BLAST of Cp4.1LG13g06620 vs. Swiss-Prot
Match:
RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)
HSP 1 Score: 1222.6 bits (3162), Expect = 0.0e+00
Identity = 630/1104 (57.07%), Postives = 798/1104 (72.28%), Query Frame = 1
Query: 7 MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
MGKTI++FGFP V+A+EVK+F+E TG GTV +++ +P R +A V+FTS+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPR-VYAIVQFTSERHT 60
Query: 67 EYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEEM 126
++ AA +RL++G YLKA +VE++I A +H + + + +G VS ++
Sbjct: 61 RLIITAAA--ERLYYGRSYLKAFEVEQDIVPKPRASLH----TISGLKMFFGCQVSTKKF 120
Query: 127 KVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGLQ---------------- 186
+W + V +GIG+RKL F S+ +Y++EL +ENI +
Sbjct: 121 LTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 180
Query: 187 -GAPRIFKKA--PLSSSSRLSSEESTGF--RWIRDVDFTPSSCIGQSFALCLELSHGDQL 246
GAP+IF+K P++ + S G +WIR DFT SSCIGQS A CLEL +
Sbjct: 181 IGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 240
Query: 247 PSFFQTLVGYKESYAP-FILHTGSSLSSISN-LVPIITPPQGFHISYKILFQINALLQHG 306
P F + Y E A F++ +GSS SS +N LVP++ PP GF + ++ILF++N L+Q+
Sbjct: 241 PDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNA 300
Query: 307 YLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLP 366
L GPALD +F+RL++ ++ +++ L+KLFHL ECCYEP WL+ +Y + S +LP
Sbjct: 301 CLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLP 360
Query: 367 WKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDK 426
P +SLDDGLVY++RVQ+TP +VYF GPE N+SNRV+RH+ ++NFLRVSFVDE+L+K
Sbjct: 361 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 420
Query: 427 LHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASR 486
+ S+DLSPR+S + RT++YDR+ SVLR+GIVIGDKKFEFLAFS+SQLRENS WMFA
Sbjct: 421 VRSMDLSPRSSTQR--RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 480
Query: 487 KGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKIT 546
++AA IRAWMGDF IRNVAKYAARLGQSF SSR TL V EIEVI DVE+ +
Sbjct: 481 DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 540
Query: 547 YCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSML 606
Y FSDGIGKIS A KVA KCGL +PSAFQIRY GYKGVVA+DP S+KKLSLRKSM
Sbjct: 541 YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 600
Query: 607 KYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSR 666
K+ S +T++DVL+WSKYQPC++NRQ+I LLSTLG+ D VF KKQ+E +D+LD+IL P
Sbjct: 601 KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 660
Query: 667 ALEVLELMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGR 726
A E L LM+PGE T+ILK L+L YKP+ EPFL+MML+ FRA+KLL+LRTK+RIF+ GR
Sbjct: 661 AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 720
Query: 727 TMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVK 786
+MMGCLDETRTLEYGQV V S P R F++ G VVVAKNPCLHPGDVR+L AV+V
Sbjct: 721 SMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNVP 780
Query: 787 ALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRL 846
AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD EL + +PM Y P PT L
Sbjct: 781 ALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQIL 840
Query: 847 DHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPK 906
DHDVT+ EV+EY Y+VND LG IANAHT FAD++P KA + CI+LAK FS AVDFPK
Sbjct: 841 DHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPK 900
Query: 907 TGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVAT 966
TGV A P +L V+EYPDFMEKPDKPTY S V+GKLFR VK+ + + +++ F+ +VA+
Sbjct: 901 TGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVAS 960
Query: 967 KCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKR 1026
K YD DMEVDGFE+Y+ EAF KA YDFKLGNLMDYYGIKTE E++SG I+RM+KSF KR
Sbjct: 961 KSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKR 1020
Query: 1027 NDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYN 1086
D E I A+++LRKE S FN A +E++N E AKASAWY VTYH YWG YN
Sbjct: 1021 RDAESIGRAVRALRKETLSLFN------ASEEEEN---ESAKASAWYHVTYHSSYWGLYN 1080
BLAST of Cp4.1LG13g06620 vs. Swiss-Prot
Match:
RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)
HSP 1 Score: 921.4 bits (2380), Expect = 9.4e-267
Identity = 459/734 (62.53%), Postives = 570/734 (77.66%), Query Frame = 1
Query: 367 VYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLSPRTSAENDL-RTRVYD 426
VYF GPE N+SNRVVR+F D++NFLR+SFVDE+ +KL + DLSPR+++ +D RT +Y
Sbjct: 9 VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68
Query: 427 RVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVA 486
RVLSVL +GI IG K FEFLAFS+SQLR+NS WMFASR+GL+A+DIR WMGDFR IRNVA
Sbjct: 69 RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128
Query: 487 KYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKC 546
KYAARLGQSF SS TL V+++E+E ISD++ N + FSDGIGKIS A +VA KC
Sbjct: 129 KYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKC 188
Query: 547 GLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFL 606
L PSAFQIRY GYKGVVA+DPTS KLSLRKSMLK+ S + VDVL++SKYQP FL
Sbjct: 189 NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248
Query: 607 NRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLL 666
NRQ+I LLSTLG++D VF +KQ+EA++QL+ ++ DP A+E +ELM GE+T+ +KELLL
Sbjct: 249 NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308
Query: 667 L-YKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCS 726
Y+P++EP+L+M+L+TFRA+KLL+L+TKSRI +PKGR MMGCLDETRTL+YGQVF+ +
Sbjct: 309 CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368
Query: 727 LPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHMVDCVVFPQKGERPHPNE 786
G + F V GKVV+AKNPCLHPGD+R+L AVDV LHHM +CVVFPQ+G RPHPNE
Sbjct: 369 -SGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNE 428
Query: 787 CSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGL 846
CSGSDLDGD+YFV WDP L + V PM Y PAPT LDHDVT+ EV+EY Y+VN+ L
Sbjct: 429 CSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESL 488
Query: 847 GGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEK 906
G IANAH VFAD++ KA ++ CI+LAKLFSIAVDFPKTGVPA P L V+EYPDFMEK
Sbjct: 489 GMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEK 548
Query: 907 PDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEY 966
DK TY S GV+GKL+R +K ++ F+REVA + YD DM VDG+EDY++EA
Sbjct: 549 LDKVTYESKGVIGKLYREIK---KHTPHIKHFTREVARRSYDTDMIVDGYEDYITEAMAL 608
Query: 967 KARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFN 1026
K YDFKLGNLMD+YGIK+E E+ISG IL+MAK+F K++D + I LA++SLRKEARS F+
Sbjct: 609 KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFS 668
Query: 1027 EKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQI 1086
E S D D AKASAWY VTYHP++WG YNEG +R HF+SFPWC+ +KL++I
Sbjct: 669 E---MSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLLRI 728
Query: 1087 KREKTCLVNFSPVL 1099
K+ + + P L
Sbjct: 729 KQRRKFVRKMQPEL 732
BLAST of Cp4.1LG13g06620 vs. Swiss-Prot
Match:
RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)
HSP 1 Score: 749.2 bits (1933), Expect = 6.4e-215
Identity = 455/1140 (39.91%), Postives = 652/1140 (57.19%), Query Frame = 1
Query: 3 TTNDMGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTS 62
TTN T++I P + ADE+ F+E H G+ TV + I D FA V+FT+
Sbjct: 6 TTNR--STVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTT 65
Query: 63 KLGGEYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVS 122
L + +++ +L F + L+ + +I R +R++++ + G S
Sbjct: 66 -LEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDI----IPRPVDPRKRLDDIVLTVGFPES 125
Query: 123 KEEMKVIWKGEKWS-VEYGIGV--RKLGFYLSYEGVEYKMELCFENI------------- 182
E K EKW V I R++ F++ G YK+E+ FE+I
Sbjct: 126 DE--KRFCALEKWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDAS 185
Query: 183 ------LGLQGAPRIFKKAPLSSSSRLSSE------ESTGFRWIRDVDFTPSSCIGQSFA 242
L L+ P++FK+ + +++ S+ E F WIR DF+ S IG S
Sbjct: 186 EIDAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTC 245
Query: 243 LCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPP-QGFHISYKIL 302
CLE+ +G + F L Y+E G + +S + +VP++ G Y+IL
Sbjct: 246 FCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEIL 305
Query: 303 FQINALLQHGYLP-GPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQ 362
FQ+NAL+ + A D E +++ + V L KL CY+P ++K Q
Sbjct: 306 FQLNALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQ 365
Query: 363 YLSFYSS-KQLPWKPNVSL-DDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDN 422
S K P L + ++ R +TP+K+Y GPE +N VV++F + V +
Sbjct: 366 MQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSD 425
Query: 423 FLRVSFVDEELDKLHSIDLSPRTSAE---NDLRTRVYDRVLSVLRNGIVIGDKKFEFLAF 482
F+RV+FV+E+ KL + LS + RT +Y+RVLS+L GI +G K+FEFLAF
Sbjct: 426 FMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAF 485
Query: 483 SASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQH 542
SASQLR NS WMFAS + + A DIR WMG FR+IR+++K AAR+GQ F +SR+TL V
Sbjct: 486 SASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQ 545
Query: 543 EIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVA 602
++E I D+EV T+ YCFSDGIGKIS A++VA+KCGL SH PSAFQIRY GYKGV+A
Sbjct: 546 DVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIA 605
Query: 603 IDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQ 662
+D +S +KLSLR SMLK+ S + ++V W++ PCFLNR++I LLSTLGI+D +F Q
Sbjct: 606 VDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQ 665
Query: 663 KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAK 722
+ L ++LED AL VL+ +S ++L ++LL Y P+ EP+L+MMLR ++
Sbjct: 666 AVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQ 725
Query: 723 LLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPG------------RSSESNF 782
L +L+++ RI VPKGR ++GC+DE LEYGQV+V +L + E
Sbjct: 726 LSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETS 785
Query: 783 VVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHM--VDCVVFPQKGERPHPNECSGSDLDG 842
VV GKVVV KNPCLHPGD+R+LDA+ +DC++FPQKGERPHPNECSG DLDG
Sbjct: 786 VVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDG 845
Query: 843 DLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHT 902
D +FV WD ++ + PM Y + +DHDVT+ E+ ++ V YM++D LG I+ AH
Sbjct: 846 DQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHL 905
Query: 903 VFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVS 962
V AD+ P+KA + +C++LA L S AVDF KTG PA P+ L+ RE+PDF+E+ +KPTY+S
Sbjct: 906 VHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYIS 965
Query: 963 NGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKL 1022
V GKL+R VK S + + + T YD +E GFE ++ A ++ Y KL
Sbjct: 966 ESVFGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKL 1025
Query: 1023 GNLMDYYGIKTEPELISGNI----LRMAKSFDKRNDM-EQISLAMKSLRKEARSWFNEKG 1082
+LM YYG E E+++G + + +A+ + DM ++I+L++K L KEA WF
Sbjct: 1026 TSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF---- 1085
Query: 1083 SKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKRE 1088
KS DE K ASAWY VTY+P N ++ FLSFPW V D L+ IK E
Sbjct: 1086 EKSCEDEQQKK----KLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAE 1116
BLAST of Cp4.1LG13g06620 vs. Swiss-Prot
Match:
RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)
HSP 1 Score: 728.4 bits (1879), Expect = 1.2e-208
Identity = 411/994 (41.35%), Postives = 593/994 (59.66%), Query Frame = 1
Query: 142 GVRKLGFYLSYEGVEYKMELCFEN---------------ILGLQGAPRIFK--KAPLSSS 201
G R++ YL ++ YK+E+ FE+ +L L APRI P +S
Sbjct: 140 GKRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTLDGMGAILLQLNYAPRIHTAISGPAVNS 199
Query: 202 SRLSS-----EESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSFFQTLVGYKESY 261
+ +E F W+R +DFTP+ G+ L L+L + ++L + +
Sbjct: 200 RFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLP-FSGNL 259
Query: 262 APFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGPALDNEFFRLVD 321
+++ + + SN+VP++ P+ + + Y++LF++N+L+ G + ++ + F+ +
Sbjct: 260 GELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQ 319
Query: 322 PSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNVSLDDG---LVY 381
D +K+ L+ CY P ++++Q+ S S + N +G L+
Sbjct: 320 --ELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLS-NEGEGEGERKLMK 379
Query: 382 VHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLSPRTSA- 441
+RV ITP+K++ GPE ++N VV+H +F+RV+FVDE+ KL S +S R
Sbjct: 380 CYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQG 439
Query: 442 --ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIRA 501
+T +Y R+LS+L+ G IG K FEFLAFSASQLR NS WMFAS L+A IR
Sbjct: 440 FFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRR 499
Query: 502 WMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDGIGKI 561
WMG F IR+V+K AAR+GQ F SSR+T V + ++EVI D+E+ T+ Y FSDGIGKI
Sbjct: 500 WMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKI 559
Query: 562 SGTLAEKVAEKCGLI-SHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLDTQV 621
S A++VA GL ++ PSAFQIRY GYKGV+AIDP S+ LSLR SM K+ S +
Sbjct: 560 SLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRML 619
Query: 622 DVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLELMS 681
++ SWSK QPC++NR++I+LLSTLGI+D +FV Q++ + + + +L + AL VL +
Sbjct: 620 NITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLG 679
Query: 682 PGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDETR 741
E + +K LL Y+P+ EP+L+M+L+ + +L D+RT+ +I VPKGR ++GCLDET
Sbjct: 680 GSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETG 739
Query: 742 TLEYGQVFVHCSLPGR----SSESNF--------VVKGKVVVAKNPCLHPGDVRLLDAVD 801
LEYGQV++ + + S++S F V GKV + KNPCLHPGD+R+L+A+
Sbjct: 740 VLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIY 799
Query: 802 VKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTM 861
L MVDC+VFPQ+GERPHPNECSG DLDGDLYF+ WD +L K PM Y
Sbjct: 800 DPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPR 859
Query: 862 RLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDF 921
+DH VT+ E+Q++ V YM+ND LG I+ AH + AD+ P KA + EC++LA L S+AVDF
Sbjct: 860 IMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDF 919
Query: 922 PKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFR---GVKDVSSDVNTVEIFS 981
KTG PA P LR REYPDFME+ +KP Y+SNGVLGKL+R G + S D + S
Sbjct: 920 AKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSS 979
Query: 982 REVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAK 1041
+ + YDPD+EV G +++L A EY Y+ KL LM+YY + E E+++GNI R
Sbjct: 980 AQ-PSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNI-RNKM 1039
Query: 1042 SFDKRND------MEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRV 1086
+ KR++ ++I A+ +L +EAR W S +ED ++ ASAWYRV
Sbjct: 1040 LYLKRDNKRYFEMKDRIVAAVDALHREARGWL----LSSRKEEDASR-----MASAWYRV 1099
BLAST of Cp4.1LG13g06620 vs. Swiss-Prot
Match:
SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1)
HSP 1 Score: 575.1 bits (1481), Expect = 1.7e-162
Identity = 366/943 (38.81%), Postives = 521/943 (55.25%), Query Frame = 1
Query: 197 WIRDVDFTPSSCIGQSFALCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLS----- 256
WIR D TPS IG+ +S + + Y I+ G
Sbjct: 270 WIRTTDITPSGAIGRCGVY--RISFSARFWPKMDRALDYMRERRVAIVDCGGGWGPRRGL 329
Query: 257 SISNLVPIITPPQGFH--------ISYKILFQINALLQHGYLPGPALDNEFFRLVDPSRF 316
++ + + P Q + + +LF +NAL+ G + L EFF L+ S
Sbjct: 330 TVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEE 389
Query: 317 RSDYV---EYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRV 376
+ ++ DK F + + C +K L + + K L K + D V R+
Sbjct: 390 NVNVAALRDFWGDK-FPVFDACGRLKKALNRVARN---PKLLCSK----VGDDHAEVRRL 449
Query: 377 QITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLSPRTSA-ENDL 436
ITPT+ Y PE SNRV+RH+ + D FLRV+F+DE + L++ L+ T+ DL
Sbjct: 450 VITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDL 509
Query: 437 -------RTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIR 496
+T VY RV +L G + +K+ FLAFS++QLR+ S W FA + + IR
Sbjct: 510 MSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIR 569
Query: 497 AWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDGIGK 556
WMG F +NVAK+AAR+GQ F S+ T+ + E++ D V Y FSDGIGK
Sbjct: 570 KWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNE---YIFSDGIGK 629
Query: 557 ISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAI--DPTSTKKLSLRKSMLKYTSLDT 616
I+ LA +VAE+ L + PSA+QIR+AG+KGV+A+ +L LR SM K+ S
Sbjct: 630 ITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHL 689
Query: 617 QVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLEL 676
++V+SW+K+QP FLNRQ+I LLS+L + D +F + Q+ + L++IL D A EVL
Sbjct: 690 VLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTT 749
Query: 677 MSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDE 736
+ + L ++P EP L ML R+A+L DL K+RIFVPKGR +MGCLDE
Sbjct: 750 SCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDE 809
Query: 737 TRTLEYGQVFVHCSLPGRSS-------------ESNFVVKGKVVVAKNPCLHPGDVRLLD 796
LE GQ F+ ++P +S ++ V+ G VV+AKNPCLHPGDVR+L+
Sbjct: 810 LGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILE 869
Query: 797 AVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVK----PMS 856
AVDV LHH+VDC+VFPQKGERPH NE SGSDLDGDLYFV WD +L I P K PM
Sbjct: 870 AVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKL--IPPGKKSWNPMD 929
Query: 857 YEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKL 916
Y P +L V+ ++ ++ +K M+++ LG I NAH V AD AM +CI LA+L
Sbjct: 930 YSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAEL 989
Query: 917 FSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTV 976
+ AVDFPKTG A P +L+ + YPDFM K D +Y S +LG+L+R +++ S+
Sbjct: 990 AATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNG---- 1049
Query: 977 EIFSREVATK---CYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISG 1036
++ S+EV T YD D+EV G D+L+ A++ K YD +L L+ Y ++TE EL++G
Sbjct: 1050 DVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTG 1109
Query: 1037 NILRMAKSFDKRND--MEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEY-AKASA 1086
+I + K+ K+ +++ A +LRKE +S F S DD K+ Y KASA
Sbjct: 1110 HITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASA 1169
BLAST of Cp4.1LG13g06620 vs. TrEMBL
Match:
A0A0S1YCZ4_CUCSA (RNA-dependent RNA polymerase 1c OS=Cucumis sativus GN=RDR1c PE=2 SV=1)
HSP 1 Score: 1785.0 bits (4622), Expect = 0.0e+00
Identity = 889/1109 (80.16%), Postives = 964/1109 (86.93%), Query Frame = 1
Query: 7 MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
MGKTIEI+GF QVTADEVKEF+ENHTGDGTV TVRISKP DEKARFT TV F SKL
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 67 EYVVAQAAAEKR-LWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEE 126
EY+VA++ E+R LWF S YLKAR++E+ + V E+ERME+V G+++S +
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVL-EMERMEDVKGHLGSMISNGK 120
Query: 127 MKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILG----------------- 186
M+VIW+GEKWSVE+G G RKL FYLSYE EYKMELCFENIL
Sbjct: 121 MRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ 180
Query: 187 LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSF 246
LQGAPRIF+K P SSSS L S +ST FRWIRDVDFTPSSCIGQSF +CL+LS LP F
Sbjct: 181 LQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPF 240
Query: 247 FQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGP 306
FQTLVGYK +YAPFILH GSSL S SNLVPIITPPQ F ISYKILF+INALLQHGYL GP
Sbjct: 241 FQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGP 300
Query: 307 ALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNV 366
LD+EFFRLVD SRF SDY+E+AL+KLF+LKECCY+PQKWLK QYLS+Y+S QLPWK N+
Sbjct: 301 TLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNI 360
Query: 367 SLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSID 426
SLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FI D+DNFLRVSFVDEELDKLHSID
Sbjct: 361 SLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSID 420
Query: 427 LSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLS 486
L+PR+S+ EN RTRVYDRV+S+L+NGIVIG+KKFEFLAFSASQLRENS WMFASR+GLS
Sbjct: 421 LAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLS 480
Query: 487 AADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFS 546
AADIR WMGDF IRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE I YCFS
Sbjct: 481 AADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFS 540
Query: 547 DGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTS 606
DGIGKIS TLA+KVAEKCGL SHTPSAFQIRYAGYKGVVAIDPTS KKLSLRKSMLKY S
Sbjct: 541 DGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMS 600
Query: 607 LDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEV 666
LDTQ+DVL WSKYQPCFLNRQVINLLSTLGI+D VFVKKQKEAIDQLDSILEDPSRALEV
Sbjct: 601 LDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEV 660
Query: 667 LELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGC 726
LELMSPGEMTSILKELL Y PN+EPFLNMMLRTFRA KLLDLRTKSRIFVPKGRTMMGC
Sbjct: 661 LELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGC 720
Query: 727 LDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHM 786
LDET+TLEYGQVFVHCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVRLLDA+DVKALHHM
Sbjct: 721 LDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHM 780
Query: 787 VDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVT 846
VDCVVFPQKG+RPHPNECSGSDLDGDLYFV WD ELT IK VKPMSY+PAPT++LDHDVT
Sbjct: 781 VDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVT 840
Query: 847 MGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPA 906
+ EVQEY YMVNDGLG IANAHTVFAD+ KKAM+AECIKLAKLFSIAVDFPKTGVPA
Sbjct: 841 IEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPA 900
Query: 907 NFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDP 966
N P NLRV EYPDFM+KP+K TYVSNGVLGKLFRGVKDVSSDV+ EIF+REVATKCYDP
Sbjct: 901 NLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDP 960
Query: 967 DMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQ 1026
DMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGNIL+MAKSFDKR D+EQ
Sbjct: 961 DMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQ 1020
Query: 1027 ISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQR 1086
I+ AMKSLRKE R WFNE SKS YD+ +EYA+ASAWY VTYHPDYWG YNEG +R
Sbjct: 1021 IAFAMKSLRKEVRFWFNENESKSTYDD---IQDEYARASAWYCVTYHPDYWGCYNEGTKR 1080
Query: 1087 DHFLSFPWCVSDKLIQIKREKTCLVNFSP 1097
DHFLSFPWCV+DKLIQIKREK + N SP
Sbjct: 1081 DHFLSFPWCVADKLIQIKREKMSMRNSSP 1105
BLAST of Cp4.1LG13g06620 vs. TrEMBL
Match:
A0A0A0KRH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G564290 PE=4 SV=1)
HSP 1 Score: 1780.8 bits (4611), Expect = 0.0e+00
Identity = 888/1112 (79.86%), Postives = 965/1112 (86.78%), Query Frame = 1
Query: 7 MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
MGKTIEI+GF QVTADEVKEF+ENHTGDGTV TVRISKP DEKARFT TV F SKL
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 67 EYVVAQAAAEKR-LWFGSLYLKARKVEREIKTTAAARVHG--ELERMENVNVQWGNLVSK 126
EY+VA++ E+R LWF S YLKAR++E K A G E+ERME+V G+++S
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELE---KAVVAKETKGVLEMERMEDVKGHLGSMISN 120
Query: 127 EEMKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILG--------------- 186
+M+VIW+GEKWSVE+G G RKL FYLSYE EYKMELCFENIL
Sbjct: 121 GKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFL 180
Query: 187 --LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLP 246
LQGAPRIF+K P SSSS L S +ST FRWIRDVDFTPSSCIGQSF +CL+LS LP
Sbjct: 181 IQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLP 240
Query: 247 SFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLP 306
FFQTLVGYK +YAPFILH GSSL S SNLVPIITPPQ F ISYKILF+INALLQHGYL
Sbjct: 241 PFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLS 300
Query: 307 GPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKP 366
GP LD+EFFRLVD SRF SDY+++AL+KLF+LKECCY+PQKWLK QYLS+Y+S QLPWK
Sbjct: 301 GPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKS 360
Query: 367 NVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHS 426
N+SLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FI D+DNFLRVSFVDEELDKLHS
Sbjct: 361 NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS 420
Query: 427 IDLSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKG 486
IDL+PR+S+ EN RTRVYDRV+SVL+NGIVIG+KKFEFLAFSASQLRENS WMFASR+G
Sbjct: 421 IDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREG 480
Query: 487 LSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYC 546
LSAADIR WMGDF IRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE I YC
Sbjct: 481 LSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYC 540
Query: 547 FSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKY 606
FSDGIGKIS TLA+KVAEKCGLI+HTPSAFQIRYAGYKGVVAIDPTS KKLSLR SMLKY
Sbjct: 541 FSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKY 600
Query: 607 TSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRAL 666
SLDTQ+DVLSWSKYQPCFLNRQVINLLSTLGI D VFVKKQKEAIDQLDSILEDPSRAL
Sbjct: 601 MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRAL 660
Query: 667 EVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMM 726
EVLELMSPGEMTSILKELL Y PNEEPFLNMMLRTFRA KLLDL+TKSRIFVP+GRTM+
Sbjct: 661 EVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMI 720
Query: 727 GCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALH 786
GCLDETRTLEYGQVFVHCS+P RSSE NFVVKGK+VVAKNPCLHPGDVR+LDAVDVKALH
Sbjct: 721 GCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALH 780
Query: 787 HMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHD 846
HMVDCVVFPQKG+RPHPNECSGSDLDGDLYF WD ELT IK VKPM+YEPAPT++L+HD
Sbjct: 781 HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHD 840
Query: 847 VTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGV 906
VT+ E+QEY YMVNDG+G IANAHTVFAD+ KKAM+ ECIKLAKLFSIAVDFPKTGV
Sbjct: 841 VTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGV 900
Query: 907 PANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCY 966
PAN P NLRV EYPDFM+KP+KPTYVSNGVLGKLFRGVKDVSSDVNT EIF+REVATK Y
Sbjct: 901 PANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYY 960
Query: 967 DPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDM 1026
DPDMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGN+L+MAKSFDKRND+
Sbjct: 961 DPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDL 1020
Query: 1027 EQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGM 1086
EQI+ AMKSLRKE RSWFNE SK YD+ ++EYAKASAWY VTYHPDYWG YNEGM
Sbjct: 1021 EQITFAMKSLRKEVRSWFNENESKFTYDD---IEDEYAKASAWYYVTYHPDYWGCYNEGM 1080
Query: 1087 QRDHFLSFPWCVSDKLIQIKREKTCLVNFSPV 1098
QRDHFLSFPWCV+DKLIQIKR+K L N PV
Sbjct: 1081 QRDHFLSFPWCVADKLIQIKRDKMTLKNSYPV 1106
BLAST of Cp4.1LG13g06620 vs. TrEMBL
Match:
E5GB63_CUCME (RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo PE=4 SV=1)
HSP 1 Score: 1602.4 bits (4148), Expect = 0.0e+00
Identity = 794/956 (83.05%), Postives = 851/956 (89.02%), Query Frame = 1
Query: 148 FYLSYEGVEYKMELCFENILGLQ-GAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPS 207
F+LS+ + L F ++L LQ APRIF+K P SSSS L S ES FRWIRDVDFTPS
Sbjct: 179 FFLSF----FSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPS 238
Query: 208 SCIGQSFALCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGF 267
SCIGQSF LCL+ S LP FFQTLVGYK +Y PFIL GSS S SNLVPIITPPQ F
Sbjct: 239 SCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAF 298
Query: 268 HISYKILFQINALLQHGYLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQ 327
ISYKILF+INALLQ GYL GP LD+EFFRLVD SRF DY+E+AL+KLF+LKECCY+PQ
Sbjct: 299 DISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQ 358
Query: 328 KWLKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFID 387
KWLK QYLS+Y S QLPWKPNVSLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FID
Sbjct: 359 KWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFID 418
Query: 388 DVDNFLRVSFVDEELDKLHSIDLSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFL 447
D+DNFLRVSFVDEELDKLHSIDL+PR+S+ EN+ RTRVYDRV+SVL+NGIVIGDKKFEFL
Sbjct: 419 DIDNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFL 478
Query: 448 AFSASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVE 507
AFSASQLRENS WMFASRKGLSAADIR WMGDFRQIRNVAKYAARLGQSFGSSR+TLCV+
Sbjct: 479 AFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVK 538
Query: 508 QHEIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGV 567
+HEIEVI DVEVE I YCFSDGIGKIS TLA+KVA+KCGL HTPSAFQIRYAGYKGV
Sbjct: 539 EHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGV 598
Query: 568 VAIDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVK 627
VAIDPTS KKLSLRKSMLKY SLDTQ+DVL WSKYQPCFLNRQVINLLSTLGI D VFVK
Sbjct: 599 VAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVK 658
Query: 628 KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAA 687
KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELL Y PNEEPFLNMML TFRA
Sbjct: 659 KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRAN 718
Query: 688 KLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKN 747
KLLDL+TKSRIFVP+GRTMMGCLDETRTLEYGQVFVHCS+PGRSSE NFVVKGKVVVAKN
Sbjct: 719 KLLDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKN 778
Query: 748 PCLHPGDVRLLDAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTR 807
PCLHPGDVRLLDA+DVKALHHMVDCVVFPQKG+RPHPNECSGSDLDGDLYFV WD ELT
Sbjct: 779 PCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTC 838
Query: 808 IKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTA 867
IK VKPMSYEPAP+++LDHDVT+ EVQ+Y YMVNDGLG IANAHTVFAD+ KKAM+A
Sbjct: 839 IKQVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSA 898
Query: 868 ECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKD 927
ECIKLAKLFSIAVDFPKTGVPAN P NLRV EYPDFM+KPDKPTYVSNGVLGKLFRGVKD
Sbjct: 899 ECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKD 958
Query: 928 VSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEP 987
VSSDVNT EIF++EVATKCYDPDMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEP
Sbjct: 959 VSSDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEP 1018
Query: 988 ELISGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKA 1047
EL+SGNIL+MAKSFDKRND+EQI+ AMKSLRKE RSWFNE SK Y +D +D+EYA+A
Sbjct: 1019 ELVSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTY--EDIEDDEYARA 1078
Query: 1048 SAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKTCLVNFSPVLTFQ 1102
SAWY VTYHPDYWGRYNEG QRDHFLSFPWCV+DKLIQIKREK L N SP+ + Q
Sbjct: 1079 SAWYCVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQ 1128
BLAST of Cp4.1LG13g06620 vs. TrEMBL
Match:
B9HJH7_POPTR (RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s13550g PE=4 SV=1)
HSP 1 Score: 1317.8 bits (3409), Expect = 0.0e+00
Identity = 663/1130 (58.67%), Postives = 826/1130 (73.10%), Query Frame = 1
Query: 7 MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
M KT+++ GFP+ TA V+ F+E+HTG GTV ++I + AR +A V+FT+
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGAR-KYAIVQFTTTRAA 60
Query: 67 EYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEEM 126
E +++ A RLW+G YL AR ++R+I + +H ME+V + +G SKE+
Sbjct: 61 EQIIS--LANPRLWYGHSYLNARPMDRDIIPQPRSFLH----TMESVTLHFGYQTSKEKF 120
Query: 127 KVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENI-----------------LGL 186
+W G SV +G+G+RKL F+LS+ EYK+ L FENI + L
Sbjct: 121 SAVWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQL 180
Query: 187 QGAPRIFKKAPLSSSSRLSSEESTGFR------WIRDVDFTPSSCIGQSFALCLELSHGD 246
GAPRI+++ SSS+ FR W+R DFTPS IG S +LCLEL +
Sbjct: 181 YGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHL 240
Query: 247 QLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHG 306
QLP+F + YKE+ F+L +G + S +LVPI+ P G ++ Y ILF++N L+Q+G
Sbjct: 241 QLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNG 300
Query: 307 YLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLP 366
L G LD+ F+RLVDP+R +EYAL+KL+HLKECCYEP KW +QY + +S P
Sbjct: 301 CLAGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPP 360
Query: 367 WKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDK 426
P +SLD GLVYV++VQITP KV+F GPE N+SNRV+R + +D+DNFLRVSFVDEEL+K
Sbjct: 361 RSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEK 420
Query: 427 LHSIDLSPRTSAENDLR-TRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFAS 486
+HS D+SPRTS+ N+LR T +Y+R+LS L+NGIVIGDKKFEFLAFS+SQLRENSCWMFAS
Sbjct: 421 IHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFAS 480
Query: 487 RKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKI 546
R GL+AADIRAWMG F +IRNVA+YAARLGQSFGSS TL V HEIE+I D+EV
Sbjct: 481 RLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGT 540
Query: 547 TYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSM 606
Y FSDGIGKIS A KVA KCG TPSAFQIRYAGYKGVVA+DPTS+KKLSLR+SM
Sbjct: 541 RYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSM 600
Query: 607 LKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPS 666
KY S +T++DVL+ SKYQPCFLNRQ+I LLSTLG+ D F +KQ+EA+DQLD++L DP
Sbjct: 601 FKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPL 660
Query: 667 RALEVLELMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKG 726
RA E LELMSPGE T+ILKE+LL Y+P+ EPFL+MML+TFRA+KLL+LRTK+RIF+P G
Sbjct: 661 RAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 720
Query: 727 RTMMGCLDETRTLEYGQVFVHCS-------------LPGRSSESNFVVKGKVVVAKNPCL 786
R+MMGCLDETRTLE+GQVFV S R +++KG VVVAKNPCL
Sbjct: 721 RSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCL 780
Query: 787 HPGDVRLLDAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKP 846
HPGD+R+L AVDV ALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPEL +
Sbjct: 781 HPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQ 840
Query: 847 VKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECI 906
+ PM Y P P ++LDHDVT+ EV+EY Y+VND LG IANAHT AD++ KAM+ C+
Sbjct: 841 ISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCV 900
Query: 907 KLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSS 966
+LA+ FSIAVDFPKTGVPA P NLR REYPDFMEKPDKP+Y S V+GKLFR VKD++
Sbjct: 901 ELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAP 960
Query: 967 DVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELI 1026
+++ F+ +VA +CYDPDMEVDGFEDY+ +AF YK+ YD+KLGNLM+YYGIKTE EL+
Sbjct: 961 RTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELL 1020
Query: 1027 SGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAW 1086
SG+ ++M+KSF K+ D E I +A++SL+KEARSWFNEKGS D D+ AKASAW
Sbjct: 1021 SGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGS----GLDSQADDVDAKASAW 1080
Query: 1087 YRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKTCLVNFSPVL 1099
Y VTYH +YWG YNEGM RDHFLSFPWCV DKLIQIKR + + S +L
Sbjct: 1081 YHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLIL 1119
BLAST of Cp4.1LG13g06620 vs. TrEMBL
Match:
F6HFC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05870 PE=4 SV=1)
HSP 1 Score: 1303.5 bits (3372), Expect = 0.0e+00
Identity = 664/1114 (59.61%), Postives = 829/1114 (74.42%), Query Frame = 1
Query: 7 MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
MGKTI+++G P+ V+A+E+KEF+E +TG+GT+ + I +P + T A V+FTS
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS-MTHAKVQFTSLRLA 60
Query: 67 EYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEEM 126
E +++ A K+LW+G YLKAR+++ +I +H M+ + + +G +S E
Sbjct: 61 ELIISLA---KQLWYGGNYLKAREMDLDIIPKPRTFLHS----MDRITLHFGYQMSNERF 120
Query: 127 KVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGLQ---------------- 186
V+WK SV++G G+RK F+LS+ EYK+EL ENI +Q
Sbjct: 121 CVLWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQL 180
Query: 187 -GAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSFF 246
AP+I++K S+ +E+ +W+R++DFTPS IGQS ALCLEL HG QLP+F
Sbjct: 181 LDAPQIYEK---DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFC 240
Query: 247 QTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGPA 306
+ YKE+ FIL +G+S S +LVPI+ PPQG ++ +KILF+IN L+Q+G L GP
Sbjct: 241 ENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPT 300
Query: 307 LDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNVS 366
LD FFR VDP R ++E+AL+KL++L+ECCYEP +WL +QY + Y SKQ+ P +S
Sbjct: 301 LDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRT-YISKQVAGSPAIS 360
Query: 367 LDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDL 426
LD GLVYV RVQITP KVYF GPE N+SNRV+R++ +D+DNFLRVSF+DE +K+HS +
Sbjct: 361 LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVI 420
Query: 427 SPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAA 486
SPR S E RT VY R+LS+L+NGIVIGDKKF+FLA S+SQLR+NS WMFASR GL+AA
Sbjct: 421 SPRMSNEGR-RTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAA 480
Query: 487 DIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDG 546
DIR+ MGDF QIRNVAKYAARLGQSF SS+ TL V +HEIE+I D+E + TY FSDG
Sbjct: 481 DIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDG 540
Query: 547 IGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLD 606
IGKIS LA +VA KCG + TPSAFQIRY GYKGVVA+DPTS++KLSLRKSM KY S +
Sbjct: 541 IGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESEN 600
Query: 607 TQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLE 666
T +DVLSWSKY+PCFLNRQ+I LLSTLG+KD VF KKQ+EA+DQLD+IL+DP RA E LE
Sbjct: 601 TNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALE 660
Query: 667 LMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCL 726
LMSPGE T+ILKE+L+ YKP+ EPFL+MML+TFRAAKLL+LRTK+RIFVP GR+MMGCL
Sbjct: 661 LMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCL 720
Query: 727 DETRTLEYGQVFVHCSLPGR--------------SSESNFVVKGKVVVAKNPCLHPGDVR 786
DETRTLEYG+VFV S G S NF+++GKVVVAKNPCLHPGDVR
Sbjct: 721 DETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVR 780
Query: 787 LLDAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSY 846
+L AVDV ALHHMVDCVVFPQKG RPHP+ECSGSDLDGD+YFV WD +L + + PM Y
Sbjct: 781 ILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDY 840
Query: 847 EPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLF 906
PAPT LDHDV + EV+EY Y+ ND LG IANAHTVFAD++ KA+ C +LAKLF
Sbjct: 841 TPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLF 900
Query: 907 SIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVE 966
SIA++FPKTGVPA P +L V+EYPDFMEK +KPTY S V+GKLFR VKDV+ V
Sbjct: 901 SIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVR 960
Query: 967 IFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILR 1026
F+R+VA + YD DMEVDGFEDY+ +AF YK++YDFKLG+LMD GI+TE E++SG+I++
Sbjct: 961 SFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMK 1020
Query: 1027 MAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYH 1086
M+KSFDKR D E I+LA++SLRKEAR+WFN+ GS + DD YA ASAWY VTYH
Sbjct: 1021 MSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADD----VYAIASAWYHVTYH 1080
Query: 1087 PDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREK 1089
P YWG YNEGM DHFLSFPWCV DKLIQIKR+K
Sbjct: 1081 PYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDK 1097
BLAST of Cp4.1LG13g06620 vs. TAIR10
Match:
AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)
HSP 1 Score: 1222.6 bits (3162), Expect = 0.0e+00
Identity = 630/1104 (57.07%), Postives = 798/1104 (72.28%), Query Frame = 1
Query: 7 MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
MGKTI++FGFP V+A+EVK+F+E TG GTV +++ +P R +A V+FTS+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPR-VYAIVQFTSERHT 60
Query: 67 EYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEEM 126
++ AA +RL++G YLKA +VE++I A +H + + + +G VS ++
Sbjct: 61 RLIITAAA--ERLYYGRSYLKAFEVEQDIVPKPRASLH----TISGLKMFFGCQVSTKKF 120
Query: 127 KVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGLQ---------------- 186
+W + V +GIG+RKL F S+ +Y++EL +ENI +
Sbjct: 121 LTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 180
Query: 187 -GAPRIFKKA--PLSSSSRLSSEESTGF--RWIRDVDFTPSSCIGQSFALCLELSHGDQL 246
GAP+IF+K P++ + S G +WIR DFT SSCIGQS A CLEL +
Sbjct: 181 IGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 240
Query: 247 PSFFQTLVGYKESYAP-FILHTGSSLSSISN-LVPIITPPQGFHISYKILFQINALLQHG 306
P F + Y E A F++ +GSS SS +N LVP++ PP GF + ++ILF++N L+Q+
Sbjct: 241 PDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNA 300
Query: 307 YLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLP 366
L GPALD +F+RL++ ++ +++ L+KLFHL ECCYEP WL+ +Y + S +LP
Sbjct: 301 CLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLP 360
Query: 367 WKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDK 426
P +SLDDGLVY++RVQ+TP +VYF GPE N+SNRV+RH+ ++NFLRVSFVDE+L+K
Sbjct: 361 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 420
Query: 427 LHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASR 486
+ S+DLSPR+S + RT++YDR+ SVLR+GIVIGDKKFEFLAFS+SQLRENS WMFA
Sbjct: 421 VRSMDLSPRSSTQR--RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 480
Query: 487 KGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKIT 546
++AA IRAWMGDF IRNVAKYAARLGQSF SSR TL V EIEVI DVE+ +
Sbjct: 481 DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 540
Query: 547 YCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSML 606
Y FSDGIGKIS A KVA KCGL +PSAFQIRY GYKGVVA+DP S+KKLSLRKSM
Sbjct: 541 YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 600
Query: 607 KYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSR 666
K+ S +T++DVL+WSKYQPC++NRQ+I LLSTLG+ D VF KKQ+E +D+LD+IL P
Sbjct: 601 KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 660
Query: 667 ALEVLELMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGR 726
A E L LM+PGE T+ILK L+L YKP+ EPFL+MML+ FRA+KLL+LRTK+RIF+ GR
Sbjct: 661 AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 720
Query: 727 TMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVK 786
+MMGCLDETRTLEYGQV V S P R F++ G VVVAKNPCLHPGDVR+L AV+V
Sbjct: 721 SMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNVP 780
Query: 787 ALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRL 846
AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD EL + +PM Y P PT L
Sbjct: 781 ALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQIL 840
Query: 847 DHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPK 906
DHDVT+ EV+EY Y+VND LG IANAHT FAD++P KA + CI+LAK FS AVDFPK
Sbjct: 841 DHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPK 900
Query: 907 TGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVAT 966
TGV A P +L V+EYPDFMEKPDKPTY S V+GKLFR VK+ + + +++ F+ +VA+
Sbjct: 901 TGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVAS 960
Query: 967 KCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKR 1026
K YD DMEVDGFE+Y+ EAF KA YDFKLGNLMDYYGIKTE E++SG I+RM+KSF KR
Sbjct: 961 KSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKR 1020
Query: 1027 NDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYN 1086
D E I A+++LRKE S FN A +E++N E AKASAWY VTYH YWG YN
Sbjct: 1021 RDAESIGRAVRALRKETLSLFN------ASEEEEN---ESAKASAWYHVTYHSSYWGLYN 1080
BLAST of Cp4.1LG13g06620 vs. TAIR10
Match:
AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)
HSP 1 Score: 749.2 bits (1933), Expect = 3.6e-216
Identity = 455/1140 (39.91%), Postives = 652/1140 (57.19%), Query Frame = 1
Query: 3 TTNDMGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTS 62
TTN T++I P + ADE+ F+E H G+ TV + I D FA V+FT+
Sbjct: 6 TTNR--STVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTT 65
Query: 63 KLGGEYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVS 122
L + +++ +L F + L+ + +I R +R++++ + G S
Sbjct: 66 -LEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDI----IPRPVDPRKRLDDIVLTVGFPES 125
Query: 123 KEEMKVIWKGEKWS-VEYGIGV--RKLGFYLSYEGVEYKMELCFENI------------- 182
E K EKW V I R++ F++ G YK+E+ FE+I
Sbjct: 126 DE--KRFCALEKWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDAS 185
Query: 183 ------LGLQGAPRIFKKAPLSSSSRLSSE------ESTGFRWIRDVDFTPSSCIGQSFA 242
L L+ P++FK+ + +++ S+ E F WIR DF+ S IG S
Sbjct: 186 EIDAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTC 245
Query: 243 LCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPP-QGFHISYKIL 302
CLE+ +G + F L Y+E G + +S + +VP++ G Y+IL
Sbjct: 246 FCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEIL 305
Query: 303 FQINALLQHGYLP-GPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQ 362
FQ+NAL+ + A D E +++ + V L KL CY+P ++K Q
Sbjct: 306 FQLNALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQ 365
Query: 363 YLSFYSS-KQLPWKPNVSL-DDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDN 422
S K P L + ++ R +TP+K+Y GPE +N VV++F + V +
Sbjct: 366 MQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSD 425
Query: 423 FLRVSFVDEELDKLHSIDLSPRTSAE---NDLRTRVYDRVLSVLRNGIVIGDKKFEFLAF 482
F+RV+FV+E+ KL + LS + RT +Y+RVLS+L GI +G K+FEFLAF
Sbjct: 426 FMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAF 485
Query: 483 SASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQH 542
SASQLR NS WMFAS + + A DIR WMG FR+IR+++K AAR+GQ F +SR+TL V
Sbjct: 486 SASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQ 545
Query: 543 EIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVA 602
++E I D+EV T+ YCFSDGIGKIS A++VA+KCGL SH PSAFQIRY GYKGV+A
Sbjct: 546 DVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIA 605
Query: 603 IDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQ 662
+D +S +KLSLR SMLK+ S + ++V W++ PCFLNR++I LLSTLGI+D +F Q
Sbjct: 606 VDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQ 665
Query: 663 KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAK 722
+ L ++LED AL VL+ +S ++L ++LL Y P+ EP+L+MMLR ++
Sbjct: 666 AVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQ 725
Query: 723 LLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPG------------RSSESNF 782
L +L+++ RI VPKGR ++GC+DE LEYGQV+V +L + E
Sbjct: 726 LSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETS 785
Query: 783 VVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHM--VDCVVFPQKGERPHPNECSGSDLDG 842
VV GKVVV KNPCLHPGD+R+LDA+ +DC++FPQKGERPHPNECSG DLDG
Sbjct: 786 VVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDG 845
Query: 843 DLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHT 902
D +FV WD ++ + PM Y + +DHDVT+ E+ ++ V YM++D LG I+ AH
Sbjct: 846 DQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHL 905
Query: 903 VFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVS 962
V AD+ P+KA + +C++LA L S AVDF KTG PA P+ L+ RE+PDF+E+ +KPTY+S
Sbjct: 906 VHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYIS 965
Query: 963 NGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKL 1022
V GKL+R VK S + + + T YD +E GFE ++ A ++ Y KL
Sbjct: 966 ESVFGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKL 1025
Query: 1023 GNLMDYYGIKTEPELISGNI----LRMAKSFDKRNDM-EQISLAMKSLRKEARSWFNEKG 1082
+LM YYG E E+++G + + +A+ + DM ++I+L++K L KEA WF
Sbjct: 1026 TSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF---- 1085
Query: 1083 SKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKRE 1088
KS DE K ASAWY VTY+P N ++ FLSFPW V D L+ IK E
Sbjct: 1086 EKSCEDEQQKK----KLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAE 1116
BLAST of Cp4.1LG13g06620 vs. TAIR10
Match:
AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)
HSP 1 Score: 569.7 bits (1467), Expect = 3.9e-162
Identity = 391/1075 (36.37%), Postives = 570/1075 (53.02%), Query Frame = 1
Query: 109 RMENVNVQWGNLVSKEEMKVIWKGEKWSVEYGIG---------VRKLGFYLSYEGV---- 168
++ + ++ G LVS+++ V W+ E V++ + RK + + V
Sbjct: 131 KLAGITLEIGTLVSRDDFFVSWRAE--GVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAV 190
Query: 169 ---EYKMELC---------------FENILGLQGAPRIFKKAPLSS------SSRLSSEE 228
+YK+EL F IL L +PR++ + L ++
Sbjct: 191 INCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPGDLLDDDD 250
Query: 229 STGFRWIRDVDFTPSSCIGQ--SFALCLELSHGDQLPS---FFQTLVGYKES--YAPFIL 288
WIR DFT IG+ S+ + + + ++L + +F+ +E + P I
Sbjct: 251 P----WIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIR 310
Query: 289 HTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGPALDNEFFRLVDPSRFR 348
+ +S+ I +G IS++I+F +N++L G L FF L+ R
Sbjct: 311 NEPCFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLL-----R 370
Query: 349 SDYVEYALDKLFHL---KECCYEPQKWLKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRVQ 408
+ + + L HL K ++ K LK + +L S D + + R+
Sbjct: 371 NQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSED--ISEIRRLV 430
Query: 409 ITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLS--------PRT 468
ITPT+ Y PE LSNRV+R + + FLRV+F+DE + ++S LS T
Sbjct: 431 ITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLT 490
Query: 469 SAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIRA 528
S+ +T V+ RV S+L +G + +K+ FLAFSA+QLR+ S W FA +DI+
Sbjct: 491 SSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKT 550
Query: 529 WMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEV-ISDVEVETNKITYCFSDGIGK 588
WMG F+ +NVAK AAR+G F S+ T+ V HE++ + D+E + Y FSDGIG
Sbjct: 551 WMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGT 610
Query: 589 ISGTLAEKVAEKCGL-ISHTPSAFQIRYAGYKGVVAIDPTSTK--KLSLRKSMLKYTSLD 648
I+ LA++V EK L + ++P A+QIRYAG+KGVVA P+ + +L+LR SM K+ S
Sbjct: 611 ITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKH 670
Query: 649 TQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLE 708
T +++ SW+++QP FLNRQ+I LLS LG+ D +F Q+ + +L+ IL+D A EVL
Sbjct: 671 TILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLT 730
Query: 709 LMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLD 768
+ + L +KP EP L ML + R A+L LR KSRIFV GR +MGCLD
Sbjct: 731 ASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLD 790
Query: 769 ETRTLEYGQVFVHCSLP----------GRSSESNF---VVKGKVVVAKNPCLHPGDVRLL 828
E LE+GQ F+ S P R E+ VVKG V +AKNPCLHPGDVR+L
Sbjct: 791 EAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRIL 850
Query: 829 DAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPEL--TRIKPVKPMSY 888
+AVDV LHHM DC++FPQKG+RPH NE SGSDLDGDLYFV WD +L K M Y
Sbjct: 851 EAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHY 910
Query: 889 EPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLF 948
+ A L V ++ ++ + + N+ LG I NAH V AD+ AM EC+ LA+L
Sbjct: 911 DAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELA 970
Query: 949 SIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDV-SSDVNTV 1008
+ AVDFPKTG + P +L+ + YPDFM K D TY SN +LG+L+R VK+V D
Sbjct: 971 ATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEAS 1030
Query: 1009 EIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNIL 1068
S + + YD +E+ GFED + EA+ +K YD +L L+ Y ++ E E+++G+I
Sbjct: 1031 SEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIW 1090
Query: 1069 RMAKSFDKRND--MEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEY-AKASAWYR 1098
M K K+ E++ + SL+KE R F E ++ K+ Y KASAWY
Sbjct: 1091 SMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYH 1150
BLAST of Cp4.1LG13g06620 vs. TAIR10
Match:
AT2G19930.1 (AT2G19930.1 RNA-dependent RNA polymerase family protein)
HSP 1 Score: 123.6 bits (309), Expect = 7.4e-28
Identity = 165/688 (23.98%), Postives = 282/688 (40.99%), Query Frame = 1
Query: 323 YEPQKW--LKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRVQITPTKVY-------FRGPE 382
YE W L + Y + L W D G + ++ + P Y +GP
Sbjct: 174 YEAAVWDRLGRHYCPQKDRRMLQW------DSGKTHYYQCNVAPNGSYTFKVLSALQGPL 233
Query: 383 ANLSNRVVRHFIDDVDNFLRVSFVD-EELDKLHSID--LSPRTSAENDLRTRVYDRVLSV 442
+ + + D DN L V F D ++ +SID + + A+N + + V
Sbjct: 234 LEHTGTHLHKVLGD-DNVLTVKFADVQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFV 293
Query: 443 LRNGIVIGDKK-FEFLAFSASQLRENSCWMFASRK-----GLSAADIRAWMGDFRQIRNV 502
++G KK +R +S + + G S + R + +
Sbjct: 294 FKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTL 353
Query: 503 AKYAARLGQSFGSSRRTLCVEQHEI--EVISDVE---------VETNKITYCFSDGIGKI 562
A Y AR S +TL V+ I + I D+ ++ NK SDG G I
Sbjct: 354 ANYMARFSLIL-SKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYI 413
Query: 563 SGTLA---------------EKVAEKCGLISHTPSAFQIRYAGY--KGVVAIDPT-STKK 622
S LA E + E C F++ Y GY KG ++ +
Sbjct: 414 SEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRT 473
Query: 623 LSLRKSMLK---------YTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKK 682
+ +R SM+K +++ + V + + + L++ ++ LLS GI + F+
Sbjct: 474 VQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDI 533
Query: 683 QKEAIDQLDSILEDPSRALEVLELMSPGEMTSI-LKELLLLYKPNEEPFLNMMLRTFRAA 742
+++ SI + AL ++ GEM +++L+ P +EP L L
Sbjct: 534 LLNTLEESKSIFYNKRAALNAA--LNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILLKT 593
Query: 743 KLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKN 802
+ DL+ ++ V + +MG +D T L+ +V V + + G+V+V +N
Sbjct: 594 EKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILE--------SGQISGEVLVYRN 653
Query: 803 PCLHPGDVRLLDAVDVKALHHMVD----CVVFPQKGERPHPNECSGSDLDGDLYFVGWDP 862
P LH GD+ +L A VKAL V V FPQKG R +E +G D DGD+YF+ +P
Sbjct: 654 PGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNP 713
Query: 863 E-LTRIKPVKPMSYEPAPTM----RLDHDVTMGEVQEYLVKYMVNDG------LGGIANA 922
E L KP +P P+ R ++ E++E L + + G +G A++
Sbjct: 714 ELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADS 773
Query: 923 HTVFADQ---------KPKKAMTAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDF 930
D+ + K M + ++L ++ A+D PK G P+ L+ +P +
Sbjct: 774 WLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHY 833
BLAST of Cp4.1LG13g06620 vs. TAIR10
Match:
AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)
HSP 1 Score: 118.6 bits (296), Expect = 2.4e-26
Identity = 115/448 (25.67%), Postives = 202/448 (45.09%), Query Frame = 1
Query: 555 FQIRYAGY--KGVVAIDPT-STKKLSLRKSMLKY------TSLDT--QVDVLSWSKY-QP 614
F+I Y GY KG + + + +R SM+K ++L T ++V++ S +
Sbjct: 455 FRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRK 514
Query: 615 CFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKE 674
L+R ++ LLS G+ + F+ + +++ +I A + + T+ +
Sbjct: 515 ARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTA---D 574
Query: 675 LLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVH 734
++L+ P +EP+L L + L+ R + + +MG +D T L+ ++ V
Sbjct: 575 MILVGIPLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEICVI 634
Query: 735 CSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHMVD----CVVFPQKGE 794
+ + G V+V +NP LH GD+ +L A VKAL V V FPQKG
Sbjct: 635 LH--------SGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGP 694
Query: 795 RPHPNECSGSDLDGDLYFVGWDPE-LTRIKPVKPMSYEPAPTM----RLDHDVTMGEVQE 854
R +E +G D DGD+YF+ +P+ L KP +P P+ R +++ E++E
Sbjct: 695 RSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEE 754
Query: 855 YLVK------YMVNDGLG-------GIANAHTVFADQ--KPKKAMTAECIKLAKLFSIAV 914
L K + D +G GI + D+ K K +KL ++ A+
Sbjct: 755 ELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDAL 814
Query: 915 DFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGV------KDVSSDVNT 961
D PK G + P +L ++ +P +ME+ K + S +LG +F V + S+++
Sbjct: 815 DAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISK 874
BLAST of Cp4.1LG13g06620 vs. NCBI nr
Match:
gi|948561979|gb|ALM88235.1| (RNA-dependent RNA polymerase 1c [Cucumis sativus])
HSP 1 Score: 1785.0 bits (4622), Expect = 0.0e+00
Identity = 889/1109 (80.16%), Postives = 964/1109 (86.93%), Query Frame = 1
Query: 7 MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
MGKTIEI+GF QVTADEVKEF+ENHTGDGTV TVRISKP DEKARFT TV F SKL
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 67 EYVVAQAAAEKR-LWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEE 126
EY+VA++ E+R LWF S YLKAR++E+ + V E+ERME+V G+++S +
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVL-EMERMEDVKGHLGSMISNGK 120
Query: 127 MKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILG----------------- 186
M+VIW+GEKWSVE+G G RKL FYLSYE EYKMELCFENIL
Sbjct: 121 MRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ 180
Query: 187 LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSF 246
LQGAPRIF+K P SSSS L S +ST FRWIRDVDFTPSSCIGQSF +CL+LS LP F
Sbjct: 181 LQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPF 240
Query: 247 FQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGP 306
FQTLVGYK +YAPFILH GSSL S SNLVPIITPPQ F ISYKILF+INALLQHGYL GP
Sbjct: 241 FQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGP 300
Query: 307 ALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNV 366
LD+EFFRLVD SRF SDY+E+AL+KLF+LKECCY+PQKWLK QYLS+Y+S QLPWK N+
Sbjct: 301 TLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNI 360
Query: 367 SLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSID 426
SLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FI D+DNFLRVSFVDEELDKLHSID
Sbjct: 361 SLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSID 420
Query: 427 LSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLS 486
L+PR+S+ EN RTRVYDRV+S+L+NGIVIG+KKFEFLAFSASQLRENS WMFASR+GLS
Sbjct: 421 LAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLS 480
Query: 487 AADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFS 546
AADIR WMGDF IRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE I YCFS
Sbjct: 481 AADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFS 540
Query: 547 DGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTS 606
DGIGKIS TLA+KVAEKCGL SHTPSAFQIRYAGYKGVVAIDPTS KKLSLRKSMLKY S
Sbjct: 541 DGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMS 600
Query: 607 LDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEV 666
LDTQ+DVL WSKYQPCFLNRQVINLLSTLGI+D VFVKKQKEAIDQLDSILEDPSRALEV
Sbjct: 601 LDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEV 660
Query: 667 LELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGC 726
LELMSPGEMTSILKELL Y PN+EPFLNMMLRTFRA KLLDLRTKSRIFVPKGRTMMGC
Sbjct: 661 LELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGC 720
Query: 727 LDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHM 786
LDET+TLEYGQVFVHCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVRLLDA+DVKALHHM
Sbjct: 721 LDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHM 780
Query: 787 VDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVT 846
VDCVVFPQKG+RPHPNECSGSDLDGDLYFV WD ELT IK VKPMSY+PAPT++LDHDVT
Sbjct: 781 VDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVT 840
Query: 847 MGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPA 906
+ EVQEY YMVNDGLG IANAHTVFAD+ KKAM+AECIKLAKLFSIAVDFPKTGVPA
Sbjct: 841 IEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPA 900
Query: 907 NFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDP 966
N P NLRV EYPDFM+KP+K TYVSNGVLGKLFRGVKDVSSDV+ EIF+REVATKCYDP
Sbjct: 901 NLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDP 960
Query: 967 DMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQ 1026
DMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGNIL+MAKSFDKR D+EQ
Sbjct: 961 DMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQ 1020
Query: 1027 ISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQR 1086
I+ AMKSLRKE R WFNE SKS YD+ +EYA+ASAWY VTYHPDYWG YNEG +R
Sbjct: 1021 IAFAMKSLRKEVRFWFNENESKSTYDD---IQDEYARASAWYCVTYHPDYWGCYNEGTKR 1080
Query: 1087 DHFLSFPWCVSDKLIQIKREKTCLVNFSP 1097
DHFLSFPWCV+DKLIQIKREK + N SP
Sbjct: 1081 DHFLSFPWCVADKLIQIKREKMSMRNSSP 1105
BLAST of Cp4.1LG13g06620 vs. NCBI nr
Match:
gi|778703938|ref|XP_011655453.1| (PREDICTED: probable RNA-dependent RNA polymerase 1 [Cucumis sativus])
HSP 1 Score: 1780.8 bits (4611), Expect = 0.0e+00
Identity = 888/1112 (79.86%), Postives = 965/1112 (86.78%), Query Frame = 1
Query: 7 MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
MGKTIEI+GF QVTADEVKEF+ENHTGDGTV TVRISKP DEKARFT TV F SKL
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 67 EYVVAQAAAEKR-LWFGSLYLKARKVEREIKTTAAARVHG--ELERMENVNVQWGNLVSK 126
EY+VA++ E+R LWF S YLKAR++E K A G E+ERME+V G+++S
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELE---KAVVAKETKGVLEMERMEDVKGHLGSMISN 120
Query: 127 EEMKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILG--------------- 186
+M+VIW+GEKWSVE+G G RKL FYLSYE EYKMELCFENIL
Sbjct: 121 GKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFL 180
Query: 187 --LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLP 246
LQGAPRIF+K P SSSS L S +ST FRWIRDVDFTPSSCIGQSF +CL+LS LP
Sbjct: 181 IQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLP 240
Query: 247 SFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLP 306
FFQTLVGYK +YAPFILH GSSL S SNLVPIITPPQ F ISYKILF+INALLQHGYL
Sbjct: 241 PFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLS 300
Query: 307 GPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKP 366
GP LD+EFFRLVD SRF SDY+++AL+KLF+LKECCY+PQKWLK QYLS+Y+S QLPWK
Sbjct: 301 GPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKS 360
Query: 367 NVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHS 426
N+SLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FI D+DNFLRVSFVDEELDKLHS
Sbjct: 361 NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS 420
Query: 427 IDLSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKG 486
IDL+PR+S+ EN RTRVYDRV+SVL+NGIVIG+KKFEFLAFSASQLRENS WMFASR+G
Sbjct: 421 IDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREG 480
Query: 487 LSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYC 546
LSAADIR WMGDF IRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE I YC
Sbjct: 481 LSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYC 540
Query: 547 FSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKY 606
FSDGIGKIS TLA+KVAEKCGLI+HTPSAFQIRYAGYKGVVAIDPTS KKLSLR SMLKY
Sbjct: 541 FSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKY 600
Query: 607 TSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRAL 666
SLDTQ+DVLSWSKYQPCFLNRQVINLLSTLGI D VFVKKQKEAIDQLDSILEDPSRAL
Sbjct: 601 MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRAL 660
Query: 667 EVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMM 726
EVLELMSPGEMTSILKELL Y PNEEPFLNMMLRTFRA KLLDL+TKSRIFVP+GRTM+
Sbjct: 661 EVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMI 720
Query: 727 GCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALH 786
GCLDETRTLEYGQVFVHCS+P RSSE NFVVKGK+VVAKNPCLHPGDVR+LDAVDVKALH
Sbjct: 721 GCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALH 780
Query: 787 HMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHD 846
HMVDCVVFPQKG+RPHPNECSGSDLDGDLYF WD ELT IK VKPM+YEPAPT++L+HD
Sbjct: 781 HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHD 840
Query: 847 VTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGV 906
VT+ E+QEY YMVNDG+G IANAHTVFAD+ KKAM+ ECIKLAKLFSIAVDFPKTGV
Sbjct: 841 VTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGV 900
Query: 907 PANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCY 966
PAN P NLRV EYPDFM+KP+KPTYVSNGVLGKLFRGVKDVSSDVNT EIF+REVATK Y
Sbjct: 901 PANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYY 960
Query: 967 DPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDM 1026
DPDMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGN+L+MAKSFDKRND+
Sbjct: 961 DPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDL 1020
Query: 1027 EQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGM 1086
EQI+ AMKSLRKE RSWFNE SK YD+ ++EYAKASAWY VTYHPDYWG YNEGM
Sbjct: 1021 EQITFAMKSLRKEVRSWFNENESKFTYDD---IEDEYAKASAWYYVTYHPDYWGCYNEGM 1080
Query: 1087 QRDHFLSFPWCVSDKLIQIKREKTCLVNFSPV 1098
QRDHFLSFPWCV+DKLIQIKR+K L N PV
Sbjct: 1081 QRDHFLSFPWCVADKLIQIKRDKMTLKNSYPV 1106
BLAST of Cp4.1LG13g06620 vs. NCBI nr
Match:
gi|700196297|gb|KGN51474.1| (hypothetical protein Csa_5G564290 [Cucumis sativus])
HSP 1 Score: 1780.8 bits (4611), Expect = 0.0e+00
Identity = 888/1112 (79.86%), Postives = 965/1112 (86.78%), Query Frame = 1
Query: 7 MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
MGKTIEI+GF QVTADEVKEF+ENHTGDGTV TVRISKP DEKARFT TV F SKL
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 67 EYVVAQAAAEKR-LWFGSLYLKARKVEREIKTTAAARVHG--ELERMENVNVQWGNLVSK 126
EY+VA++ E+R LWF S YLKAR++E K A G E+ERME+V G+++S
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELE---KAVVAKETKGVLEMERMEDVKGHLGSMISN 120
Query: 127 EEMKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILG--------------- 186
+M+VIW+GEKWSVE+G G RKL FYLSYE EYKMELCFENIL
Sbjct: 121 GKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFL 180
Query: 187 --LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLP 246
LQGAPRIF+K P SSSS L S +ST FRWIRDVDFTPSSCIGQSF +CL+LS LP
Sbjct: 181 IQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLP 240
Query: 247 SFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLP 306
FFQTLVGYK +YAPFILH GSSL S SNLVPIITPPQ F ISYKILF+INALLQHGYL
Sbjct: 241 PFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLS 300
Query: 307 GPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKP 366
GP LD+EFFRLVD SRF SDY+++AL+KLF+LKECCY+PQKWLK QYLS+Y+S QLPWK
Sbjct: 301 GPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKS 360
Query: 367 NVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHS 426
N+SLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FI D+DNFLRVSFVDEELDKLHS
Sbjct: 361 NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS 420
Query: 427 IDLSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKG 486
IDL+PR+S+ EN RTRVYDRV+SVL+NGIVIG+KKFEFLAFSASQLRENS WMFASR+G
Sbjct: 421 IDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREG 480
Query: 487 LSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYC 546
LSAADIR WMGDF IRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE I YC
Sbjct: 481 LSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYC 540
Query: 547 FSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKY 606
FSDGIGKIS TLA+KVAEKCGLI+HTPSAFQIRYAGYKGVVAIDPTS KKLSLR SMLKY
Sbjct: 541 FSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKY 600
Query: 607 TSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRAL 666
SLDTQ+DVLSWSKYQPCFLNRQVINLLSTLGI D VFVKKQKEAIDQLDSILEDPSRAL
Sbjct: 601 MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRAL 660
Query: 667 EVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMM 726
EVLELMSPGEMTSILKELL Y PNEEPFLNMMLRTFRA KLLDL+TKSRIFVP+GRTM+
Sbjct: 661 EVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMI 720
Query: 727 GCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALH 786
GCLDETRTLEYGQVFVHCS+P RSSE NFVVKGK+VVAKNPCLHPGDVR+LDAVDVKALH
Sbjct: 721 GCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALH 780
Query: 787 HMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHD 846
HMVDCVVFPQKG+RPHPNECSGSDLDGDLYF WD ELT IK VKPM+YEPAPT++L+HD
Sbjct: 781 HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHD 840
Query: 847 VTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGV 906
VT+ E+QEY YMVNDG+G IANAHTVFAD+ KKAM+ ECIKLAKLFSIAVDFPKTGV
Sbjct: 841 VTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGV 900
Query: 907 PANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCY 966
PAN P NLRV EYPDFM+KP+KPTYVSNGVLGKLFRGVKDVSSDVNT EIF+REVATK Y
Sbjct: 901 PANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYY 960
Query: 967 DPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDM 1026
DPDMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGN+L+MAKSFDKRND+
Sbjct: 961 DPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDL 1020
Query: 1027 EQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGM 1086
EQI+ AMKSLRKE RSWFNE SK YD+ ++EYAKASAWY VTYHPDYWG YNEGM
Sbjct: 1021 EQITFAMKSLRKEVRSWFNENESKFTYDD---IEDEYAKASAWYYVTYHPDYWGCYNEGM 1080
Query: 1087 QRDHFLSFPWCVSDKLIQIKREKTCLVNFSPV 1098
QRDHFLSFPWCV+DKLIQIKR+K L N PV
Sbjct: 1081 QRDHFLSFPWCVADKLIQIKRDKMTLKNSYPV 1106
BLAST of Cp4.1LG13g06620 vs. NCBI nr
Match:
gi|307135834|gb|ADN33705.1| (RNA-dependent RNA polymerase [Cucumis melo subsp. melo])
HSP 1 Score: 1602.4 bits (4148), Expect = 0.0e+00
Identity = 794/956 (83.05%), Postives = 851/956 (89.02%), Query Frame = 1
Query: 148 FYLSYEGVEYKMELCFENILGLQ-GAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPS 207
F+LS+ + L F ++L LQ APRIF+K P SSSS L S ES FRWIRDVDFTPS
Sbjct: 179 FFLSF----FSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPS 238
Query: 208 SCIGQSFALCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGF 267
SCIGQSF LCL+ S LP FFQTLVGYK +Y PFIL GSS S SNLVPIITPPQ F
Sbjct: 239 SCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAF 298
Query: 268 HISYKILFQINALLQHGYLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQ 327
ISYKILF+INALLQ GYL GP LD+EFFRLVD SRF DY+E+AL+KLF+LKECCY+PQ
Sbjct: 299 DISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQ 358
Query: 328 KWLKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFID 387
KWLK QYLS+Y S QLPWKPNVSLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FID
Sbjct: 359 KWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFID 418
Query: 388 DVDNFLRVSFVDEELDKLHSIDLSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFL 447
D+DNFLRVSFVDEELDKLHSIDL+PR+S+ EN+ RTRVYDRV+SVL+NGIVIGDKKFEFL
Sbjct: 419 DIDNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFL 478
Query: 448 AFSASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVE 507
AFSASQLRENS WMFASRKGLSAADIR WMGDFRQIRNVAKYAARLGQSFGSSR+TLCV+
Sbjct: 479 AFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVK 538
Query: 508 QHEIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGV 567
+HEIEVI DVEVE I YCFSDGIGKIS TLA+KVA+KCGL HTPSAFQIRYAGYKGV
Sbjct: 539 EHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGV 598
Query: 568 VAIDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVK 627
VAIDPTS KKLSLRKSMLKY SLDTQ+DVL WSKYQPCFLNRQVINLLSTLGI D VFVK
Sbjct: 599 VAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVK 658
Query: 628 KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAA 687
KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELL Y PNEEPFLNMML TFRA
Sbjct: 659 KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRAN 718
Query: 688 KLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKN 747
KLLDL+TKSRIFVP+GRTMMGCLDETRTLEYGQVFVHCS+PGRSSE NFVVKGKVVVAKN
Sbjct: 719 KLLDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKN 778
Query: 748 PCLHPGDVRLLDAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTR 807
PCLHPGDVRLLDA+DVKALHHMVDCVVFPQKG+RPHPNECSGSDLDGDLYFV WD ELT
Sbjct: 779 PCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTC 838
Query: 808 IKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTA 867
IK VKPMSYEPAP+++LDHDVT+ EVQ+Y YMVNDGLG IANAHTVFAD+ KKAM+A
Sbjct: 839 IKQVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSA 898
Query: 868 ECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKD 927
ECIKLAKLFSIAVDFPKTGVPAN P NLRV EYPDFM+KPDKPTYVSNGVLGKLFRGVKD
Sbjct: 899 ECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKD 958
Query: 928 VSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEP 987
VSSDVNT EIF++EVATKCYDPDMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEP
Sbjct: 959 VSSDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEP 1018
Query: 988 ELISGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKA 1047
EL+SGNIL+MAKSFDKRND+EQI+ AMKSLRKE RSWFNE SK Y +D +D+EYA+A
Sbjct: 1019 ELVSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTY--EDIEDDEYARA 1078
Query: 1048 SAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKTCLVNFSPVLTFQ 1102
SAWY VTYHPDYWGRYNEG QRDHFLSFPWCV+DKLIQIKREK L N SP+ + Q
Sbjct: 1079 SAWYCVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQ 1128
BLAST of Cp4.1LG13g06620 vs. NCBI nr
Match:
gi|659074597|ref|XP_008437690.1| (PREDICTED: probable RNA-dependent RNA polymerase 1, partial [Cucumis melo])
HSP 1 Score: 1600.5 bits (4143), Expect = 0.0e+00
Identity = 787/932 (84.44%), Postives = 839/932 (90.02%), Query Frame = 1
Query: 171 GAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSFFQ 230
GAPRIF+K P SSSS L S ES FRWIRDVDFTPSSCIGQSF LCL+ S LP FFQ
Sbjct: 1 GAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQ 60
Query: 231 TLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGPAL 290
TLVGYK +Y PFIL GSS S SNLVPIITPPQ F ISYKILF+INALLQ GYL GP L
Sbjct: 61 TLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTL 120
Query: 291 DNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNVSL 350
D+EFFRLVD SRF DY+E+AL+KLF+LKECCY+PQKWLK QYLS+Y S QLPWKPNVSL
Sbjct: 121 DDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSL 180
Query: 351 DDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLS 410
DDGLVYVHRVQITP KVYF GPEANLSNRVVR FIDD+DNFLRVSFVDEELDKLHSIDL+
Sbjct: 181 DDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLA 240
Query: 411 PRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAA 470
PR+S+ EN+ RTRVYDRV+SVL+NGIVIGDKKFEFLAFSASQLRENS WMFASRKGLSAA
Sbjct: 241 PRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAA 300
Query: 471 DIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDG 530
DIR WMGDFRQIRNVAKYAARLGQSFGSSR+TLCV++HEIEVI DVEVE I YCFSDG
Sbjct: 301 DIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDG 360
Query: 531 IGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLD 590
IGKIS TLA+KVA+KCGL HTPSAFQIRYAGYKGVVAIDPTS KKLSLRKSMLKY SLD
Sbjct: 361 IGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLD 420
Query: 591 TQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLE 650
TQ+DVL WSKYQPCFLNRQVINLLSTLGI D VFVKKQKEAIDQLDSILEDPSRALEVLE
Sbjct: 421 TQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLE 480
Query: 651 LMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLD 710
LMSPGEMTSILKELL Y PNEEPFLNMML TFRA KLLDL+TKSRIFVP+GRTMMGCLD
Sbjct: 481 LMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLD 540
Query: 711 ETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHMVD 770
ETRTLEYGQVFVHCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVRLLDA+DVKALHHMVD
Sbjct: 541 ETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVD 600
Query: 771 CVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVTMG 830
CVVFPQKG+RPHPNECSGSDLDGDLYFV WD ELT IK VKPMSYEPAP+++LDHDVT+
Sbjct: 601 CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIE 660
Query: 831 EVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPANF 890
EVQ+Y YMVNDGLG IANAHTVFAD+ KKAM+AECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 661 EVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANL 720
Query: 891 PHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDM 950
P NLRV EYPDFM+KPDKPTYVSNGVLGKLFRGVKDVSSDVNT EIF++EVATKCYDPDM
Sbjct: 721 PRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDM 780
Query: 951 EVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQIS 1010
EVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGNIL+MAKSFDKRND+EQI+
Sbjct: 781 EVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIA 840
Query: 1011 LAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQRDH 1070
AMKSLRKE RSWFNE SK Y +D +D+EYA+ASAWY VTYHPDYWGRYNEG QRDH
Sbjct: 841 FAMKSLRKEVRSWFNENESKYTY--EDIEDDEYARASAWYCVTYHPDYWGRYNEGTQRDH 900
Query: 1071 FLSFPWCVSDKLIQIKREKTCLVNFSPVLTFQ 1102
FLSFPWCV+DKLIQIKREK L N SP+ + Q
Sbjct: 901 FLSFPWCVADKLIQIKREKMSLRNSSPMSSLQ 930
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
RDR1_ARATH | 0.0e+00 | 57.07 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1 | [more] |
RDR1_ORYSJ | 9.4e-267 | 62.53 | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 ... | [more] |
RDR2_ARATH | 6.4e-215 | 39.91 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1 | [more] |
RDR2_ORYSJ | 1.2e-208 | 41.35 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 ... | [more] |
SHL2_ORYSJ | 1.7e-162 | 38.81 | Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SH... | [more] |
Match Name | E-value | Identity | Description | |
A0A0S1YCZ4_CUCSA | 0.0e+00 | 80.16 | RNA-dependent RNA polymerase 1c OS=Cucumis sativus GN=RDR1c PE=2 SV=1 | [more] |
A0A0A0KRH3_CUCSA | 0.0e+00 | 79.86 | Uncharacterized protein OS=Cucumis sativus GN=Csa_5G564290 PE=4 SV=1 | [more] |
E5GB63_CUCME | 0.0e+00 | 83.05 | RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo PE=4 SV=1 | [more] |
B9HJH7_POPTR | 0.0e+00 | 58.67 | RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s... | [more] |
F6HFC8_VITVI | 0.0e+00 | 59.61 | Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05870 PE=4 SV=... | [more] |