CsaV3_5G028230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G028230
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRNA-dependent RNA polymerase
Locationchr5 : 23323285 .. 23327886 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGATCATTACTTTTCTTTTTGCTTCACACTGCTTCCAATATTCTTCAGGTTCCTTCTCTTTCTCTCAGCTTTCTATTTGAATTGTTGTATTCTGTTGTGTTTTTGTACCCAACAAAAATTATATTGTCATCCAACTCATCAAATTCAACACACATTTGAAAACATATTTCCCCACACACTAATTTTAGTTTTAGTTTTCTCTCATACTAGACTTCTTTATTAAATCTTTTTTAAATGGATACATGGAATGAAAATTTTACACTTGCCAAATATGAGCTCTCCATATATAGTTTTGATGGACGTCCTAACATCACACAAATTCATATATCCATTATCTACTTTCAAAAACATGCAGCTGAAAAACAAATTGCTACAATACAATAAACAACGACATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCCAGGTGACCGCCGACGAGGTGAAAGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCAACGGTGCGGATTTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAACTGTGGTTCGAAAGTTCATATTTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAATGAAACCAAGGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCACTTGGGAAGCATGATTTCGAACGGGAAAATGAGAGTGATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGATTTAGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTCGTTGCCCTCTCAACGAACCTTCCAAGTTTTTTCTCATTCAGGTTTCTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTCATTACTTAAATTCAACTAAAAAACAAAATATATATGATCTCCATGCATGTTAATGTGAATGTTATTAGGTTTGTTATATTATATTGAATTTTGTTTAAATTGTGTGCAGTTGCAGGGTGCTCCACGAATTTTCAGGAAAACTCCATCATCTTCCTCCTCACCATTATATTCCAACAAATCCACTAGTTTTCGTTGGATTAGGGATGTGGATTTCACTCCATCTTCCTGCATTGGACAATCCTTTACTATATGCCTCCAACTTTCTCCTTCACATCACCTTCCTCCTTTCTTCCAAACATTGGTTGGCTACAAAGTGACCTATGCTCCATTCATTCTCCATAAAGGTTCTTCTCTCGTTTCAAATTCAAATTTGGTTCCTATCATTACTCCACCCCAAGCTTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCCTCCTTCAACATGGTTATCTTTCTGGACCGACGCTAGATGATGAATTTTTTCGACTTGTTGATTCAAGTAGATTTCATTCTGACTACATTGACCACGCCTTAGAAAAACTGTTTAATTTGAAGGAATGTTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCATACTACACCTCTAATCAGCTTCCATGGAAATCTAATATTTCTCTAGATGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTACTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCGTTTTATTGGTGATATAGATAATTTTCTTCGTGTATCTTTTGTTGATGAGGAATTGGATAAACTTCATTCCATTGATCTAGCTCCACGTTCATCATCTCATGAAAATAGTCAAAGAACTAGAGTATATGATAGAGTAGTATCTGTGTTAAAAAATGGTATAGTCATTGGTAATAAAAAGTTTGAGTTTCTGGCTTTTTCGGCTAGTCAATTAAGGGAAAATTCTTTTTGGATGTTTGCTTCGAGGGAGGGGCTAAGTGCAGCAGATATCAGAGAATGGATGGGTGACTTTCATCATATAAGAAATGTGGCAAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCATCTAGAAAAACATTGTGTGTTGAAGAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAGGAAGAACATTATATATTGCTTCTCTGATGGGATTGGAAAAATATCTAAAACATTAGCTAAGAAAGTTGCTGAAAAATGTGGTTTGATCAATCATACACCATCTGCCTTTCAGATTCGATATGCTGGATACAAAGGTGTTGTAGCTATTGACCCTACGTCAAAAAAGAAATTGTCATTACGAAATAGTATGTTGAAGTATATGTCACTCGATACACAACTTGATGTTTTGTCGTGGAGTAAGTATCAACCATGTTTTCTTAATCGCCAGGTGATAAACCTTTTATCAACTCTTGGAATTGGGGACGATGTTTTTGTAAAAAAACAAAAGGAGGCTATAGATCAACTAGATTCTATTTTGGAAGATCCATCAAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCTGGAGAAATGACTAGTATTTTGAAGGAACTACTTTCGTTTTACATGCCAAATGAAGAACCTTTTCTAAATATGATGTTGCGGACATTTCGAGCAAATAAATTGTTAGATTTAAAGACCAAGTCAAGGATATTTGTTCCGGAGGGAAGGACAATGATTGGTTGCCTGGATGAAACTCGAACACTAGAATATGGGCAAGTGTTTGTTCATTGCTCTGTCCCGCGAAGATCAAGCGAGGGTAATTTTGTAGTTAAGGGTAAAATAGTTGTTGCTAAAAATCCATGTTTACATCCGGGGGACGTGCGTGTGCTCGATGCTGTTGATGTGAAAGCTCTACATCACATGGTGGATTGTGTTGTTTTCCCACAGAAAGGAAAAAGGTAGGAAAGCTTACTATGTAGGAATTACTTATCTATTGGGTGTTTATCACATATCTATATTTGTTGCAAGTTCATTTATTTCATGTTTGCATGTAACTCATTTCTTAAAGATTTGTATTAAGTTACGTACATATATCCATTAGCTAGTCTATTTTTTGTAGCAATATTTTTTTTAATAGTTGTCCTTAACTAATATTTCAATATATTATATTAGGCCTCACCCAAACGAGTGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGCTTGTTGGGATTTGGAGCTAACTTGCATCAAACAAGTCAAACCTATGAACTACGAGCCTGCACCAACTATACAATTGAATCATGATGTCACAATTGAGGTGTGTTTTTAAGTTGTACTATGACTATTTCAAATATCTTCATCGATTGTTATTTTTGTATAAATAATAACATGCATGCATTTGTTTCGGATTAAAAGTTTACAAGAATTTTTTTATTCTACAATGAGTTTTAATTAAATATGATTATTTTGATATAGGAAATTCAAGAATATTTTGCCAATTACATGGTGAATGATGGTATTGGAGCCATTGCAAATGCCCACACTGTCTTTGCAGATAAGAACTCTAAGAAGGCAATGAGTGTTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCAAAGACTGGTGTGCCAGCAAACTTGCCACGCAACCTTCGTGTTCACGAGTATCCTGATTTCATGGACAAGCCCAATAAACCAACTTATGTATCAAATGGTGTTCTTGGGAAGCTTTTTAGAGGAGTGAAAGATGTTTCATCTGATGTCAACACCTTTGAAATTTTCACTAGGGAAGTTGCTACCAAGTACTACGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATCTAAGAGAAGCTTTTGATTACAAAACTAAGTACGACTTCAAATTGGGGAACCTTATGGATTATTATGGTATTAAAACAGAACCTGAATTAGTTAGTGGAAATGTCTTGAAGATGGCGAAGTCTTTTGATAAAAGGAATGACTTGGAACAAATTACCTTTGCTATGAAGTCTCTAAGAAAGGAGGTCAGGTCTTGGTTCAATGAGAATGAAAGTAAATTTACATACGACGACATTGAAGACGAATACGCAAAAGCATCCGCATGGTACTATGTCACATATCACCCAGATTATTGGGGTTGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAACTTATTCAAATCAAAAGAGATAAGATGACATTGAAGAATTCTTACCCAGTGTCATCATTATTCCACAATTTTGACGGGTGAGTTTGTACTAACTTTTGGAGGCCAAGCAATGTTTTGCATTATGATCATATTTATAATTTTAGCTTGTGAGATATACTATGTGTTAATATTGTAATTCTATAAATCTTTTTTAATAGGTGTTATATGCTTAAAAGAGATTGTGATGAGATGATCAAAAGGTTTGATGCCTCTGTATCCCTAATTTATATGTCCCTACTTAATGAGATGAATTTTAGAGTTTTCCGTATGAAATTGTATGCCTAATTTATATGTCCCTACTTAATGAGATGAATTTTAGAGTTTTCTGTATGAAATTGTATGCTTCATATAATAGATGATAATAATAAATTCAACAATCTTC

mRNA sequence

ATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCCAGGTGACCGCCGACGAGGTGAAAGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCAACGGTGCGGATTTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAACTGTGGTTCGAAAGTTCATATTTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAATGAAACCAAGGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCACTTGGGAAGCATGATTTCGAACGGGAAAATGAGAGTGATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGATTTAGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTCGTTGCCCTCTCAACGAACCTTCCAAGTTTTTTCTCATTCAGTTGCAGGGTGCTCCACGAATTTTCAGGAAAACTCCATCATCTTCCTCCTCACCATTATATTCCAACAAATCCACTAGTTTTCGTTGGATTAGGGATGTGGATTTCACTCCATCTTCCTGCATTGGACAATCCTTTACTATATGCCTCCAACTTTCTCCTTCACATCACCTTCCTCCTTTCTTCCAAACATTGGTTGGCTACAAAGTGACCTATGCTCCATTCATTCTCCATAAAGGTTCTTCTCTCGTTTCAAATTCAAATTTGGTTCCTATCATTACTCCACCCCAAGCTTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCCTCCTTCAACATGGTTATCTTTCTGGACCGACGCTAGATGATGAATTTTTTCGACTTGTTGATTCAAGTAGATTTCATTCTGACTACATTGACCACGCCTTAGAAAAACTGTTTAATTTGAAGGAATGTTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCATACTACACCTCTAATCAGCTTCCATGGAAATCTAATATTTCTCTAGATGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTACTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCGTTTTATTGGTGATATAGATAATTTTCTTCGTGTATCTTTTGTTGATGAGGAATTGGATAAACTTCATTCCATTGATCTAGCTCCACGTTCATCATCTCATGAAAATAGTCAAAGAACTAGAGTATATGATAGAGTAGTATCTGTGTTAAAAAATGGTATAGTCATTGGTAATAAAAAGTTTGAGTTTCTGGCTTTTTCGGCTAGTCAATTAAGGGAAAATTCTTTTTGGATGTTTGCTTCGAGGGAGGGGCTAAGTGCAGCAGATATCAGAGAATGGATGGGTGACTTTCATCATATAAGAAATGTGGCAAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCATCTAGAAAAACATTGTGTGTTGAAGAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAGGAAGAACATTATATATTGCTTCTCTGATGGGATTGGAAAAATATCTAAAACATTAGCTAAGAAAGTTGCTGAAAAATGTGGTTTGATCAATCATACACCATCTGCCTTTCAGATTCGATATGCTGGATACAAAGGTGTTGTAGCTATTGACCCTACGTCAAAAAAGAAATTGTCATTACGAAATAGTATGTTGAAGTATATGTCACTCGATACACAACTTGATGTTTTGTCGTGGAGTAAGTATCAACCATGTTTTCTTAATCGCCAGGTGATAAACCTTTTATCAACTCTTGGAATTGGGGACGATGTTTTTGTAAAAAAACAAAAGGAGGCTATAGATCAACTAGATTCTATTTTGGAAGATCCATCAAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCTGGAGAAATGACTAGTATTTTGAAGGAACTACTTTCGTTTTACATGCCAAATGAAGAACCTTTTCTAAATATGATGTTGCGGACATTTCGAGCAAATAAATTGTTAGATTTAAAGACCAAGTCAAGGATATTTGTTCCGGAGGGAAGGACAATGATTGGTTGCCTGGATGAAACTCGAACACTAGAATATGGGCAAGTGTTTGTTCATTGCTCTGTCCCGCGAAGATCAAGCGAGGGTAATTTTGTAGTTAAGGGTAAAATAGTTGTTGCTAAAAATCCATGTTTACATCCGGGGGACGTGCGTGTGCTCGATGCTGTTGATGTGAAAGCTCTACATCACATGGTGGATTGTGTTGTTTTCCCACAGAAAGGAAAAAGGCCTCACCCAAACGAGTGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGCTTGTTGGGATTTGGAGCTAACTTGCATCAAACAAGTCAAACCTATGAACTACGAGCCTGCACCAACTATACAATTGAATCATGATGTCACAATTGAGGAAATTCAAGAATATTTTGCCAATTACATGGTGAATGATGGTATTGGAGCCATTGCAAATGCCCACACTGTCTTTGCAGATAAGAACTCTAAGAAGGCAATGAGTGTTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCAAAGACTGGTGTGCCAGCAAACTTGCCACGCAACCTTCGTGTTCACGAGTATCCTGATTTCATGGACAAGCCCAATAAACCAACTTATGTATCAAATGGTGTTCTTGGGAAGCTTTTTAGAGGAGTGAAAGATGTTTCATCTGATGTCAACACCTTTGAAATTTTCACTAGGGAAGTTGCTACCAAGTACTACGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATCTAAGAGAAGCTTTTGATTACAAAACTAAGTACGACTTCAAATTGGGGAACCTTATGGATTATTATGGTATTAAAACAGAACCTGAATTAGTTAGTGGAAATGTCTTGAAGATGGCGAAGTCTTTTGATAAAAGGAATGACTTGGAACAAATTACCTTTGCTATGAAGTCTCTAAGAAAGGAGGTCAGGTCTTGGTTCAATGAGAATGAAAGTAAATTTACATACGACGACATTGAAGACGAATACGCAAAAGCATCCGCATGGTACTATGTCACATATCACCCAGATTATTGGGGTTGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAACTTATTCAAATCAAAAGAGATAAGATGACATTGAAGAATTCTTACCCAGTGTCATCATTATTCCACAATTTTGACGGGTGA

Coding sequence (CDS)

ATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCCAGGTGACCGCCGACGAGGTGAAAGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCAACGGTGCGGATTTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAACTGTGGTTCGAAAGTTCATATTTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAATGAAACCAAGGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCACTTGGGAAGCATGATTTCGAACGGGAAAATGAGAGTGATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGATTTAGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTCGTTGCCCTCTCAACGAACCTTCCAAGTTTTTTCTCATTCAGTTGCAGGGTGCTCCACGAATTTTCAGGAAAACTCCATCATCTTCCTCCTCACCATTATATTCCAACAAATCCACTAGTTTTCGTTGGATTAGGGATGTGGATTTCACTCCATCTTCCTGCATTGGACAATCCTTTACTATATGCCTCCAACTTTCTCCTTCACATCACCTTCCTCCTTTCTTCCAAACATTGGTTGGCTACAAAGTGACCTATGCTCCATTCATTCTCCATAAAGGTTCTTCTCTCGTTTCAAATTCAAATTTGGTTCCTATCATTACTCCACCCCAAGCTTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCCTCCTTCAACATGGTTATCTTTCTGGACCGACGCTAGATGATGAATTTTTTCGACTTGTTGATTCAAGTAGATTTCATTCTGACTACATTGACCACGCCTTAGAAAAACTGTTTAATTTGAAGGAATGTTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCATACTACACCTCTAATCAGCTTCCATGGAAATCTAATATTTCTCTAGATGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTACTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCGTTTTATTGGTGATATAGATAATTTTCTTCGTGTATCTTTTGTTGATGAGGAATTGGATAAACTTCATTCCATTGATCTAGCTCCACGTTCATCATCTCATGAAAATAGTCAAAGAACTAGAGTATATGATAGAGTAGTATCTGTGTTAAAAAATGGTATAGTCATTGGTAATAAAAAGTTTGAGTTTCTGGCTTTTTCGGCTAGTCAATTAAGGGAAAATTCTTTTTGGATGTTTGCTTCGAGGGAGGGGCTAAGTGCAGCAGATATCAGAGAATGGATGGGTGACTTTCATCATATAAGAAATGTGGCAAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCATCTAGAAAAACATTGTGTGTTGAAGAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAGGAAGAACATTATATATTGCTTCTCTGATGGGATTGGAAAAATATCTAAAACATTAGCTAAGAAAGTTGCTGAAAAATGTGGTTTGATCAATCATACACCATCTGCCTTTCAGATTCGATATGCTGGATACAAAGGTGTTGTAGCTATTGACCCTACGTCAAAAAAGAAATTGTCATTACGAAATAGTATGTTGAAGTATATGTCACTCGATACACAACTTGATGTTTTGTCGTGGAGTAAGTATCAACCATGTTTTCTTAATCGCCAGGTGATAAACCTTTTATCAACTCTTGGAATTGGGGACGATGTTTTTGTAAAAAAACAAAAGGAGGCTATAGATCAACTAGATTCTATTTTGGAAGATCCATCAAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCTGGAGAAATGACTAGTATTTTGAAGGAACTACTTTCGTTTTACATGCCAAATGAAGAACCTTTTCTAAATATGATGTTGCGGACATTTCGAGCAAATAAATTGTTAGATTTAAAGACCAAGTCAAGGATATTTGTTCCGGAGGGAAGGACAATGATTGGTTGCCTGGATGAAACTCGAACACTAGAATATGGGCAAGTGTTTGTTCATTGCTCTGTCCCGCGAAGATCAAGCGAGGGTAATTTTGTAGTTAAGGGTAAAATAGTTGTTGCTAAAAATCCATGTTTACATCCGGGGGACGTGCGTGTGCTCGATGCTGTTGATGTGAAAGCTCTACATCACATGGTGGATTGTGTTGTTTTCCCACAGAAAGGAAAAAGGCCTCACCCAAACGAGTGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGCTTGTTGGGATTTGGAGCTAACTTGCATCAAACAAGTCAAACCTATGAACTACGAGCCTGCACCAACTATACAATTGAATCATGATGTCACAATTGAGGAAATTCAAGAATATTTTGCCAATTACATGGTGAATGATGGTATTGGAGCCATTGCAAATGCCCACACTGTCTTTGCAGATAAGAACTCTAAGAAGGCAATGAGTGTTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCAAAGACTGGTGTGCCAGCAAACTTGCCACGCAACCTTCGTGTTCACGAGTATCCTGATTTCATGGACAAGCCCAATAAACCAACTTATGTATCAAATGGTGTTCTTGGGAAGCTTTTTAGAGGAGTGAAAGATGTTTCATCTGATGTCAACACCTTTGAAATTTTCACTAGGGAAGTTGCTACCAAGTACTACGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATCTAAGAGAAGCTTTTGATTACAAAACTAAGTACGACTTCAAATTGGGGAACCTTATGGATTATTATGGTATTAAAACAGAACCTGAATTAGTTAGTGGAAATGTCTTGAAGATGGCGAAGTCTTTTGATAAAAGGAATGACTTGGAACAAATTACCTTTGCTATGAAGTCTCTAAGAAAGGAGGTCAGGTCTTGGTTCAATGAGAATGAAAGTAAATTTACATACGACGACATTGAAGACGAATACGCAAAAGCATCCGCATGGTACTATGTCACATATCACCCAGATTATTGGGGTTGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAACTTATTCAAATCAAAAGAGATAAGATGACATTGAAGAATTCTTACCCAGTGTCATCATTATTCCACAATTTTGACGGGTGA

Protein sequence

MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG
Homology
[Close]
BLAST of CsaV3_5G028230 vs. NCBI nr
Match: AOW73471.1 (RNA-dependent RNA polymerase 1c2, partial [Cucumis sativus])

HSP 1 Score: 2273.8 bits (5891), Expect = 0.0e+00
Identity = 1114/1115 (99.91%), Postives = 1115/1115 (100.00%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQL+ENSFWMFASREGLSA
Sbjct: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLKENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
            TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
            SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG
Sbjct: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115

[Close]
BLAST of CsaV3_5G028230 vs. NCBI nr
Match: KGN51474.1 (hypothetical protein Csa_5G564290 [Cucumis sativus])

HSP 1 Score: 2271.5 bits (5885), Expect = 0.0e+00
Identity = 1113/1115 (99.82%), Postives = 1114/1115 (99.91%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVA ETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNI+YCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
            TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
            SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG
Sbjct: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115

[Close]
BLAST of CsaV3_5G028230 vs. NCBI nr
Match: XP_011655453.1 (PREDICTED: probable RNA-dependent RNA polymerase 1 [Cucumis sativus])

HSP 1 Score: 2271.5 bits (5885), Expect = 0.0e+00
Identity = 1113/1115 (99.82%), Postives = 1114/1115 (99.91%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVA ETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNI+YCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
            TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
            SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG
Sbjct: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115

[Close]
BLAST of CsaV3_5G028230 vs. NCBI nr
Match: ALM88235.1 (RNA-dependent RNA polymerase 1c [Cucumis sativus])

HSP 1 Score: 2177.1 bits (5640), Expect = 0.0e+00
Identity = 1060/1111 (95.41%), Postives = 1090/1111 (98.11%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYI+HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSS ENSQRTRVYDRV+S+LKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421  APRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNI+YCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGL +HTPSAFQIRYAGYKGVVAIDPTS+KKLSLR SMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVL WSKYQPCFLNRQVINLLSTLGI DDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPN+EPFLNMMLRTFRA+KLLDL+TKSRIFVP+GRTM+GCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DET+TLEYGQVFVHCS+P RSSEGNFVVKGK+VVAKNPCLHPGDVR+LDA+DVKALHHMV
Sbjct: 721  DETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIKQVKPM+Y+PAPTIQL+HDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EE+QEYFANYMVNDG+GAIANAHTVFADKNSKKAMS ECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNK TYVSNGVLGKLFRGVKDVSSDV+ FEIFTREVATK YDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGN+LKMAKSFDKR DLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
             FAMKSLRKEVR WFNENESK TYDDI+DEYA+ASAWY VTYHPDYWGCYNEG +RDHFL
Sbjct: 1021 AFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASAWYCVTYHPDYWGCYNEGTKRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFH 1112
            SFPWCVADKLIQIKR+KM+++NS P SSL H
Sbjct: 1081 SFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111

[Close]
BLAST of CsaV3_5G028230 vs. NCBI nr
Match: ADN33705.1 (RNA-dependent RNA polymerase [Cucumis melo subsp. melo])

HSP 1 Score: 2077.4 bits (5381), Expect = 0.0e+00
Identity = 1023/1137 (89.97%), Postives = 1064/1137 (93.58%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            M KTIEIYGF P+VT DEVKEFLENHTGDGTVSTVRISKPKD+K RFTSVTV FKSKLAA
Sbjct: 1    MEKTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAK+TTEE+KLWFESSYLKARE+EK      T G  EMERMEDVKG LGSMIS  KM
Sbjct: 61   EYIVAKATTEEKKLWFESSYLKAREVEK----KATSGGPEMERMEDVKGQLGSMISKDKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKW+VEFGNG RKLWFYLSYEVD+YKMELCFENILSVEFRCPLN+PSKFFLIQ+
Sbjct: 121  RVIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLIQV 180

Query: 181  QG---------------------APRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSC 240
                                   APRIFRKTPSSSSSPLYSN+S SFRWIRDVDFTPSSC
Sbjct: 181  SSFFLXXXXXXXXXXXXXXLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSC 240

Query: 241  IGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDI 300
            IGQSFT+CLQ SPSHHLPPFFQTLVGYKVTY PFIL KGSS VSNSNLVPIITPPQAFDI
Sbjct: 241  IGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDI 300

Query: 301  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKW 360
            SYKILFKINALLQ GYLSGPTLDDEFFRLVDSSRFH DYI+HALEKLFNLKECCYKPQKW
Sbjct: 301  SYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKW 360

Query: 361  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 420
            LKDQYLSYY SNQLPWK N+SLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFI DI
Sbjct: 361  LKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDI 420

Query: 421  DNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAF 480
            DNFLRVSFVDEELDKLHSIDLAPRSSS EN+ RTRVYDRVVSVLKNGIVIG+KKFEFLAF
Sbjct: 421  DNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAF 480

Query: 481  SASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 540
            SASQLRENSFWMFASR+GLSAADIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCV+EH
Sbjct: 481  SASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEH 540

Query: 541  EIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVA 600
            EIEVIPDVEVERKNI+YCFSDGIGKISKTLAKKVA+KCGL  HTPSAFQIRYAGYKGVVA
Sbjct: 541  EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVA 600

Query: 601  IDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 660
            IDPTS+KKLSLR SMLKYMSLDTQLDVL WSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ
Sbjct: 601  IDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 660

Query: 661  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKL 720
            KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMML TFRANKL
Sbjct: 661  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKL 720

Query: 721  LDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPC 780
            LDLKTKSRIFVP GRTM+GCLDETRTLEYGQVFVHCSVP RSSEGNFVVKGK+VVAKNPC
Sbjct: 721  LDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPC 780

Query: 781  LHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIK 840
            LHPGDVR+LDA+DVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIK
Sbjct: 781  LHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIK 840

Query: 841  QVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVEC 900
            QVKPM+YEPAP+IQL+HDVTIEE+Q+YFANYMVNDG+GAIANAHTVFADKNSKKAMS EC
Sbjct: 841  QVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAEC 900

Query: 901  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 960
            IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKP+KPTYVSNGVLGKLFRGVKDVS
Sbjct: 901  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVS 960

Query: 961  SDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1020
            SDVNTFEIFT+EVATK YDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL
Sbjct: 961  SDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1020

Query: 1021 VSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIE-DEYAKASAWY 1080
            VSGN+LKMAKSFDKRNDLEQI FAMKSLRKEVRSWFNENESK+TY+DIE DEYA+ASAWY
Sbjct: 1021 VSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTYEDIEDDEYARASAWY 1080

Query: 1081 YVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
             VTYHPDYWG YNEG QRDHFLSFPWCVADKLIQIKR+KM+L+NS P+SSL +NFDG
Sbjct: 1081 CVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQYNFDG 1133

[Close]
BLAST of CsaV3_5G028230 vs. TAIR10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1)

HSP 1 Score: 1224.9 bits (3168), Expect = 0.0e+00
Identity = 626/1106 (56.60%), Postives = 795/1106 (71.88%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTI+++GF   V+A+EVK+FLE  TG GTV  +++ +PK    R  ++ V F S+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAI-VQFTSERHT 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
              I+   T    +L++  SYLKA E+E+ +V    K    +  +  +K   G  +S  K 
Sbjct: 61   RLII---TAAAERLYYGRSYLKAFEVEQDIV---PKPRASLHTISGLKMFFGCQVSTKKF 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
              +W  +   V FG G RKL F  S+   +Y++EL +ENI  ++   P    SKF +IQ+
Sbjct: 121  LTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 180

Query: 181  QGAPRIFRKTPSSSS-----SPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHH 240
             GAP+IF K     +        YS+ S   +WIR  DFT SSCIGQS   CL+L    +
Sbjct: 181  IGAPKIFEKEDQPINLLFGIMDFYSDGSDE-QWIRTTDFTSSSCIGQSTAFCLELPVHLN 240

Query: 241  LPPFFQTLVGYKVTYA-PFILHKGSSLVSNSN-LVPIITPPQAFDISYKILFKINALLQH 300
            +P F +    Y    A  F++  GSS  SN+N LVP++ PP  F + ++ILFK+N L+Q+
Sbjct: 241  VPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQN 300

Query: 301  GYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQL 360
              LSGP LD +F+RL++  ++    IDH LEKLF+L ECCY+P  WL+D+Y  + +  +L
Sbjct: 301  ACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKL 360

Query: 361  PWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELD 420
            P    ISLDDGLVY++RVQ+TP +VYF GPE N+SNRV+R +   I+NFLRVSFVDE+L+
Sbjct: 361  PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 420

Query: 421  KLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFA 480
            K+ S+DL+PRSS+    +RT++YDR+ SVL++GIVIG+KKFEFLAFS+SQLRENS WMFA
Sbjct: 421  KVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 480

Query: 481  SREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKN 540
              + ++AA IR WMGDF HIRNVAKYAARLGQSF SSR+TL V   EIEVIPDVE+    
Sbjct: 481  PIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLG 540

Query: 541  IIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNS 600
              Y FSDGIGKIS   A+KVA KCGL   +PSAFQIRY GYKGVVA+DP S KKLSLR S
Sbjct: 541  TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 600

Query: 601  MLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDP 660
            M K+ S +T+LDVL+WSKYQPC++NRQ+I LLSTLG+ D VF KKQ+E +D+LD+IL  P
Sbjct: 601  MSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHP 660

Query: 661  SRALEVLELMSPGEMTSILKEL-LSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPE 720
              A E L LM+PGE T+ILK L L  Y P+ EPFL+MML+ FRA+KLL+L+TK+RIF+  
Sbjct: 661  LEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISG 720

Query: 721  GRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVD 780
            GR+M+GCLDETRTLEYGQV V  S P R     F++ G +VVAKNPCLHPGDVRVL AV+
Sbjct: 721  GRSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVN 780

Query: 781  VKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTI 840
            V AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YF CWD EL   +  +PM+Y P PT 
Sbjct: 781  VPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQ 840

Query: 841  QLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDF 900
             L+HDVTIEE++EYFANY+VND +G IANAHT FADK   KA S  CI+LAK FS AVDF
Sbjct: 841  ILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDF 900

Query: 901  PKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREV 960
            PKTGV A +P++L V EYPDFM+KP+KPTY S  V+GKLFR VK+ +  + + + FT +V
Sbjct: 901  PKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDV 960

Query: 961  ATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFD 1020
            A+K YD DMEVDGFE+Y+ EAF  K  YDFKLGNLMDYYGIKTE E++SG +++M+KSF 
Sbjct: 961  ASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFT 1020

Query: 1021 KRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNE 1080
            KR D E I  A+++LRKE  S FN +E +      E+E AKASAWY+VTYH  YWG YNE
Sbjct: 1021 KRRDAESIGRAVRALRKETLSLFNASEEE------ENESAKASAWYHVTYHSSYWGLYNE 1080

Query: 1081 GMQRDHFLSFPWCVADKLIQIKRDKM 1099
            G+ RDHFLSF WCV DKL++IK+  +
Sbjct: 1081 GLNRDHFLSFAWCVYDKLVRIKKTNL 1088

[Close]
BLAST of CsaV3_5G028230 vs. TAIR10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2)

HSP 1 Score: 731.5 bits (1887), Expect = 7.9e-211
Identity = 436/1139 (38.28%), Postives = 650/1139 (57.07%), Query Frame = 0 

Query: 4    TIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRIS------KPKD-EKARFTSVTVLFKS 63
            T++I      + ADE+  FLE H G+ TV  + I       KP+D  + +FT++ V  ++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   KLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMIS 123
            +L          + + KL F++  L+  E    ++    + V   +R++D+   +G   S
Sbjct: 71   QL---------LSSQSKLLFKTHNLRLSEAYDDII---PRPVDPRKRLDDIVLTVGFPES 130

Query: 124  NGKMRVI---WEGEK-WSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEP 183
            + K       W+G + W +      R++ F++    D YK+E+ FE+I+     C   + 
Sbjct: 131  DEKRFCALEKWDGVRCWIL---TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDA 190

Query: 184  SKF--FLIQLQGAPRIFRK------TPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSF 243
            S+   FL++L+  P++F++      T   S    +  +   F WIR  DF+ S  IG S 
Sbjct: 191  SEIDAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTST 250

Query: 244  TICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPP-QAFDISYKI 303
              CL++     +   F  L  Y+          G +  S + +VP++       +  Y+I
Sbjct: 251  CFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEI 310

Query: 304  LFKINALLQHGYLS-GPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKD 363
            LF++NAL+    +S     D E  +++      +  +   L+KL      CY P  ++K 
Sbjct: 311  LFQLNALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKT 370

Query: 364  QYLSYYTSNQLPWKSNIS--LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDID 423
            Q  S     +    S      +  ++   R  +TP K+Y  GPE   +N VV+ F   + 
Sbjct: 371  QMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVS 430

Query: 424  NFLRVSFVDEELDKL--HSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLA 483
            +F+RV+FV+E+  KL  +++ +  +        RT +Y+RV+S+L  GI +G K+FEFLA
Sbjct: 431  DFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLA 490

Query: 484  FSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEE 543
            FSASQLR NS WMFAS E + A DIREWMG F  IR+++K AAR+GQ F +SR+TL V  
Sbjct: 491  FSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRA 550

Query: 544  HEIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVV 603
             ++E IPD+EV      YCFSDGIGKIS   AK+VA+KCGL +H PSAFQIRY GYKGV+
Sbjct: 551  QDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVI 610

Query: 604  AIDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKK 663
            A+D +S +KLSLR+SMLK+ S +  L+V  W++  PCFLNR++I LLSTLGI D +F   
Sbjct: 611  AVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAM 670

Query: 664  QKEAIDQLDSILEDPSRALEVLELMSPGEMTSIL-KELLSFYMPNEEPFLNMMLRTFRAN 723
            Q   +  L ++LED   AL VL+ +S     ++L K LL  Y P+ EP+L+MMLR    +
Sbjct: 671  QAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHES 730

Query: 724  KLLDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVP------------RRSSEGN 783
            +L +LK++ RI VP+GR +IGC+DE   LEYGQV+V  ++             R+  E  
Sbjct: 731  QLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEET 790

Query: 784  FVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHH--MVDCVVFPQKGKRPHPNECSGSDLD 843
             VV GK+VV KNPCLHPGD+RVLDA+          +DC++FPQKG+RPHPNECSG DLD
Sbjct: 791  SVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLD 850

Query: 844  GDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAH 903
            GD +F  WD ++   +   PM+Y  +    ++HDVT+EEI ++F +YM++D +G I+ AH
Sbjct: 851  GDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAH 910

Query: 904  TVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYV 963
             V AD++ +KA S +C++LA L S AVDF KTG PA +P  L+  E+PDF+++  KPTY+
Sbjct: 911  LVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYI 970

Query: 964  SNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFK 1023
            S  V GKL+R VK   S +   +       T  YD  +E  GFE ++  A  ++  Y  K
Sbjct: 971  SESVFGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEK 1030

Query: 1024 LGNLMDYYGIKTEPELVSGNVLKMAKSFDKRND------LEQITFAMKSLRKEVRSWFNE 1083
            L +LM YYG   E E+++G +LK  + +  R++       ++IT ++K L KE   WF +
Sbjct: 1031 LTSLMIYYGAANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK 1090

Query: 1084 NESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRD 1097
                 + +D + +   ASAWYYVTY+P      N   ++  FLSFPW V D L+ IK +
Sbjct: 1091 -----SCEDEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAE 1116

[Close]
BLAST of CsaV3_5G028230 vs. TAIR10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6)

HSP 1 Score: 574.7 bits (1480), Expect = 1.2e-163
Identity = 371/1017 (36.48%), Postives = 552/1017 (54.28%), Query Frame = 0 

Query: 150  EYKMELCFENILSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSF--- 209
            +YK+EL   +I +V     L+      ++QL  +PR++ +T   +   +Y          
Sbjct: 192  DYKLELLVRDIQTVRQYKTLH--GFVLILQLASSPRVWYRT---ADDDIYDTVPGDLLDD 251

Query: 210  --RWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGY---------KVTYAPFIL 269
               WIR  DFT    IG+  +  + +SP +      +T + Y         +V + P I 
Sbjct: 252  DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENK--LRTALDYFRMRRVQEERVRWPPRIR 311

Query: 270  HKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFH 329
            ++       S+    I   +   IS++I+F +N++L  G  +   L + FF L+ +    
Sbjct: 312  NEPCFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQ--P 371

Query: 330  SDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITP 389
             D    +L+ L   K   +   K LK   +  +         +    + +  + R+ ITP
Sbjct: 372  KDVNIASLKHLCTYKRPVFDAYKRLK--LVQEWIQKNPKLLGSHEQSEDISEIRRLVITP 431

Query: 390  LKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS-------IDLAPRSSSHE 449
             + Y   PE  LSNRV+RR+    + FLRV+F+DE +  ++S         +    +S  
Sbjct: 432  TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 491

Query: 450  NSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMG 509
             SQ+T V+ RV S+L +G  +  +K+ FLAFSA+QLR+ S W FA       +DI+ WMG
Sbjct: 492  FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 551

Query: 510  DFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEV-IPDVEVERKNIIYCFSDGIGKISK 569
             F   +NVAK AAR+G  F S+  T+ V  HE++  +PD+E       Y FSDGIG I+ 
Sbjct: 552  KFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITP 611

Query: 570  TLAKKVAEKCGL-INHTPSAFQIRYAGYKGVVAIDPTSKK--KLSLRNSMLKYMSLDTQL 629
             LA +V EK  L ++++P A+QIRYAG+KGVVA  P+     +L+LR+SM K+ S  T L
Sbjct: 612  DLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTIL 671

Query: 630  DVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMS 689
            ++ SW+++QP FLNRQ+I LLS LG+ D++F   Q+  + +L+ IL+D   A EVL    
Sbjct: 672  EICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASC 731

Query: 690  PGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCLDETR 749
              +  +    L + + P  EP L  ML + R  +L  L+ KSRIFV  GR ++GCLDE  
Sbjct: 732  AEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAG 791

Query: 750  TLEYGQVFVHCSVP-------------RRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAV 809
             LE+GQ F+  S P             + +     VVKG + +AKNPCLHPGDVR+L+AV
Sbjct: 792  ILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAV 851

Query: 810  DVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLEL--TCIKQVKPMNYEPA 869
            DV  LHHM DC++FPQKG RPH NE SGSDLDGDLYF  WD +L     K    M+Y+ A
Sbjct: 852  DVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAA 911

Query: 870  PTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIA 929
                L   V  ++I ++FA  + N+ +G I NAH V AD++   AM  EC+ LA+L + A
Sbjct: 912  EEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATA 971

Query: 930  VDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDV-SSDVNTFEIF 989
            VDFPKTG   ++P +L+   YPDFM K +  TY SN +LG+L+R VK+V   D       
Sbjct: 972  VDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEE 1031

Query: 990  TREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMA 1049
            + + +   YD  +E+ GFE  + EA+ +K  YD +L  L+  Y ++ E E+V+G++  M 
Sbjct: 1032 STDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMP 1091

Query: 1050 KSFDKRND--LEQITFAMKSLRKEVRSWFNENESKFTYDDIEDE------YAKASAWYYV 1109
            K   K+     E++  +  SL+KE R  F E      ++++ +E        KASAWY+V
Sbjct: 1092 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIP--DHENLSEEEKNILYEKKASAWYHV 1151

[Close]
BLAST of CsaV3_5G028230 vs. TAIR10
Match: AT2G19930.1 (RNA-dependent RNA polymerase family protein)

HSP 1 Score: 133.7 bits (335), Expect = 7.3e-31
Identity = 175/699 (25.04%), Postives = 288/699 (41.20%), Query Frame = 0 

Query: 362 DDGLVYVHRVQITPLKVY-------FCGPEANLSNRVVRRFIGDIDNFLRVSFVD-EELD 421
           D G  + ++  + P   Y         GP    +   + + +GD DN L V F D ++  
Sbjct: 198 DSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGD-DNVLTVKFADVQKSS 257

Query: 422 KLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRE------- 481
             +SID                Y     + KNGI+IG ++++F  F      E       
Sbjct: 258 STYSID---------------HYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLST 317

Query: 482 ------------NSFWMFASREGLSAADIREWMGDFHHIR---NVAKYAARLGQSFGSSR 541
                        +F+   +   L+   I E    F H+     +A Y AR      S  
Sbjct: 318 KKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLIL-SKT 377

Query: 542 KTLCVEEHEI--EVIPDV--------EVERKNIIYCF-SDGIGKISKTLAK--------- 601
           KTL V+   I  + I D+        +V  KN   C  SDG G IS+ LA+         
Sbjct: 378 KTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKG 437

Query: 602 ------KVAEKCGLINHTPSAFQIRYAGY--KGVVAID-PTSKKKLSLRNSMLKY----- 661
                  + E C         F++ Y GY  KG   ++     + + +R SM+K      
Sbjct: 438 KCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPS 497

Query: 662 ---MSLDTQLDVLSWSK-YQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDP 721
               S    L+V++ S   +   L++ ++ LLS  GI ++ F+      +++  SI  + 
Sbjct: 498 LSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNK 557

Query: 722 SRALEVLELMSPGEM-TSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPE 781
             AL     ++ GEM      +++   +P +EP L   L      +  DLK   ++ V E
Sbjct: 558 RAALNA--ALNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILLKTEKNDLKA-GKLPVTE 617

Query: 782 GRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVD 841
              ++G +D T  L+  +V   C +          + G+++V +NP LH GD+ +L A  
Sbjct: 618 SYYLMGTVDPTGALKEDEV---CVILESGQ-----ISGEVLVYRNPGLHFGDIHILKATY 677

Query: 842 VKALHHMVD----CVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKP----- 901
           VKAL   V      V FPQKG R   +E +G D DGD+YF   + EL  ++  KP     
Sbjct: 678 VKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPEL--LENFKPSEPWV 737

Query: 902 -------MNYEPAPTIQLNHDVTIEEIQEYF--ANYMVNDGIGAIANAHTVFADK----- 958
                   N   AP+ QL+ +   EE+ E F  A +  ++ IG  A++     D+     
Sbjct: 738 SLTPPSKSNSGRAPS-QLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILG 797

[Close]
BLAST of CsaV3_5G028230 vs. TAIR10
Match: AT2G19920.1 (RNA-dependent RNA polymerase family protein)

HSP 1 Score: 120.9 bits (302), Expect = 4.9e-27
Identity = 159/670 (23.73%), Postives = 279/670 (41.64%), Query Frame = 0 

Query: 356 KSNISLDDGLVYVHRVQITP-----LKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDE 415
           +  +  D G  + ++  + P     LK YF        ++V    +GD DN L V F   
Sbjct: 203 RMQLESDSGKTHYYQCHVAPDGSYRLKGYFLENTGTHLHKV----LGD-DNVLTVRF--- 262

Query: 416 ELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAF----SASQLRE 475
                   D  P+ S++ ++     Y +   + KNGI++G ++++F  F     A + + 
Sbjct: 263 --------DQLPKESTYCDNP----YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKR 322

Query: 476 NS---FWMFASREG------------LSAADIREWMGDFHHIRNV---AKYAARLGQSFG 535
           NS      +  R G            LS   I E    F H+  +   A Y AR      
Sbjct: 323 NSTKQVKCYFIRTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILS 382

Query: 536 SSRKTLCVEEHEIEV--IPDVE---------VERKNIIYCFSDGIGKISKTLAK------ 595
            ++K L V+  EI V  I D+          +++       SDG G IS+ LA+      
Sbjct: 383 KTKK-LEVDMTEITVMQIDDIHCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNI 442

Query: 596 ---------KVAEKCGLINHTPSAFQIRY----AGYKGVVAIDPT-SKKKLSLRNSMLKY 655
                     +   C  +   P   QIR     +  KG+  ++     + + +R SM+K 
Sbjct: 443 FKGKSMRSNNIQGTC--VQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKV 502

Query: 656 --------MSLDTQLDVLSWSK-YQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDS 715
                    S    L+V++ S   +   L++ ++ LLS  G+ +D F+      +++  +
Sbjct: 503 YKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKT 562

Query: 716 ILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRI 775
           I      A +        +  + L+ +++  +P +EP+L   L      +  DLK   ++
Sbjct: 563 IFFKVRAAGKAALHYGNMDDKNALQMIMA-GIPLDEPYLKHYLSKLLKLEKDDLKA-GKL 622

Query: 776 FVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVL 835
            + E   ++G +D T  L+  +V                    ++V +NP LH GD+ +L
Sbjct: 623 PIDESYYLMGTVDPTGELKEDEV------------SGLAKSQDVLVYRNPGLHFGDIHIL 682

Query: 836 DAVDVKALHHMVD----CVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKP- 895
            A  VK+L   V      V FPQKG R   +E +G D DGD+YF   + +L  ++  KP 
Sbjct: 683 KATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKL--LEHYKPS 742

Query: 896 ---MNYEPAPTIQLNH---DVTIEEIQEYFANYMVNDG------IGAIANAHTVFADK-- 933
              ++  P   I       +++ E+++E      +  G      IG  A++     D+  
Sbjct: 743 EPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFL 802

[Close]
BLAST of CsaV3_5G028230 vs. Swiss-Prot
Match: sp|Q9LQV2|RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1224.9 bits (3168), Expect = 0.0e+00
Identity = 626/1106 (56.60%), Postives = 795/1106 (71.88%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTI+++GF   V+A+EVK+FLE  TG GTV  +++ +PK    R  ++ V F S+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAI-VQFTSERHT 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
              I+   T    +L++  SYLKA E+E+ +V    K    +  +  +K   G  +S  K 
Sbjct: 61   RLII---TAAAERLYYGRSYLKAFEVEQDIV---PKPRASLHTISGLKMFFGCQVSTKKF 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
              +W  +   V FG G RKL F  S+   +Y++EL +ENI  ++   P    SKF +IQ+
Sbjct: 121  LTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 180

Query: 181  QGAPRIFRKTPSSSS-----SPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHH 240
             GAP+IF K     +        YS+ S   +WIR  DFT SSCIGQS   CL+L    +
Sbjct: 181  IGAPKIFEKEDQPINLLFGIMDFYSDGSDE-QWIRTTDFTSSSCIGQSTAFCLELPVHLN 240

Query: 241  LPPFFQTLVGYKVTYA-PFILHKGSSLVSNSN-LVPIITPPQAFDISYKILFKINALLQH 300
            +P F +    Y    A  F++  GSS  SN+N LVP++ PP  F + ++ILFK+N L+Q+
Sbjct: 241  VPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQN 300

Query: 301  GYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQL 360
              LSGP LD +F+RL++  ++    IDH LEKLF+L ECCY+P  WL+D+Y  + +  +L
Sbjct: 301  ACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKL 360

Query: 361  PWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELD 420
            P    ISLDDGLVY++RVQ+TP +VYF GPE N+SNRV+R +   I+NFLRVSFVDE+L+
Sbjct: 361  PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 420

Query: 421  KLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFA 480
            K+ S+DL+PRSS+    +RT++YDR+ SVL++GIVIG+KKFEFLAFS+SQLRENS WMFA
Sbjct: 421  KVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 480

Query: 481  SREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKN 540
              + ++AA IR WMGDF HIRNVAKYAARLGQSF SSR+TL V   EIEVIPDVE+    
Sbjct: 481  PIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLG 540

Query: 541  IIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNS 600
              Y FSDGIGKIS   A+KVA KCGL   +PSAFQIRY GYKGVVA+DP S KKLSLR S
Sbjct: 541  TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 600

Query: 601  MLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDP 660
            M K+ S +T+LDVL+WSKYQPC++NRQ+I LLSTLG+ D VF KKQ+E +D+LD+IL  P
Sbjct: 601  MSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHP 660

Query: 661  SRALEVLELMSPGEMTSILKEL-LSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPE 720
              A E L LM+PGE T+ILK L L  Y P+ EPFL+MML+ FRA+KLL+L+TK+RIF+  
Sbjct: 661  LEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISG 720

Query: 721  GRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVD 780
            GR+M+GCLDETRTLEYGQV V  S P R     F++ G +VVAKNPCLHPGDVRVL AV+
Sbjct: 721  GRSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVN 780

Query: 781  VKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTI 840
            V AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YF CWD EL   +  +PM+Y P PT 
Sbjct: 781  VPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQ 840

Query: 841  QLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDF 900
             L+HDVTIEE++EYFANY+VND +G IANAHT FADK   KA S  CI+LAK FS AVDF
Sbjct: 841  ILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDF 900

Query: 901  PKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREV 960
            PKTGV A +P++L V EYPDFM+KP+KPTY S  V+GKLFR VK+ +  + + + FT +V
Sbjct: 901  PKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDV 960

Query: 961  ATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFD 1020
            A+K YD DMEVDGFE+Y+ EAF  K  YDFKLGNLMDYYGIKTE E++SG +++M+KSF 
Sbjct: 961  ASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFT 1020

Query: 1021 KRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNE 1080
            KR D E I  A+++LRKE  S FN +E +      E+E AKASAWY+VTYH  YWG YNE
Sbjct: 1021 KRRDAESIGRAVRALRKETLSLFNASEEE------ENESAKASAWYHVTYHSSYWGLYNE 1080

Query: 1081 GMQRDHFLSFPWCVADKLIQIKRDKM 1099
            G+ RDHFLSF WCV DKL++IK+  +
Sbjct: 1081 GLNRDHFLSFAWCVYDKLVRIKKTNL 1088

[Close]
BLAST of CsaV3_5G028230 vs. Swiss-Prot
Match: sp|Q0DXS3|RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 909.4 bits (2349), Expect = 3.8e-263
Identity = 445/736 (60.46%), Postives = 567/736 (77.04%), Query Frame = 0 

Query: 378  VYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYD 437
            VYF GPE N+SNRVVR F  DI+NFLR+SFVDE+ +KL + DL+PRS+S  ++ RT +Y 
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 438  RVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVA 497
            RV+SVL +GI IG K FEFLAFS+SQLR+NS WMFASR+GL+A+DIR WMGDF +IRNVA
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 498  KYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKC 557
            KYAARLGQSF SS +TL V+++E+E I D++   +++   FSDGIGKIS   A +VA KC
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDIKNGTQHV---FSDGIGKISSAFANEVAMKC 188

Query: 558  GLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFL 617
             L    PSAFQIRY GYKGVVA+DPTS+ KLSLR SMLK+ S +  +DVL++SKYQP FL
Sbjct: 189  NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248

Query: 618  NRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKE-LL 677
            NRQ+I LLSTLG+ D VF +KQ+EA++QL+ ++ DP  A+E +ELM  GE+T+ +KE LL
Sbjct: 249  NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308

Query: 678  SFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCS 737
              Y P++EP+L+M+L+TFRA+KLL+LKTKSRI +P+GR M+GCLDETRTL+YGQVF+  +
Sbjct: 309  CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368

Query: 738  VPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNE 797
                 ++  F V GK+V+AKNPCLHPGD+R+L AVDV  LHHM +CVVFPQ+G RPHPNE
Sbjct: 369  SGVNDND-RFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNE 428

Query: 798  CSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGI 857
            CSGSDLDGD+YF  WD  L   + V PM+Y PAPT  L+HDVTIEE++EYF NY+VN+ +
Sbjct: 429  CSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESL 488

Query: 858  GAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDK 917
            G IANAH VFADK   KA S  CI+LAKLFSIAVDFPKTGVPA +P  L V EYPDFM+K
Sbjct: 489  GMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEK 548

Query: 918  PNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDY 977
             +K TY S GV+GKL+R +K  +  +   + FTREVA + YD DM VDG+E Y+ EA   
Sbjct: 549  LDKVTYESKGVIGKLYREIKKHTPHI---KHFTREVARRSYDTDMIVDGYEDYITEAMAL 608

Query: 978  KTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFN 1037
            K +YDFKLGNLMD+YGIK+E E++SG +LKMAK+F K++D + I  A++SLRKE RS F+
Sbjct: 609  KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFS 668

Query: 1038 ENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRD 1097
            E          +   AKASAWY+VTYHP++WGCYNEG +R HF+SFPWC+ +KL++IK+ 
Sbjct: 669  EMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLLRIKQR 728

Query: 1098 KMTLKNSYPVSSLFHN 1113
            +  ++   P     HN
Sbjct: 729  RKFVRKMQPELFSLHN 737

[Close]
BLAST of CsaV3_5G028230 vs. Swiss-Prot
Match: sp|O82504|RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 731.5 bits (1887), Expect = 1.4e-209
Identity = 436/1139 (38.28%), Postives = 650/1139 (57.07%), Query Frame = 0 

Query: 4    TIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRIS------KPKD-EKARFTSVTVLFKS 63
            T++I      + ADE+  FLE H G+ TV  + I       KP+D  + +FT++ V  ++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   KLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMIS 123
            +L          + + KL F++  L+  E    ++    + V   +R++D+   +G   S
Sbjct: 71   QL---------LSSQSKLLFKTHNLRLSEAYDDII---PRPVDPRKRLDDIVLTVGFPES 130

Query: 124  NGKMRVI---WEGEK-WSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEP 183
            + K       W+G + W +      R++ F++    D YK+E+ FE+I+     C   + 
Sbjct: 131  DEKRFCALEKWDGVRCWIL---TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDA 190

Query: 184  SKF--FLIQLQGAPRIFRK------TPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSF 243
            S+   FL++L+  P++F++      T   S    +  +   F WIR  DF+ S  IG S 
Sbjct: 191  SEIDAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTST 250

Query: 244  TICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPP-QAFDISYKI 303
              CL++     +   F  L  Y+          G +  S + +VP++       +  Y+I
Sbjct: 251  CFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEI 310

Query: 304  LFKINALLQHGYLS-GPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKD 363
            LF++NAL+    +S     D E  +++      +  +   L+KL      CY P  ++K 
Sbjct: 311  LFQLNALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKT 370

Query: 364  QYLSYYTSNQLPWKSNIS--LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDID 423
            Q  S     +    S      +  ++   R  +TP K+Y  GPE   +N VV+ F   + 
Sbjct: 371  QMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVS 430

Query: 424  NFLRVSFVDEELDKL--HSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLA 483
            +F+RV+FV+E+  KL  +++ +  +        RT +Y+RV+S+L  GI +G K+FEFLA
Sbjct: 431  DFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLA 490

Query: 484  FSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEE 543
            FSASQLR NS WMFAS E + A DIREWMG F  IR+++K AAR+GQ F +SR+TL V  
Sbjct: 491  FSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRA 550

Query: 544  HEIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVV 603
             ++E IPD+EV      YCFSDGIGKIS   AK+VA+KCGL +H PSAFQIRY GYKGV+
Sbjct: 551  QDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVI 610

Query: 604  AIDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKK 663
            A+D +S +KLSLR+SMLK+ S +  L+V  W++  PCFLNR++I LLSTLGI D +F   
Sbjct: 611  AVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAM 670

Query: 664  QKEAIDQLDSILEDPSRALEVLELMSPGEMTSIL-KELLSFYMPNEEPFLNMMLRTFRAN 723
            Q   +  L ++LED   AL VL+ +S     ++L K LL  Y P+ EP+L+MMLR    +
Sbjct: 671  QAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHES 730

Query: 724  KLLDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVP------------RRSSEGN 783
            +L +LK++ RI VP+GR +IGC+DE   LEYGQV+V  ++             R+  E  
Sbjct: 731  QLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEET 790

Query: 784  FVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHH--MVDCVVFPQKGKRPHPNECSGSDLD 843
             VV GK+VV KNPCLHPGD+RVLDA+          +DC++FPQKG+RPHPNECSG DLD
Sbjct: 791  SVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLD 850

Query: 844  GDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAH 903
            GD +F  WD ++   +   PM+Y  +    ++HDVT+EEI ++F +YM++D +G I+ AH
Sbjct: 851  GDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAH 910

Query: 904  TVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYV 963
             V AD++ +KA S +C++LA L S AVDF KTG PA +P  L+  E+PDF+++  KPTY+
Sbjct: 911  LVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYI 970

Query: 964  SNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFK 1023
            S  V GKL+R VK   S +   +       T  YD  +E  GFE ++  A  ++  Y  K
Sbjct: 971  SESVFGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEK 1030

Query: 1024 LGNLMDYYGIKTEPELVSGNVLKMAKSFDKRND------LEQITFAMKSLRKEVRSWFNE 1083
            L +LM YYG   E E+++G +LK  + +  R++       ++IT ++K L KE   WF +
Sbjct: 1031 LTSLMIYYGAANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK 1090

Query: 1084 NESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRD 1097
                 + +D + +   ASAWYYVTY+P      N   ++  FLSFPW V D L+ IK +
Sbjct: 1091 -----SCEDEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAE 1116

[Close]
BLAST of CsaV3_5G028230 vs. Swiss-Prot
Match: sp|Q7XM31|RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 721.5 bits (1861), Expect = 1.5e-206
Identity = 409/1004 (40.74%), Postives = 598/1004 (59.56%), Query Frame = 0 

Query: 124  WEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQLQGA 183
            W+G +   E   G R++  YL ++   YK+E+ FE++      C L+      L+QL  A
Sbjct: 130  WDGVR--AEVIPGKRRVDLYLEHDSQRYKLEVLFEDMKDC-LGCTLDGMGA-ILLQLNYA 189

Query: 184  PRIFRKTPSSSSSPLYSN-------KSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHL 243
            PRI       + +  + +       +   F W+R +DFTP+   G+  T+ L+L  S  +
Sbjct: 190  PRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALV 249

Query: 244  PPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYL 303
                ++L  +        ++    + ++SN+VP++  P+ + + Y++LF++N+L+  G +
Sbjct: 250  SDILKSL-PFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKI 309

Query: 304  SGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWK 363
                ++ + F+ +       D      EK+  L+  CY P ++++ +  S   S+ +   
Sbjct: 310  VAKHVNADLFKAL--QELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNV-LL 369

Query: 364  SNISLDDG---LVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELD 423
            SN    +G   L+  +RV ITP K++  GPE  ++N VV+       +F+RV+FVDE+  
Sbjct: 370  SNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWS 429

Query: 424  KLHSIDLAPRSSSHENSQ--RTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWM 483
            KL S  ++ R      S+  +T +Y R++S+LK G  IG K FEFLAFSASQLR NS WM
Sbjct: 430  KLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWM 489

Query: 484  FASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVER 543
            FAS   L+A  IR WMG F +IR+V+K AAR+GQ F SSR+T  V   ++EVIPD+E+  
Sbjct: 490  FASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITT 549

Query: 544  KNIIYCFSDGIGKISKTLAKKVAEKCGL-INHTPSAFQIRYAGYKGVVAIDPTSKKKLSL 603
                Y FSDGIGKIS   AK+VA   GL   + PSAFQIRY GYKGV+AIDP S   LSL
Sbjct: 550  DGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSL 609

Query: 604  RNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSIL 663
            R SM K+ S    L++ SWSK QPC++NR++I+LLSTLGI D++FV  Q++ + + + +L
Sbjct: 610  RPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEML 669

Query: 664  EDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFV 723
             +   AL VL  +   E  + +K LL  Y P+ EP+L+M+L+  + N+L D++T+ +I V
Sbjct: 670  TNKEVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHV 729

Query: 724  PEGRTMIGCLDETRTLEYGQVFVHC---SVPRRSSEGNF---------VVKGKIVVAKNP 783
            P+GR +IGCLDET  LEYGQV++     S  ++ S  ++          V GK+ + KNP
Sbjct: 730  PKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNP 789

Query: 784  CLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCI 843
            CLHPGD+RVL+A+    L  MVDC+VFPQ+G+RPHPNECSG DLDGDLYF  WD +L   
Sbjct: 790  CLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPE 849

Query: 844  KQVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVE 903
            K   PM+Y       ++H VT+EEIQ++F +YM+ND +GAI+ AH + AD++  KA S E
Sbjct: 850  KVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPE 909

Query: 904  CIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFR---GV 963
            C++LA L S+AVDF KTG PA +PR LR  EYPDFM++  KP Y+SNGVLGKL+R   G 
Sbjct: 910  CLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGH 969

Query: 964  KDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKT 1023
             + S D       + +  +  YDPD+EV G +++L+ A +Y   Y+ KL  LM+YY  + 
Sbjct: 970  MEKSGDSGALSSSSAQ-PSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAEL 1029

Query: 1024 EPELVSGNV---LKMAKSFDKR--NDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDE 1083
            E E+++GN+   +   K  +KR     ++I  A+ +L +E R W   +  +      ED 
Sbjct: 1030 EDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRKE------EDA 1089

Query: 1084 YAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIK 1095
               ASAWY VTYHPD         +   F SFPW   D L+ IK
Sbjct: 1090 SRMASAWYRVTYHPD-------RRRGKRFWSFPWIACDNLLAIK 1111

[Close]
BLAST of CsaV3_5G028230 vs. Swiss-Prot
Match: sp|Q9SG02|RDR6_ARATH (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)

HSP 1 Score: 574.7 bits (1480), Expect = 2.2e-162
Identity = 371/1017 (36.48%), Postives = 552/1017 (54.28%), Query Frame = 0 

Query: 150  EYKMELCFENILSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSF--- 209
            +YK+EL   +I +V     L+      ++QL  +PR++ +T   +   +Y          
Sbjct: 192  DYKLELLVRDIQTVRQYKTLH--GFVLILQLASSPRVWYRT---ADDDIYDTVPGDLLDD 251

Query: 210  --RWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGY---------KVTYAPFIL 269
               WIR  DFT    IG+  +  + +SP +      +T + Y         +V + P I 
Sbjct: 252  DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENK--LRTALDYFRMRRVQEERVRWPPRIR 311

Query: 270  HKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFH 329
            ++       S+    I   +   IS++I+F +N++L  G  +   L + FF L+ +    
Sbjct: 312  NEPCFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQ--P 371

Query: 330  SDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITP 389
             D    +L+ L   K   +   K LK   +  +         +    + +  + R+ ITP
Sbjct: 372  KDVNIASLKHLCTYKRPVFDAYKRLK--LVQEWIQKNPKLLGSHEQSEDISEIRRLVITP 431

Query: 390  LKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS-------IDLAPRSSSHE 449
             + Y   PE  LSNRV+RR+    + FLRV+F+DE +  ++S         +    +S  
Sbjct: 432  TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 491

Query: 450  NSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMG 509
             SQ+T V+ RV S+L +G  +  +K+ FLAFSA+QLR+ S W FA       +DI+ WMG
Sbjct: 492  FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 551

Query: 510  DFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEV-IPDVEVERKNIIYCFSDGIGKISK 569
             F   +NVAK AAR+G  F S+  T+ V  HE++  +PD+E       Y FSDGIG I+ 
Sbjct: 552  KFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITP 611

Query: 570  TLAKKVAEKCGL-INHTPSAFQIRYAGYKGVVAIDPTSKK--KLSLRNSMLKYMSLDTQL 629
             LA +V EK  L ++++P A+QIRYAG+KGVVA  P+     +L+LR+SM K+ S  T L
Sbjct: 612  DLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTIL 671

Query: 630  DVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMS 689
            ++ SW+++QP FLNRQ+I LLS LG+ D++F   Q+  + +L+ IL+D   A EVL    
Sbjct: 672  EICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASC 731

Query: 690  PGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCLDETR 749
              +  +    L + + P  EP L  ML + R  +L  L+ KSRIFV  GR ++GCLDE  
Sbjct: 732  AEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAG 791

Query: 750  TLEYGQVFVHCSVP-------------RRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAV 809
             LE+GQ F+  S P             + +     VVKG + +AKNPCLHPGDVR+L+AV
Sbjct: 792  ILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAV 851

Query: 810  DVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLEL--TCIKQVKPMNYEPA 869
            DV  LHHM DC++FPQKG RPH NE SGSDLDGDLYF  WD +L     K    M+Y+ A
Sbjct: 852  DVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAA 911

Query: 870  PTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIA 929
                L   V  ++I ++FA  + N+ +G I NAH V AD++   AM  EC+ LA+L + A
Sbjct: 912  EEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATA 971

Query: 930  VDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDV-SSDVNTFEIF 989
            VDFPKTG   ++P +L+   YPDFM K +  TY SN +LG+L+R VK+V   D       
Sbjct: 972  VDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEE 1031

Query: 990  TREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMA 1049
            + + +   YD  +E+ GFE  + EA+ +K  YD +L  L+  Y ++ E E+V+G++  M 
Sbjct: 1032 STDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMP 1091

Query: 1050 KSFDKRND--LEQITFAMKSLRKEVRSWFNENESKFTYDDIEDE------YAKASAWYYV 1109
            K   K+     E++  +  SL+KE R  F E      ++++ +E        KASAWY+V
Sbjct: 1092 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIP--DHENLSEEEKNILYEKKASAWYHV 1151

[Close]
BLAST of CsaV3_5G028230 vs. TrEMBL
Match: tr|A0A1D8RK46|A0A1D8RK46_CUCSA (RNA-dependent RNA polymerase (Fragment) OS=Cucumis sativus OX=3659 GN=RDR1c2 PE=2 SV=1)

HSP 1 Score: 2273.8 bits (5891), Expect = 0.0e+00
Identity = 1114/1115 (99.91%), Postives = 1115/1115 (100.00%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQL+ENSFWMFASREGLSA
Sbjct: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLKENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
            TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
            SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG
Sbjct: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115

[Close]
BLAST of CsaV3_5G028230 vs. TrEMBL
Match: tr|A0A0A0KRH3|A0A0A0KRH3_CUCSA (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=1)

HSP 1 Score: 2271.5 bits (5885), Expect = 0.0e+00
Identity = 1113/1115 (99.82%), Postives = 1114/1115 (99.91%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVA ETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNI+YCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
            TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
            SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG
Sbjct: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115

[Close]
BLAST of CsaV3_5G028230 vs. TrEMBL
Match: tr|A0A0S1YCZ4|A0A0S1YCZ4_CUCSA (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1)

HSP 1 Score: 2177.1 bits (5640), Expect = 0.0e+00
Identity = 1060/1111 (95.41%), Postives = 1090/1111 (98.11%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYI+HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSS ENSQRTRVYDRV+S+LKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421  APRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNI+YCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGL +HTPSAFQIRYAGYKGVVAIDPTS+KKLSLR SMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVL WSKYQPCFLNRQVINLLSTLGI DDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPN+EPFLNMMLRTFRA+KLLDL+TKSRIFVP+GRTM+GCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DET+TLEYGQVFVHCS+P RSSEGNFVVKGK+VVAKNPCLHPGDVR+LDA+DVKALHHMV
Sbjct: 721  DETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIKQVKPM+Y+PAPTIQL+HDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EE+QEYFANYMVNDG+GAIANAHTVFADKNSKKAMS ECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNK TYVSNGVLGKLFRGVKDVSSDV+ FEIFTREVATK YDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGN+LKMAKSFDKR DLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
             FAMKSLRKEVR WFNENESK TYDDI+DEYA+ASAWY VTYHPDYWGCYNEG +RDHFL
Sbjct: 1021 AFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASAWYCVTYHPDYWGCYNEGTKRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFH 1112
            SFPWCVADKLIQIKR+KM+++NS P SSL H
Sbjct: 1081 SFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111

[Close]
BLAST of CsaV3_5G028230 vs. TrEMBL
Match: tr|E5GB63|E5GB63_CUCME (RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 2077.4 bits (5381), Expect = 0.0e+00
Identity = 1023/1137 (89.97%), Postives = 1064/1137 (93.58%), Query Frame = 0 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            M KTIEIYGF P+VT DEVKEFLENHTGDGTVSTVRISKPKD+K RFTSVTV FKSKLAA
Sbjct: 1    MEKTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAK+TTEE+KLWFESSYLKARE+EK      T G  EMERMEDVKG LGSMIS  KM
Sbjct: 61   EYIVAKATTEEKKLWFESSYLKAREVEK----KATSGGPEMERMEDVKGQLGSMISKDKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKW+VEFGNG RKLWFYLSYEVD+YKMELCFENILSVEFRCPLN+PSKFFLIQ+
Sbjct: 121  RVIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLIQV 180

Query: 181  QG---------------------APRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSC 240
                                   APRIFRKTPSSSSSPLYSN+S SFRWIRDVDFTPSSC
Sbjct: 181  SSFFLXXXXXXXXXXXXXXLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSC 240

Query: 241  IGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDI 300
            IGQSFT+CLQ SPSHHLPPFFQTLVGYKVTY PFIL KGSS VSNSNLVPIITPPQAFDI
Sbjct: 241  IGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDI 300

Query: 301  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKW 360
            SYKILFKINALLQ GYLSGPTLDDEFFRLVDSSRFH DYI+HALEKLFNLKECCYKPQKW
Sbjct: 301  SYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKW 360

Query: 361  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 420
            LKDQYLSYY SNQLPWK N+SLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFI DI
Sbjct: 361  LKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDI 420

Query: 421  DNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAF 480
            DNFLRVSFVDEELDKLHSIDLAPRSSS EN+ RTRVYDRVVSVLKNGIVIG+KKFEFLAF
Sbjct: 421  DNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAF 480

Query: 481  SASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 540
            SASQLRENSFWMFASR+GLSAADIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCV+EH
Sbjct: 481  SASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEH 540

Query: 541  EIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVA 600
            EIEVIPDVEVERKNI+YCFSDGIGKISKTLAKKVA+KCGL  HTPSAFQIRYAGYKGVVA
Sbjct: 541  EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVA 600

Query: 601  IDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 660
            IDPTS+KKLSLR SMLKYMSLDTQLDVL WSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ
Sbjct: 601  IDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 660

Query: 661  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKL 720
            KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMML TFRANKL
Sbjct: 661  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKL 720

Query: 721  LDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPC 780
            LDLKTKSRIFVP GRTM+GCLDETRTLEYGQVFVHCSVP RSSEGNFVVKGK+VVAKNPC
Sbjct: 721  LDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPC 780

Query: 781  LHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIK 840
            LHPGDVR+LDA+DVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIK
Sbjct: 781  LHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIK 840

Query: 841  QVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVEC 900
            QVKPM+YEPAP+IQL+HDVTIEE+Q+YFANYMVNDG+GAIANAHTVFADKNSKKAMS EC
Sbjct: 841  QVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAEC 900

Query: 901  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 960
            IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKP+KPTYVSNGVLGKLFRGVKDVS
Sbjct: 901  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVS 960

Query: 961  SDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1020
            SDVNTFEIFT+EVATK YDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL
Sbjct: 961  SDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1020

Query: 1021 VSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIE-DEYAKASAWY 1080
            VSGN+LKMAKSFDKRNDLEQI FAMKSLRKEVRSWFNENESK+TY+DIE DEYA+ASAWY
Sbjct: 1021 VSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTYEDIEDDEYARASAWY 1080

Query: 1081 YVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
             VTYHPDYWG YNEG QRDHFLSFPWCVADKLIQIKR+KM+L+NS P+SSL +NFDG
Sbjct: 1081 CVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQYNFDG 1133

[Close]
BLAST of CsaV3_5G028230 vs. TrEMBL
Match: tr|A0A1S3AV70|A0A1S3AV70_CUCME (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103483034 PE=3 SV=1)

HSP 1 Score: 1792.3 bits (4641), Expect = 0.0e+00
Identity = 871/935 (93.16%), Postives = 903/935 (96.58%), Query Frame = 0 

Query: 182  GAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQ 241
            GAPRIFRKTPSSSSSPLYSN+S SFRWIRDVDFTPSSCIGQSFT+CLQ SPSHHLPPFFQ
Sbjct: 1    GAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQ 60

Query: 242  TLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTL 301
            TLVGYKVTY PFIL KGSS VSNSNLVPIITPPQAFDISYKILFKINALLQ GYLSGPTL
Sbjct: 61   TLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTL 120

Query: 302  DDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISL 361
            DDEFFRLVDSSRFH DYI+HALEKLFNLKECCYKPQKWLKDQYLSYY SNQLPWK N+SL
Sbjct: 121  DDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSL 180

Query: 362  DDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLA 421
            DDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFI DIDNFLRVSFVDEELDKLHSIDLA
Sbjct: 181  DDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLA 240

Query: 422  PRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAA 481
            PRSSS EN+ RTRVYDRVVSVLKNGIVIG+KKFEFLAFSASQLRENSFWMFASR+GLSAA
Sbjct: 241  PRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAA 300

Query: 482  DIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSDG 541
            DIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCV+EHEIEVIPDVEVERKNI+YCFSDG
Sbjct: 301  DIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDG 360

Query: 542  IGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSLD 601
            IGKISKTLAKKVA+KCGL  HTPSAFQIRYAGYKGVVAIDPTS+KKLSLR SMLKYMSLD
Sbjct: 361  IGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLD 420

Query: 602  TQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLE 661
            TQLDVL WSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLE
Sbjct: 421  TQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLE 480

Query: 662  LMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCLD 721
            LMSPGEMTSILKELLSFYMPNEEPFLNMML TFRANKLLDLKTKSRIFVP GRTM+GCLD
Sbjct: 481  LMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLD 540

Query: 722  ETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMVD 781
            ETRTLEYGQVFVHCSVP RSSEGNFVVKGK+VVAKNPCLHPGDVR+LDA+DVKALHHMVD
Sbjct: 541  ETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVD 600

Query: 782  CVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTIE 841
            CVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIKQVKPM+YEPAP+IQL+HDVTIE
Sbjct: 601  CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIE 660

Query: 842  EIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANL 901
            E+Q+YFANYMVNDG+GAIANAHTVFADKNSKKAMS ECIKLAKLFSIAVDFPKTGVPANL
Sbjct: 661  EVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANL 720

Query: 902  PRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDM 961
            PRNLRVHEYPDFMDKP+KPTYVSNGVLGKLFRGVKDVSSDVNTFEIFT+EVATK YDPDM
Sbjct: 721  PRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDM 780

Query: 962  EVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQIT 1021
            EVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGN+LKMAKSFDKRNDLEQI 
Sbjct: 781  EVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIA 840

Query: 1022 FAMKSLRKEVRSWFNENESKFTYDDIE-DEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1081
            FAMKSLRKEVRSWFNENESK+TY+DIE DEYA+ASAWY VTYHPDYWG YNEG QRDHFL
Sbjct: 841  FAMKSLRKEVRSWFNENESKYTYEDIEDDEYARASAWYCVTYHPDYWGRYNEGTQRDHFL 900

Query: 1082 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
            SFPWCVADKLIQIKR+KM+L+NS P+SSL +NFDG
Sbjct: 901  SFPWCVADKLIQIKREKMSLRNSSPMSSLQYNFDG 935

The following BLAST results are available for this feature:
BLAST of CsaV3_5G028230 vs. NCBI nr
Match NameE-valueIdentityDescription
AOW73471.10.0e+0099.91RNA-dependent RNA polymerase 1c2, partial [Cucumis sativus][more]
KGN51474.10.0e+0099.82hypothetical protein Csa_5G564290 [Cucumis sativus][more]
XP_011655453.10.0e+0099.82PREDICTED: probable RNA-dependent RNA polymerase 1 [Cucumis sativus][more]
ALM88235.10.0e+0095.41RNA-dependent RNA polymerase 1c [Cucumis sativus][more]
ADN33705.10.0e+0089.97RNA-dependent RNA polymerase [Cucumis melo subsp. melo][more]
BLAST of CsaV3_5G028230 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14790.10.0e+0056.60RNA-dependent RNA polymerase 1[more]
AT4G11130.17.9e-21138.28RNA-dependent RNA polymerase 2[more]
AT3G49500.11.2e-16336.48RNA-dependent RNA polymerase 6[more]
AT2G19930.17.3e-3125.04RNA-dependent RNA polymerase family protein[more]
AT2G19920.14.9e-2723.73RNA-dependent RNA polymerase family protein[more]
BLAST of CsaV3_5G028230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LQV2|RDR1_ARATH0.0e+0056.60RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1[more]
sp|Q0DXS3|RDR1_ORYSJ3.8e-26360.46Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947... [more]
sp|O82504|RDR2_ARATH1.4e-20938.28RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1[more]
sp|Q7XM31|RDR2_ORYSJ1.5e-20640.74Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947... [more]
sp|Q9SG02|RDR6_ARATH2.2e-16236.48RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1[more]
BLAST of CsaV3_5G028230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1D8RK46|A0A1D8RK46_CUCSA0.0e+0099.91RNA-dependent RNA polymerase (Fragment) OS=Cucumis sativus OX=3659 GN=RDR1c2 PE=... [more]
tr|A0A0A0KRH3|A0A0A0KRH3_CUCSA0.0e+0099.82RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=... [more]
tr|A0A0S1YCZ4|A0A0S1YCZ4_CUCSA0.0e+0095.41RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1[more]
tr|E5GB63|E5GB63_CUCME0.0e+0089.97RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
tr|A0A1S3AV70|A0A1S3AV70_CUCME0.0e+0093.16RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103483034 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003968RNA-directed RNA polymerase activity
Vocabulary: INTERPRO
TermDefinition
IPR007855RNA-dep_RNA_pol_euk-typ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0000165 MAPK cascade
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0006952 defense response
biological_process GO:0010025 wax biosynthetic process
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0009615 response to virus
biological_process GO:0009617 response to bacterium
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0060148 positive regulation of posttranscriptional gene silencing
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0048519 negative regulation of biological process
biological_process GO:0071229 cellular response to acid chemical
biological_process GO:0071310 cellular response to organic substance
biological_process GO:1901701 cellular response to oxygen-containing compound
biological_process GO:0045087 innate immune response
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0031347 regulation of defense response
biological_process GO:0010468 regulation of gene expression
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0051707 response to other organism
biological_process GO:0007165 signal transduction
biological_process GO:0001172 transcription, RNA-templated
biological_process GO:0006464 cellular protein modification process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031379 RNA-directed RNA polymerase complex
molecular_function GO:0003968 RNA-directed RNA polymerase activity
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G028230.1CsaV3_5G028230.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePFAMPF05183RdRPcoord: 373..935
e-value: 1.2E-182
score: 608.5
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePANTHERPTHR23079RNA-DEPENDENT RNA POLYMERASEcoord: 68..1101
NoneNo IPR availablePANTHERPTHR23079:SF1RNA-DEPENDENT RNA POLYMERASE FAMILYcoord: 68..1101

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G028230CSPI05G19310Wild cucumber (PI 183967)cpicucB284
CsaV3_5G028230Cucsa.280130Cucumber (Gy14) v1cgycucB428
CsaV3_5G028230CmoCh04G022260Cucurbita moschata (Rifu)cmocucB0878
CsaV3_5G028230CsGy5G018850Cucumber (Gy14) v2cgybcucB232
CsaV3_5G028230Cla003946Watermelon (97103) v1cucwmB441
CsaV3_5G028230Cla003960Watermelon (97103) v1cucwmB438
CsaV3_5G028230MELO3C005284Melon (DHL92) v3.5.1cucmeB350
CsaV3_5G028230MELO3C005257Melon (DHL92) v3.5.1cucmeB363
CsaV3_5G028230ClCG01G006600Watermelon (Charleston Gray)cucwcgB389
CsaV3_5G028230ClCG01G006450Watermelon (Charleston Gray)cucwcgB394
CsaV3_5G028230Lsi09G006940Bottle gourd (USVL1VR-Ls)cuclsiB350
CsaV3_5G028230MELO3C005257.2Melon (DHL92) v3.6.1cucmedB356
CsaV3_5G028230MELO3C005284.2Melon (DHL92) v3.6.1cucmedB342
CsaV3_5G028230Cla97C01G006910Watermelon (97103) v2cucwmbB355
CsaV3_5G028230Cla97C01G006770Watermelon (97103) v2cucwmbB359
CsaV3_5G028230Bhi12G000832Wax gourdcucwgoB453
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G028230Silver-seed gourdcarcucB0460
CsaV3_5G028230Silver-seed gourdcarcucB0461
CsaV3_5G028230Cucurbita maxima (Rimu)cmacucB0355
CsaV3_5G028230Cucurbita maxima (Rimu)cmacucB0869
CsaV3_5G028230Cucurbita maxima (Rimu)cmacucB0888
CsaV3_5G028230Cucurbita moschata (Rifu)cmocucB0350
CsaV3_5G028230Cucurbita moschata (Rifu)cmocucB0855
CsaV3_5G028230Cucurbita pepo (Zucchini)cpecucB0212
CsaV3_5G028230Cucurbita pepo (Zucchini)cpecucB0526
CsaV3_5G028230Cucurbita pepo (Zucchini)cpecucB0547
CsaV3_5G028230Wild cucumber (PI 183967)cpicucB294
CsaV3_5G028230Bottle gourd (USVL1VR-Ls)cuclsiB352
CsaV3_5G028230Melon (DHL92) v3.5.1cucmeB355
CsaV3_5G028230Melon (DHL92) v3.6.1cucmedB347
CsaV3_5G028230Wax gourdcucwgoB461