CsaV3_6G002190 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G002190
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionhistone H4
Locationchr6 : 1503636 .. 1504336 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGGCCGCGGCAAGGGAGGCAAGGGTTTGGGAAAGGGAGGAGCCAAGCGTCACCGCAAAGTCTTGAGAGATAACATTCAAGGTATTACAAAGCCTGCAATTCGCCGTTTGGCTCGTCGTGGCGGTGTCAAGCGAATCAGCGGTTTGATTTATGAAGAAACCAGAGGTGTTTTGAAGATCTTCCTTGAGAATGTTATCCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCTTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGGTTAGGTTGTAGATTAATCCAATGGAGGATTGTAGATCTTGGCTTTAGATCTGGTTTTTCTTTCTTAGCGTTTATAAATTTTTTCTTCTCTTTTTAGGATTTCATGTACCCTAGTCCCTGTTATTCAGTAATTGAAATATTACTCGAATCATGATTCCACCTTTTCATCTCTCTCTTCCTTCAATTTGTTTCGTTCTTAGGGTTCATATAGTCTGGTATTGTTGGATGATTAATATTTGGTGCATTGTGTTCTGTGAGTGTATAAAGATAATGAATAGGCATTGAAGCTAAATTTCGGCATAAACCAGTTGAATGTTTATGATTTGATCAATGGTTATGTTCGTTAGATTTTGAATTTGGGATGTATGCTGCGGTGTTCTTGACATCTTTCTAA

mRNA sequence

ATGTCCGGCCGCGGCAAGGGAGGCAAGGGTTTGGGAAAGGGAGGAGCCAAGCGTCACCGCAAAGTCTTGAGAGATAACATTCAAGGTATTACAAAGCCTGCAATTCGCCGTTTGGCTCGTCGTGGCGGTGTCAAGCGAATCAGCGGTTTGATTTATGAAGAAACCAGAGGTGTTTTGAAGATCTTCCTTGAGAATGTTATCCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCTTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGATTTTGAATTTGGGATGTATGCTGCGGTGTTCTTGACATCTTTCTAA

Coding sequence (CDS)

ATGTCCGGCCGCGGCAAGGGAGGCAAGGGTTTGGGAAAGGGAGGAGCCAAGCGTCACCGCAAAGTCTTGAGAGATAACATTCAAGGTATTACAAAGCCTGCAATTCGCCGTTTGGCTCGTCGTGGCGGTGTCAAGCGAATCAGCGGTTTGATTTATGAAGAAACCAGAGGTGTTTTGAAGATCTTCCTTGAGAATGTTATCCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCTTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGATTTTGAATTTGGGATGTATGCTGCGGTGTTCTTGACATCTTTCTAA

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDFEFGMYAAVFLTSF
Homology
[Close]
BLAST of CsaV3_6G002190 vs. NCBI nr
Match: XP_016448403.1 (PREDICTED: uncharacterized protein LOC107773508 [Nicotiana tabacum])

HSP 1 Score: 202.6 bits (514), Expect = 7.4e-49
Identity = 105/116 (90.52%), Postives = 108/116 (93.10%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDFEFGMYAAVFLTS 117
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG + + +    F TS
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGYGYLLVIGFFCTS 116

[Close]
BLAST of CsaV3_6G002190 vs. NCBI nr
Match: XP_016438059.1 (PREDICTED: uncharacterized protein LOC107764046 [Nicotiana tabacum])

HSP 1 Score: 201.1 bits (510), Expect = 2.2e-48
Identity = 107/117 (91.45%), Postives = 110/117 (94.02%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDFEFGMYAAVFLTSF 118
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG+ +  +Y A  LT F
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGE-QPSIYKARLLTLF 116

[Close]
BLAST of CsaV3_6G002190 vs. NCBI nr
Match: XP_009017686.1 (hypothetical protein HELRODRAFT_172808 [Helobdella robusta] >XP_009017690.1 hypothetical protein HELRODRAFT_172812 [Helobdella robusta] >ESO04417.1 hypothetical protein HELRODRAFT_172808 [Helobdella robusta] >ESO04421.1 hypothetical protein HELRODRAFT_172812 [Helobdella robusta])

HSP 1 Score: 200.7 bits (509), Expect = 2.8e-48
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDF 105
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGDF
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGDF 104

[Close]
BLAST of CsaV3_6G002190 vs. NCBI nr
Match: KJB20142.1 (hypothetical protein B456_003G134900 [Gossypium raimondii])

HSP 1 Score: 200.7 bits (509), Expect = 2.8e-48
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDFEFGM 109
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG F+  M
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFQSTM 108

[Close]
BLAST of CsaV3_6G002190 vs. NCBI nr
Match: PPR96889.1 (hypothetical protein GOBAR_AA23770 [Gossypium barbadense])

HSP 1 Score: 200.7 bits (509), Expect = 2.8e-48
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDF 105
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG+F
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGEF 104

[Close]
BLAST of CsaV3_6G002190 vs. TAIR10
Match: AT1G07660.1 (Histone superfamily protein)

HSP 1 Score: 197.6 bits (501), Expect = 4.3e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of CsaV3_6G002190 vs. TAIR10
Match: AT1G07820.1 (Histone superfamily protein)

HSP 1 Score: 197.6 bits (501), Expect = 4.3e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of CsaV3_6G002190 vs. TAIR10
Match: AT2G28740.1 (histone H4)

HSP 1 Score: 197.6 bits (501), Expect = 4.3e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of CsaV3_6G002190 vs. TAIR10
Match: AT3G45930.1 (Histone superfamily protein)

HSP 1 Score: 197.6 bits (501), Expect = 4.3e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of CsaV3_6G002190 vs. TAIR10
Match: AT3G53730.1 (Histone superfamily protein)

HSP 1 Score: 197.6 bits (501), Expect = 4.3e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of CsaV3_6G002190 vs. Swiss-Prot
Match: sp|P62785|H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 7.8e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of CsaV3_6G002190 vs. Swiss-Prot
Match: sp|P59259|H4_ARATH (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 7.8e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of CsaV3_6G002190 vs. Swiss-Prot
Match: sp|Q6PMI5|H4_CHEMJ (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 197.6 bits (501), Expect = 7.8e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of CsaV3_6G002190 vs. Swiss-Prot
Match: sp|Q6WZ83|H4_EUCGL (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 197.6 bits (501), Expect = 7.8e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of CsaV3_6G002190 vs. Swiss-Prot
Match: sp|Q6LAF3|H4_FLATR (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 197.6 bits (501), Expect = 7.8e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]
BLAST of CsaV3_6G002190 vs. TrEMBL
Match: tr|A0A1S3Y8K5|A0A1S3Y8K5_TOBAC (Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107773508 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.9e-49
Identity = 105/116 (90.52%), Postives = 108/116 (93.10%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDFEFGMYAAVFLTS 117
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG + + +    F TS
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGYGYLLVIGFFCTS 116

[Close]
BLAST of CsaV3_6G002190 vs. TrEMBL
Match: tr|A0A1S3XDX6|A0A1S3XDX6_TOBAC (Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107764046 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-48
Identity = 107/117 (91.45%), Postives = 110/117 (94.02%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDFEFGMYAAVFLTSF 118
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG+ +  +Y A  LT F
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGE-QPSIYKARLLTLF 116

[Close]
BLAST of CsaV3_6G002190 vs. TrEMBL
Match: tr|T1F5Y6|T1F5Y6_HELRO (Histone H4 OS=Helobdella robusta OX=6412 GN=20204235 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.9e-48
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDF 105
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGDF
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGDF 104

[Close]
BLAST of CsaV3_6G002190 vs. TrEMBL
Match: tr|A0A0D2MND9|A0A0D2MND9_GOSRA (Histone H4 OS=Gossypium raimondii OX=29730 GN=B456_003G134900 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.9e-48
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDFEFGM 109
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG F+  M
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFQSTM 108

[Close]
BLAST of CsaV3_6G002190 vs. TrEMBL
Match: tr|A0A2P5X0L6|A0A2P5X0L6_GOSBA (Histone H4 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23770 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.9e-48
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDF 105
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG+F
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGEF 104

The following BLAST results are available for this feature:
BLAST of CsaV3_6G002190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016448403.17.4e-4990.52PREDICTED: uncharacterized protein LOC107773508 [Nicotiana tabacum][more]
XP_016438059.12.2e-4891.45PREDICTED: uncharacterized protein LOC107764046 [Nicotiana tabacum][more]
XP_009017686.12.8e-4898.08hypothetical protein HELRODRAFT_172808 [Helobdella robusta] >XP_009017690.1 hypo... [more]
KJB20142.12.8e-4896.30hypothetical protein B456_003G134900 [Gossypium raimondii][more]
PPR96889.12.8e-4899.04hypothetical protein GOBAR_AA23770 [Gossypium barbadense][more]
BLAST of CsaV3_6G002190 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07660.14.3e-51100.00Histone superfamily protein[more]
AT1G07820.14.3e-51100.00Histone superfamily protein[more]
AT2G28740.14.3e-51100.00histone H4[more]
AT3G45930.14.3e-51100.00Histone superfamily protein[more]
AT3G53730.14.3e-51100.00Histone superfamily protein[more]
BLAST of CsaV3_6G002190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P62785|H41_WHEAT7.8e-50100.00Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2[more]
sp|P59259|H4_ARATH7.8e-50100.00Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2[more]
sp|Q6PMI5|H4_CHEMJ7.8e-50100.00Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3[more]
sp|Q6WZ83|H4_EUCGL7.8e-50100.00Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3[more]
sp|Q6LAF3|H4_FLATR7.8e-50100.00Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3[more]
BLAST of CsaV3_6G002190 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3Y8K5|A0A1S3Y8K5_TOBAC4.9e-4990.52Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107773508 PE=3 SV=1[more]
tr|A0A1S3XDX6|A0A1S3XDX6_TOBAC1.4e-4891.45Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107764046 PE=3 SV=1[more]
tr|T1F5Y6|T1F5Y6_HELRO1.9e-4898.08Histone H4 OS=Helobdella robusta OX=6412 GN=20204235 PE=3 SV=1[more]
tr|A0A0D2MND9|A0A0D2MND9_GOSRA1.9e-4896.30Histone H4 OS=Gossypium raimondii OX=29730 GN=B456_003G134900 PE=3 SV=1[more]
tr|A0A2P5X0L6|A0A2P5X0L6_GOSBA1.9e-4899.04Histone H4 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23770 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR019809Histone_H4_CS
IPR035425CENP-T/H4_C
IPR009072Histone-fold
IPR001951Histone_H4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0009506 plasmodesma
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009579 thylakoid
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000786 nucleosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0005829 cytosol
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G002190.1CsaV3_6G002190.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001951Histone H4PRINTSPR00623HISTONEH4coord: 62..76
score: 95.1
coord: 77..89
score: 90.05
coord: 89..100
score: 97.79
coord: 5..16
score: 95.59
coord: 20..39
score: 93.38
coord: 40..60
score: 93.56
IPR001951Histone H4SMARTSM00417h44coord: 16..90
e-value: 2.0E-29
score: 113.7
IPR001951Histone H4CDDcd00076H4coord: 18..101
e-value: 1.16893E-44
score: 141.484
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 2..103
e-value: 4.7E-60
score: 202.1
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 3..102
IPR035425CENP-T/Histone H4, histone foldPFAMPF15511CENP-T_Ccoord: 36..96
e-value: 2.1E-8
score: 34.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR10484HISTONE H4coord: 1..102
NoneNo IPR availablePANTHERPTHR10484:SF160SUBFAMILY NOT NAMEDcoord: 1..102
IPR019809Histone H4, conserved sitePROSITEPS00047HISTONE_H4coord: 15..19

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G002190CSPI06G02040Wild cucumber (PI 183967)cpicucB364
CsaV3_6G002190Cucsa.326090Cucumber (Gy14) v1cgycucB506
CsaV3_6G002190CmaCh04G028720Cucurbita maxima (Rimu)cmacucB0906
CsaV3_6G002190Cp4.1LG01g21730Cucurbita pepo (Zucchini)cpecucB0569
CsaV3_6G002190CsGy6G002120Cucumber (Gy14) v2cgybcucB298
CsaV3_6G002190Carg05948Silver-seed gourdcarcucB0024
CsaV3_6G002190Cla016413Watermelon (97103) v1cucwmB559
CsaV3_6G002190Cla006624Watermelon (97103) v1cucwmB558
CsaV3_6G002190MELO3C019997Melon (DHL92) v3.5.1cucmeB487
CsaV3_6G002190ClCG11G005780Watermelon (Charleston Gray)cucwcgB452
CsaV3_6G002190Lsi03G002740Bottle gourd (USVL1VR-Ls)cuclsiB473
CsaV3_6G002190MELO3C019997.2Melon (DHL92) v3.6.1cucmedB473
CsaV3_6G002190Cla97C11G212700Watermelon (97103) v2cucwmbB441
CsaV3_6G002190Bhi04G001847Wax gourdcucwgoB605
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G002190Watermelon (97103) v2cucwmbB476
CsaV3_6G002190Watermelon (97103) v2cucwmbB500
CsaV3_6G002190Wax gourdcucwgoB646
CsaV3_6G002190Cucumber (Chinese Long) v3cuccucB179
CsaV3_6G002190Cucumber (Chinese Long) v3cuccucB203
CsaV3_6G002190Silver-seed gourdcarcucB0300
CsaV3_6G002190Silver-seed gourdcarcucB0711
CsaV3_6G002190Cucumber (Gy14) v2cgybcucB189
CsaV3_6G002190Cucumber (Gy14) v2cgybcucB242
CsaV3_6G002190Cucumber (Gy14) v1cgycucB187
CsaV3_6G002190Cucumber (Gy14) v1cgycucB218
CsaV3_6G002190Cucurbita maxima (Rimu)cmacucB0363
CsaV3_6G002190Cucurbita maxima (Rimu)cmacucB0811
CsaV3_6G002190Cucurbita maxima (Rimu)cmacucB0912
CsaV3_6G002190Cucurbita maxima (Rimu)cmacucB0913
CsaV3_6G002190Cucurbita moschata (Rifu)cmocucB0358
CsaV3_6G002190Cucurbita moschata (Rifu)cmocucB0795
CsaV3_6G002190Cucurbita moschata (Rifu)cmocucB0899
CsaV3_6G002190Cucurbita moschata (Rifu)cmocucB0903
CsaV3_6G002190Cucurbita pepo (Zucchini)cpecucB0094
CsaV3_6G002190Cucurbita pepo (Zucchini)cpecucB0238
CsaV3_6G002190Cucurbita pepo (Zucchini)cpecucB0574
CsaV3_6G002190Wild cucumber (PI 183967)cpicucB240
CsaV3_6G002190Bottle gourd (USVL1VR-Ls)cuclsiB459
CsaV3_6G002190Bottle gourd (USVL1VR-Ls)cuclsiB487
CsaV3_6G002190Melon (DHL92) v3.5.1cucmeB525
CsaV3_6G002190Melon (DHL92) v3.6.1cucmedB513
CsaV3_6G002190Watermelon (Charleston Gray)cucwcgB488
CsaV3_6G002190Watermelon (Charleston Gray)cucwcgB510
CsaV3_6G002190Watermelon (97103) v1cucwmB511
CsaV3_6G002190Watermelon (97103) v1cucwmB533