CsaV3_5G030510 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G030510
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTRAM/LAG1/CLN8 domain containing protein
Locationchr5 : 25062192 .. 25063827 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGAATTAACAATTGATTAACGTCAAAGTAGAAGAATAAAAGAAAGAACAAAGAAATTTCATATTGAGTTTCATATTATATTAGGCAACCAAAGATTGGGTAAACATTTTCCCACCAAAGACATCTATTCCTTATCTAATCTTCACCAATCAAATACAATTTAAAAATTCAAATCAAGCATAAATATATACACATAATCACATAATTAACCGTGCACGATACTTAAAATCTAATCCCCAATCCTAATCCCAAAACAATTTCATCATTATAAACCCTAATCCAATCATAACTCACTACGTAATAAGAAACCAAGAAATCGCATTAATCTCATCATCACCATCAATGGACCTTCAGTTACCTCTCTTCTTCGCCATGTTTCTATTCGTCTACACCTTCGCTTACTCAGTTCTCCTTCGAAATTGGGGGCCAAAGCACAGATTAGAAGCTTCAAGTTGCTTCATATCCCTCGCCCATGGCACTCCGGTCGTAATCCTCGCCGCAATCGCAATTCTCCAATCCCCAAATTCAACCGATTTTGCCGCTCCAAACACCAAATTCCAAGCACTAGTTCTCGAATACAGCATAGCGTATTTCTCACTGGATCTTCTTCATTGCCTATTGTTTTCTCCAAATGATTTCGTCTTCATATTTCATCATCTAGCAGTGCTTTACGTCTTCGTTACATGTAATTACATTGTTGGTTGTGGGGCTGTACCGATTCTAGGGCTGTTGGTGGTGGCGGAATTGAGCAGTGGGTGCCAAAATGCTTGGACCCTTGCGGGGTATAGAAGGACGGAAATGGTAGCCGCGGCTAAGTTTGAGGAGTTTGTGGCTCCGTATTTCTTAACGTTTTATAGTGTTTTACGAGTGGGATTGGCGCCGGTGGTTGTGTGCAAAATGGGGGAATTTTATGTTGGGAGCTTGGGAATGAGTGGGAATTTGATTCCCACATGGGCTTGGATTTCTTGGATGTGTGTTATTGGTTTAGCTATTTTTGGTAGTGTGTTGTGGGTTGGAAATCATTGGCTTCTTTGGTTTCACCGCATAACCAATACAAAATCGTAAGTTTGTCTATATCTCACTGAATTGTTTAATTATAATTTGACATAAATTCGATCTTTTGTGTGTAAAGTACGAGTAAGCATGGAAGACCAAAAAACCAAACCTAAATGAGTTGATTTAGGTCGAAAGGGCAAGATCCATTTATTAGTCTAGTTAAATTTATTTGATATGTTTAAAAAATCCTCCACATTTTATTTATTTACTGCCAATTTTTAATGCAAATGATTTTATTTTGTAGTATATTTTTATGTTTTTATTAATTAACCTCGAAAAAGTGGGAGAGAAATGAAAGAGAGTAGAAAGCAAAACAAAAAAGAGACAAAATTGACTGACCGAAAGTCAGTTTGGTCAGTTTTGTTGCTAACGTCAGGTCAACAACTTCCATACATGGTCGGTCGAAGTTGGGTTGATTGATCGATCGTTGATCACTCCTAGTGTAATGATAACTTGATCGACCGTTGTCACCCCTAGTGTAATGATAACTTGACCGACCGTTGTCACCCCAGTGTAATGATAACTTGATACGTATAAAATTGAAAGTTCATTCCTAATAGAAAAATATATTTAGTTGCG

mRNA sequence

ATGGACCTTCAGTTACCTCTCTTCTTCGCCATGTTTCTATTCGTCTACACCTTCGCTTACTCAGTTCTCCTTCGAAATTGGGGGCCAAAGCACAGATTAGAAGCTTCAAGTTGCTTCATATCCCTCGCCCATGGCACTCCGGTCGTAATCCTCGCCGCAATCGCAATTCTCCAATCCCCAAATTCAACCGATTTTGCCGCTCCAAACACCAAATTCCAAGCACTAGTTCTCGAATACAGCATAGCGTATTTCTCACTGGATCTTCTTCATTGCCTATTGTTTTCTCCAAATGATTTCGTCTTCATATTTCATCATCTAGCAGTGCTTTACGTCTTCGTTACATGTAATTACATTGTTGGTTGTGGGGCTGTACCGATTCTAGGGCTGTTGGTGGTGGCGGAATTGAGCAGTGGGTGCCAAAATGCTTGGACCCTTGCGGGGTATAGAAGGACGGAAATGGTAGCCGCGGCTAAGTTTGAGGAGTTTGTGGCTCCGTATTTCTTAACGTTTTATAGTGTTTTACGAGTGGGATTGGCGCCGGTGGTTGTGTGCAAAATGGGGGAATTTTATGTTGGGAGCTTGGGAATGAGTGGGAATTTGATTCCCACATGGGCTTGGATTTCTTGGATGTGTGTTATTGGTTTAGCTATTTTTGGTAGTGTGTTGTGGGTTGGAAATCATTGGCTTCTTTGGTTTCACCGCATAACCAATACAAAATCGTAA

Coding sequence (CDS)

ATGGACCTTCAGTTACCTCTCTTCTTCGCCATGTTTCTATTCGTCTACACCTTCGCTTACTCAGTTCTCCTTCGAAATTGGGGGCCAAAGCACAGATTAGAAGCTTCAAGTTGCTTCATATCCCTCGCCCATGGCACTCCGGTCGTAATCCTCGCCGCAATCGCAATTCTCCAATCCCCAAATTCAACCGATTTTGCCGCTCCAAACACCAAATTCCAAGCACTAGTTCTCGAATACAGCATAGCGTATTTCTCACTGGATCTTCTTCATTGCCTATTGTTTTCTCCAAATGATTTCGTCTTCATATTTCATCATCTAGCAGTGCTTTACGTCTTCGTTACATGTAATTACATTGTTGGTTGTGGGGCTGTACCGATTCTAGGGCTGTTGGTGGTGGCGGAATTGAGCAGTGGGTGCCAAAATGCTTGGACCCTTGCGGGGTATAGAAGGACGGAAATGGTAGCCGCGGCTAAGTTTGAGGAGTTTGTGGCTCCGTATTTCTTAACGTTTTATAGTGTTTTACGAGTGGGATTGGCGCCGGTGGTTGTGTGCAAAATGGGGGAATTTTATGTTGGGAGCTTGGGAATGAGTGGGAATTTGATTCCCACATGGGCTTGGATTTCTTGGATGTGTGTTATTGGTTTAGCTATTTTTGGTAGTGTGTTGTGGGTTGGAAATCATTGGCTTCTTTGGTTTCACCGCATAACCAATACAAAATCGTAA

Protein sequence

MDLQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNSTDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCGAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPVVVCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTKS
Homology
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BLAST of CsaV3_5G030510 vs. NCBI nr
Match: XP_004135513.1 (PREDICTED: uncharacterized protein LOC101219781 [Cucumis sativus] >KGN51696.1 hypothetical protein Csa_5G590130 [Cucumis sativus])

HSP 1 Score: 484.2 bits (1245), Expect = 2.6e-133
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 

Query: 1   MDLQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSP 60
           MDLQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSP
Sbjct: 1   MDLQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSP 60

Query: 61  NSTDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVG 120
           NSTDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVG
Sbjct: 61  NSTDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVG 120

Query: 121 CGAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAP 180
           CGAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAP
Sbjct: 121 CGAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAP 180

Query: 181 VVVCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTKS 240
           VVVCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTKS
Sbjct: 181 VVVCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTKS 240

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BLAST of CsaV3_5G030510 vs. NCBI nr
Match: XP_008446083.1 (PREDICTED: uncharacterized protein LOC103488912 [Cucumis melo])

HSP 1 Score: 453.4 bits (1165), Expect = 4.9e-124
Identity = 224/239 (93.72%), Postives = 229/239 (95.82%), Query Frame = 0 

Query: 1   MDLQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSP 60
           MDLQLPLFF+MFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILA IAILQSP
Sbjct: 1   MDLQLPLFFSMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILATIAILQSP 60

Query: 61  NSTDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVG 120
           N TDFAAPNTKFQALVLEYSIAYFSLDLLHC+ FSPNDFVFIFHHLAVLYVFVTCNYIVG
Sbjct: 61  NPTDFAAPNTKFQALVLEYSIAYFSLDLLHCVSFSPNDFVFIFHHLAVLYVFVTCNYIVG 120

Query: 121 CGAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAP 180
           CGAVPILGLLVVAELSSGCQNAWTLAGYRRTE+VAAAKFEEFV PYFLTFYSVLRVGLAP
Sbjct: 121 CGAVPILGLLVVAELSSGCQNAWTLAGYRRTEIVAAAKFEEFVTPYFLTFYSVLRVGLAP 180

Query: 181 VVVCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTK 240
           VVVCKMGEFYVGSL MSGNLIPTWAWISW+CVIG+AIFGSVLWVGNHWLLWF    N K
Sbjct: 181 VVVCKMGEFYVGSLVMSGNLIPTWAWISWLCVIGMAIFGSVLWVGNHWLLWFRPTQNRK 239

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BLAST of CsaV3_5G030510 vs. NCBI nr
Match: XP_022956623.1 (TLC domain-containing protein At5g14285-like [Cucurbita moschata])

HSP 1 Score: 320.5 bits (820), Expect = 5.0e-84
Identity = 158/219 (72.15%), Postives = 182/219 (83.11%), Query Frame = 0 

Query: 22  VLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNSTDFAAPNTKFQALVLEYSI 81
           V+L+NWGPKHRLEASSCFISLAHG PVVI+A IAILQ+PN  DFAA NTK+Q LVLEYS+
Sbjct: 32  VVLQNWGPKHRLEASSCFISLAHGCPVVIMAIIAILQAPNMADFAALNTKYQGLVLEYSM 91

Query: 82  AYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCGAVPILGLLVVAELSSGCQN 141
           AYF +DLLH +LF P DFVFI HHLAVLYVF TC+Y+V  GA+PIL LLV+AE SSGCQN
Sbjct: 92  AYFLMDLLHFILFYPRDFVFICHHLAVLYVFATCHYLVSRGALPILVLLVLAEFSSGCQN 151

Query: 142 AWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPVVVCKMGEFYVGSLGMSGNLI 201
            WTLAGYRR ++ AAAKF++FV+PYF TFYS+LR G APV + KMGEFYV S   + NLI
Sbjct: 152 VWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVFLHKMGEFYVSS--AAENLI 211

Query: 202 PTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTKS 241
           P WAWISWM VIG AIF S+LWVGNHW+LWF R  + K+
Sbjct: 212 PKWAWISWMGVIGTAIFVSILWVGNHWVLWFRRTKHGKA 248

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BLAST of CsaV3_5G030510 vs. NCBI nr
Match: XP_023554709.1 (TLC domain-containing protein At5g14285-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.4 bits (812), Expect = 4.2e-83
Identity = 156/219 (71.23%), Postives = 182/219 (83.11%), Query Frame = 0 

Query: 22  VLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNSTDFAAPNTKFQALVLEYSI 81
           V+L+NWGPKHR+EASSCFISLAHG+PVVI+A IAILQ+PN  DFAA NTK+Q LVLEYS+
Sbjct: 31  VVLQNWGPKHRIEASSCFISLAHGSPVVIMAIIAILQAPNMADFAALNTKYQGLVLEYSM 90

Query: 82  AYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCGAVPILGLLVVAELSSGCQN 141
           AYF +DLLH +LF P DFVFI HHLAVLYVF TC+Y+V  GA+PIL LLV+AE SSGCQN
Sbjct: 91  AYFLMDLLHYILFYPRDFVFICHHLAVLYVFATCHYLVRRGALPILVLLVLAEFSSGCQN 150

Query: 142 AWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPVVVCKMGEFYVGSLGMSGNLI 201
            WTLAGYRR ++ AAAKF++FV+PYF TFYS+LR G APV + KMGEFYV S   + NLI
Sbjct: 151 VWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVFLHKMGEFYVSS--AAENLI 210

Query: 202 PTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTKS 241
           P WAWISWM VIG AI  S+LWVGNHW+LWF R  + K+
Sbjct: 211 PKWAWISWMGVIGTAILVSILWVGNHWVLWFRRTKHGKA 247

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BLAST of CsaV3_5G030510 vs. NCBI nr
Match: XP_022998555.1 (TLC domain-containing protein At5g14285-like [Cucurbita maxima])

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 154/211 (72.99%), Postives = 177/211 (83.89%), Query Frame = 0 

Query: 22  VLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNSTDFAAPNTKFQALVLEYSI 81
           V+L+NWGPKHRLEASSCFISLAHG+PVVI+A IAILQ+PN  DFAA NTK+Q LVL+YS+
Sbjct: 32  VVLQNWGPKHRLEASSCFISLAHGSPVVIMAIIAILQAPNMADFAALNTKYQGLVLQYSM 91

Query: 82  AYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCGAVPILGLLVVAELSSGCQN 141
           AYF +DLLH +LF P DFVFI HHLAVLYVF TCNY+V  GA+PIL LLV+AE SSGCQN
Sbjct: 92  AYFLMDLLHFILFYPRDFVFICHHLAVLYVFATCNYLVRRGALPILVLLVLAEFSSGCQN 151

Query: 142 AWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPVVVCKMGEFYVGSLGMSGNLI 201
            WTLAGYRR ++ AAAKF++FV+PYF TFYS+LR G APV + KMGEFYV     + NLI
Sbjct: 152 VWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVFLHKMGEFYVSR--AAENLI 211

Query: 202 PTWAWISWMCVIGLAIFGSVLWVGNHWLLWF 233
           P WAWISWM VIG AI  S+LWVGNHW+LWF
Sbjct: 212 PKWAWISWMGVIGTAILVSILWVGNHWVLWF 240

[Close]
BLAST of CsaV3_5G030510 vs. TAIR10
Match: AT3G25950.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 218.4 bits (555), Expect = 4.8e-57
Identity = 113/236 (47.88%), Postives = 157/236 (66.53%), Query Frame = 0 

Query: 6   PLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNST-- 65
           P F  +FL VYT  Y ++ R W     L A SC +SL HGTP VI+A+ A+L +P +   
Sbjct: 16  PSFLLLFLAVYTIGYFLVFRTWKQSSHLGA-SCLMSLFHGTPAVIMASHALLTTPRADVH 75

Query: 66  DFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCGA 125
            FA+PNT  ++ VL++S+AYF++DLLH L+F PNDF+FI HH+A LYVF TC + VG GA
Sbjct: 76  SFASPNTAVESNVLDFSMAYFTVDLLHYLIFLPNDFIFILHHIATLYVFATCRFAVGHGA 135

Query: 126 VPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPVVV 185
             +L LL++AE +S CQN WT+ GYR+ ++  A +  E ++P F  FY+V+R    PVV+
Sbjct: 136 HGLLLLLILAEATSACQNVWTITGYRKNDVALARRVRELLSPPFYLFYTVVRGLAGPVVL 195

Query: 186 CKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTK 240
             M  FY GS G +  ++P WAW+SW+ VIG AI  S+LWV  +WL WF    ++K
Sbjct: 196 YDMATFY-GS-GAADGVVPRWAWLSWLVVIGFAILVSILWVLRNWLDWFRENNSSK 248

[Close]
BLAST of CsaV3_5G030510 vs. TAIR10
Match: AT5G14280.1 (DNA-binding storekeeper protein-related)

HSP 1 Score: 210.7 bits (535), Expect = 1.0e-54
Identity = 112/230 (48.70%), Postives = 154/230 (66.96%), Query Frame = 0 

Query: 5   LPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNSTD 64
           LP+FF+MFL +Y  AY ++ RNW P+ R EASSC IS+ HG+P V LA  A+  S +   
Sbjct: 331 LPIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFSS-SERS 390

Query: 65  FAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCGAV 124
           FA+ NT  Q  VL++S+AYF  DL H ++F+PND +FI HH+A L+VF+TC ++V  GA 
Sbjct: 391 FASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLVFHGAC 450

Query: 125 PILGLLVVAELSSGCQNAWTLAGYRRT--EMVAAAKFEEFVAPYFLTFYSVLRVGLAPVV 184
            ILGLL++AE++S CQNAWTLAG R+   E   A K  + ++P F  FYS++R  L P+ 
Sbjct: 451 AILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRGVLGPLF 510

Query: 185 VCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWF 233
             KM  FY  + G +  +IP W WISW  V+G+AI  S+LW+ N W+  F
Sbjct: 511 FGKMVAFY--ARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWIELF 557

[Close]
BLAST of CsaV3_5G030510 vs. TAIR10
Match: AT3G27270.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-43
Identity = 101/212 (47.64%), Postives = 131/212 (61.79%), Query Frame = 0 

Query: 5   LPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNSTD 64
           LPLFF++F+FVY   Y  + + W P+ R  ASSC ISL HG   V+LA  A+L  PN   
Sbjct: 10  LPLFFSIFIFVYLLGYLFIFKKWTPETRPLASSCLISLLHGVSAVVLATNALLSDPN-RG 69

Query: 65  FAAPNTKFQALVLEYSIAYFSLDLLHCLLF-SP--NDFVFIFHHLAVLYVFVTCNYIVGC 124
           F++ NT+ Q  +L++S AYF  DL+H  +F SP   D +F  HHLAVL+VF+TC Y+V  
Sbjct: 70  FSSVNTQSQNSILDFSSAYFLADLVHLAVFPSPAGGDSLFAAHHLAVLFVFLTCRYMVAH 129

Query: 125 GAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPV 184
           GA  +L LLVVAE +S CQN WTLA  R  +   A     FV   F   YSV R  LAP+
Sbjct: 130 GACALLALLVVAEATSACQNTWTLADARGKDAPLAVSLHRFVTVPFYASYSVCRCVLAPL 189

Query: 185 VVCKMGEFYVGSLGMSGNLIPTWAWISWMCVI 214
           ++ KM  FYV   G + ++IP W W+SW  VI
Sbjct: 190 LIVKMTWFYVS--GGADDVIPRWVWVSWTVVI 218

[Close]
BLAST of CsaV3_5G030510 vs. Swiss-Prot
Match: sp|Q8GYK7|Y5285_ARATH (TLC domain-containing protein At5g14285 OS=Arabidopsis thaliana OX=3702 GN=At5g14285 PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-53
Identity = 112/230 (48.70%), Postives = 154/230 (66.96%), Query Frame = 0 

Query: 5   LPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNSTD 64
           LP+FF+MFL +Y  AY ++ RNW P+ R EASSC IS+ HG+P V LA  A+  S +   
Sbjct: 13  LPIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFSS-SERS 72

Query: 65  FAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCGAV 124
           FA+ NT  Q  VL++S+AYF  DL H ++F+PND +FI HH+A L+VF+TC ++V  GA 
Sbjct: 73  FASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLVFHGAC 132

Query: 125 PILGLLVVAELSSGCQNAWTLAGYRRT--EMVAAAKFEEFVAPYFLTFYSVLRVGLAPVV 184
            ILGLL++AE++S CQNAWTLAG R+   E   A K  + ++P F  FYS++R  L P+ 
Sbjct: 133 AILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRGVLGPLF 192

Query: 185 VCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWF 233
             KM  FY  + G +  +IP W WISW  V+G+AI  S+LW+ N W+  F
Sbjct: 193 FGKMVAFY--ARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWIELF 239

[Close]
BLAST of CsaV3_5G030510 vs. TrEMBL
Match: tr|A0A0A0KVB7|A0A0A0KVB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G590130 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 1.7e-133
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 

Query: 1   MDLQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSP 60
           MDLQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSP
Sbjct: 1   MDLQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSP 60

Query: 61  NSTDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVG 120
           NSTDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVG
Sbjct: 61  NSTDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVG 120

Query: 121 CGAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAP 180
           CGAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAP
Sbjct: 121 CGAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAP 180

Query: 181 VVVCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTKS 240
           VVVCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTKS
Sbjct: 181 VVVCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTKS 240

[Close]
BLAST of CsaV3_5G030510 vs. TrEMBL
Match: tr|A0A1S3BDR4|A0A1S3BDR4_CUCME (uncharacterized protein LOC103488912 OS=Cucumis melo OX=3656 GN=LOC103488912 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 3.3e-124
Identity = 224/239 (93.72%), Postives = 229/239 (95.82%), Query Frame = 0 

Query: 1   MDLQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSP 60
           MDLQLPLFF+MFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILA IAILQSP
Sbjct: 1   MDLQLPLFFSMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILATIAILQSP 60

Query: 61  NSTDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVG 120
           N TDFAAPNTKFQALVLEYSIAYFSLDLLHC+ FSPNDFVFIFHHLAVLYVFVTCNYIVG
Sbjct: 61  NPTDFAAPNTKFQALVLEYSIAYFSLDLLHCVSFSPNDFVFIFHHLAVLYVFVTCNYIVG 120

Query: 121 CGAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAP 180
           CGAVPILGLLVVAELSSGCQNAWTLAGYRRTE+VAAAKFEEFV PYFLTFYSVLRVGLAP
Sbjct: 121 CGAVPILGLLVVAELSSGCQNAWTLAGYRRTEIVAAAKFEEFVTPYFLTFYSVLRVGLAP 180

Query: 181 VVVCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTK 240
           VVVCKMGEFYVGSL MSGNLIPTWAWISW+CVIG+AIFGSVLWVGNHWLLWF    N K
Sbjct: 181 VVVCKMGEFYVGSLVMSGNLIPTWAWISWLCVIGMAIFGSVLWVGNHWLLWFRPTQNRK 239

[Close]
BLAST of CsaV3_5G030510 vs. TrEMBL
Match: tr|A0A2P5EB64|A0A2P5EB64_9ROSA (TRAM/LAG1/CLN8 domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_213610 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 130/229 (56.77%), Postives = 165/229 (72.05%), Query Frame = 0 

Query: 5   LPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSP-NST 64
           L  FF+MFL +Y FAY V+ RNWGPKH  EASSC ISLAHGTP  +LA  A+ +S    +
Sbjct: 13  LSTFFSMFLLIYLFAYFVVFRNWGPKHIAEASSCLISLAHGTPAFLLAINALTKSQLPLS 72

Query: 65  DFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCGA 124
            FA+PNT  Q +VL+YSIAYF +DLLH ++F P+D +FIFHHLA LYVFVTC ++V  GA
Sbjct: 73  SFASPNTNSQNIVLDYSIAYFLIDLLHYVVFFPSDVLFIFHHLATLYVFVTCRFVVHHGA 132

Query: 125 VPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPVVV 184
             +L LLV+AE++S CQN WTLA +R+ +  AA+K  E+++P F  FYSV R  L P+ V
Sbjct: 133 SALLVLLVLAEITSLCQNVWTLASFRKADTPAASKLYEYLSPRFYAFYSVFRGFLGPLFV 192

Query: 185 CKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWF 233
            KMG F++   G +  LIP WAWISWM VI  AIF S++WV NHW+ WF
Sbjct: 193 LKMGIFFIS--GAADTLIPRWAWISWMVVITTAIFVSIVWVLNHWIEWF 239

[Close]
BLAST of CsaV3_5G030510 vs. TrEMBL
Match: tr|A0A2P6R0N1|A0A2P6R0N1_ROSCH (Putative TRAM/LAG1/CLN8 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0431211 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.3e-63
Identity = 126/228 (55.26%), Postives = 163/228 (71.49%), Query Frame = 0 

Query: 5   LPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNSTD 64
           LP FF MFL +Y FA  VL R+WGPKHR EASSC ISLAH TP V +A  A++ S  ++ 
Sbjct: 11  LPTFFTMFLLIYLFARFVLFRSWGPKHRPEASSCVISLAHSTPAVFMAIHALIHSQTTSI 70

Query: 65  FAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCGAV 124
           FA+ NT F+  VLEYSIAYF +DLLH LLF P++ +FI HHLA LYVF+TC Y+V  GA 
Sbjct: 71  FASHNTAFENTVLEYSIAYFLVDLLHYLLFFPSEVLFILHHLATLYVFLTCRYVVHHGAY 130

Query: 125 PILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPVVVC 184
            I+ LL +AE++SGCQN WTLA ++R +  +AAK  +F++P F  FY+V R  L P+ + 
Sbjct: 131 AIIVLLFLAEITSGCQNVWTLASFQRDDSASAAKLYDFLSPRFYAFYTVFRGVLGPLFMF 190

Query: 185 KMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWF 233
           KMG FY    G++G  +PTWAW+SWM VI +AI  S+LWV +HW  W+
Sbjct: 191 KMGLFYAS--GVAGEEVPTWAWVSWMVVIVIAICVSILWVLSHWKDWY 236

[Close]
BLAST of CsaV3_5G030510 vs. TrEMBL
Match: tr|A0A2P5CUQ7|A0A2P5CUQ7_PARAD (TRAM/LAG1/CLN8 domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_122600 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 131/231 (56.71%), Postives = 164/231 (71.00%), Query Frame = 0 

Query: 3   LQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSP-N 62
           L L  FF+MFL +Y FAY V+ RN GPKH  EASSC ISLAHGTP V+LA  A+ +S   
Sbjct: 11  LSLSTFFSMFLLIYLFAYFVVFRNRGPKHIAEASSCLISLAHGTPAVLLAINALTKSQLT 70

Query: 63  STDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGC 122
            + FA+PNT  Q +VL+YSIAYF +DLLH ++F P+D +FI HHLA LYVF TC ++V  
Sbjct: 71  LSPFASPNTNSQNIVLDYSIAYFLIDLLHYVVFFPSDVLFICHHLATLYVFTTCRFVVHH 130

Query: 123 GAVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPV 182
           GA  +L LLV+AE++S CQN WTLA +R+ +  AA+K  EF++P F  FYSV R  L P+
Sbjct: 131 GASALLVLLVLAEITSLCQNVWTLASFRKADTPAASKLYEFLSPRFYAFYSVFRGFLGPL 190

Query: 183 VVCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWF 233
            V KMG F++   G +  LIP WAWISWM VI  AIF S+LWV NHW+ WF
Sbjct: 191 FVLKMGIFFIS--GAADTLIPRWAWISWMVVITTAIFVSILWVLNHWIEWF 239

The following BLAST results are available for this feature:
BLAST of CsaV3_5G030510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135513.12.6e-133100.00PREDICTED: uncharacterized protein LOC101219781 [Cucumis sativus] >KGN51696.1 hy... [more]
XP_008446083.14.9e-12493.72PREDICTED: uncharacterized protein LOC103488912 [Cucumis melo][more]
XP_022956623.15.0e-8472.15TLC domain-containing protein At5g14285-like [Cucurbita moschata][more]
XP_023554709.14.2e-8371.23TLC domain-containing protein At5g14285-like [Cucurbita pepo subsp. pepo][more]
XP_022998555.11.4e-8172.99TLC domain-containing protein At5g14285-like [Cucurbita maxima][more]
BLAST of CsaV3_5G030510 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G25950.14.8e-5747.88TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein[more]
AT5G14280.11.0e-5448.70DNA-binding storekeeper protein-related[more]
AT3G27270.11.0e-4347.64TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein[more]
BLAST of CsaV3_5G030510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8GYK7|Y5285_ARATH1.8e-5348.70TLC domain-containing protein At5g14285 OS=Arabidopsis thaliana OX=3702 GN=At5g1... [more]
BLAST of CsaV3_5G030510 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVB7|A0A0A0KVB7_CUCSA1.7e-133100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G590130 PE=4 SV=1[more]
tr|A0A1S3BDR4|A0A1S3BDR4_CUCME3.3e-12493.72uncharacterized protein LOC103488912 OS=Cucumis melo OX=3656 GN=LOC103488912 PE=... [more]
tr|A0A2P5EB64|A0A2P5EB64_9ROSA1.4e-6356.77TRAM/LAG1/CLN8 domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33... [more]
tr|A0A2P6R0N1|A0A2P6R0N1_ROSCH9.3e-6355.26Putative TRAM/LAG1/CLN8 domain-containing protein OS=Rosa chinensis OX=74649 GN=... [more]
tr|A0A2P5CUQ7|A0A2P5CUQ7_PARAD2.1e-6256.71TRAM/LAG1/CLN8 domain containing protein OS=Parasponia andersonii OX=3476 GN=Pan... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G030510.1CsaV3_5G030510.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006634TRAM/LAG1/CLN8 homology domainSMARTSM00724lag1_27coord: 30..236
e-value: 9.4E-14
score: 61.7
NoneNo IPR availablePANTHERPTHR31766FAMILY NOT NAMEDcoord: 3..236

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G030510CSPI05G21640Wild cucumber (PI 183967)cpicucB284
CsaV3_5G030510Cucsa.075480Cucumber (Gy14) v1cgycucB076
CsaV3_5G030510CmaCh04G018170Cucurbita maxima (Rimu)cmacucB0886
CsaV3_5G030510CmoCh04G019120Cucurbita moschata (Rifu)cmocucB0875
CsaV3_5G030510Cp4.1LG01g16050Cucurbita pepo (Zucchini)cpecucB0544
CsaV3_5G030510Carg14276Silver-seed gourdcarcucB0274
CsaV3_5G030510Cla022991Watermelon (97103) v1cucwmB458
CsaV3_5G030510MELO3C011890Melon (DHL92) v3.5.1cucmeB381
CsaV3_5G030510ClCG11G013900Watermelon (Charleston Gray)cucwcgB375
CsaV3_5G030510Lsi04G006570Bottle gourd (USVL1VR-Ls)cuclsiB393
CsaV3_5G030510MELO3C011890.2Melon (DHL92) v3.6.1cucmedB375
CsaV3_5G030510Cla97C11G219880Watermelon (97103) v2cucwmbB373
CsaV3_5G030510Bhi07G001506Wax gourdcucwgoB523
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G030510Cucumber (Chinese Long) v3cuccucB084
CsaV3_5G030510Silver-seed gourdcarcucB0658
CsaV3_5G030510Silver-seed gourdcarcucB0730
CsaV3_5G030510Cucumber (Gy14) v2cgybcucB083
CsaV3_5G030510Cucumber (Gy14) v2cgybcucB232
CsaV3_5G030510Cucumber (Gy14) v1cgycucB599
CsaV3_5G030510Cucurbita maxima (Rimu)cmacucB0218
CsaV3_5G030510Cucurbita maxima (Rimu)cmacucB0495
CsaV3_5G030510Cucurbita maxima (Rimu)cmacucB0948
CsaV3_5G030510Cucurbita moschata (Rifu)cmocucB0206
CsaV3_5G030510Cucurbita pepo (Zucchini)cpecucB1030
CsaV3_5G030510Cucurbita moschata (Rifu)cmocucB0484
CsaV3_5G030510Cucurbita moschata (Rifu)cmocucB0934
CsaV3_5G030510Cucurbita pepo (Zucchini)cpecucB0051
CsaV3_5G030510Cucurbita pepo (Zucchini)cpecucB0130
CsaV3_5G030510Wild cucumber (PI 183967)cpicucB105
CsaV3_5G030510Bottle gourd (USVL1VR-Ls)cuclsiB413
CsaV3_5G030510Melon (DHL92) v3.5.1cucmeB402
CsaV3_5G030510Melon (DHL92) v3.6.1cucmedB395
CsaV3_5G030510Watermelon (Charleston Gray)cucwcgB431
CsaV3_5G030510Watermelon (97103) v1cucwmB399
CsaV3_5G030510Watermelon (97103) v2cucwmbB417
CsaV3_5G030510Wax gourdcucwgoB501