BLAST of CmoCh04G022260 vs. Swiss-Prot
Match:
RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)
HSP 1 Score: 1144.8 bits (2960), Expect = 0.0e+00
Identity = 622/1140 (54.56%), Postives = 784/1140 (68.77%), Query Frame = 1
Query: 5 GKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAE 64
GKTI+VFGF VSA EVK+F+E TG GTV +++ +PK R+ A V+F S+
Sbjct: 2 GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVY-AIVQFTSERHTR 61
Query: 65 YVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRVIW 124
++ A ERL++GR YLKA VE++ + R L + +++ G + + +W
Sbjct: 62 LII--TAAAERLYYGRSYLKAFEVEQDIVPKPRAS-LHTISGLKMFFGCQVSTKKFLTLW 121
Query: 125 RGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQG 184
+D V +G GMRKL F S+ DY++EL +ENI + L P SS +IQ+ G
Sbjct: 122 SAQDVCVSFGIGMRKLHFSFSW--YQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIG 181
Query: 185 APRIFKK--CPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLP 244
AP+IF+K P + FYS + + +WIR DFT SSCIGQS A C E+ +P
Sbjct: 182 APKIFEKEDQPINLLFGIMDFYS-DGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP 241
Query: 245 SFFQTLVGYKEIYGP-FKLSTGSAFSSTSN-LVPIVTPPQPFHIPYKILFKINALVQHGY 304
F + Y E F + +GS++SS +N LVP+V PP F +P++ILFK+N LVQ+
Sbjct: 242 DFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNAC 301
Query: 305 LPGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPW 364
L G ALD F+RL++ ++ I++ LEKLF L ECCYEP WL+ +Y + S +LP
Sbjct: 302 LSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPL 361
Query: 365 KANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKI 424
ISLDD LVY++RVQ+TPA+VYF GPE N+SNRV+R + I+NFLRVSFVDE+L+K+
Sbjct: 362 SPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKV 421
Query: 425 YSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 484
S DLSPR+ST++ RT++YDRI SVLR+GIVIG KKFEFLAFS+SQLRENS WMFA +
Sbjct: 422 RSMDLSPRSSTQR--RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 481
Query: 485 GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKY 544
+ AA IR WMGDF IRNVAKYAARLGQSF SSR+TL V +EIEVIPDVE+ +Y
Sbjct: 482 RITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRY 541
Query: 545 CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 604
FSDGIGKIS A VA KCGL +PSAFQIRY GYKGVVAVDP S KKLSLRKSM K
Sbjct: 542 VFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSK 601
Query: 605 YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKA 664
+ S +T+LDVL+WSKYQPC++NRQ+I LLSTLG+ D VF K+Q++ VD+LD+IL P +A
Sbjct: 602 FESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEA 661
Query: 665 LEVLELMSPGEMTSVLKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRT 724
E L LM+PGE T++LK ++L Y P EPFL+MML+ FRA KLL+LRTK+RIF+ GR+
Sbjct: 662 HEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRS 721
Query: 725 MMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKT 784
MMGCLDETRTLEYGQV + S P R F++ G VVVAKNPCLHPGDVRVL AV+V
Sbjct: 722 MMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNVPA 781
Query: 785 LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLD 844
L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL R +PM Y P PT LD
Sbjct: 782 LNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILD 841
Query: 845 HDVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIAN 904
HDVTIE +E F ++I+ + IA+ F E
Sbjct: 842 HDVTIEE-VEEYF-----ANYIVNDSLGIIANAHTAFADKE------------------- 901
Query: 905 AHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRT 964
P KA S CIELAK FS AVDFPKTGV A +P+ L V EYPDFMEKP+K T
Sbjct: 902 ---------PLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPT 961
Query: 965 YTSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYD 1024
Y S VIGKLFR VK+ + + +I++FT +VA+K YD DMEV GFE Y+ EAF K+ YD
Sbjct: 962 YESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYD 1021
Query: 1025 FKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSK 1084
FKLGNLMDYYGI+TE E++SG I+RM KSF KR D E I A+R+LRKE +
Sbjct: 1022 FKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKE---------TL 1081
Query: 1085 SIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKM 1140
S++N +++E++E AKASAWYHVTYH ++WG YNEG+ RDHFLSF WCV +KL++IK+ +
Sbjct: 1082 SLFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNL 1088
BLAST of CmoCh04G022260 vs. Swiss-Prot
Match:
RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)
HSP 1 Score: 837.4 bits (2162), Expect = 1.9e-241
Identity = 441/761 (57.95%), Postives = 549/761 (72.14%), Query Frame = 1
Query: 383 VYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIYSSDLSPRTST-EKIERTRVYD 442
VYF GPE N+SNRVVR F DI+NFLR+SFVDE+ +K+ ++DLSPR+++ RT +Y
Sbjct: 9 VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68
Query: 443 RILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIREWMGDFREIRNVA 502
R+LSVL +GI IGGK FEFLAFS+SQLR+NS WMFASR+GL A+DIR WMGDFR IRNVA
Sbjct: 69 RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128
Query: 503 KYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFSDGIGKISEALAEMVAEKC 562
KYAARLGQSF SS +TL V++ E+E I D+ + ++ FSDGIGKIS A A VA KC
Sbjct: 129 KYAARLGQSFSSSTETLKVQKYEVEEISDI---KNGTQHVFSDGIGKISSAFANEVAMKC 188
Query: 563 GLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFL 622
L PSAFQIRY GYKGVVAVDPTS+ KLSLRKSMLK+ S + +DVL++SKYQP FL
Sbjct: 189 NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248
Query: 623 NRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSVLKDMLL 682
NRQ+I LLSTLG++D VF ++Q++AV+QL+ ++ DP A+E +ELM GE+T+ +K++LL
Sbjct: 249 NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308
Query: 683 F-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTMMGCLDETRTLEYGQVFIHCS 742
Y P +EP+L+M+L+TFRA KLL+L+TKSRI +P+GR MMGCLDETRTL+YGQVFI +
Sbjct: 309 CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR-A 368
Query: 743 VPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNE 802
G + F V GKVV+AKNPCLHPGD+R+L AVDV LHHM +CVVFPQ+G RPHPNE
Sbjct: 369 TSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNE 428
Query: 803 CSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEVCFQELFTSSANTHF 862
CSGSDLDGD+YFV WDP L R + PM Y PAPT LDHDVTIE +E FT+
Sbjct: 429 CSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEE-VEEYFTN------ 488
Query: 863 IIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANAHTVFA---DKKPKKAMSAEC 922
YI + E AN AH VFA D K + + E
Sbjct: 489 -------YIVN--------ESLGMIAN------------AHVVFADKEDLKAESSPCIEL 548
Query: 923 IELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVS 982
+L + VDFPKTGVPA +P L V EYPDFMEK +K TY S GVIGKL+R +K
Sbjct: 549 AKLFSIA---VDFPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIK--- 608
Query: 983 SDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPEL 1042
+I+ FTREVA + YD DM V G+E+Y++EA K YDFKLGNLMD+YGI++E E+
Sbjct: 609 KHTPHIKHFTREVARRSYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEI 668
Query: 1043 VSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASA 1102
+SG IL+M K+F K++D + I LA+RSLRKEAR F+E S+ +N D AKASA
Sbjct: 669 ISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFSE---MSLDDNGHGHDASEAKASA 722
Query: 1103 WYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREK 1139
WYHVTYHP FWG YNEG +R HF+SFPWC+ EKL++IK+ +
Sbjct: 729 WYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLLRIKQRR 722
BLAST of CmoCh04G022260 vs. Swiss-Prot
Match:
RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)
HSP 1 Score: 713.0 bits (1839), Expect = 5.3e-204
Identity = 453/1182 (38.32%), Postives = 649/1182 (54.91%), Query Frame = 1
Query: 3 TKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVA 62
T T+++ + + A E+ F+E H GE TV + I + ARV+F + +
Sbjct: 7 TNRSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTT-LE 66
Query: 63 AEYVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRV 122
+ + ++ +L F L+ + V+ +RL+ + + +G DE R
Sbjct: 67 VKSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRP-VDPRKRLDDIVLTVGFPE-SDEKRF 126
Query: 123 I----WRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNL- 182
W G + + W + S D YK+E+RFE+I+ C + +S +
Sbjct: 127 CALEKWDGVRCWILTEKRRVEFWVWES----GDCYKIEVRFEDIIETLSCCVNGDASEID 186
Query: 183 -FLIQLQGAPRIFKKCP---SSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCF 242
FL++L+ P++FK+ ++ S + KE F WIR DF+ S IG S C
Sbjct: 187 AFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCL 246
Query: 243 EVSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPP-QPFHIPYKILFKI 302
EV G + F L Y+E G F+S + +VP++ PY+ILF++
Sbjct: 247 EVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQL 306
Query: 303 NALVQHGYLPGSALDDKFFRLVDPTRFRS-DYIEYALEKLFSLKECCYEPQKWLKQQYLS 362
NALV + A D L+ R S + L+KL CY+P ++K Q S
Sbjct: 307 NALVHAQKISLFAASD--MELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQS 366
Query: 363 FCSSMQ-LPWKANISL-DDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLR 422
M+ P A L + +++ R +TP+K+Y GPE +N VV+ F + + +F+R
Sbjct: 367 VVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMR 426
Query: 423 VSFVDEELDKIYSSDLSPRTSTE---KIERTRVYDRILSVLRNGIVIGGKKFEFLAFSAS 482
V+FV+E+ K+ ++ LS + K RT +Y+R+LS+L GI +G K+FEFLAFSAS
Sbjct: 427 VTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSAS 486
Query: 483 QLRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIE 542
QLR NS WMFAS E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V ++E
Sbjct: 487 QLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVE 546
Query: 543 VIPDVEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDP 602
IPD+EV YCFSDGIGKIS A A+ VA+KCGL SH PSAFQIRY GYKGV+AVD
Sbjct: 547 QIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDR 606
Query: 603 TSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKA 662
+S +KLSLR SMLK+ S + L+V W++ PCFLNR++I LLSTLGI+D +F Q
Sbjct: 607 SSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVH 666
Query: 663 VDQLDSILRDPSKALEVLELMSPGEMTSVLKDMLL-FYNPHEEPFLNMMLRTFRADKLLD 722
+ L ++L D AL VL+ +S ++L MLL Y P EP+L+MMLR +L +
Sbjct: 667 LSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSE 726
Query: 723 LRTKSRIFVPEGRTMMGCLDETRTLEYGQVFIHCSVP------------GRSSESNFVVK 782
L+++ RI VP+GR ++GC+DE LEYGQV++ ++ + E VV
Sbjct: 727 LKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVI 786
Query: 783 GKVVVAKNPCLHPGDVRVLDAVDVKTLHH--MVDCVVFPQKGKRPHPNECSGSDLDGDLY 842
GKVVV KNPCLHPGD+RVLDA+ +DC++FPQKG+RPHPNECSG DLDGD +
Sbjct: 787 GKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQF 846
Query: 843 FVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEVCFQELFTSSANTHFIIFFLIIYIAD 902
FV WD ++ PM Y + +DHDVT+E
Sbjct: 847 FVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEE------------------------- 906
Query: 903 LIHRFEQIEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFP 962
IH+F +Y + D LG I+ AH V AD+ P+KA S +C+ELA L S AVDF
Sbjct: 907 -IHKF----FVDYMIS----DTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFA 966
Query: 963 KTGVPANLPRSLRVHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVA 1022
KTG PA +P +L+ E+PDF+E+ K TY S V GKL+R VK S + +
Sbjct: 967 KTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVK---SSLAQRKPEAESED 1026
Query: 1023 AKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDK 1082
YD +E GFE+++ A ++ MY KL +LM YYG E E+++G IL+ + +
Sbjct: 1027 TVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEILTG-ILKTKEMYLA 1086
Query: 1083 RND------MEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHP 1142
R++ ++I+L+++ L KEA GWF + + +DE + ASAWY+VTY+P
Sbjct: 1087 RDNRRYGDMKDRITLSVKDLHKEAMGWFEK--------SCEDEQQKKKLASAWYYVTYNP 1123
Query: 1143 NFWGRYNEGMQRDH---FLSFPWCVSEKLIQIKREKMESSPV 1145
N RD FLSFPW V + L+ IK E + V
Sbjct: 1147 N---------HRDEKLTFLSFPWIVGDVLLDIKAENAQRQSV 1123
BLAST of CmoCh04G022260 vs. Swiss-Prot
Match:
RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)
HSP 1 Score: 698.7 bits (1802), Expect = 1.0e-199
Identity = 410/1034 (39.65%), Postives = 594/1034 (57.45%), Query Frame = 1
Query: 136 GMRKLWFYLSYGVEDDDYKMELRFENI---LGVQLRCPHNSSSNLFLIQLQGAPRIFKKC 195
G R++ YL + + YK+E+ FE++ LG L L+QL APRI
Sbjct: 140 GKRRVDLYLEH--DSQRYKLEVLFEDMKDCLGCTL-----DGMGAILLQLNYAPRIHTAI 199
Query: 196 PSSSSSS---SSQFYS-KESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPSFFQTL 255
+ +S +F++ KE F W+R +DFTP+ G+ L ++ + ++L
Sbjct: 200 SGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSL 259
Query: 256 VGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYLPGSALDD 315
+ G +++ ++SN+VP+V P+ + +PY++LF++N+L+ G + ++
Sbjct: 260 P-FSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNA 319
Query: 316 KFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSS--MQLPWKANISL 375
F+ + D EK+ L+ CY P ++++Q+ S S + L +
Sbjct: 320 DLFKALQ--ELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGEGEG 379
Query: 376 DDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIYSSDLS 435
+ L+ +RV ITP+K++ GPE ++N VV+ +F+RV+FVDE+ K+ S+ +S
Sbjct: 380 ERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAIS 439
Query: 436 PRTST---EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLN 495
R K +T +Y RILS+L+ G IG K FEFLAFSASQLR NS WMFAS LN
Sbjct: 440 ARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLN 499
Query: 496 AADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFS 555
A IR WMG F IR+V+K AAR+GQ F SSR+T V ++EVIPD+E+ KY FS
Sbjct: 500 AGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFS 559
Query: 556 DGIGKISEALAEMVAEKCGLI-SHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYM 615
DGIGKIS A+ VA GL ++ PSAFQIRY GYKGV+A+DP S LSLR SM K+
Sbjct: 560 DGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFE 619
Query: 616 SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKALE 675
S L++ SWSK QPC++NR++I+LLSTLGI+D++FV Q+ + + + +L + AL
Sbjct: 620 SESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALS 679
Query: 676 VLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTMMG 735
VL + E + +K +L Y P EP+L+M+L+ + ++L D+RT+ +I VP+GR ++G
Sbjct: 680 VLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIG 739
Query: 736 CLDETRTLEYGQVFIHCSVPGR----SSESNF--------VVKGKVVVAKNPCLHPGDVR 795
CLDET LEYGQV+I + + S++S F V GKV + KNPCLHPGD+R
Sbjct: 740 CLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIR 799
Query: 796 VLDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSY 855
VL+A+ L MVDC+VFPQ+G+RPHPNECSG DLDGDLYF+ WD +L + PM Y
Sbjct: 800 VLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDY 859
Query: 856 EPAPTIQLDHDVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMV 915
+DH VT+E HF+ + +
Sbjct: 860 TATRPRIMDHVVTLE---------EIQKHFVDYM-------------------------I 919
Query: 916 NDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPD 975
ND LG I+ AH + AD+ P KA S EC++LA L S+AVDF KTG PA +PR+LR EYPD
Sbjct: 920 NDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPD 979
Query: 976 FMEKPNKRTYTSNGVIGKLFR---GVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENY 1035
FME+ K Y SNGV+GKL+R G + S D + + + + + YDPD+EV G + +
Sbjct: 980 FMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQ-PSPTYDPDLEVPGSDEF 1039
Query: 1036 LSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND------MEQISLA 1095
L A +Y +Y+ KL LM+YY E E E+++GNI R + KR++ ++I A
Sbjct: 1040 LQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNI-RNKMLYLKRDNKRYFEMKDRIVAA 1099
Query: 1096 MRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFL 1136
+ +L +EARGW +++ E+D ASAWY VTYHP + + F
Sbjct: 1100 VDALHREARGWL---------LSSRKEEDASRMASAWYRVTYHP-------DRRRGKRFW 1111
BLAST of CmoCh04G022260 vs. Swiss-Prot
Match:
RDR6_ARATH (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1)
HSP 1 Score: 563.5 bits (1451), Expect = 5.2e-159
Identity = 392/1101 (35.60%), Postives = 575/1101 (52.23%), Query Frame = 1
Query: 103 RLEKVRVQLGSVIWKDEMRVIWRGE--DWSVEYGNGMRKLWFYLS----------YGVED 162
+L + +++G+++ +D+ V WR E D+ V+ + K F S + V +
Sbjct: 131 KLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVIN 190
Query: 163 DDYKMELRFENILGV-QLRCPHNSSSNLFLIQLQGAPRIFKKCPSSSSSSSSQFYSKEST 222
DYK+EL +I V Q + H + ++QL +PR++ + + +
Sbjct: 191 CDYKLELLVRDIQTVRQYKTLHGF---VLILQLASSPRVWYRTADDDIYDTVPGDLLDDD 250
Query: 223 GFRWIRDVDFTPSSCIGQSFALCFEVSPGDQ------LPSFFQTLVGYKEIYGPFKLSTG 282
WIR DFT IG+ + +SP + L F V + + P ++
Sbjct: 251 D-PWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNE 310
Query: 283 SAFSSTSNLVPIVTPPQPFH----IPYKILFKINALVQHGYLPGSALDDKFFRLVDPTRF 342
F P+ H I ++I+F +N+++ G L ++FF L+
Sbjct: 311 PCFGE-----PVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLL--RNQ 370
Query: 343 RSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQIT 402
D +L+ L + K ++ K LK + +L S D S + R+ IT
Sbjct: 371 PKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDIS--EIRRLVIT 430
Query: 403 PAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIYSSDLS--------PRTST 462
P + Y PE LSNRV+RR+ + FLRV+F+DE + I S+ LS TS+
Sbjct: 431 PTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSS 490
Query: 463 EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIREWM 522
++T V+ R+ S+L +G + G+K+ FLAFSA+QLR+ S W FA +DI+ WM
Sbjct: 491 SFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWM 550
Query: 523 GDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEV-IPDVEVERKNIKYCFSDGIGKIS 582
G F++ +NVAK AAR+G F S+ T+ V +E++ +PD+E Y FSDGIG I+
Sbjct: 551 GKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTIT 610
Query: 583 EALAEMVAEKCGL-ISHTPSAFQIRYAGYKGVVAVDPTSKK--KLSLRKSMLKYMSLDTQ 642
LA+ V EK L + ++P A+QIRYAG+KGVVA P+ +L+LR SM K+ S T
Sbjct: 611 PDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTI 670
Query: 643 LDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKALEVLELM 702
L++ SW+++QP FLNRQ+I LLS LG+ D++F Q+ + +L+ IL D A EVL
Sbjct: 671 LEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTAS 730
Query: 703 SPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTMMGCLDET 762
+ + + + P EP L ML + R +L LR KSRIFV GR +MGCLDE
Sbjct: 731 CAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEA 790
Query: 763 RTLEYGQVFIHCSVPG----------RSSESNF---VVKGKVVVAKNPCLHPGDVRVLDA 822
LE+GQ FI S P R E+ VVKG V +AKNPCLHPGDVR+L+A
Sbjct: 791 GILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEA 850
Query: 823 VDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAP 882
VDV LHHM DC++FPQKG RPH NE SGSDLDGDLYFV WD +L P + + P
Sbjct: 851 VDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLI------PPNRKSYP 910
Query: 883 TIQLDHDVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGL 942
+ D +E A H D+I ++FA + N+ L
Sbjct: 911 AMHYD-------AAEEKSLGRAVNH----------QDII---------DFFARNLANEQL 970
Query: 943 GGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEK 1002
G I NAH V AD+ AM EC+ LA+L + AVDFPKTG ++P L+ YPDFM K
Sbjct: 971 GTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGK 1030
Query: 1003 PNKRTYTSNGVIGKLFRGVKDV-SSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFD 1062
+ +TY SN ++G+L+R VK+V D + + +A YD +E+ GFE+ + EA+
Sbjct: 1031 EDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWG 1090
Query: 1063 YKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND--MEQISLAMRSLRKEARG 1122
+K +YD +L L+ Y ++ E E+V+G+I M K K+ E++ + SL+KE R
Sbjct: 1091 HKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRK 1150
Query: 1123 WFNEKGSKSIYNNNKDEDDEY-AKASAWYHVTYHPNFWGRYNEGMQRDH-----FLSFPW 1147
F E + ++++ Y KASAWYHVTYHP + + E D LSF W
Sbjct: 1151 VFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAW 1181
BLAST of CmoCh04G022260 vs. TrEMBL
Match:
A0A0S1YCZ4_CUCSA (RNA-dependent RNA polymerase 1c OS=Cucumis sativus GN=RDR1c PE=2 SV=1)
HSP 1 Score: 1722.6 bits (4460), Expect = 0.0e+00
Identity = 870/1152 (75.52%), Postives = 962/1152 (83.51%), Query Frame = 1
Query: 5 GKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAE 64
GKTIE++GF +V+A EVKEF+ENHTG+GTVS VRISKPK EK+R TS V F+SK+AAE
Sbjct: 2 GKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAE 61
Query: 65 YVVEKAEAEER-LWFGRWYLKARRVERE--REREMRVERLERLEKVRVQLGSVIWKDEMR 124
Y+V K+ EER LWF YLKAR +E+ V +ER+E V+ LGS+I +MR
Sbjct: 62 YIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKMR 121
Query: 125 VIWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQ 184
VIW GE WSVE+GNG RKLWFYLSY V D+YKMEL FENIL V+ RCP N S FLIQ
Sbjct: 122 VIWEGEKWSVEFGNGFRKLWFYLSYEV--DEYKMELCFENILSVEFRCPLNEPSKFFLIQ 181
Query: 185 LQGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQL 244
LQGAPRIF+K PSSSSS YS +ST FRWIRDVDFTPSSCIGQSF +C ++SP L
Sbjct: 182 LQGAPRIFRKTPSSSSSP---LYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHL 241
Query: 245 PSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYL 304
P FFQTLVGYK Y PF L GS+ S SNLVPI+TPPQ F I YKILFKINAL+QHGYL
Sbjct: 242 PPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYL 301
Query: 305 PGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 364
G LDD+FFRLVD +RF SDYIE+ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK
Sbjct: 302 SGPTLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWK 361
Query: 365 ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIY 424
+NISLDD LVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK++
Sbjct: 362 SNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLH 421
Query: 425 SSDLSPRTST-EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 484
S DL+PR+S+ E +RTRVYDR++S+L+NGIVIG KKFEFLAFSASQLRENSFWMFASRE
Sbjct: 422 SIDLAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASRE 481
Query: 485 GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKY 544
GL+AADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPDVEVERKNI Y
Sbjct: 482 GLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMY 541
Query: 545 CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 604
CFSDGIGKIS+ LA+ VAEKCGL SHTPSAFQIRYAGYKGVVA+DPTS+KKLSLRKSMLK
Sbjct: 542 CFSDGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLK 601
Query: 605 YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKA 664
YMSLDTQLDVL WSKYQPCFLNRQVINLLSTLGI+DDVFVK+QK+A+DQLDSIL DPS+A
Sbjct: 602 YMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRA 661
Query: 665 LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTM 724
LEVLELMSPGEMTS+LK++L FY P++EPFLNMMLRTFRADKLLDLRTKSRIFVP+GRTM
Sbjct: 662 LEVLELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTM 721
Query: 725 MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 784
MGCLDET+TLEYGQVF+HCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVR+LDA+DVK L
Sbjct: 722 MGCLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKAL 781
Query: 785 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 844
HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD EL
Sbjct: 782 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTEL--------------------- 841
Query: 845 DVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANA 904
C +++ S I L H EVQEYFANYMVNDGLG IANA
Sbjct: 842 -----TCIKQVKPMSYKPAPTI--------QLDHDVTIEEVQEYFANYMVNDGLGAIANA 901
Query: 905 HTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTY 964
HTVFADK KKAMSAECI+LAKLFSIAVDFPKTGVPANLPR+LRVHEYPDFM+KPNK TY
Sbjct: 902 HTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKATY 961
Query: 965 TSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDF 1024
SNGV+GKLFRGVKDVSSD++ E FTREVA KCYDPDMEV GFE YL EAFDYK+ YDF
Sbjct: 962 VSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDF 1021
Query: 1025 KLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKS 1084
KLGNLMDYYGI+TEPELVSGNIL+M KSFDKR D+EQI+ AM+SLRKE R WFNE SKS
Sbjct: 1022 KLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQIAFAMKSLRKEVRFWFNENESKS 1081
Query: 1085 IYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKM- 1144
Y+ D DEYA+ASAWY VTYHP++WG YNEG +RDHFLSFPWCV++KLIQIKREKM
Sbjct: 1082 TYD---DIQDEYARASAWYCVTYHPDYWGCYNEGTKRDHFLSFPWCVADKLIQIKREKMS 1111
Query: 1145 --ESSPVSSLIH 1150
SSP SSL+H
Sbjct: 1142 MRNSSPKSSLLH 1111
BLAST of CmoCh04G022260 vs. TrEMBL
Match:
A0A0A0KRH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G564290 PE=4 SV=1)
HSP 1 Score: 1721.8 bits (4458), Expect = 0.0e+00
Identity = 869/1154 (75.30%), Postives = 962/1154 (83.36%), Query Frame = 1
Query: 5 GKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAE 64
GKTIE++GF +V+A EVKEF+ENHTG+GTVS VRISKPK EK+R TS V F+SK+AAE
Sbjct: 2 GKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAE 61
Query: 65 YVVEKAEAEER-LWFGRWYLKARRVERE--REREMRVERLERLEKVRVQLGSVIWKDEMR 124
Y+V K+ EER LWF YLKAR +E+ + V +ER+E V+ LGS+I +MR
Sbjct: 62 YIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKMR 121
Query: 125 VIWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQ 184
VIW GE WSVE+GNG RKLWFYLSY V D+YKMEL FENIL V+ RCP N S FLIQ
Sbjct: 122 VIWEGEKWSVEFGNGFRKLWFYLSYEV--DEYKMELCFENILSVEFRCPLNEPSKFFLIQ 181
Query: 185 LQGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQL 244
LQGAPRIF+K PSSSSS YS +ST FRWIRDVDFTPSSCIGQSF +C ++SP L
Sbjct: 182 LQGAPRIFRKTPSSSSSP---LYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHL 241
Query: 245 PSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYL 304
P FFQTLVGYK Y PF L GS+ S SNLVPI+TPPQ F I YKILFKINAL+QHGYL
Sbjct: 242 PPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYL 301
Query: 305 PGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 364
G LDD+FFRLVD +RF SDYI++ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK
Sbjct: 302 SGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWK 361
Query: 365 ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIY 424
+NISLDD LVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK++
Sbjct: 362 SNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLH 421
Query: 425 SSDLSPRTST-EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 484
S DL+PR+S+ E +RTRVYDR++SVL+NGIVIG KKFEFLAFSASQLRENSFWMFASRE
Sbjct: 422 SIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASRE 481
Query: 485 GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKY 544
GL+AADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPDVEVERKNI Y
Sbjct: 482 GLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMY 541
Query: 545 CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 604
CFSDGIGKIS+ LA+ VAEKCGLI+HTPSAFQIRYAGYKGVVA+DPTSKKKLSLR SMLK
Sbjct: 542 CFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLK 601
Query: 605 YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKA 664
YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGI DDVFVK+QK+A+DQLDSIL DPS+A
Sbjct: 602 YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRA 661
Query: 665 LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTM 724
LEVLELMSPGEMTS+LK++L FY P+EEPFLNMMLRTFRA+KLLDL+TKSRIFVPEGRTM
Sbjct: 662 LEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTM 721
Query: 725 MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 784
+GCLDETRTLEYGQVF+HCSVP RSSE NFVVKGK+VVAKNPCLHPGDVRVLDAVDVK L
Sbjct: 722 IGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKAL 781
Query: 785 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 844
HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYF CWD EL
Sbjct: 782 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLEL--------------------- 841
Query: 845 DVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANA 904
C +++ + I L H E+QEYFANYMVNDG+G IANA
Sbjct: 842 -----TCIKQVKPMNYEPAPTI--------QLNHDVTIEEIQEYFANYMVNDGIGAIANA 901
Query: 905 HTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTY 964
HTVFADK KKAMS ECI+LAKLFSIAVDFPKTGVPANLPR+LRVHEYPDFM+KPNK TY
Sbjct: 902 HTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTY 961
Query: 965 TSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDF 1024
SNGV+GKLFRGVKDVSSD+N E FTREVA K YDPDMEV GFE YL EAFDYK+ YDF
Sbjct: 962 VSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDF 1021
Query: 1025 KLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKS 1084
KLGNLMDYYGI+TEPELVSGN+L+M KSFDKRND+EQI+ AM+SLRKE R WFNE SK
Sbjct: 1022 KLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKF 1081
Query: 1085 IYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKM- 1144
Y+ D +DEYAKASAWY+VTYHP++WG YNEGMQRDHFLSFPWCV++KLIQIKR+KM
Sbjct: 1082 TYD---DIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMT 1113
Query: 1145 --ESSPVSSLIHKF 1152
S PVSSL H F
Sbjct: 1142 LKNSYPVSSLFHNF 1113
BLAST of CmoCh04G022260 vs. TrEMBL
Match:
E5GB63_CUCME (RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo PE=4 SV=1)
HSP 1 Score: 1666.0 bits (4313), Expect = 0.0e+00
Identity = 855/1176 (72.70%), Postives = 955/1176 (81.21%), Query Frame = 1
Query: 6 KTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAEY 65
KTIE++GFG +V+ EVKEF+ENHTG+GTVS VRISKPK +K+R TS V F+SK+AAEY
Sbjct: 3 KTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAAEY 62
Query: 66 VVEKAEAEER-LWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRVIW 125
+V KA EE+ LWF YLKAR VE++ +ER+E V+ QLGS+I KD+MRVIW
Sbjct: 63 IVAKATTEEKKLWFESSYLKAREVEKKATSGG--PEMERMEDVKGQLGSMISKDKMRVIW 122
Query: 126 RGEDWSVEYGNGMRKLWFYLSYGVE--------DDDYKMELRF-----ENILGVQLRCPH 185
GE W+VE+GNG+RKLWFYLSY V+ ++ +E R +Q+
Sbjct: 123 EGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLIQVSSFF 182
Query: 186 NSSSNLFL-----IQLQ-GAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCI 245
S + FL ++LQ APRIF+K PSSSSS YS ES FRWIRDVDFTPSSCI
Sbjct: 183 LSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSP---LYSNESNSFRWIRDVDFTPSSCI 242
Query: 246 GQSFALCFEVSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIP 305
GQSF LC + SP LP FFQTLVGYK Y PF L GS+F S SNLVPI+TPPQ F I
Sbjct: 243 GQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDIS 302
Query: 306 YKILFKINALVQHGYLPGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWL 365
YKILFKINAL+Q GYL G LDD+FFRLVD +RF DYIE+ALEKLF+LKECCY+PQKWL
Sbjct: 303 YKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWL 362
Query: 366 KQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDID 425
K QYLS+ S QLPWK N+SLDD LVYVHRVQITP KVYF GPEANLSNRVVRRFIDDID
Sbjct: 363 KDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDID 422
Query: 426 NFLRVSFVDEELDKIYSSDLSPRTST-EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFS 485
NFLRVSFVDEELDK++S DL+PR+S+ E RTRVYDR++SVL+NGIVIG KKFEFLAFS
Sbjct: 423 NFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFS 482
Query: 486 ASQLRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENE 545
ASQLRENSFWMFASR+GL+AADIREWMGDFR+IRNVAKYAARLGQSFGSSRKTLCV+E+E
Sbjct: 483 ASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHE 542
Query: 546 IEVIPDVEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAV 605
IEVIPDVEVERKNI YCFSDGIGKIS+ LA+ VA+KCGL HTPSAFQIRYAGYKGVVA+
Sbjct: 543 IEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAI 602
Query: 606 DPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQK 665
DPTS+KKLSLRKSMLKYMSLDTQLDVL WSKYQPCFLNRQVINLLSTLGI DDVFVK+QK
Sbjct: 603 DPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQK 662
Query: 666 KAVDQLDSILRDPSKALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLL 725
+A+DQLDSIL DPS+ALEVLELMSPGEMTS+LK++L FY P+EEPFLNMML TFRA+KLL
Sbjct: 663 EAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLL 722
Query: 726 DLRTKSRIFVPEGRTMMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCL 785
DL+TKSRIFVP GRTMMGCLDETRTLEYGQVF+HCSVPGRSSE NFVVKGKVVVAKNPCL
Sbjct: 723 DLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCL 782
Query: 786 HPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRP 845
HPGDVR+LDA+DVK LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD EL
Sbjct: 783 HPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSEL----- 842
Query: 846 IKPMSYEPAPTIQLDHDVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEY 905
C +++ S I L H EVQ+Y
Sbjct: 843 ---------------------TCIKQVKPMSYEPAPSI--------QLDHDVTIEEVQKY 902
Query: 906 FANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLR 965
FANYMVNDGLG IANAHTVFADK KKAMSAECI+LAKLFSIAVDFPKTGVPANLPR+LR
Sbjct: 903 FANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLR 962
Query: 966 VHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGF 1025
VHEYPDFM+KP+K TY SNGV+GKLFRGVKDVSSD+N E FT+EVA KCYDPDMEV GF
Sbjct: 963 VHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDMEVDGF 1022
Query: 1026 ENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRS 1085
E YL EAFDYK+ YDFKLGNLMDYYGI+TEPELVSGNIL+M KSFDKRND+EQI+ AM+S
Sbjct: 1023 EKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIAFAMKS 1082
Query: 1086 LRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFP 1145
LRKE R WFNE SK Y + EDDEYA+ASAWY VTYHP++WGRYNEG QRDHFLSFP
Sbjct: 1083 LRKEVRSWFNENESKYTYED--IEDDEYARASAWYCVTYHPDYWGRYNEGTQRDHFLSFP 1137
Query: 1146 WCVSEKLIQIKREKM---ESSPVSSLIHKFGKLSFY 1158
WCV++KLIQIKREKM SSP+SSL + F +S Y
Sbjct: 1143 WCVADKLIQIKREKMSLRNSSPMSSLQYNFDGMSLY 1137
BLAST of CmoCh04G022260 vs. TrEMBL
Match:
B3SND7_GOSHI (RNA-dependent RNA polymerase OS=Gossypium hirsutum PE=4 SV=1)
HSP 1 Score: 1264.6 bits (3271), Expect = 0.0e+00
Identity = 665/1154 (57.63%), Postives = 837/1154 (72.53%), Query Frame = 1
Query: 5 GKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAE 64
GKTI+V+GF +VSAGEVK F+E +TG TV ++I + K KS A V+F A
Sbjct: 2 GKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK--KSGRAFAIVQFTRSSDAG 61
Query: 65 YVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRVIW 124
++ A +RL++GR YLKAR +E + + RV L +E+V V G + +++ V+W
Sbjct: 62 LIIRLAN--QRLYYGRSYLKAREMETDIVPKPRVF-LHTMERVTVNFGCQVSEEKFYVLW 121
Query: 125 RGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQG 184
+ ++ ++ +G GMRKL F LSY YK+EL +ENI ++LRCPH+ +S LIQL G
Sbjct: 122 KADNVTLNFGTGMRKLEFLLSYC--SSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFG 181
Query: 185 APRIFKK-CPSSSSSSSSQF--YSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQL 244
APRI++K P+S Y K+ +W+R DFT S+CIGQS L E+ QL
Sbjct: 182 APRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQL 241
Query: 245 PSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYL 304
P+F + YKE G L +GS++S +LVPIV P + +P++ILFK+N LVQ+G +
Sbjct: 242 PNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCI 301
Query: 305 PGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 364
PG ALDD F+RLVDP R YI++ALEKL+ L+ECCYEP +WL ++Y +F S +
Sbjct: 302 PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 361
Query: 365 ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIY 424
ISLD+ LVYV RVQITP++VYF GPE N+SNRV+R+F +DIDNFLR+SFVDEEL+KI+
Sbjct: 362 PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 421
Query: 425 SSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREG 484
S+++ R RT +Y RILS LRNGIVIG K+FEFLAFS+SQLRENS WMFASR+G
Sbjct: 422 STNVQARG-----RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKG 481
Query: 485 LNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYC 544
L AADIR WMG+F +IRNVAKYAARLGQSF SS +TL V ++EI +IPD+E+ + IKY
Sbjct: 482 LTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYV 541
Query: 545 FSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKY 604
FSDGIGKIS A+ VA KC L TPSAFQIR G+KGVVA+DPTS KLSLRKSM KY
Sbjct: 542 FSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKY 601
Query: 605 MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKAL 664
S +T+LDVL+WSKYQPCFLNRQ+I LLSTLG+ D F K+Q++ VDQL+++L DP +A
Sbjct: 602 ESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQ 661
Query: 665 EVLELMSPGEMTSVLKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTM 724
E LELMSPGE T++LK+MLL Y P EPFL+MML TFRA KLL+LRTK+RIFV +GR+M
Sbjct: 662 EALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSM 721
Query: 725 MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 784
MGCLDETRTL YGQVF+ S G SE F+V+GKV+VAKNPCLHPGDVRVL AV+V L
Sbjct: 722 MGCLDETRTLNYGQVFVQFS--GSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDL 781
Query: 785 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 844
HHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWDPEL P Q+D
Sbjct: 782 HHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELI-------------PYKQID- 841
Query: 845 DVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANA 904
+ S A+T L H E++EYF NY+VND LG I+NA
Sbjct: 842 ---------PMDYSPAST-----------TKLDHEVTIEEIEEYFTNYIVNDSLGIISNA 901
Query: 905 HTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTY 964
HT FAD++P KAMS C+ELAKLFSIAVDFPKTGVPA +P+ LRV EYPDFMEKP+K +Y
Sbjct: 902 HTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSY 961
Query: 965 TSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDF 1024
S+ VIGKLFR VK+++ + +I+ TRE + YDPDMEV GFE+Y+ +AF +KS YD+
Sbjct: 962 QSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDY 1021
Query: 1025 KLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKS 1084
KLGNLMDYYG++TE E++ G I++M +SF K+ D E IS+A+RSLRKEAR WFNEKGS+
Sbjct: 1022 KLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSEL 1081
Query: 1085 IYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREK-- 1144
+++ DD YAKASAWY+VTYHP++WG+YNEGM RDHFLSFPWCV +KLIQIK+EK
Sbjct: 1082 ----DEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAA 1103
Query: 1145 -MESSPVSSLIHKF 1152
E+ +SSL H+F
Sbjct: 1142 VREALDLSSLEHRF 1103
BLAST of CmoCh04G022260 vs. TrEMBL
Match:
A0A0B0PJ54_GOSAR (RNA-dependent RNA polymerase 1-like protein OS=Gossypium arboreum GN=F383_00397 PE=4 SV=1)
HSP 1 Score: 1259.6 bits (3258), Expect = 0.0e+00
Identity = 664/1154 (57.54%), Postives = 834/1154 (72.27%), Query Frame = 1
Query: 5 GKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAE 64
GKTI+V+GF +VSAGEVK F+E +TG TV ++I + K KS A V+F A
Sbjct: 2 GKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK--KSGRAYAIVQFTRSSDAG 61
Query: 65 YVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRVIW 124
++ A +RL++GR YLKAR +E + + RV L +E+V V G + +++ V+W
Sbjct: 62 LIIRLAN--QRLYYGRSYLKAREMETDIVPKPRVF-LHTMERVTVNFGCQVSEEKFYVLW 121
Query: 125 RGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQG 184
+ ++ ++ +G GMRKL F LSY YK+EL +ENI ++LRCPH+ +S LIQL G
Sbjct: 122 KADNVTLNFGTGMRKLEFLLSYC--SSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFG 181
Query: 185 APRIFKKCPSSSSSSSSQ---FYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQL 244
APRI++ +S Y K+ +W+R DFT S+CIGQS LC E+ QL
Sbjct: 182 APRIYETEVRASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQL 241
Query: 245 PSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYL 304
P+F + YKE G L +GS++S +LVPIV P + +P++ILFK+N LVQ+G +
Sbjct: 242 PNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCI 301
Query: 305 PGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 364
PG ALDD F+RLVDP R YI++ALEKL+ L+ECCYEP +WL ++Y +F S +
Sbjct: 302 PGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGS 361
Query: 365 ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIY 424
ISLD+ LVYV RVQITP++VYF GPE N+SNRV+R+F +DIDNFLR+SFVDEEL+KI+
Sbjct: 362 PTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIH 421
Query: 425 SSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREG 484
S+++ R RT +Y RILS LRNGIVIG K+FEFLAFS+SQLRENS WMFASR+G
Sbjct: 422 STNVQARG-----RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKG 481
Query: 485 LNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYC 544
L AADIR WMG+F +IRNVAKYAARLGQSF SS +TL V ++EI +IPD+E+ + IKY
Sbjct: 482 LTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYV 541
Query: 545 FSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKY 604
FSDGIGKIS A+ VA KC L TPSAFQIR G+KGVVA+DPTS KLSLRKSM KY
Sbjct: 542 FSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKY 601
Query: 605 MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKAL 664
S +T+LDVL+WSKYQPCFLNRQ+I LLSTLG+ D F K+Q++ VDQL+++L DP +A
Sbjct: 602 ESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQ 661
Query: 665 EVLELMSPGEMTSVLKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTM 724
E LELMSPGE T++LK+MLL Y P EPFL+MML TFRA KLL+LRTK+RIFV +GR+M
Sbjct: 662 EALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSM 721
Query: 725 MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 784
MGCLDETRTL YGQVF+ S G SE F+V+GKV+VAKNPCLHPGDVRVL AV+V L
Sbjct: 722 MGCLDETRTLNYGQVFVQFS--GSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDL 781
Query: 785 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 844
HHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWDPEL P Q+D
Sbjct: 782 HHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELI-------------PYKQID- 841
Query: 845 DVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANA 904
+ S A+T L H E++EYF NY+VND LG I+NA
Sbjct: 842 ---------PMDYSPAST-----------TKLDHEVTIEEIEEYFTNYIVNDSLGIISNA 901
Query: 905 HTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTY 964
HT FAD++P KAMS C+ELAKLFSIAVDFPKTGVPA +P+ LRV E+PDFMEKP+K +Y
Sbjct: 902 HTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSY 961
Query: 965 TSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDF 1024
S VIGKLFR VK+++ + +I+ TRE + YDPDMEV GFE+Y+ +AF YKS YD+
Sbjct: 962 QSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFEDYIDDAFFYKSKYDY 1021
Query: 1025 KLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKS 1084
KLGNLMDYYG++TE E++SG I++M +SF K+ D E IS+A+RSLRKEAR WFNEKGS+
Sbjct: 1022 KLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAEVISMAVRSLRKEARSWFNEKGSEL 1081
Query: 1085 IYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREK-- 1144
+++ DD YAKASAWY+VTYH ++WG+YNEGM RDHFLSFPWCV +KLIQIK+EK
Sbjct: 1082 ----DEEIDDAYAKASAWYYVTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAA 1103
Query: 1145 -MESSPVSSLIHKF 1152
E+ +SSL H F
Sbjct: 1142 LREALDLSSLEHCF 1103
BLAST of CmoCh04G022260 vs. TAIR10
Match:
AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)
HSP 1 Score: 1144.8 bits (2960), Expect = 0.0e+00
Identity = 622/1140 (54.56%), Postives = 784/1140 (68.77%), Query Frame = 1
Query: 5 GKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAE 64
GKTI+VFGF VSA EVK+F+E TG GTV +++ +PK R+ A V+F S+
Sbjct: 2 GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVY-AIVQFTSERHTR 61
Query: 65 YVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRVIW 124
++ A ERL++GR YLKA VE++ + R L + +++ G + + +W
Sbjct: 62 LII--TAAAERLYYGRSYLKAFEVEQDIVPKPRAS-LHTISGLKMFFGCQVSTKKFLTLW 121
Query: 125 RGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQG 184
+D V +G GMRKL F S+ DY++EL +ENI + L P SS +IQ+ G
Sbjct: 122 SAQDVCVSFGIGMRKLHFSFSW--YQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIG 181
Query: 185 APRIFKK--CPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLP 244
AP+IF+K P + FYS + + +WIR DFT SSCIGQS A C E+ +P
Sbjct: 182 APKIFEKEDQPINLLFGIMDFYS-DGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP 241
Query: 245 SFFQTLVGYKEIYGP-FKLSTGSAFSSTSN-LVPIVTPPQPFHIPYKILFKINALVQHGY 304
F + Y E F + +GS++SS +N LVP+V PP F +P++ILFK+N LVQ+
Sbjct: 242 DFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNAC 301
Query: 305 LPGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPW 364
L G ALD F+RL++ ++ I++ LEKLF L ECCYEP WL+ +Y + S +LP
Sbjct: 302 LSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPL 361
Query: 365 KANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKI 424
ISLDD LVY++RVQ+TPA+VYF GPE N+SNRV+R + I+NFLRVSFVDE+L+K+
Sbjct: 362 SPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKV 421
Query: 425 YSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 484
S DLSPR+ST++ RT++YDRI SVLR+GIVIG KKFEFLAFS+SQLRENS WMFA +
Sbjct: 422 RSMDLSPRSSTQR--RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 481
Query: 485 GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKY 544
+ AA IR WMGDF IRNVAKYAARLGQSF SSR+TL V +EIEVIPDVE+ +Y
Sbjct: 482 RITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRY 541
Query: 545 CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 604
FSDGIGKIS A VA KCGL +PSAFQIRY GYKGVVAVDP S KKLSLRKSM K
Sbjct: 542 VFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSK 601
Query: 605 YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKA 664
+ S +T+LDVL+WSKYQPC++NRQ+I LLSTLG+ D VF K+Q++ VD+LD+IL P +A
Sbjct: 602 FESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEA 661
Query: 665 LEVLELMSPGEMTSVLKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRT 724
E L LM+PGE T++LK ++L Y P EPFL+MML+ FRA KLL+LRTK+RIF+ GR+
Sbjct: 662 HEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRS 721
Query: 725 MMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKT 784
MMGCLDETRTLEYGQV + S P R F++ G VVVAKNPCLHPGDVRVL AV+V
Sbjct: 722 MMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNVPA 781
Query: 785 LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLD 844
L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL R +PM Y P PT LD
Sbjct: 782 LNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILD 841
Query: 845 HDVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIAN 904
HDVTIE +E F ++I+ + IA+ F E
Sbjct: 842 HDVTIEE-VEEYF-----ANYIVNDSLGIIANAHTAFADKE------------------- 901
Query: 905 AHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRT 964
P KA S CIELAK FS AVDFPKTGV A +P+ L V EYPDFMEKP+K T
Sbjct: 902 ---------PLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPT 961
Query: 965 YTSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYD 1024
Y S VIGKLFR VK+ + + +I++FT +VA+K YD DMEV GFE Y+ EAF K+ YD
Sbjct: 962 YESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYD 1021
Query: 1025 FKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSK 1084
FKLGNLMDYYGI+TE E++SG I+RM KSF KR D E I A+R+LRKE +
Sbjct: 1022 FKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKE---------TL 1081
Query: 1085 SIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKM 1140
S++N +++E++E AKASAWYHVTYH ++WG YNEG+ RDHFLSF WCV +KL++IK+ +
Sbjct: 1082 SLFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNL 1088
BLAST of CmoCh04G022260 vs. TAIR10
Match:
AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)
HSP 1 Score: 713.0 bits (1839), Expect = 3.0e-205
Identity = 453/1182 (38.32%), Postives = 649/1182 (54.91%), Query Frame = 1
Query: 3 TKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVA 62
T T+++ + + A E+ F+E H GE TV + I + ARV+F + +
Sbjct: 7 TNRSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTT-LE 66
Query: 63 AEYVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRV 122
+ + ++ +L F L+ + V+ +RL+ + + +G DE R
Sbjct: 67 VKSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRP-VDPRKRLDDIVLTVGFPE-SDEKRF 126
Query: 123 I----WRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNL- 182
W G + + W + S D YK+E+RFE+I+ C + +S +
Sbjct: 127 CALEKWDGVRCWILTEKRRVEFWVWES----GDCYKIEVRFEDIIETLSCCVNGDASEID 186
Query: 183 -FLIQLQGAPRIFKKCP---SSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCF 242
FL++L+ P++FK+ ++ S + KE F WIR DF+ S IG S C
Sbjct: 187 AFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCL 246
Query: 243 EVSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPP-QPFHIPYKILFKI 302
EV G + F L Y+E G F+S + +VP++ PY+ILF++
Sbjct: 247 EVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQL 306
Query: 303 NALVQHGYLPGSALDDKFFRLVDPTRFRS-DYIEYALEKLFSLKECCYEPQKWLKQQYLS 362
NALV + A D L+ R S + L+KL CY+P ++K Q S
Sbjct: 307 NALVHAQKISLFAASD--MELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQS 366
Query: 363 FCSSMQ-LPWKANISL-DDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLR 422
M+ P A L + +++ R +TP+K+Y GPE +N VV+ F + + +F+R
Sbjct: 367 VVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMR 426
Query: 423 VSFVDEELDKIYSSDLSPRTSTE---KIERTRVYDRILSVLRNGIVIGGKKFEFLAFSAS 482
V+FV+E+ K+ ++ LS + K RT +Y+R+LS+L GI +G K+FEFLAFSAS
Sbjct: 427 VTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSAS 486
Query: 483 QLRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIE 542
QLR NS WMFAS E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V ++E
Sbjct: 487 QLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVE 546
Query: 543 VIPDVEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDP 602
IPD+EV YCFSDGIGKIS A A+ VA+KCGL SH PSAFQIRY GYKGV+AVD
Sbjct: 547 QIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDR 606
Query: 603 TSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKA 662
+S +KLSLR SMLK+ S + L+V W++ PCFLNR++I LLSTLGI+D +F Q
Sbjct: 607 SSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVH 666
Query: 663 VDQLDSILRDPSKALEVLELMSPGEMTSVLKDMLL-FYNPHEEPFLNMMLRTFRADKLLD 722
+ L ++L D AL VL+ +S ++L MLL Y P EP+L+MMLR +L +
Sbjct: 667 LSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSE 726
Query: 723 LRTKSRIFVPEGRTMMGCLDETRTLEYGQVFIHCSVP------------GRSSESNFVVK 782
L+++ RI VP+GR ++GC+DE LEYGQV++ ++ + E VV
Sbjct: 727 LKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVI 786
Query: 783 GKVVVAKNPCLHPGDVRVLDAVDVKTLHH--MVDCVVFPQKGKRPHPNECSGSDLDGDLY 842
GKVVV KNPCLHPGD+RVLDA+ +DC++FPQKG+RPHPNECSG DLDGD +
Sbjct: 787 GKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQF 846
Query: 843 FVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEVCFQELFTSSANTHFIIFFLIIYIAD 902
FV WD ++ PM Y + +DHDVT+E
Sbjct: 847 FVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEE------------------------- 906
Query: 903 LIHRFEQIEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFP 962
IH+F +Y + D LG I+ AH V AD+ P+KA S +C+ELA L S AVDF
Sbjct: 907 -IHKF----FVDYMIS----DTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFA 966
Query: 963 KTGVPANLPRSLRVHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVA 1022
KTG PA +P +L+ E+PDF+E+ K TY S V GKL+R VK S + +
Sbjct: 967 KTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVK---SSLAQRKPEAESED 1026
Query: 1023 AKCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDK 1082
YD +E GFE+++ A ++ MY KL +LM YYG E E+++G IL+ + +
Sbjct: 1027 TVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEILTG-ILKTKEMYLA 1086
Query: 1083 RND------MEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHP 1142
R++ ++I+L+++ L KEA GWF + + +DE + ASAWY+VTY+P
Sbjct: 1087 RDNRRYGDMKDRITLSVKDLHKEAMGWFEK--------SCEDEQQKKKLASAWYYVTYNP 1123
Query: 1143 NFWGRYNEGMQRDH---FLSFPWCVSEKLIQIKREKMESSPV 1145
N RD FLSFPW V + L+ IK E + V
Sbjct: 1147 N---------HRDEKLTFLSFPWIVGDVLLDIKAENAQRQSV 1123
BLAST of CmoCh04G022260 vs. TAIR10
Match:
AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)
HSP 1 Score: 563.5 bits (1451), Expect = 2.9e-160
Identity = 392/1101 (35.60%), Postives = 575/1101 (52.23%), Query Frame = 1
Query: 103 RLEKVRVQLGSVIWKDEMRVIWRGE--DWSVEYGNGMRKLWFYLS----------YGVED 162
+L + +++G+++ +D+ V WR E D+ V+ + K F S + V +
Sbjct: 131 KLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVIN 190
Query: 163 DDYKMELRFENILGV-QLRCPHNSSSNLFLIQLQGAPRIFKKCPSSSSSSSSQFYSKEST 222
DYK+EL +I V Q + H + ++QL +PR++ + + +
Sbjct: 191 CDYKLELLVRDIQTVRQYKTLHGF---VLILQLASSPRVWYRTADDDIYDTVPGDLLDDD 250
Query: 223 GFRWIRDVDFTPSSCIGQSFALCFEVSPGDQ------LPSFFQTLVGYKEIYGPFKLSTG 282
WIR DFT IG+ + +SP + L F V + + P ++
Sbjct: 251 D-PWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNE 310
Query: 283 SAFSSTSNLVPIVTPPQPFH----IPYKILFKINALVQHGYLPGSALDDKFFRLVDPTRF 342
F P+ H I ++I+F +N+++ G L ++FF L+
Sbjct: 311 PCFGE-----PVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLL--RNQ 370
Query: 343 RSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQIT 402
D +L+ L + K ++ K LK + +L S D S + R+ IT
Sbjct: 371 PKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDIS--EIRRLVIT 430
Query: 403 PAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIYSSDLS--------PRTST 462
P + Y PE LSNRV+RR+ + FLRV+F+DE + I S+ LS TS+
Sbjct: 431 PTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSS 490
Query: 463 EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIREWM 522
++T V+ R+ S+L +G + G+K+ FLAFSA+QLR+ S W FA +DI+ WM
Sbjct: 491 SFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWM 550
Query: 523 GDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEV-IPDVEVERKNIKYCFSDGIGKIS 582
G F++ +NVAK AAR+G F S+ T+ V +E++ +PD+E Y FSDGIG I+
Sbjct: 551 GKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTIT 610
Query: 583 EALAEMVAEKCGL-ISHTPSAFQIRYAGYKGVVAVDPTSKK--KLSLRKSMLKYMSLDTQ 642
LA+ V EK L + ++P A+QIRYAG+KGVVA P+ +L+LR SM K+ S T
Sbjct: 611 PDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTI 670
Query: 643 LDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKALEVLELM 702
L++ SW+++QP FLNRQ+I LLS LG+ D++F Q+ + +L+ IL D A EVL
Sbjct: 671 LEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTAS 730
Query: 703 SPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTMMGCLDET 762
+ + + + P EP L ML + R +L LR KSRIFV GR +MGCLDE
Sbjct: 731 CAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEA 790
Query: 763 RTLEYGQVFIHCSVPG----------RSSESNF---VVKGKVVVAKNPCLHPGDVRVLDA 822
LE+GQ FI S P R E+ VVKG V +AKNPCLHPGDVR+L+A
Sbjct: 791 GILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEA 850
Query: 823 VDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAP 882
VDV LHHM DC++FPQKG RPH NE SGSDLDGDLYFV WD +L P + + P
Sbjct: 851 VDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLI------PPNRKSYP 910
Query: 883 TIQLDHDVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGL 942
+ D +E A H D+I ++FA + N+ L
Sbjct: 911 AMHYD-------AAEEKSLGRAVNH----------QDII---------DFFARNLANEQL 970
Query: 943 GGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEK 1002
G I NAH V AD+ AM EC+ LA+L + AVDFPKTG ++P L+ YPDFM K
Sbjct: 971 GTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGK 1030
Query: 1003 PNKRTYTSNGVIGKLFRGVKDV-SSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFD 1062
+ +TY SN ++G+L+R VK+V D + + +A YD +E+ GFE+ + EA+
Sbjct: 1031 EDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWG 1090
Query: 1063 YKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND--MEQISLAMRSLRKEARG 1122
+K +YD +L L+ Y ++ E E+V+G+I M K K+ E++ + SL+KE R
Sbjct: 1091 HKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRK 1150
Query: 1123 WFNEKGSKSIYNNNKDEDDEY-AKASAWYHVTYHPNFWGRYNEGMQRDH-----FLSFPW 1147
F E + ++++ Y KASAWYHVTYHP + + E D LSF W
Sbjct: 1151 VFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAW 1181
BLAST of CmoCh04G022260 vs. TAIR10
Match:
AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)
HSP 1 Score: 118.6 bits (296), Expect = 2.5e-26
Identity = 124/470 (26.38%), Postives = 201/470 (42.77%), Query Frame = 1
Query: 571 FQIRYAGYKGVVAVDPTSKK----KLSLRKSMLKY--------MSLDTQLDVLSWSKY-Q 630
F+I Y GY V T+KK + +R SM+K +S L+V++ S +
Sbjct: 455 FRIFYNGY-AVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPR 514
Query: 631 PCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSVLK 690
L+R ++ LLS G+ +D F+ + +++ +I A + + T+
Sbjct: 515 KARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTA--- 574
Query: 691 DMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTMMGCLDETRTLEYGQVFI 750
DM+L P +EP+L L + L+ R + E +MG +D T L+ ++
Sbjct: 575 DMILVGIPLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEI-- 634
Query: 751 HCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVD----CVVFPQKG 810
C + + G V+V +NP LH GD+ VL A VK L V V FPQKG
Sbjct: 635 -CVILHSGQ-----ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKG 694
Query: 811 KRPHPNECSGSDLDGDLYFVCWDPE-LTCIRPIKPMSYEPAPTI----QLDHDVTIEVCF 870
R +E +G D DGD+YF+ +P+ L +P +P P+ + +++ E
Sbjct: 695 PRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELE 754
Query: 871 QELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANAHTVFADK- 930
+ELF F D+I M D GI + D+
Sbjct: 755 EELFKMFLKARFC-------KRDVIG--------------MAADCWLGIMDPFLTLGDES 814
Query: 931 -KPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYTSNGVI 990
K K ++L ++ A+D PK G +LP L + +P +ME+ KR + S ++
Sbjct: 815 AKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSIL 874
Query: 991 GKLFRGV------KDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSE 1011
G +F V + S+I+ + F E K + D +ENY SE
Sbjct: 875 GLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSH-MDKFTSWYENYRSE 889
BLAST of CmoCh04G022260 vs. TAIR10
Match:
AT2G19920.1 (AT2G19920.1 RNA-dependent RNA polymerase family protein)
HSP 1 Score: 110.2 bits (274), Expect = 8.9e-24
Identity = 151/589 (25.64%), Postives = 252/589 (42.78%), Query Frame = 1
Query: 464 SASQLRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEEN 523
+AS EN + + G++ + R + + A Y AR ++K L V+
Sbjct: 318 TASSDMENPYIL----SGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMT 377
Query: 524 EIEV--IPDV--------EVERKNIK-YCFSDGIGKISEALAEM---------------V 583
EI V I D+ +V KN K SDG G ISE LA M +
Sbjct: 378 EITVMQIDDIHCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNI 437
Query: 584 AEKCGLISHTPSAFQIRY----AGYKGVVAVDPT-SKKKLSLRKSMLKY--------MSL 643
C + P QIR + KG+ ++ + + +R SM+K S
Sbjct: 438 QGTC--VQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFST 497
Query: 644 DTQLDVLSWSKY-QPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSI---LRDPSKA 703
L+V++ S + L++ ++ LLS G+ +D F+ +++ +I +R KA
Sbjct: 498 FNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKA 557
Query: 704 LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTM 763
L + + ++ M++ P +EP+L L + DL+ ++ + E +
Sbjct: 558 --ALHYGNMDDKNAL--QMIMAGIPLDEPYLKHYLSKLLKLEKDDLKA-GKLPIDESYYL 617
Query: 764 MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 823
MG +D T L+ +V S V+V +NP LH GD+ +L A VK+L
Sbjct: 618 MGTVDPTGELKEDEV------------SGLAKSQDVLVYRNPGLHFGDIHILKATYVKSL 677
Query: 824 HHMVDC----VVFPQKGKRPHPNECSGSDLDGDLYFVCWDPE-LTCIRPIKP-MSYEPAP 883
V V FPQKG R +E +G D DGD+YF+ +P+ L +P +P +S P
Sbjct: 678 EQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRS 737
Query: 884 TI---QLDHDVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVN 943
I + +++ E +ELF T F +I AD + + + F
Sbjct: 738 KIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAAD-----SWLAIMDRFLT---- 797
Query: 944 DGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDF 999
LG + K K M + ++L ++ A+D PKTG NLP ++V +P +
Sbjct: 798 --LGD--------ENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHY 856
BLAST of CmoCh04G022260 vs. NCBI nr
Match:
gi|948561979|gb|ALM88235.1| (RNA-dependent RNA polymerase 1c [Cucumis sativus])
HSP 1 Score: 1722.6 bits (4460), Expect = 0.0e+00
Identity = 870/1152 (75.52%), Postives = 962/1152 (83.51%), Query Frame = 1
Query: 5 GKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAE 64
GKTIE++GF +V+A EVKEF+ENHTG+GTVS VRISKPK EK+R TS V F+SK+AAE
Sbjct: 2 GKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAE 61
Query: 65 YVVEKAEAEER-LWFGRWYLKARRVERE--REREMRVERLERLEKVRVQLGSVIWKDEMR 124
Y+V K+ EER LWF YLKAR +E+ V +ER+E V+ LGS+I +MR
Sbjct: 62 YIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKMR 121
Query: 125 VIWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQ 184
VIW GE WSVE+GNG RKLWFYLSY V D+YKMEL FENIL V+ RCP N S FLIQ
Sbjct: 122 VIWEGEKWSVEFGNGFRKLWFYLSYEV--DEYKMELCFENILSVEFRCPLNEPSKFFLIQ 181
Query: 185 LQGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQL 244
LQGAPRIF+K PSSSSS YS +ST FRWIRDVDFTPSSCIGQSF +C ++SP L
Sbjct: 182 LQGAPRIFRKTPSSSSSP---LYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHL 241
Query: 245 PSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYL 304
P FFQTLVGYK Y PF L GS+ S SNLVPI+TPPQ F I YKILFKINAL+QHGYL
Sbjct: 242 PPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYL 301
Query: 305 PGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 364
G LDD+FFRLVD +RF SDYIE+ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK
Sbjct: 302 SGPTLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWK 361
Query: 365 ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIY 424
+NISLDD LVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK++
Sbjct: 362 SNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLH 421
Query: 425 SSDLSPRTST-EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 484
S DL+PR+S+ E +RTRVYDR++S+L+NGIVIG KKFEFLAFSASQLRENSFWMFASRE
Sbjct: 422 SIDLAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASRE 481
Query: 485 GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKY 544
GL+AADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPDVEVERKNI Y
Sbjct: 482 GLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMY 541
Query: 545 CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 604
CFSDGIGKIS+ LA+ VAEKCGL SHTPSAFQIRYAGYKGVVA+DPTS+KKLSLRKSMLK
Sbjct: 542 CFSDGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLK 601
Query: 605 YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKA 664
YMSLDTQLDVL WSKYQPCFLNRQVINLLSTLGI+DDVFVK+QK+A+DQLDSIL DPS+A
Sbjct: 602 YMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRA 661
Query: 665 LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTM 724
LEVLELMSPGEMTS+LK++L FY P++EPFLNMMLRTFRADKLLDLRTKSRIFVP+GRTM
Sbjct: 662 LEVLELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTM 721
Query: 725 MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 784
MGCLDET+TLEYGQVF+HCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVR+LDA+DVK L
Sbjct: 722 MGCLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKAL 781
Query: 785 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 844
HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD EL
Sbjct: 782 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTEL--------------------- 841
Query: 845 DVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANA 904
C +++ S I L H EVQEYFANYMVNDGLG IANA
Sbjct: 842 -----TCIKQVKPMSYKPAPTI--------QLDHDVTIEEVQEYFANYMVNDGLGAIANA 901
Query: 905 HTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTY 964
HTVFADK KKAMSAECI+LAKLFSIAVDFPKTGVPANLPR+LRVHEYPDFM+KPNK TY
Sbjct: 902 HTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKATY 961
Query: 965 TSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDF 1024
SNGV+GKLFRGVKDVSSD++ E FTREVA KCYDPDMEV GFE YL EAFDYK+ YDF
Sbjct: 962 VSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDF 1021
Query: 1025 KLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKS 1084
KLGNLMDYYGI+TEPELVSGNIL+M KSFDKR D+EQI+ AM+SLRKE R WFNE SKS
Sbjct: 1022 KLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQIAFAMKSLRKEVRFWFNENESKS 1081
Query: 1085 IYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKM- 1144
Y+ D DEYA+ASAWY VTYHP++WG YNEG +RDHFLSFPWCV++KLIQIKREKM
Sbjct: 1082 TYD---DIQDEYARASAWYCVTYHPDYWGCYNEGTKRDHFLSFPWCVADKLIQIKREKMS 1111
Query: 1145 --ESSPVSSLIH 1150
SSP SSL+H
Sbjct: 1142 MRNSSPKSSLLH 1111
BLAST of CmoCh04G022260 vs. NCBI nr
Match:
gi|778703938|ref|XP_011655453.1| (PREDICTED: probable RNA-dependent RNA polymerase 1 [Cucumis sativus])
HSP 1 Score: 1721.8 bits (4458), Expect = 0.0e+00
Identity = 869/1154 (75.30%), Postives = 962/1154 (83.36%), Query Frame = 1
Query: 5 GKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAE 64
GKTIE++GF +V+A EVKEF+ENHTG+GTVS VRISKPK EK+R TS V F+SK+AAE
Sbjct: 2 GKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAE 61
Query: 65 YVVEKAEAEER-LWFGRWYLKARRVERE--REREMRVERLERLEKVRVQLGSVIWKDEMR 124
Y+V K+ EER LWF YLKAR +E+ + V +ER+E V+ LGS+I +MR
Sbjct: 62 YIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKMR 121
Query: 125 VIWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQ 184
VIW GE WSVE+GNG RKLWFYLSY V D+YKMEL FENIL V+ RCP N S FLIQ
Sbjct: 122 VIWEGEKWSVEFGNGFRKLWFYLSYEV--DEYKMELCFENILSVEFRCPLNEPSKFFLIQ 181
Query: 185 LQGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQL 244
LQGAPRIF+K PSSSSS YS +ST FRWIRDVDFTPSSCIGQSF +C ++SP L
Sbjct: 182 LQGAPRIFRKTPSSSSSP---LYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHL 241
Query: 245 PSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYL 304
P FFQTLVGYK Y PF L GS+ S SNLVPI+TPPQ F I YKILFKINAL+QHGYL
Sbjct: 242 PPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYL 301
Query: 305 PGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 364
G LDD+FFRLVD +RF SDYI++ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK
Sbjct: 302 SGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWK 361
Query: 365 ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIY 424
+NISLDD LVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK++
Sbjct: 362 SNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLH 421
Query: 425 SSDLSPRTST-EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 484
S DL+PR+S+ E +RTRVYDR++SVL+NGIVIG KKFEFLAFSASQLRENSFWMFASRE
Sbjct: 422 SIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASRE 481
Query: 485 GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKY 544
GL+AADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPDVEVERKNI Y
Sbjct: 482 GLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMY 541
Query: 545 CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 604
CFSDGIGKIS+ LA+ VAEKCGLI+HTPSAFQIRYAGYKGVVA+DPTSKKKLSLR SMLK
Sbjct: 542 CFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLK 601
Query: 605 YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKA 664
YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGI DDVFVK+QK+A+DQLDSIL DPS+A
Sbjct: 602 YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRA 661
Query: 665 LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTM 724
LEVLELMSPGEMTS+LK++L FY P+EEPFLNMMLRTFRA+KLLDL+TKSRIFVPEGRTM
Sbjct: 662 LEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTM 721
Query: 725 MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 784
+GCLDETRTLEYGQVF+HCSVP RSSE NFVVKGK+VVAKNPCLHPGDVRVLDAVDVK L
Sbjct: 722 IGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKAL 781
Query: 785 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 844
HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYF CWD EL
Sbjct: 782 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLEL--------------------- 841
Query: 845 DVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANA 904
C +++ + I L H E+QEYFANYMVNDG+G IANA
Sbjct: 842 -----TCIKQVKPMNYEPAPTI--------QLNHDVTIEEIQEYFANYMVNDGIGAIANA 901
Query: 905 HTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTY 964
HTVFADK KKAMS ECI+LAKLFSIAVDFPKTGVPANLPR+LRVHEYPDFM+KPNK TY
Sbjct: 902 HTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTY 961
Query: 965 TSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDF 1024
SNGV+GKLFRGVKDVSSD+N E FTREVA K YDPDMEV GFE YL EAFDYK+ YDF
Sbjct: 962 VSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDF 1021
Query: 1025 KLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKS 1084
KLGNLMDYYGI+TEPELVSGN+L+M KSFDKRND+EQI+ AM+SLRKE R WFNE SK
Sbjct: 1022 KLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKF 1081
Query: 1085 IYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKM- 1144
Y+ D +DEYAKASAWY+VTYHP++WG YNEGMQRDHFLSFPWCV++KLIQIKR+KM
Sbjct: 1082 TYD---DIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMT 1113
Query: 1145 --ESSPVSSLIHKF 1152
S PVSSL H F
Sbjct: 1142 LKNSYPVSSLFHNF 1113
BLAST of CmoCh04G022260 vs. NCBI nr
Match:
gi|700196297|gb|KGN51474.1| (hypothetical protein Csa_5G564290 [Cucumis sativus])
HSP 1 Score: 1721.8 bits (4458), Expect = 0.0e+00
Identity = 869/1154 (75.30%), Postives = 962/1154 (83.36%), Query Frame = 1
Query: 5 GKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAE 64
GKTIE++GF +V+A EVKEF+ENHTG+GTVS VRISKPK EK+R TS V F+SK+AAE
Sbjct: 2 GKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAE 61
Query: 65 YVVEKAEAEER-LWFGRWYLKARRVERE--REREMRVERLERLEKVRVQLGSVIWKDEMR 124
Y+V K+ EER LWF YLKAR +E+ + V +ER+E V+ LGS+I +MR
Sbjct: 62 YIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKMR 121
Query: 125 VIWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQ 184
VIW GE WSVE+GNG RKLWFYLSY V D+YKMEL FENIL V+ RCP N S FLIQ
Sbjct: 122 VIWEGEKWSVEFGNGFRKLWFYLSYEV--DEYKMELCFENILSVEFRCPLNEPSKFFLIQ 181
Query: 185 LQGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQL 244
LQGAPRIF+K PSSSSS YS +ST FRWIRDVDFTPSSCIGQSF +C ++SP L
Sbjct: 182 LQGAPRIFRKTPSSSSSP---LYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHL 241
Query: 245 PSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYL 304
P FFQTLVGYK Y PF L GS+ S SNLVPI+TPPQ F I YKILFKINAL+QHGYL
Sbjct: 242 PPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYL 301
Query: 305 PGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 364
G LDD+FFRLVD +RF SDYI++ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK
Sbjct: 302 SGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWK 361
Query: 365 ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIY 424
+NISLDD LVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK++
Sbjct: 362 SNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLH 421
Query: 425 SSDLSPRTST-EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 484
S DL+PR+S+ E +RTRVYDR++SVL+NGIVIG KKFEFLAFSASQLRENSFWMFASRE
Sbjct: 422 SIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASRE 481
Query: 485 GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKY 544
GL+AADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPDVEVERKNI Y
Sbjct: 482 GLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMY 541
Query: 545 CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 604
CFSDGIGKIS+ LA+ VAEKCGLI+HTPSAFQIRYAGYKGVVA+DPTSKKKLSLR SMLK
Sbjct: 542 CFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLK 601
Query: 605 YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKA 664
YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGI DDVFVK+QK+A+DQLDSIL DPS+A
Sbjct: 602 YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRA 661
Query: 665 LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTM 724
LEVLELMSPGEMTS+LK++L FY P+EEPFLNMMLRTFRA+KLLDL+TKSRIFVPEGRTM
Sbjct: 662 LEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTM 721
Query: 725 MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 784
+GCLDETRTLEYGQVF+HCSVP RSSE NFVVKGK+VVAKNPCLHPGDVRVLDAVDVK L
Sbjct: 722 IGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKAL 781
Query: 785 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 844
HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYF CWD EL
Sbjct: 782 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLEL--------------------- 841
Query: 845 DVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANA 904
C +++ + I L H E+QEYFANYMVNDG+G IANA
Sbjct: 842 -----TCIKQVKPMNYEPAPTI--------QLNHDVTIEEIQEYFANYMVNDGIGAIANA 901
Query: 905 HTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTY 964
HTVFADK KKAMS ECI+LAKLFSIAVDFPKTGVPANLPR+LRVHEYPDFM+KPNK TY
Sbjct: 902 HTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTY 961
Query: 965 TSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDF 1024
SNGV+GKLFRGVKDVSSD+N E FTREVA K YDPDMEV GFE YL EAFDYK+ YDF
Sbjct: 962 VSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDF 1021
Query: 1025 KLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKS 1084
KLGNLMDYYGI+TEPELVSGN+L+M KSFDKRND+EQI+ AM+SLRKE R WFNE SK
Sbjct: 1022 KLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKF 1081
Query: 1085 IYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKM- 1144
Y+ D +DEYAKASAWY+VTYHP++WG YNEGMQRDHFLSFPWCV++KLIQIKR+KM
Sbjct: 1082 TYD---DIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMT 1113
Query: 1145 --ESSPVSSLIHKF 1152
S PVSSL H F
Sbjct: 1142 LKNSYPVSSLFHNF 1113
BLAST of CmoCh04G022260 vs. NCBI nr
Match:
gi|307135834|gb|ADN33705.1| (RNA-dependent RNA polymerase [Cucumis melo subsp. melo])
HSP 1 Score: 1666.0 bits (4313), Expect = 0.0e+00
Identity = 855/1176 (72.70%), Postives = 955/1176 (81.21%), Query Frame = 1
Query: 6 KTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAEY 65
KTIE++GFG +V+ EVKEF+ENHTG+GTVS VRISKPK +K+R TS V F+SK+AAEY
Sbjct: 3 KTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAAEY 62
Query: 66 VVEKAEAEER-LWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRVIW 125
+V KA EE+ LWF YLKAR VE++ +ER+E V+ QLGS+I KD+MRVIW
Sbjct: 63 IVAKATTEEKKLWFESSYLKAREVEKKATSGG--PEMERMEDVKGQLGSMISKDKMRVIW 122
Query: 126 RGEDWSVEYGNGMRKLWFYLSYGVE--------DDDYKMELRF-----ENILGVQLRCPH 185
GE W+VE+GNG+RKLWFYLSY V+ ++ +E R +Q+
Sbjct: 123 EGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLIQVSSFF 182
Query: 186 NSSSNLFL-----IQLQ-GAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCI 245
S + FL ++LQ APRIF+K PSSSSS YS ES FRWIRDVDFTPSSCI
Sbjct: 183 LSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSP---LYSNESNSFRWIRDVDFTPSSCI 242
Query: 246 GQSFALCFEVSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIP 305
GQSF LC + SP LP FFQTLVGYK Y PF L GS+F S SNLVPI+TPPQ F I
Sbjct: 243 GQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDIS 302
Query: 306 YKILFKINALVQHGYLPGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWL 365
YKILFKINAL+Q GYL G LDD+FFRLVD +RF DYIE+ALEKLF+LKECCY+PQKWL
Sbjct: 303 YKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWL 362
Query: 366 KQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDID 425
K QYLS+ S QLPWK N+SLDD LVYVHRVQITP KVYF GPEANLSNRVVRRFIDDID
Sbjct: 363 KDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDID 422
Query: 426 NFLRVSFVDEELDKIYSSDLSPRTST-EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFS 485
NFLRVSFVDEELDK++S DL+PR+S+ E RTRVYDR++SVL+NGIVIG KKFEFLAFS
Sbjct: 423 NFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFS 482
Query: 486 ASQLRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENE 545
ASQLRENSFWMFASR+GL+AADIREWMGDFR+IRNVAKYAARLGQSFGSSRKTLCV+E+E
Sbjct: 483 ASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHE 542
Query: 546 IEVIPDVEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAV 605
IEVIPDVEVERKNI YCFSDGIGKIS+ LA+ VA+KCGL HTPSAFQIRYAGYKGVVA+
Sbjct: 543 IEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAI 602
Query: 606 DPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQK 665
DPTS+KKLSLRKSMLKYMSLDTQLDVL WSKYQPCFLNRQVINLLSTLGI DDVFVK+QK
Sbjct: 603 DPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQK 662
Query: 666 KAVDQLDSILRDPSKALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLL 725
+A+DQLDSIL DPS+ALEVLELMSPGEMTS+LK++L FY P+EEPFLNMML TFRA+KLL
Sbjct: 663 EAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLL 722
Query: 726 DLRTKSRIFVPEGRTMMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCL 785
DL+TKSRIFVP GRTMMGCLDETRTLEYGQVF+HCSVPGRSSE NFVVKGKVVVAKNPCL
Sbjct: 723 DLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCL 782
Query: 786 HPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRP 845
HPGDVR+LDA+DVK LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD EL
Sbjct: 783 HPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSEL----- 842
Query: 846 IKPMSYEPAPTIQLDHDVTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEY 905
C +++ S I L H EVQ+Y
Sbjct: 843 ---------------------TCIKQVKPMSYEPAPSI--------QLDHDVTIEEVQKY 902
Query: 906 FANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLR 965
FANYMVNDGLG IANAHTVFADK KKAMSAECI+LAKLFSIAVDFPKTGVPANLPR+LR
Sbjct: 903 FANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLR 962
Query: 966 VHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGF 1025
VHEYPDFM+KP+K TY SNGV+GKLFRGVKDVSSD+N E FT+EVA KCYDPDMEV GF
Sbjct: 963 VHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDMEVDGF 1022
Query: 1026 ENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRS 1085
E YL EAFDYK+ YDFKLGNLMDYYGI+TEPELVSGNIL+M KSFDKRND+EQI+ AM+S
Sbjct: 1023 EKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIAFAMKS 1082
Query: 1086 LRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFP 1145
LRKE R WFNE SK Y + EDDEYA+ASAWY VTYHP++WGRYNEG QRDHFLSFP
Sbjct: 1083 LRKEVRSWFNENESKYTYED--IEDDEYARASAWYCVTYHPDYWGRYNEGTQRDHFLSFP 1137
Query: 1146 WCVSEKLIQIKREKM---ESSPVSSLIHKFGKLSFY 1158
WCV++KLIQIKREKM SSP+SSL + F +S Y
Sbjct: 1143 WCVADKLIQIKREKMSLRNSSPMSSLQYNFDGMSLY 1137
BLAST of CmoCh04G022260 vs. NCBI nr
Match:
gi|659074601|ref|XP_008437692.1| (PREDICTED: probable RNA-dependent RNA polymerase 1, partial [Cucumis melo])
HSP 1 Score: 1538.5 bits (3982), Expect = 0.0e+00
Identity = 762/973 (78.31%), Postives = 836/973 (85.92%), Query Frame = 1
Query: 184 GAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPS 243
GAPRIF+K PSSSSSS YS ES FRWIRDVDFTPSSCIGQSF LC + SP LP
Sbjct: 1 GAPRIFRKTPSSSSSS---LYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPP 60
Query: 244 FFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYLPG 303
FFQTLVGYK Y PF L GS+F S SNLVPI+TPPQ F I YKILFKINAL+Q GYL G
Sbjct: 61 FFQTLVGYKVTYAPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSG 120
Query: 304 SALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKAN 363
LDD+FF+LVD +RF DYIE+ALEKLF+LKECCY+PQKWLK QYLSF S QLPWK N
Sbjct: 121 PTLDDEFFQLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSFYVSNQLPWKPN 180
Query: 364 ISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIYSS 423
ISLDD LVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK++S
Sbjct: 181 ISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSI 240
Query: 424 DLSPRTSTEK--IERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREG 483
DL+PR+S+ + +RTRVYDR++SVL+NGIVIG KKFEFLAFSASQLRENSFWMFASREG
Sbjct: 241 DLAPRSSSPENSTKRTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASREG 300
Query: 484 LNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYC 543
L+AADIREWMGDFR+IRNVAKYA RLGQSFGSSRKTLCVEE+EIEVIPDVEVERKN+ YC
Sbjct: 301 LSAADIREWMGDFRQIRNVAKYATRLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNVMYC 360
Query: 544 FSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKY 603
FSDGIGKIS+ LA+ VAEKCGLISHTPSAFQIRYAGYKGVVA+DPTS+KKLSLRKSMLKY
Sbjct: 361 FSDGIGKISKTLAKKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKY 420
Query: 604 MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKAL 663
MSLDTQLDVL WSKYQPCFLNRQVI+LLST+GI D+VFV++QK+A+DQLDSIL D S+AL
Sbjct: 421 MSLDTQLDVLLWSKYQPCFLNRQVISLLSTIGIGDNVFVRKQKEAIDQLDSILEDQSRAL 480
Query: 664 EVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTMM 723
EVLELMSPGEMTS+LKD+L FY P+EEPFLNMMLRTFRA+KLLDL+TKSRIFVP+GRTMM
Sbjct: 481 EVLELMSPGEMTSILKDLLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPKGRTMM 540
Query: 724 GCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLH 783
GCLDETRTLEYGQVF+HCSVPGRSSE NFVVKGKVVVAKNPCLHPGDVR+LDA+DVK LH
Sbjct: 541 GCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALH 600
Query: 784 HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHD 843
HMVDCVVFPQ GKRPHPNECSGSDLDGDLYFVCWD ELTCI+ +KPMSY+PAPTIQLDHD
Sbjct: 601 HMVDCVVFPQNGKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYKPAPTIQLDHD 660
Query: 844 VTIEVCFQELFTSSANTHFIIFFLIIYIADLIHRFEQIEVQEYFANYMVNDGLGGIANAH 903
VTIE HF Y N DGLG IANAH
Sbjct: 661 VTIE---------EVQKHF---------------------ANYMVN----DGLGAIANAH 720
Query: 904 TVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYT 963
TVFADK PKKAMSAECI+LAKLFSIAVDF KTGVPANLPR+LRVHEYPDFM+KP+K TY
Sbjct: 721 TVFADKNPKKAMSAECIKLAKLFSIAVDFSKTGVPANLPRNLRVHEYPDFMDKPDKPTYV 780
Query: 964 SNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMGFENYLSEAFDYKSMYDFK 1023
SNGV+GKLFRGVKDVSSD+N+ E FTREVA +CYDPDMEV GFE YL EAF YK+ YDFK
Sbjct: 781 SNGVLGKLFRGVKDVSSDVNSFEIFTREVATRCYDPDMEVDGFEKYLREAFHYKTKYDFK 840
Query: 1024 LGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKGSKSI 1083
LGNLMDYYGI+TEPELVSGNIL+M KSFDKRND+EQI+ AM+SLRKE R WFNE +KS
Sbjct: 841 LGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENENKSR 900
Query: 1084 YNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSEKLIQIKREKM-- 1143
Y++ K DEYA+ASAWY VTYHP++WG YNEG QRDHFLSFPWCV++KLI+IKREKM
Sbjct: 901 YDDIK---DEYARASAWYCVTYHPDYWGCYNEGKQRDHFLSFPWCVADKLIEIKREKMSL 933
Query: 1144 -ESSPVSSLIHKF 1152
SSP+SSL+H F
Sbjct: 961 RNSSPMSSLLHNF 933
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| RDR1_ARATH | 0.0e+00 | 54.56 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1 | [more] |
| RDR1_ORYSJ | 1.9e-241 | 57.95 | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 ... | [more] |
| RDR2_ARATH | 5.3e-204 | 38.32 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1 | [more] |
| RDR2_ORYSJ | 1.0e-199 | 39.65 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 ... | [more] |
| RDR6_ARATH | 5.2e-159 | 35.60 | RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0S1YCZ4_CUCSA | 0.0e+00 | 75.52 | RNA-dependent RNA polymerase 1c OS=Cucumis sativus GN=RDR1c PE=2 SV=1 | [more] |
| A0A0A0KRH3_CUCSA | 0.0e+00 | 75.30 | Uncharacterized protein OS=Cucumis sativus GN=Csa_5G564290 PE=4 SV=1 | [more] |
| E5GB63_CUCME | 0.0e+00 | 72.70 | RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo PE=4 SV=1 | [more] |
| B3SND7_GOSHI | 0.0e+00 | 57.63 | RNA-dependent RNA polymerase OS=Gossypium hirsutum PE=4 SV=1 | [more] |
| A0A0B0PJ54_GOSAR | 0.0e+00 | 57.54 | RNA-dependent RNA polymerase 1-like protein OS=Gossypium arboreum GN=F383_00397 ... | [more] |
