Lsi03G002740 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCGGCCGCGGAAAGGGAGGCAAGGGTTTGGGAAAAGGAGGAGCAAAGCGTCACAGGAAGGTCTTAAGAGATAACATTCAAGGCATCACAAAGCCTGCAATTCGCCGTTTGGCTCGTCGTGGAGGTGTTAAGCGAATCAGCGGTTTGATTTATGAAGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGAAAGACGGTGACCGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGGTTAGGTTATAGATTAATCGCATGAAGGATTGTAGATCTTGCCTTTAGATCTGGTTTCTTTCTTAGCGTCGGTAATTTTTTGTTCTCTTTTTTTTTTTAGGAGTTTCTGTAACCTAGACTCTGTTTATTCAGAAATTGAAATATTACTTGGTTGAAGAATTATGAAAACCACTTTAGGTTGTTCTACACTAATTATACCAACTTCTGGCAACTTATAACAACTAATATATGGTACTGTGTGAACACGAATCCGCATTGAACTAAACATTCCCGGTTTACGAGTTGAAAATTTCTGATCGATCAATTTTTATTTACGTTTAGTTCATATTTAGGATCTATAGCCATGGTGTCAAAGGCGGTGAACTGCACTGTTTATGATATCTTTCTAAATTTGAGCAAGGACTTGTAAATTGCCTAACCCATTGATTGTATCCAGAGAATTGTGGGGAAATTTTGATAGAATAACAATTGCTGGAGACTTGTAAATTGCCTAACCCATTGATTCATCAAGTTGAGTTTTTAATACACTGAAAAAAGCCCTTTCTCAAAGAAAGAAATCCTGAAAAGCCATTGAAATATAAATAGAAGGTTATAGAGTATATTTCATTGAAGAACTATATGAAACTCATTATTTGGTTGAAGAATTATGGTAGGATTAAATGTAGATAGAATTTGGTGTCTTATAATTGTGTGATTCAAAATGAGCTTGACAATCCGTCTTATTTTGCTCGTCTATCTAATAACAAATTTAATCCACTCGACTAATGTAGATTACACTTTCATCAATACACATGTTTAAAAAATTCAAAATTATAGGCCATATATAATAATAGGATATATCAGGAACTTTGGACTTGGAACAAATATTCATAATTGTTACATTTGGCTTTCAAAACAAAATCAAGTCAAGTGGGAAGAATGTTGAAGTTAAAATTAAAAATGAGTAAAAATAACTTTTTGGTCCATATAGATTTAAAAAGTTTTTGTATTAAATTTCAGTTTGCTACATTAACAAAGTAAAATTTTATTACAGTTTACTGATGATATGGAAGTTTAAAATGTAAAAATTAATAAGCATAATAATAAAAAACAAAAATCCCTCTCTCCCTTCTTCAGATAGCTCTTTAACTTTGGAGATGGTGAGGAACAAAGTGATAGTTATTTGCAATATATTTGGCATGTTCATGGAAAATCATGTTGTGAGCAGCCCTGAGGAACATCCATATGTTGAGAAGTTAGTATCAGTAAAAGCACGATATTCAGATTCAATACAAAGAAATTTTTTCAAGTAGACCCAACAACCTATGGTGCTCATGAAGTTGGAATAAGACAAAACAAATACAACCAAAGACTTTCAGGTAAAAGTAAAGTAAGATAGATGAAATTTACATATATACGTTTAGCCTATTTACTATCGAATAACGATAATAATATTTCTTATAACTTTTTTAAAAGGTTAAATGTATTGATGCAAGTGTTAAAAGTTTATAGGTATTTTTGAATTGAAGCGATGGTTTTCATATATTAGGGGTGTAAGCCATAAACGAAAAAAACTACTCAAACAAATCAAAAGCAACAACGATTTCGTGTCGACTTGGTTGCACTTTGTCAAGTTTGGAAGCCGATCAAATGGTCAACTTTGATTTATGAGGTGGCACGCCGGTAGTTTGAAACTCTAACTGATCAAATCACTATGTTATTTTTCAATTTTTAATTTCTAAGTTCCTAGTTTCAACTTTAACATTCCTGTACCAGCTCCAACTTGTTTGATTATTTCACGGCGTGTGTAGTGTATAGGTGTACTGTGTATGTATGATCAGTTCATATACTAAGTTCAAGTTTATAATAAAACTTTTAAATGTCTATAAATACTTTTTAAATAAAGTATTAACAGTTTTTGTCTATATTCTAATAATAAGGATATTGTATAATTTTTTTTTAAAAAATTCATAGGTTGTTTGAGTTGATAAGTTGAGTTACAAAAGATGAAGTTAATAGGTGGTCGTTAGAGGATGCCTCCAACAATTTTGAAGGTTCTCGTTGTTGGTGGTTAACGACAGGATTGATTCTTTGAAAATATTGGAACGAGGGAGAGAGAGAGAAAAAGATAGAATTCTTTGATAAATATGCAAACTTCAATTATGAACATTTTTTAATTTAGTGAAGTTGAGTTATTTAATATTAATTTTTAAAGTTGGTAAGCTAAACATTGAATCGAGTGAAAATCTCAACTCAACTCCCCTTAGTTAATGTCCCAAACATCCGAAGATATTCATGAAAATTTTGAAAGTTTAGTGGCATGTGTTAAATTAAGTATAAAGTTAAAATATAAATTCGAAATTTTGATTCGTAGATTAGCCGCTCATAATATGATTGTGTTTTTCGTTTCCCTCCCCACTACTCGGCGGTTACAATAAAAATTTCACATTTACCCGCGGAGAAATTGAAAAGGCAATTTCAAAAGCACAATCCGCGAACTTTTCACGCGAATCGAGTTTCTCGACCGTCGGATGAACCCAACATCCAACGAACGATATAACTCCCCGCGCAAACAATTTCCTCACGGGATTCCGAATTTACACATATAAATAAAATCCCCCAATCATATTACTCTCAGCACCAATTTCAAATCCCTTCCTCAAAAATTACTCTCTCTAATCTCTCGATTAAGCTTCGATAATGTCAGGCCGTGGAAAAGGAGGCAAAGGATTGGGAAAAGGAGGAGCAAAGCGTCATAGGAAGGTTTTGAGGGATAACATCCAGGGAATTACGAAGCCAGCAATTCGCCGATTGGCTCGTAGAGGCGGTGTGAAGCGAATTAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCGCTGAAAAGGCAGGGAAGGACCTTGTACGGTTTCGGTGGTTAG ATGTCCGGCCGCGGAAAGGGAGGCAAGGGTTTGGGAAAAGGAGGAGCAAAGCGTCACAGGAAGGTCTTAAGAGATAACATTCAAGGCATCACAAAGCCTGCAATTCGCCGTTTGGCTCGTCGTGGAGGTGTTAAGCGAATCAGCGGTTTGATTTATGAAGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGAAAGACGGTGACCGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGGCCGTGGAAAAGGAGGCAAAGGATTGGGAAAAGGAGGAGCAAAGCGTCATAGGAAGGTTTTGAGGGATAACATCCAGGGAATTACGAAGCCAGCAATTCGCCGATTGGCTCGTAGAGGCGGTGTGAAGCGAATTAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCGCTGAAAAGGCAGGGAAGGACCTTGTACGGTTTCGGTGGTTAG ATGTCCGGCCGCGGAAAGGGAGGCAAGGGTTTGGGAAAAGGAGGAGCAAAGCGTCACAGGAAGGTCTTAAGAGATAACATTCAAGGCATCACAAAGCCTGCAATTCGCCGTTTGGCTCGTCGTGGAGGTGTTAAGCGAATCAGCGGTTTGATTTATGAAGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGAAAGACGGTGACCGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGGCCGTGGAAAAGGAGGCAAAGGATTGGGAAAAGGAGGAGCAAAGCGTCATAGGAAGGTTTTGAGGGATAACATCCAGGGAATTACGAAGCCAGCAATTCGCCGATTGGCTCGTAGAGGCGGTGTGAAGCGAATTAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATCTTTCTTGAGAATGTGATTCGCGATGCTGTGACCTACACAGAGCACGCCAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCGCTGAAAAGGCAGGGAAGGACCTTGTACGGTTTCGGTGGTTAG MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
BLAST of Lsi03G002740 vs. Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3) HSP 1 Score: 198.7 bits (504), Expect = 5.9e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Lsi03G002740 vs. Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 198.7 bits (504), Expect = 5.9e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Lsi03G002740 vs. Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3) HSP 1 Score: 198.7 bits (504), Expect = 5.9e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Lsi03G002740 vs. Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 198.7 bits (504), Expect = 5.9e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Lsi03G002740 vs. Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3) HSP 1 Score: 198.7 bits (504), Expect = 5.9e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Lsi03G002740 vs. TrEMBL
Match: A0A0B1T7Z8_OESDE (Histone H4 OS=Oesophagostomum dentatum GN=OESDEN_08635 PE=3 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 6.3e-99 Identity = 194/208 (93.27%), Postives = 198/208 (95.19%), Query Frame = 1
BLAST of Lsi03G002740 vs. TrEMBL
Match: J3LJC5_ORYBR (Histone H4 OS=Oryza brachyantha PE=3 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 3.4e-76 Identity = 165/203 (81.28%), Postives = 166/203 (81.77%), Query Frame = 1
BLAST of Lsi03G002740 vs. TrEMBL
Match: A0A0B2QV23_GLYSO (Histone H4 OS=Glycine soja GN=glysoja_035644 PE=3 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 1.7e-75 Identity = 164/203 (80.79%), Postives = 167/203 (82.27%), Query Frame = 1
BLAST of Lsi03G002740 vs. TrEMBL
Match: A0A0E0CUB4_9ORYZ (Histone H4 OS=Oryza meridionalis PE=3 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 2.8e-67 Identity = 152/203 (74.88%), Postives = 153/203 (75.37%), Query Frame = 1
BLAST of Lsi03G002740 vs. TrEMBL
Match: A0A146IHZ6_9AGAR (Histone H4 OS=Mycena chlorophos GN=MCHLO_15613 PE=3 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61 Identity = 140/187 (74.87%), Postives = 148/187 (79.14%), Query Frame = 1
BLAST of Lsi03G002740 vs. TAIR10
Match: AT1G07660.1 (AT1G07660.1 Histone superfamily protein) HSP 1 Score: 198.7 bits (504), Expect = 3.3e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Lsi03G002740 vs. TAIR10
Match: AT1G07820.1 (AT1G07820.1 Histone superfamily protein) HSP 1 Score: 198.7 bits (504), Expect = 3.3e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Lsi03G002740 vs. TAIR10
Match: AT2G28740.1 (AT2G28740.1 histone H4) HSP 1 Score: 198.7 bits (504), Expect = 3.3e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Lsi03G002740 vs. TAIR10
Match: AT3G45930.1 (AT3G45930.1 Histone superfamily protein) HSP 1 Score: 198.7 bits (504), Expect = 3.3e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Lsi03G002740 vs. TAIR10
Match: AT3G53730.1 (AT3G53730.1 Histone superfamily protein) HSP 1 Score: 198.7 bits (504), Expect = 3.3e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of Lsi03G002740 vs. NCBI nr
Match: gi|697163250|ref|XP_009590447.1| (PREDICTED: uncharacterized protein LOC104087621 [Nicotiana tomentosiformis]) HSP 1 Score: 382.5 bits (981), Expect = 4.6e-103 Identity = 203/209 (97.13%), Postives = 203/209 (97.13%), Query Frame = 1
BLAST of Lsi03G002740 vs. NCBI nr
Match: gi|971575188|ref|XP_006361210.2| (PREDICTED: uncharacterized protein LOC102591967 [Solanum tuberosum]) HSP 1 Score: 380.2 bits (975), Expect = 2.3e-102 Identity = 201/209 (96.17%), Postives = 203/209 (97.13%), Query Frame = 1
BLAST of Lsi03G002740 vs. NCBI nr
Match: gi|734650501|ref|XP_010754582.1| (PREDICTED: uncharacterized protein LOC104939729 [Larimichthys crocea]) HSP 1 Score: 379.4 bits (973), Expect = 3.9e-102 Identity = 199/209 (95.22%), Postives = 203/209 (97.13%), Query Frame = 1
BLAST of Lsi03G002740 vs. NCBI nr
Match: gi|820862557|ref|XP_003697961.2| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100867584 [Apis florea]) HSP 1 Score: 379.0 bits (972), Expect = 5.1e-102 Identity = 198/207 (95.65%), Postives = 203/207 (98.07%), Query Frame = 1
BLAST of Lsi03G002740 vs. NCBI nr
Match: gi|943955176|ref|XP_014360551.1| (PREDICTED: uncharacterized protein LOC106707658 [Papilio machaon]) HSP 1 Score: 378.3 bits (970), Expect = 8.7e-102 Identity = 198/209 (94.74%), Postives = 203/209 (97.13%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |