTGAGATGTTTAGATTGAGGATAAAATCTAGCGTTTATACATTTAACATAATGATCAATGTTCTATGCAAGGAGGGGAAGTTGAAGAAGGCTAAGGATTTTATTGAGCATATGGAATGCTTAGGGGTTAAACCGAATGTTGTTACGTATAATACAATTGTTCATGGATATTGTTCGAGAGGGAGAGTTGAAGGGGCTGATGCTATTTTGAGTATTATGAAAAGGAAAAATATTCGACCTGATTCTTACACATATGGATCTCTAATCAGCGGGATGTGCAAGCAAGGACGACTTGAAGAAGCGTCGAAGATTTTTGAAGAAATGGTACAAAATGGGTTACTTCCTAGTGCTGTAACTTATAATACTTTGATTGATGGATTTTGCAATAAGGGTAATTTGGATATGGCCTTTGGTTATAAGGATGAAATGATGAAGAAGGGCATAATGCCGACTGTATCAACGTATAACTTGTTGATTCATGCATTGTTTATGGAGCAAAAATATGATGAAGCTGAAGGTATGATCAAGGAAATTCACGAGAAAGGTATTGCTCCCGATGCTATTACGTATAATATCTTGATCAATGGGTATTGTAGATGTGGAAATGCAAAGAAAGCATTTCGTCTGCACGACGAAATGTTGGCGAGTGGCATTCGGCCAACGAAAGTGACATACACATCACTAATTCATGTTTTGAGCAAAAAGAATAGAATGAAGGAGGCAGATGATTTGTTTAAAAAGATCACAAGTAAAGGTATGTTGCCCGATGTCATAATGTTTAATGCTTTGATAGATGGTCATTGCTCGAACGGTAATGTGGAGCGTGCATTTGAGCTTCTGAAAGATATGGATAGGACGAAGGTTCGTCCCGATGAAGTGACTTTCAATACAATAATGCAAGGACGTTGTAGGGAAGGAAAAGTCGAAGAAGCCCGTGAACTTTTCGATGAGATGAAGAGAAGAGGAATTAAGCCCGACCATGTTAGCTTCAATACACTGATAAGTGGTTATAGTCGACGAGGCGACGTAAAGGATGCTTTCAGGGTACGGGATGAGATGCTCGATAAAGGATTCAATCCTACTCTTCTAACTTATAACGCCCTTATACAAGGGTTATTTAAGAACCAAGAAGGTCATCATGCTGAAGAGCTTCTCAAAGAAATGGTAAGTAAAGGTATAACACCTGATGATAGCACTTATTTCTCATTGATTGAAGGTATTACTAAAGTTAATAGTCCTGTTGAAACTTAG

Protein sequence

MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEKFARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIVARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRADEAFECFYMMKENGVAPKIETCNDLLSLFLRLNRTETAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFIEHMECLGVKPNVVTYNTIVHGYCSRGRVEGADAILSIMKRKNIRPDSYTYGSLISGMCKQGRLEEASKIFEEMVQNGLLPSAVTYNTLIDGFCNKGNLDMAFGYKDEMMKKGIMPTVSTYNLLIHALFMEQKYDEAEGMIKEIHEKGIAPDAITYNILINGYCRCGNAKKAFRLHDEMLASGIRPTKVTYTSLIHVLSKKNRMKEADDLFKKITSKGMLPDVIMFNALIDGHCSNGNVERAFELLKDMDRTKVRPDEVTFNTIMQGRCREGKVEEARELFDEMKRRGIKPDHVSFNTLISGYSRRGDVKDAFRVRDEMLDKGFNPTLLTYNALIQGLFKNQEGHHAEELLKEMVSKGITPDDSTYFSLIEGITKVNSPVET

Homology

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BLAST of Carg22040 vs. NCBI nr
Match: XP_022952975.1 (pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Cucurbita moschata])

HSP 1 Score: 395.2 bits (1014), Expect = 4.2e-106
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK 60
           MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK
Sbjct: 1   MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK 60

Query: 61  FARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIV 120
           FARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIV
Sbjct: 61  FARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIV 120

Query: 121 ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRAD 180
           ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRAD
Sbjct: 121 ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRAD 180

Query: 181 EAFECFYMMKENGVAPKIETCN 203
           EAFECFYMMKENGVAPKIETCN
Sbjct: 181 EAFECFYMMKENGVAPKIETCN 202

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BLAST of Carg22040 vs. NCBI nr
Match: XP_023554102.1 (pentatricopeptide repeat-containing protein At2g15630, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.9 bits (982), Expect = 2.2e-102
Identity = 196/200 (98.00%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK 60
           MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK
Sbjct: 1   MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK 60

Query: 61  FARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIV 120
           FARSSQWHFIKQVESTLTPSLIS+TLQNLHDSPQIVLELLNHLQHGLLDS+THCLAIVIV
Sbjct: 61  FARSSQWHFIKQVESTLTPSLISDTLQNLHDSPQIVLELLNHLQHGLLDSRTHCLAIVIV 120

Query: 121 ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRAD 180
           ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRD+LGVKSSIVFDYLIKSCCELNRAD
Sbjct: 121 ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDQLGVKSSIVFDYLIKSCCELNRAD 180

Query: 181 EAFECFYMMKENGVAPKIET 201
           EAFECFYMMKE GVAPKIET
Sbjct: 181 EAFECFYMMKEKGVAPKIET 200

[Close]

BLAST of Carg22040 vs. NCBI nr
Match: XP_023554103.1 (pentatricopeptide repeat-containing protein At2g15630, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.9 bits (982), Expect = 2.2e-102
Identity = 196/200 (98.00%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK 60
           MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK
Sbjct: 1   MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK 60

Query: 61  FARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIV 120
           FARSSQWHFIKQVESTLTPSLIS+TLQNLHDSPQIVLELLNHLQHGLLDS+THCLAIVIV
Sbjct: 61  FARSSQWHFIKQVESTLTPSLISDTLQNLHDSPQIVLELLNHLQHGLLDSRTHCLAIVIV 120

Query: 121 ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRAD 180
           ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRD+LGVKSSIVFDYLIKSCCELNRAD
Sbjct: 121 ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDQLGVKSSIVFDYLIKSCCELNRAD 180

Query: 181 EAFECFYMMKENGVAPKIET 201
           EAFECFYMMKE GVAPKIET
Sbjct: 181 EAFECFYMMKEKGVAPKIET 200

[Close]

BLAST of Carg22040 vs. NCBI nr
Match: XP_022972339.1 (pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Cucurbita maxima])

HSP 1 Score: 373.2 bits (957), Expect = 1.7e-99
Identity = 193/200 (96.50%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK 60
           MNRYKILKLSSL FQATTNSQSFALFSSISP KTPP+SQFPS NST KANSTLTQNSLEK
Sbjct: 1   MNRYKILKLSSLKFQATTNSQSFALFSSISPQKTPPESQFPSSNSTKKANSTLTQNSLEK 60

Query: 61  FARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIV 120
           FARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIV
Sbjct: 61  FARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIV 120

Query: 121 ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRAD 180
           ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRD+LGVKSSIVFDYLIKSCCELNRAD
Sbjct: 121 ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDQLGVKSSIVFDYLIKSCCELNRAD 180

Query: 181 EAFECFYMMKENGVAPKIET 201
           EAFECFYMMKE GVAPKIET
Sbjct: 181 EAFECFYMMKEKGVAPKIET 200

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BLAST of Carg22040 vs. NCBI nr
Match: XP_022136116.1 (pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Momordica charantia])

HSP 1 Score: 282.7 bits (722), Expect = 3.0e-72
Identity = 145/202 (71.78%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 1   MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK 60
           MN YK L  SSLNF+ TT+  SFA FSSIS  KTP ++   SPN  T     LT N LE+
Sbjct: 1   MNPYKFLNRSSLNFKTTTHCHSFAPFSSISLQKTPQETLSQSPNIPTNPILPLTHNFLEE 60

Query: 61  FARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIV 120
            ARSSQWH IKQ+   LTPSLIS+TLQNLH++PQIVL+LLNHL HG++D+++ CLAIVIV
Sbjct: 61  SARSSQWHLIKQIVPNLTPSLISQTLQNLHETPQIVLDLLNHLHHGVIDAESRCLAIVIV 120

Query: 121 ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRAD 180
           ARLPSP+P+LQLLK AVG GT SV+EIFE+LA SRDRLGVKSSIVFDYL+KSCCE+NRAD
Sbjct: 121 ARLPSPRPSLQLLKLAVGSGTTSVREIFEMLAISRDRLGVKSSIVFDYLVKSCCEMNRAD 180

Query: 181 EAFECFYMMKENGVAPKIETCN 203
           E FECFYMMKE GVAPKIETCN
Sbjct: 181 EGFECFYMMKEKGVAPKIETCN 202

[Close]

BLAST of Carg22040 vs. TAIR10
Match: AT2G15630.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 149.8 bits (377), Expect = 5.6e-36
Identity = 84/200 (42.00%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 3   RYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEKFA 62
           R++I  LS   +     S + A  SS++   T P+S  P           +T   L +  
Sbjct: 11  RHRISILSGAGY-----SPAAARLSSLAQTST-PESVLP----------PITSEILLESI 70

Query: 63  RSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIVAR 122
           RSSQWH ++ V   LTPSL+S TL +L  +P +    +NH+    LD QT CLAI ++++
Sbjct: 71  RSSQWHIVEHVADKLTPSLVSTTLLSLVKTPNLAFNFVNHIDLYRLDFQTQCLAIAVISK 130

Query: 123 LPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRADEA 182
           L SPKP  QLLK+ V    NS++ +F+ L  + DRL  KS+I+FD L++ CC+L   DEA
Sbjct: 131 LSSPKPVTQLLKEVVTSRKNSIRNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEA 190

Query: 183 FECFYMMKENGVAPKIETCN 203
            ECFY+MKE G  PK ETCN
Sbjct: 191 IECFYLMKEKGFYPKTETCN 194

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BLAST of Carg22040 vs. Swiss-Prot
Match: sp|Q9ZQF1|PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g15630 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.0e-34
Identity = 84/200 (42.00%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 3   RYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEKFA 62
           R++I  LS   +     S + A  SS++   T P+S  P           +T   L +  
Sbjct: 11  RHRISILSGAGY-----SPAAARLSSLAQTST-PESVLP----------PITSEILLESI 70

Query: 63  RSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIVAR 122
           RSSQWH ++ V   LTPSL+S TL +L  +P +    +NH+    LD QT CLAI ++++
Sbjct: 71  RSSQWHIVEHVADKLTPSLVSTTLLSLVKTPNLAFNFVNHIDLYRLDFQTQCLAIAVISK 130

Query: 123 LPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRADEA 182
           L SPKP  QLLK+ V    NS++ +F+ L  + DRL  KS+I+FD L++ CC+L   DEA
Sbjct: 131 LSSPKPVTQLLKEVVTSRKNSIRNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEA 190

Query: 183 FECFYMMKENGVAPKIETCN 203
            ECFY+MKE G  PK ETCN
Sbjct: 191 IECFYLMKEKGFYPKTETCN 194

[Close]

BLAST of Carg22040 vs. TrEMBL
Match: tr|A0A1S3C0D3|A0A1S3C0D3_CUCME (pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495200 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 7.7e-64
Identity = 141/200 (70.50%), Postives = 155/200 (77.50%), Query Frame = 0


Query: 4   YKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEKFAR 63
           Y+I KLSSL             FSSIS H TP      SPNS+T A S LT + LE+ AR
Sbjct: 4   YRIPKLSSLKLNP---------FSSISLHNTP----LESPNSSTNAASPLTPHFLEQSAR 63

Query: 64  SSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIVARL 123
           SSQWHFIKQVESTLTPSLIS+TL NLH SPQIVL+ LNHL H L D+ T CLAIVIVARL
Sbjct: 64  SSQWHFIKQVESTLTPSLISQTLLNLHQSPQIVLDFLNHLHHKLPDAHTLCLAIVIVARL 123

Query: 124 PSPKPTLQLLKQAVGCG-TNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRADEA 183
           PSPKP L LLKQA+G G TNS++EIFELLAASRDRLG KSSIVFD+LIKSCC++NRADEA
Sbjct: 124 PSPKPALHLLKQALGGGTTNSIREIFELLAASRDRLGFKSSIVFDHLIKSCCDMNRADEA 183

Query: 184 FECFYMMKENGVAPKIETCN 203
            ECFY MKE G+ PKIETCN
Sbjct: 184 LECFYTMKEKGILPKIETCN 190

[Close]

BLAST of Carg22040 vs. TrEMBL
Match: tr|A0A0A0K3C0|A0A0A0K3C0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075050 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.7e-61
Identity = 137/199 (68.84%), Postives = 153/199 (76.88%), Query Frame = 0


Query: 5   KILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEKFARS 64
           +I KLSSL  +          FSSIS  KTP      SP STT   S LT + LE+ ARS
Sbjct: 5   RIPKLSSLKLKP---------FSSISLQKTP----LESPVSTTNLASPLTPHFLEQSARS 64

Query: 65  SQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIVARLP 124
           SQWHFIKQVES+LTPSLIS+TL NLH+SPQ+VL+ LNH  H L D++T CLAIVIVARLP
Sbjct: 65  SQWHFIKQVESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLP 124

Query: 125 SPKPTLQLLKQAVGCG-TNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRADEAF 184
           SPKP L LLKQA+G G TNS++EIFE LAASRDRLG KSSIVFDYLIKSCC++NRADEAF
Sbjct: 125 SPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAF 184

Query: 185 ECFYMMKENGVAPKIETCN 203
           ECFY MKE GV P IETCN
Sbjct: 185 ECFYTMKEKGVLPTIETCN 190

[Close]

BLAST of Carg22040 vs. TrEMBL
Match: tr|A0A2P4JS57|A0A2P4JS57_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_06685 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 8.0e-45
Identity = 108/202 (53.47%), Postives = 132/202 (65.35%), Query Frame = 0


Query: 1   MNRYKILKLSSLNFQATTNSQSFALFSSISPHKTPPDSQFPSPNSTTKANSTLTQNSLEK 60
           +  +K  KL  + F    +S S ALFSS     + P +Q   P   T     +T N L+ 
Sbjct: 8   LQAFKHHKLKPILF-PKDSSPSLALFSSTPQPNSSPQTQ-TLPQYATANPPPITLNYLQN 67

Query: 61  FARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIV 120
             +SSQWH IK +   LT SLIS TL NLH +PQ+VLE + H++   LD +T CLAI IV
Sbjct: 68  SIQSSQWHLIKHLAPNLTSSLISTTLFNLHKTPQLVLEFITHIEFHRLDIKTCCLAIAIV 127

Query: 121 ARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRAD 180
           ARLPSPK T+Q LKQA+ CG  S+  IF  LA +RD L +KSSIVFD LI++CCEL RAD
Sbjct: 128 ARLPSPKATIQFLKQAISCGIASIGVIFNELALARDSLSIKSSIVFDLLIRACCELKRAD 187

Query: 181 EAFECFYMMKENGVAPKIETCN 203
           EAFECF MMKE G+ PKIETCN
Sbjct: 188 EAFECFNMMKEKGIVPKIETCN 207

[Close]

BLAST of Carg22040 vs. TrEMBL
Match: tr|A0A2I4DLE7|A0A2I4DLE7_9ROSI (pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Juglans regia OX=51240 GN=LOC108981314 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.7e-42
Identity = 103/188 (54.79%), Postives = 127/188 (67.55%), Query Frame = 0


Query: 17  TTNSQSFALFSSISPH--KTPPDSQFPSPNSTTKANSTLTQNSLEKFARSSQWHFIKQVE 76
           T  S   ALFSS +PH   +P     P  N T      +TQ  L+   +SSQW+ IK   
Sbjct: 23  TNPSPFLALFSS-TPHPCSSPKTQTLPKDNLTNP--PPVTQRFLQNSIQSSQWNLIKHHA 82

Query: 77  STLTPSLISETLQNLHDSPQIVLELLNHLQHGLLDSQTHCLAIVIVARLPSPKPTLQLLK 136
             LTPSLIS TL NL +SP +VLE ++H++   LD +T CLAI IVARLPS KPTLQLLK
Sbjct: 83  QNLTPSLISTTLYNLRESPHLVLEFISHIEFHRLDVKTCCLAIDIVARLPSQKPTLQLLK 142

Query: 137 QAVGCGTNSVKEIFELLAASRDRLGVKSSIVFDYLIKSCCELNRADEAFECFYMMKENGV 196
           QA+  G ++ + +F+ LA +RD L + SSIVFD LI++CC+L RADEAFECF MMKE GV
Sbjct: 143 QAISSGISTTRGLFDELALARDNLSITSSIVFDLLIRACCDLKRADEAFECFDMMKEKGV 202

Query: 197 APKIETCN 203
            PKIETCN
Sbjct: 203 LPKIETCN 207

[Close]

BLAST of Carg22040 vs. TrEMBL
Match: tr|D7STD9|D7STD9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0055g00970 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.7e-42
Identity = 91/161 (56.52%), Postives = 117/161 (72.67%), Query Frame = 0


Query: 44  NSTTKANST--LTQNSLEKFARSSQWHFIKQVESTLTPSLISETLQNLHDSPQIVLELLN 103
           NS   + ST  +T+  + K   SSQWHFI+QV   LTP+LIS  L NL   PQ+V + ++
Sbjct: 36  NSLASSESTPPITEEVISKSVLSSQWHFIEQVSPNLTPALISNVLYNLCSKPQLVSDFIH 95

Query: 104 HLQHGLLDSQTHCLAIVIVARLPSPKPTLQLLKQAVGCGTNSVKEIFELLAASRDRLGVK 163
           HL    LD++++CLA+V++ARLPSPK  LQLLKQ +G    + +E+F+ L  SRDRL VK
Sbjct: 96  HLHPHCLDTKSYCLAVVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVK 155

Query: 164 SSIVFDYLIKSCCELNRADEAFECFYMMKENGVAPKIETCN 203
           SSIVFD L++ CCEL RADEAF+CFYMMKE G+ PKIETCN
Sbjct: 156 SSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCN 196

The following BLAST results are available for this feature:

BLAST of Carg22040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952975.1	4.2e-106	100.00	pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Cucurbita ...	[more]
XP_023554102.1	2.2e-102	98.00	pentatricopeptide repeat-containing protein At2g15630, mitochondrial isoform X1 ...	[more]
XP_023554103.1	2.2e-102	98.00	pentatricopeptide repeat-containing protein At2g15630, mitochondrial isoform X2 ...	[more]
XP_022972339.1	1.7e-99	96.50	pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Cucurbita ...	[more]
XP_022136116.1	3.0e-72	71.78	pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Momordica ...	[more]

BLAST of Carg22040 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15630.1	5.6e-36	42.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg22040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZQF1\|PP152_ARATH	1.0e-34	42.00	Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidop...	[more]

BLAST of Carg22040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0D3\|A0A1S3C0D3_CUCME	7.7e-64	70.50	pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Cucumis ...	[more]
tr\|A0A0A0K3C0\|A0A0A0K3C0_CUCSA	2.7e-61	68.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075050 PE=4 SV=1	[more]
tr\|A0A2P4JS57\|A0A2P4JS57_QUESU	8.0e-45	53.47	Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=5...	[more]
tr\|A0A2I4DLE7\|A0A2I4DLE7_9ROSI	3.7e-42	54.79	pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Juglans ...	[more]
tr\|D7STD9\|D7STD9_VITVI	3.7e-42	56.52	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0055g00970 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22040-RA	Carg22040-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 526..636 e-value: 6.9E-35 score: 123.0 coord: 130..225 e-value: 5.4E-11 score: 44.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 438..525 e-value: 2.0E-28 score: 101.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 226..295 e-value: 1.4E-20 score: 75.5 coord: 296..363 e-value: 1.2E-24 score: 88.8 coord: 364..437 e-value: 1.7E-22 score: 81.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 168..194 e-value: 1.5E-4 score: 21.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 535..591 e-value: 2.8E-15 score: 56.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 339..372 e-value: 1.5E-9 score: 35.4 coord: 444..478 e-value: 3.0E-7 score: 28.2 coord: 514..547 e-value: 5.2E-12 score: 43.2 coord: 480..513 e-value: 8.4E-9 score: 33.1 coord: 269..303 e-value: 1.6E-8 score: 32.2 coord: 549..582 e-value: 2.5E-9 score: 34.7 coord: 585..617 e-value: 1.3E-8 score: 32.5 coord: 234..268 e-value: 4.6E-9 score: 33.9 coord: 409..442 e-value: 5.7E-11 score: 39.9 coord: 375..408 e-value: 4.4E-7 score: 27.7 coord: 304..337 e-value: 2.9E-10 score: 37.7 coord: 165..196 e-value: 4.0E-6 score: 24.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 406..455 e-value: 3.9E-16 score: 58.9 coord: 336..383 e-value: 6.0E-16 score: 58.3 coord: 196..245 e-value: 6.4E-11 score: 42.2 coord: 476..525 e-value: 9.3E-16 score: 57.7 coord: 266..315 e-value: 9.5E-18 score: 64.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 232..266 score: 12.299
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 302..336 score: 14.59
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 197..231 score: 7.892
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 547..581 score: 13.351
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 372..406 score: 10.918
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 162..196 score: 10.972
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 407..441 score: 14.929
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 267..301 score: 12.858
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 442..476 score: 11.115
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 582..616 score: 11.509
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 337..371 score: 12.858
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 512..546 score: 15.17
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 477..511 score: 12.332
None	No IPR available	PANTHER	PTHR24015:SF918	SUBFAMILY NOT NAMED	coord: 55..632
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 55..632
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 296..502

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22040	Cla015975	Watermelon (97103) v1	carwmB0198
Carg22040	Csa7G075040	Cucumber (Chinese Long) v2	carcuB0233
Carg22040	MELO3C018417	Melon (DHL92) v3.5.1	carmeB0213
Carg22040	ClCG02G005520	Watermelon (Charleston Gray)	carwcgB0203
Carg22040	CSPI07G08010	Wild cucumber (PI 183967)	carcpiB0239
Carg22040	Cucsa.220220	Cucumber (Gy14) v1	carcgyB0251
Carg22040	CmaCh19G006350	Cucurbita maxima (Rimu)	carcmaB0288
Carg22040	CmoCh19G006500	Cucurbita moschata (Rifu)	carcmoB0293
Carg22040	CmoCh11G013310	Cucurbita moschata (Rifu)	carcmoB0292
Carg22040	Lsi11G010450	Bottle gourd (USVL1VR-Ls)	carlsiB186
Carg22040	Cp4.1LG15g05090	Cucurbita pepo (Zucchini)	carcpeB0295
Carg22040	CsGy7G007580	Cucumber (Gy14) v2	carcgybB0222
Carg22040	MELO3C018417.2	Melon (DHL92) v3.6.1	carmedB0218
Carg22040	CsaV3_7G010110	Cucumber (Chinese Long) v3	carcucB0237
Carg22040	Cla97C02G032510	Watermelon (97103) v2	carwmbB0212
Carg22040	Bhi05G001031	Wax gourd	carwgoB0260

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22040	Cucurbita maxima (Rimu)	carcmaB0287
Carg22040	Cucurbita pepo (Zucchini)	carcpeB0296
Carg22040	Bottle gourd (USVL1VR-Ls)	carlsiB185