Cp4.1LG13g06620 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g06620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-dependent RNA polymerase
Location	Cp4.1LG13 : 4528129 .. 4532310 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAAAAAACATGGCTACAACAAACGACATGGGAAAGACGATCGAGATTTTTGGATTCCCCGCACAGGTCACCGCCGACGAGGTGAAGGAATTTATCGAGAATCACACGGGAGACGGAACGGTGTTGACGGTGAGGATTTCCAAACCCAATGACGAAAAAGCCCGGTTCACATTCGCCACGGTCCGGTTCACCAGCAAACTCGGGGGTGAGTATGTGGTGGCGCAGGCGGCGGCGGAGAAGCGTCTGTGGTTCGGAAGTCTGTATCTGAAGGCTAGAAAAGTGGAGAGGGAGATCAAGACGACGGCGGCGGCGAGAGTTCACGGCGAGTTGGAGAGAATGGAAAACGTGAATGTGCAGTGGGGAAACCTGGTTTCGAAGGAGGAAATGAAGGTGATTTGGAAGGGGGAAAAATGGAGTGTGGAATATGGAATTGGAGTAAGGAAATTGGGGTTTTATTTGAGCTATGAGGGTGTTGAGTACAAAATGGAGCTCTGTTTTGAGAATATTCTCGGAGTTCAGCTTCGTTGCTCTGATGATCGCGGTTCCAAGCATTTTCTCATTCAGGTTTGTCTTGTGACTTTGCTTTGGACTTTTCCAAAAGGCTACCAAGAGAGTATTCTTTATTTATAAACTCATAATTATTCCTAAAATATTTATTTATTTATTTATTTATTTATTTATTTTTAAAACCTTTTCTCAATTTAAAAACATTTTTTAAAAATTAACTTCCGAGTGGTTGAAATTTATTTTAACTATGGTTGGAGTGGGTATTAAATCTCCGTTACATTATACTGAATTTGTTCGAATCGGCAGTTGCAGGGTGCTCCACGGATTTTCAAGAAAGCTCCATTGTCTTCTTCCTCTCGATTATCTTCAGAGGAATCCACTGGTTTCCGTTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATCGGACAGTCTTTTGCTCTGTGTTTGGAACTTTCTCATGGAGATCAGCTTCCTTCTTTCTTTCAAACATTGGTCGGCTACAAAGAAAGCTATGCTCCATTCATTCTACACACAGGTTCTTCTTTATCCTCCATTTCAAATCTGGTACCTATCATTACTCCACCTCAAGGCTTTCATATCTCCTATAAAATTTTGTTCCAAATCAATGCCCTGCTTCAACATGGTTATCTTCCTGGACCAGCGCTGGATAATGAATTTTTCCGACTGGTCGATCCCAGTCGATTTCGTTCTGATTATGTCGAATATGCCCTAGACAAACTTTTTCATTTGAAGGAATGTTGCTATGAGCCACAAAAATGGCTCAAGCAGCAATATCTGTCATTCTACAGCTCTAAGCAGCTTCCATGGAAACCTAATGTTTCTTTGGATGATGGCCTGGTCTATGTGCACAGGGTTCAAATTACGCCTACTAAAGTGTACTTCCGTGGTCCGGAGGCGAATCTCTCTAATAGAGTAGTCCGTCATTTTATTGATGATGTTGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTTAGATAAACTTCATTCCATTGATTTATCTCCGCGTACATCTGCTGAAAATGATTTAAGAACTAGAGTTTATGATAGAGTACTGTCGGTGTTAAGAAATGGTATAGTTATTGGTGATAAGAAGTTTGAGTTTCTTGCTTTCTCGGCGAGTCAACTACGGGAAAATTCTTGTTGGATGTTTGCTTCGAGGAAGGGGCTTAGTGCAGCAGATATCAGAGCGTGGATGGGTGACTTTCGTCAGATAAGAAATGTGGCAAAATATGCTGCTCGACTAGGCCAATCTTTTGGCTCATCCAGAAGAACTTTGTGTGTTGAACAACATGAAATTGAAGTTATTTCTGATGTTGAAGTTGAAACCAATAAAATTACTTATTGTTTCTCTGATGGGATTGGAAAAATATCTGGAACATTGGCTGAGAAGGTTGCTGAAAAATGTGGTTTAATCAGCCATACACCATCTGCCTTTCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTATCGACCCAACATCGACGAAGAAATTGTCGTTACGAAAGAGTATGTTGAAGTATACGTCGCTCGACACCCAAGTCGATGTCTTGTCATGGAGCAAGTACCAACCCTGTTTTCTTAACCGTCAGGTGATAAACCTTCTGTCCACTCTTGGAATTAAGGACCGCGTTTTTGTGAAAAAACAAAAGGAGGCTATAGATCAACTGGATTCCATTTTAGAAGATCCGTCGAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCAGGGGAAATGACTAGTATTCTTAAGGAATTGCTTTTGCTTTACAAGCCAAATGAAGAGCCTTTTCTAAATATGATGCTACGAACATTTCGAGCAGCTAAATTGTTAGATTTGAGGACTAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTGGACGAAACCCGAACGTTAGAATACGGGCAGGTGTTTGTTCATTGCTCTCTCCCTGGAAGATCAAGCGAAAGTAATTTTGTTGTTAAGGGTAAAGTGGTGGTTGCTAAGAATCCCTGTTTACACCCAGGGGACGTGCGTTTGCTCGACGCTGTTGATGTGAAAGCTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGGAAAGGTAAGCAAGTTTAACGTGTATGAATCGTTTATGTATTGAACACATTTCACATACCCATACTTGTTGTAAATTCATGCATTTTCCTTGATATTTATGGTAAGATTACTGACATACATTCATTAGTCTGTTTTTTATAGCAATTTTTTTAATCAGTTCTTGTTGTCCTTAACTTATATATCAAATTTGTTATGTTAGACCTCACCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGTTGGTTGGGATCCGGAGCTGACTCGTATTAAACCAGTTAAACCTATGAGTTACGAGCCCGCACCAACTATGCGGTTGGATCACGATGTCACAATGGGGGTATGGTCTCAGGAAGTATTTATATCTATTGCAAATATGTACATCTTTTTTGTTCTTTTTTTTTTTTCATATATATAAATAAGATGCATTGTATATCAGATTTGAAAGTGTACAACAAATTCTCGATCATTTTGATACAGGAAGTGCAGGAATACTTGGTCAAGTACATGGTGAATGATGGTCTTGGAGGCATTGCAAATGCTCACACTGTGTTTGCAGATCAGAAGCCTAAAAAGGCAATGACTGCTGAATGTATTAAACTTGCAAAATTATTCTCCATTGCTGTTGACTTCCCCAAGACCGGTGTGCCAGCAAACTTTCCACACAATCTTCGTGTTCGTGAGTATCCAGATTTCATGGAGAAGCCCGACAAGCCGACTTATGTATCGAATGGTGTTCTTGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCCGATGTCAACACCGTTGAAATCTTCTCTAGGGAAGTTGCTACCAAGTGCTACGATCCAGACATGGAAGTAGATGGTTTTGAGGATTACTTGAGCGAAGCTTTTGAGTACAAAGCCAGGTACGACTTCAAATTGGGGAACCTCATGGATTATTATGGTATCAAAACAGAACCTGAATTAATTAGTGGAAATATTTTGAGAATGGCCAAGTCTTTTGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAAATCACTAAGAAAAGAGGCAAGGTCTTGGTTCAATGAGAAAGGAAGTAAGTCTGCATACGACGAGGACGACAACAAAGATGAGGAATATGCAAAAGCATCTGCTTGGTACCGTGTCACGTATCATCCAGATTATTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTCCCATGGTGCGTTTCTGACAAACTTATTCAAATCAAAAGAGAGAAGACATGCTTGGTAAATTTTTCACCGGTACTAACTTTTCAAGACTAGAATGTTTGATGTCTGTGTCCTTGAGTTCTAAGATGATACCATGATGTTGTAATTTATATTTTCCTACTTGAAAGAAATTAATTTAGATGTTTTTGTTGGAAATTTTATACTTGAGTAGATGATAATAATGAATTAAAAGCAAAGTAATTTATTGTATTATGAATTTCTATCGCCATTCTTTACATAATTTTAATTTTATCATGCAATCTTAGCAAAGATTTATGGGT

mRNA sequence

TTGAAAAAAACATGGCTACAACAAACGACATGGGAAAGACGATCGAGATTTTTGGATTCCCCGCACAGGTCACCGCCGACGAGGTGAAGGAATTTATCGAGAATCACACGGGAGACGGAACGGTGTTGACGGTGAGGATTTCCAAACCCAATGACGAAAAAGCCCGGTTCACATTCGCCACGGTCCGGTTCACCAGCAAACTCGGGGGTGAGTATGTGGTGGCGCAGGCGGCGGCGGAGAAGCGTCTGTGGTTCGGAAGTCTGTATCTGAAGGCTAGAAAAGTGGAGAGGGAGATCAAGACGACGGCGGCGGCGAGAGTTCACGGCGAGTTGGAGAGAATGGAAAACGTGAATGTGCAGTGGGGAAACCTGGTTTCGAAGGAGGAAATGAAGGTGATTTGGAAGGGGGAAAAATGGAGTGTGGAATATGGAATTGGAGTAAGGAAATTGGGGTTTTATTTGAGCTATGAGGGTGTTGAGTACAAAATGGAGCTCTGTTTTGAGAATATTCTCGGATTGCAGGGTGCTCCACGGATTTTCAAGAAAGCTCCATTGTCTTCTTCCTCTCGATTATCTTCAGAGGAATCCACTGGTTTCCGTTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATCGGACAGTCTTTTGCTCTGTGTTTGGAACTTTCTCATGGAGATCAGCTTCCTTCTTTCTTTCAAACATTGGTCGGCTACAAAGAAAGCTATGCTCCATTCATTCTACACACAGGTTCTTCTTTATCCTCCATTTCAAATCTGGTACCTATCATTACTCCACCTCAAGGCTTTCATATCTCCTATAAAATTTTGTTCCAAATCAATGCCCTGCTTCAACATGGTTATCTTCCTGGACCAGCGCTGGATAATGAATTTTTCCGACTGGTCGATCCCAGTCGATTTCGTTCTGATTATGTCGAATATGCCCTAGACAAACTTTTTCATTTGAAGGAATGTTGCTATGAGCCACAAAAATGGCTCAAGCAGCAATATCTGTCATTCTACAGCTCTAAGCAGCTTCCATGGAAACCTAATGTTTCTTTGGATGATGGCCTGGTCTATGTGCACAGGGTTCAAATTACGCCTACTAAAGTGTACTTCCGTGGTCCGGAGGCGAATCTCTCTAATAGAGTAGTCCGTCATTTTATTGATGATGTTGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTTAGATAAACTTCATTCCATTGATTTATCTCCGCGTACATCTGCTGAAAATGATTTAAGAACTAGAGTTTATGATAGAGTACTGTCGGTGTTAAGAAATGGTATAGTTATTGGTGATAAGAAGTTTGAGTTTCTTGCTTTCTCGGCGAGTCAACTACGGGAAAATTCTTGTTGGATGTTTGCTTCGAGGAAGGGGCTTAGTGCAGCAGATATCAGAGCGTGGATGGGTGACTTTCGTCAGATAAGAAATGTGGCAAAATATGCTGCTCGACTAGGCCAATCTTTTGGCTCATCCAGAAGAACTTTGTGTGTTGAACAACATGAAATTGAAGTTATTTCTGATGTTGAAGTTGAAACCAATAAAATTACTTATTGTTTCTCTGATGGGATTGGAAAAATATCTGGAACATTGGCTGAGAAGGTTGCTGAAAAATGTGGTTTAATCAGCCATACACCATCTGCCTTTCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTATCGACCCAACATCGACGAAGAAATTGTCGTTACGAAAGAGTATGTTGAAGTATACGTCGCTCGACACCCAAGTCGATGTCTTGTCATGGAGCAAGTACCAACCCTGTTTTCTTAACCGTCAGGTGATAAACCTTCTGTCCACTCTTGGAATTAAGGACCGCGTTTTTGTGAAAAAACAAAAGGAGGCTATAGATCAACTGGATTCCATTTTAGAAGATCCGTCGAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCAGGGGAAATGACTAGTATTCTTAAGGAATTGCTTTTGCTTTACAAGCCAAATGAAGAGCCTTTTCTAAATATGATGCTACGAACATTTCGAGCAGCTAAATTGTTAGATTTGAGGACTAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTGGACGAAACCCGAACGTTAGAATACGGGCAGGTGTTTGTTCATTGCTCTCTCCCTGGAAGATCAAGCGAAAGTAATTTTGTTGTTAAGGGTAAAGTGGTGGTTGCTAAGAATCCCTGTTTACACCCAGGGGACGTGCGTTTGCTCGACGCTGTTGATGTGAAAGCTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGGAAAGACCTCACCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGTTGGTTGGGATCCGGAGCTGACTCGTATTAAACCAGTTAAACCTATGAGTTACGAGCCCGCACCAACTATGCGGTTGGATCACGATGTCACAATGGGGGAAGTGCAGGAATACTTGGTCAAGTACATGGTGAATGATGGTCTTGGAGGCATTGCAAATGCTCACACTGTGTTTGCAGATCAGAAGCCTAAAAAGGCAATGACTGCTGAATGTATTAAACTTGCAAAATTATTCTCCATTGCTGTTGACTTCCCCAAGACCGGTGTGCCAGCAAACTTTCCACACAATCTTCGTGTTCGTGAGTATCCAGATTTCATGGAGAAGCCCGACAAGCCGACTTATGTATCGAATGGTGTTCTTGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCCGATGTCAACACCGTTGAAATCTTCTCTAGGGAAGTTGCTACCAAGTGCTACGATCCAGACATGGAAGTAGATGGTTTTGAGGATTACTTGAGCGAAGCTTTTGAGTACAAAGCCAGGTACGACTTCAAATTGGGGAACCTCATGGATTATTATGGTATCAAAACAGAACCTGAATTAATTAGTGGAAATATTTTGAGAATGGCCAAGTCTTTTGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAAATCACTAAGAAAAGAGGCAAGGTCTTGGTTCAATGAGAAAGGAAGTAAGTCTGCATACGACGAGGACGACAACAAAGATGAGGAATATGCAAAAGCATCTGCTTGGTACCGTGTCACGTATCATCCAGATTATTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTCCCATGGTGCGTTTCTGACAAACTTATTCAAATCAAAAGAGAGAAGACATGCTTGGTAAATTTTTCACCGGTACTAACTTTTCAAGACTAGAATGTTTGATGTCTGTGTCCTTGAGTTCTAAGATGATACCATGATGTTGTAATTTATATTTTCCTACTTGAAAGAAATTAATTTAGATGTTTTTGTTGGAAATTTTATACTTGAGTAGATGATAATAATGAATTAAAAGCAAAGTAATTTATTGTATTATGAATTTCTATCGCCATTCTTTACATAATTTTAATTTTATCATGCAATCTTAGCAAAGATTTATGGGT

Coding sequence (CDS)

ATGGCTACAACAAACGACATGGGAAAGACGATCGAGATTTTTGGATTCCCCGCACAGGTCACCGCCGACGAGGTGAAGGAATTTATCGAGAATCACACGGGAGACGGAACGGTGTTGACGGTGAGGATTTCCAAACCCAATGACGAAAAAGCCCGGTTCACATTCGCCACGGTCCGGTTCACCAGCAAACTCGGGGGTGAGTATGTGGTGGCGCAGGCGGCGGCGGAGAAGCGTCTGTGGTTCGGAAGTCTGTATCTGAAGGCTAGAAAAGTGGAGAGGGAGATCAAGACGACGGCGGCGGCGAGAGTTCACGGCGAGTTGGAGAGAATGGAAAACGTGAATGTGCAGTGGGGAAACCTGGTTTCGAAGGAGGAAATGAAGGTGATTTGGAAGGGGGAAAAATGGAGTGTGGAATATGGAATTGGAGTAAGGAAATTGGGGTTTTATTTGAGCTATGAGGGTGTTGAGTACAAAATGGAGCTCTGTTTTGAGAATATTCTCGGATTGCAGGGTGCTCCACGGATTTTCAAGAAAGCTCCATTGTCTTCTTCCTCTCGATTATCTTCAGAGGAATCCACTGGTTTCCGTTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATCGGACAGTCTTTTGCTCTGTGTTTGGAACTTTCTCATGGAGATCAGCTTCCTTCTTTCTTTCAAACATTGGTCGGCTACAAAGAAAGCTATGCTCCATTCATTCTACACACAGGTTCTTCTTTATCCTCCATTTCAAATCTGGTACCTATCATTACTCCACCTCAAGGCTTTCATATCTCCTATAAAATTTTGTTCCAAATCAATGCCCTGCTTCAACATGGTTATCTTCCTGGACCAGCGCTGGATAATGAATTTTTCCGACTGGTCGATCCCAGTCGATTTCGTTCTGATTATGTCGAATATGCCCTAGACAAACTTTTTCATTTGAAGGAATGTTGCTATGAGCCACAAAAATGGCTCAAGCAGCAATATCTGTCATTCTACAGCTCTAAGCAGCTTCCATGGAAACCTAATGTTTCTTTGGATGATGGCCTGGTCTATGTGCACAGGGTTCAAATTACGCCTACTAAAGTGTACTTCCGTGGTCCGGAGGCGAATCTCTCTAATAGAGTAGTCCGTCATTTTATTGATGATGTTGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTTAGATAAACTTCATTCCATTGATTTATCTCCGCGTACATCTGCTGAAAATGATTTAAGAACTAGAGTTTATGATAGAGTACTGTCGGTGTTAAGAAATGGTATAGTTATTGGTGATAAGAAGTTTGAGTTTCTTGCTTTCTCGGCGAGTCAACTACGGGAAAATTCTTGTTGGATGTTTGCTTCGAGGAAGGGGCTTAGTGCAGCAGATATCAGAGCGTGGATGGGTGACTTTCGTCAGATAAGAAATGTGGCAAAATATGCTGCTCGACTAGGCCAATCTTTTGGCTCATCCAGAAGAACTTTGTGTGTTGAACAACATGAAATTGAAGTTATTTCTGATGTTGAAGTTGAAACCAATAAAATTACTTATTGTTTCTCTGATGGGATTGGAAAAATATCTGGAACATTGGCTGAGAAGGTTGCTGAAAAATGTGGTTTAATCAGCCATACACCATCTGCCTTTCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTATCGACCCAACATCGACGAAGAAATTGTCGTTACGAAAGAGTATGTTGAAGTATACGTCGCTCGACACCCAAGTCGATGTCTTGTCATGGAGCAAGTACCAACCCTGTTTTCTTAACCGTCAGGTGATAAACCTTCTGTCCACTCTTGGAATTAAGGACCGCGTTTTTGTGAAAAAACAAAAGGAGGCTATAGATCAACTGGATTCCATTTTAGAAGATCCGTCGAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCAGGGGAAATGACTAGTATTCTTAAGGAATTGCTTTTGCTTTACAAGCCAAATGAAGAGCCTTTTCTAAATATGATGCTACGAACATTTCGAGCAGCTAAATTGTTAGATTTGAGGACTAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTGGACGAAACCCGAACGTTAGAATACGGGCAGGTGTTTGTTCATTGCTCTCTCCCTGGAAGATCAAGCGAAAGTAATTTTGTTGTTAAGGGTAAAGTGGTGGTTGCTAAGAATCCCTGTTTACACCCAGGGGACGTGCGTTTGCTCGACGCTGTTGATGTGAAAGCTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGGAAAGACCTCACCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGTTGGTTGGGATCCGGAGCTGACTCGTATTAAACCAGTTAAACCTATGAGTTACGAGCCCGCACCAACTATGCGGTTGGATCACGATGTCACAATGGGGGAAGTGCAGGAATACTTGGTCAAGTACATGGTGAATGATGGTCTTGGAGGCATTGCAAATGCTCACACTGTGTTTGCAGATCAGAAGCCTAAAAAGGCAATGACTGCTGAATGTATTAAACTTGCAAAATTATTCTCCATTGCTGTTGACTTCCCCAAGACCGGTGTGCCAGCAAACTTTCCACACAATCTTCGTGTTCGTGAGTATCCAGATTTCATGGAGAAGCCCGACAAGCCGACTTATGTATCGAATGGTGTTCTTGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCCGATGTCAACACCGTTGAAATCTTCTCTAGGGAAGTTGCTACCAAGTGCTACGATCCAGACATGGAAGTAGATGGTTTTGAGGATTACTTGAGCGAAGCTTTTGAGTACAAAGCCAGGTACGACTTCAAATTGGGGAACCTCATGGATTATTATGGTATCAAAACAGAACCTGAATTAATTAGTGGAAATATTTTGAGAATGGCCAAGTCTTTTGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAAATCACTAAGAAAAGAGGCAAGGTCTTGGTTCAATGAGAAAGGAAGTAAGTCTGCATACGACGAGGACGACAACAAAGATGAGGAATATGCAAAAGCATCTGCTTGGTACCGTGTCACGTATCATCCAGATTATTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTCCCATGGTGCGTTTCTGACAAACTTATTCAAATCAAAAGAGAGAAGACATGCTTGGTAAATTTTTCACCGGTACTAACTTTTCAAGACTAG

Protein sequence

MATTNDMGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGGEYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEEMKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGLQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKTCLVNFSPVLTFQD

Homology

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BLAST of Cp4.1LG13g06620 vs. Swiss-Prot
Match: RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1222.6 bits (3162), Expect = 0.0e+00
Identity = 630/1104 (57.07%), Postives = 798/1104 (72.28%), Query Frame = 1


Query: 7    MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
            MGKTI++FGFP  V+A+EVK+F+E  TG GTV  +++ +P     R  +A V+FTS+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPR-VYAIVQFTSERHT 60

Query: 67   EYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEEM 126
              ++  AA  +RL++G  YLKA +VE++I     A +H     +  + + +G  VS ++ 
Sbjct: 61   RLIITAAA--ERLYYGRSYLKAFEVEQDIVPKPRASLH----TISGLKMFFGCQVSTKKF 120

Query: 127  KVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGLQ---------------- 186
              +W  +   V +GIG+RKL F  S+   +Y++EL +ENI  +                 
Sbjct: 121  LTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 180

Query: 187  -GAPRIFKKA--PLSSSSRLSSEESTGF--RWIRDVDFTPSSCIGQSFALCLELSHGDQL 246
             GAP+IF+K   P++    +    S G   +WIR  DFT SSCIGQS A CLEL     +
Sbjct: 181  IGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 240

Query: 247  PSFFQTLVGYKESYAP-FILHTGSSLSSISN-LVPIITPPQGFHISYKILFQINALLQHG 306
            P F +    Y E  A  F++ +GSS SS +N LVP++ PP GF + ++ILF++N L+Q+ 
Sbjct: 241  PDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNA 300

Query: 307  YLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLP 366
             L GPALD +F+RL++  ++    +++ L+KLFHL ECCYEP  WL+ +Y  + S  +LP
Sbjct: 301  CLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLP 360

Query: 367  WKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDK 426
              P +SLDDGLVY++RVQ+TP +VYF GPE N+SNRV+RH+   ++NFLRVSFVDE+L+K
Sbjct: 361  LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 420

Query: 427  LHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASR 486
            + S+DLSPR+S +   RT++YDR+ SVLR+GIVIGDKKFEFLAFS+SQLRENS WMFA  
Sbjct: 421  VRSMDLSPRSSTQR--RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 480

Query: 487  KGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKIT 546
              ++AA IRAWMGDF  IRNVAKYAARLGQSF SSR TL V   EIEVI DVE+ +    
Sbjct: 481  DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 540

Query: 547  YCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSML 606
            Y FSDGIGKIS   A KVA KCGL   +PSAFQIRY GYKGVVA+DP S+KKLSLRKSM 
Sbjct: 541  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 600

Query: 607  KYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSR 666
            K+ S +T++DVL+WSKYQPC++NRQ+I LLSTLG+ D VF KKQ+E +D+LD+IL  P  
Sbjct: 601  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 660

Query: 667  ALEVLELMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGR 726
            A E L LM+PGE T+ILK L+L  YKP+ EPFL+MML+ FRA+KLL+LRTK+RIF+  GR
Sbjct: 661  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 720

Query: 727  TMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVK 786
            +MMGCLDETRTLEYGQV V  S P R     F++ G VVVAKNPCLHPGDVR+L AV+V 
Sbjct: 721  SMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNVP 780

Query: 787  ALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRL 846
            AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD EL   +  +PM Y P PT  L
Sbjct: 781  ALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQIL 840

Query: 847  DHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPK 906
            DHDVT+ EV+EY   Y+VND LG IANAHT FAD++P KA +  CI+LAK FS AVDFPK
Sbjct: 841  DHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPK 900

Query: 907  TGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVAT 966
            TGV A  P +L V+EYPDFMEKPDKPTY S  V+GKLFR VK+ +  + +++ F+ +VA+
Sbjct: 901  TGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVAS 960

Query: 967  KCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKR 1026
            K YD DMEVDGFE+Y+ EAF  KA YDFKLGNLMDYYGIKTE E++SG I+RM+KSF KR
Sbjct: 961  KSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKR 1020

Query: 1027 NDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYN 1086
             D E I  A+++LRKE  S FN      A +E++N   E AKASAWY VTYH  YWG YN
Sbjct: 1021 RDAESIGRAVRALRKETLSLFN------ASEEEEN---ESAKASAWYHVTYHSSYWGLYN 1080

[Close]

BLAST of Cp4.1LG13g06620 vs. Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 921.4 bits (2380), Expect = 9.4e-267
Identity = 459/734 (62.53%), Postives = 570/734 (77.66%), Query Frame = 1


Query: 367  VYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLSPRTSAENDL-RTRVYD 426
            VYF GPE N+SNRVVR+F  D++NFLR+SFVDE+ +KL + DLSPR+++ +D  RT +Y 
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 427  RVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVA 486
            RVLSVL +GI IG K FEFLAFS+SQLR+NS WMFASR+GL+A+DIR WMGDFR IRNVA
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 487  KYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKC 546
            KYAARLGQSF SS  TL V+++E+E ISD++   N   + FSDGIGKIS   A +VA KC
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKC 188

Query: 547  GLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFL 606
             L    PSAFQIRY GYKGVVA+DPTS  KLSLRKSMLK+ S +  VDVL++SKYQP FL
Sbjct: 189  NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248

Query: 607  NRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLL 666
            NRQ+I LLSTLG++D VF +KQ+EA++QL+ ++ DP  A+E +ELM  GE+T+ +KELLL
Sbjct: 249  NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308

Query: 667  L-YKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCS 726
              Y+P++EP+L+M+L+TFRA+KLL+L+TKSRI +PKGR MMGCLDETRTL+YGQVF+  +
Sbjct: 309  CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368

Query: 727  LPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHMVDCVVFPQKGERPHPNE 786
              G +    F V GKVV+AKNPCLHPGD+R+L AVDV  LHHM +CVVFPQ+G RPHPNE
Sbjct: 369  -SGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNE 428

Query: 787  CSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGL 846
            CSGSDLDGD+YFV WDP L   + V PM Y PAPT  LDHDVT+ EV+EY   Y+VN+ L
Sbjct: 429  CSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESL 488

Query: 847  GGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEK 906
            G IANAH VFAD++  KA ++ CI+LAKLFSIAVDFPKTGVPA  P  L V+EYPDFMEK
Sbjct: 489  GMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEK 548

Query: 907  PDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEY 966
             DK TY S GV+GKL+R +K        ++ F+REVA + YD DM VDG+EDY++EA   
Sbjct: 549  LDKVTYESKGVIGKLYREIK---KHTPHIKHFTREVARRSYDTDMIVDGYEDYITEAMAL 608

Query: 967  KARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFN 1026
            K  YDFKLGNLMD+YGIK+E E+ISG IL+MAK+F K++D + I LA++SLRKEARS F+
Sbjct: 609  KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFS 668

Query: 1027 EKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQI 1086
            E    S  D     D   AKASAWY VTYHP++WG YNEG +R HF+SFPWC+ +KL++I
Sbjct: 669  E---MSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLLRI 728

Query: 1087 KREKTCLVNFSPVL 1099
            K+ +  +    P L
Sbjct: 729  KQRRKFVRKMQPEL 732

[Close]

BLAST of Cp4.1LG13g06620 vs. Swiss-Prot
Match: RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)

HSP 1 Score: 749.2 bits (1933), Expect = 6.4e-215
Identity = 455/1140 (39.91%), Postives = 652/1140 (57.19%), Query Frame = 1


Query: 3    TTNDMGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTS 62
            TTN    T++I   P  + ADE+  F+E H G+ TV  + I    D      FA V+FT+
Sbjct: 6    TTNR--STVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTT 65

Query: 63   KLGGEYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVS 122
             L  +      +++ +L F +  L+  +   +I      R     +R++++ +  G   S
Sbjct: 66   -LEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDI----IPRPVDPRKRLDDIVLTVGFPES 125

Query: 123  KEEMKVIWKGEKWS-VEYGIGV--RKLGFYLSYEGVEYKMELCFENI------------- 182
             E  K     EKW  V   I    R++ F++   G  YK+E+ FE+I             
Sbjct: 126  DE--KRFCALEKWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDAS 185

Query: 183  ------LGLQGAPRIFKKAPLSSSSRLSSE------ESTGFRWIRDVDFTPSSCIGQSFA 242
                  L L+  P++FK+  +  +++  S+      E   F WIR  DF+ S  IG S  
Sbjct: 186  EIDAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTC 245

Query: 243  LCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPP-QGFHISYKIL 302
             CLE+ +G  +   F  L  Y+E         G + +S + +VP++     G    Y+IL
Sbjct: 246  FCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEIL 305

Query: 303  FQINALLQHGYLP-GPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQ 362
            FQ+NAL+    +    A D E  +++      +  V   L KL      CY+P  ++K Q
Sbjct: 306  FQLNALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQ 365

Query: 363  YLSFYSS-KQLPWKPNVSL-DDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDN 422
              S     K  P      L +  ++   R  +TP+K+Y  GPE   +N VV++F + V +
Sbjct: 366  MQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSD 425

Query: 423  FLRVSFVDEELDKLHSIDLSPRTSAE---NDLRTRVYDRVLSVLRNGIVIGDKKFEFLAF 482
            F+RV+FV+E+  KL +  LS  +         RT +Y+RVLS+L  GI +G K+FEFLAF
Sbjct: 426  FMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAF 485

Query: 483  SASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQH 542
            SASQLR NS WMFAS + + A DIR WMG FR+IR+++K AAR+GQ F +SR+TL V   
Sbjct: 486  SASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQ 545

Query: 543  EIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVA 602
            ++E I D+EV T+   YCFSDGIGKIS   A++VA+KCGL SH PSAFQIRY GYKGV+A
Sbjct: 546  DVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIA 605

Query: 603  IDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQ 662
            +D +S +KLSLR SMLK+ S +  ++V  W++  PCFLNR++I LLSTLGI+D +F   Q
Sbjct: 606  VDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQ 665

Query: 663  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAK 722
               +  L ++LED   AL VL+ +S     ++L ++LL  Y P+ EP+L+MMLR    ++
Sbjct: 666  AVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQ 725

Query: 723  LLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPG------------RSSESNF 782
            L +L+++ RI VPKGR ++GC+DE   LEYGQV+V  +L              +  E   
Sbjct: 726  LSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETS 785

Query: 783  VVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHM--VDCVVFPQKGERPHPNECSGSDLDG 842
            VV GKVVV KNPCLHPGD+R+LDA+          +DC++FPQKGERPHPNECSG DLDG
Sbjct: 786  VVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDG 845

Query: 843  DLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHT 902
            D +FV WD ++   +   PM Y  +    +DHDVT+ E+ ++ V YM++D LG I+ AH 
Sbjct: 846  DQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHL 905

Query: 903  VFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVS 962
            V AD+ P+KA + +C++LA L S AVDF KTG PA  P+ L+ RE+PDF+E+ +KPTY+S
Sbjct: 906  VHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYIS 965

Query: 963  NGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKL 1022
              V GKL+R VK   S +   +  +    T  YD  +E  GFE ++  A  ++  Y  KL
Sbjct: 966  ESVFGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKL 1025

Query: 1023 GNLMDYYGIKTEPELISGNI----LRMAKSFDKRNDM-EQISLAMKSLRKEARSWFNEKG 1082
             +LM YYG   E E+++G +    + +A+   +  DM ++I+L++K L KEA  WF    
Sbjct: 1026 TSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF---- 1085

Query: 1083 SKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKRE 1088
             KS  DE   K      ASAWY VTY+P      N   ++  FLSFPW V D L+ IK E
Sbjct: 1086 EKSCEDEQQKK----KLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAE 1116

[Close]

BLAST of Cp4.1LG13g06620 vs. Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 728.4 bits (1879), Expect = 1.2e-208
Identity = 411/994 (41.35%), Postives = 593/994 (59.66%), Query Frame = 1


Query: 142  GVRKLGFYLSYEGVEYKMELCFEN---------------ILGLQGAPRIFK--KAPLSSS 201
            G R++  YL ++   YK+E+ FE+               +L L  APRI      P  +S
Sbjct: 140  GKRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTLDGMGAILLQLNYAPRIHTAISGPAVNS 199

Query: 202  SRLSS-----EESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSFFQTLVGYKESY 261
              +       +E   F W+R +DFTP+   G+   L L+L     +    ++L  +  + 
Sbjct: 200  RFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLP-FSGNL 259

Query: 262  APFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGPALDNEFFRLVD 321
                +++   + + SN+VP++  P+ + + Y++LF++N+L+  G +    ++ + F+ + 
Sbjct: 260  GELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQ 319

Query: 322  PSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNVSLDDG---LVY 381
                  D      +K+  L+  CY P ++++Q+  S   S  +    N    +G   L+ 
Sbjct: 320  --ELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLS-NEGEGEGERKLMK 379

Query: 382  VHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLSPRTSA- 441
             +RV ITP+K++  GPE  ++N VV+H      +F+RV+FVDE+  KL S  +S R    
Sbjct: 380  CYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQG 439

Query: 442  --ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIRA 501
                  +T +Y R+LS+L+ G  IG K FEFLAFSASQLR NS WMFAS   L+A  IR 
Sbjct: 440  FFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRR 499

Query: 502  WMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDGIGKI 561
            WMG F  IR+V+K AAR+GQ F SSR+T  V + ++EVI D+E+ T+   Y FSDGIGKI
Sbjct: 500  WMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKI 559

Query: 562  SGTLAEKVAEKCGLI-SHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLDTQV 621
            S   A++VA   GL  ++ PSAFQIRY GYKGV+AIDP S+  LSLR SM K+ S    +
Sbjct: 560  SLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRML 619

Query: 622  DVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLELMS 681
            ++ SWSK QPC++NR++I+LLSTLGI+D +FV  Q++ + + + +L +   AL VL  + 
Sbjct: 620  NITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLG 679

Query: 682  PGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDETR 741
              E  + +K LL  Y+P+ EP+L+M+L+  +  +L D+RT+ +I VPKGR ++GCLDET 
Sbjct: 680  GSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETG 739

Query: 742  TLEYGQVFVHCSLPGR----SSESNF--------VVKGKVVVAKNPCLHPGDVRLLDAVD 801
             LEYGQV++  +   +    S++S F         V GKV + KNPCLHPGD+R+L+A+ 
Sbjct: 740  VLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIY 799

Query: 802  VKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTM 861
               L  MVDC+VFPQ+GERPHPNECSG DLDGDLYF+ WD +L   K   PM Y      
Sbjct: 800  DPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPR 859

Query: 862  RLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDF 921
             +DH VT+ E+Q++ V YM+ND LG I+ AH + AD+ P KA + EC++LA L S+AVDF
Sbjct: 860  IMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDF 919

Query: 922  PKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFR---GVKDVSSDVNTVEIFS 981
             KTG PA  P  LR REYPDFME+ +KP Y+SNGVLGKL+R   G  + S D   +   S
Sbjct: 920  AKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSS 979

Query: 982  REVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAK 1041
             +  +  YDPD+EV G +++L  A EY   Y+ KL  LM+YY  + E E+++GNI R   
Sbjct: 980  AQ-PSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNI-RNKM 1039

Query: 1042 SFDKRND------MEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRV 1086
             + KR++       ++I  A+ +L +EAR W       S  +ED ++      ASAWYRV
Sbjct: 1040 LYLKRDNKRYFEMKDRIVAAVDALHREARGWL----LSSRKEEDASR-----MASAWYRV 1099

[Close]

BLAST of Cp4.1LG13g06620 vs. Swiss-Prot
Match: SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.7e-162
Identity = 366/943 (38.81%), Postives = 521/943 (55.25%), Query Frame = 1


Query: 197  WIRDVDFTPSSCIGQSFALCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLS----- 256
            WIR  D TPS  IG+       +S   +        + Y       I+  G         
Sbjct: 270  WIRTTDITPSGAIGRCGVY--RISFSARFWPKMDRALDYMRERRVAIVDCGGGWGPRRGL 329

Query: 257  SISNLVPIITPPQGFH--------ISYKILFQINALLQHGYLPGPALDNEFFRLVDPSRF 316
            ++ + +    P Q           + + +LF +NAL+  G +    L  EFF L+  S  
Sbjct: 330  TVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEE 389

Query: 317  RSDYV---EYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRV 376
              +     ++  DK F + + C   +K L +   +    K L  K    + D    V R+
Sbjct: 390  NVNVAALRDFWGDK-FPVFDACGRLKKALNRVARN---PKLLCSK----VGDDHAEVRRL 449

Query: 377  QITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLSPRTSA-ENDL 436
             ITPT+ Y   PE   SNRV+RH+ +  D FLRV+F+DE +  L++  L+  T+    DL
Sbjct: 450  VITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDL 509

Query: 437  -------RTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIR 496
                   +T VY RV  +L  G  +  +K+ FLAFS++QLR+ S W FA  +  +   IR
Sbjct: 510  MSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIR 569

Query: 497  AWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDGIGK 556
             WMG F   +NVAK+AAR+GQ F S+  T+ +   E++   D  V      Y FSDGIGK
Sbjct: 570  KWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNE---YIFSDGIGK 629

Query: 557  ISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAI--DPTSTKKLSLRKSMLKYTSLDT 616
            I+  LA +VAE+  L  + PSA+QIR+AG+KGV+A+        +L LR SM K+ S   
Sbjct: 630  ITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHL 689

Query: 617  QVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLEL 676
             ++V+SW+K+QP FLNRQ+I LLS+L + D +F + Q+  +  L++IL D   A EVL  
Sbjct: 690  VLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTT 749

Query: 677  MSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDE 736
                +  +    L   ++P  EP L  ML   R+A+L DL  K+RIFVPKGR +MGCLDE
Sbjct: 750  SCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDE 809

Query: 737  TRTLEYGQVFVHCSLPGRSS-------------ESNFVVKGKVVVAKNPCLHPGDVRLLD 796
               LE GQ F+  ++P  +S             ++  V+ G VV+AKNPCLHPGDVR+L+
Sbjct: 810  LGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILE 869

Query: 797  AVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVK----PMS 856
            AVDV  LHH+VDC+VFPQKGERPH NE SGSDLDGDLYFV WD +L  I P K    PM 
Sbjct: 870  AVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKL--IPPGKKSWNPMD 929

Query: 857  YEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKL 916
            Y P    +L   V+  ++ ++ +K M+++ LG I NAH V AD     AM  +CI LA+L
Sbjct: 930  YSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAEL 989

Query: 917  FSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTV 976
             + AVDFPKTG  A  P +L+ + YPDFM K D  +Y S  +LG+L+R +++ S+     
Sbjct: 990  AATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNG---- 1049

Query: 977  EIFSREVATK---CYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISG 1036
            ++ S+EV T     YD D+EV G  D+L+ A++ K  YD +L  L+  Y ++TE EL++G
Sbjct: 1050 DVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTG 1109

Query: 1037 NILRMAKSFDKRND--MEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEY-AKASA 1086
            +I  + K+  K+     +++  A  +LRKE +S F    S      DD K+  Y  KASA
Sbjct: 1110 HITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASA 1169

[Close]

BLAST of Cp4.1LG13g06620 vs. TrEMBL
Match: A0A0S1YCZ4_CUCSA (RNA-dependent RNA polymerase 1c OS=Cucumis sativus GN=RDR1c PE=2 SV=1)

HSP 1 Score: 1785.0 bits (4622), Expect = 0.0e+00
Identity = 889/1109 (80.16%), Postives = 964/1109 (86.93%), Query Frame = 1


Query: 7    MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
            MGKTIEI+GF  QVTADEVKEF+ENHTGDGTV TVRISKP DEKARFT  TV F SKL  
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 67   EYVVAQAAAEKR-LWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEE 126
            EY+VA++  E+R LWF S YLKAR++E+ +       V  E+ERME+V    G+++S  +
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVL-EMERMEDVKGHLGSMISNGK 120

Query: 127  MKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILG----------------- 186
            M+VIW+GEKWSVE+G G RKL FYLSYE  EYKMELCFENIL                  
Sbjct: 121  MRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ 180

Query: 187  LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSF 246
            LQGAPRIF+K P SSSS L S +ST FRWIRDVDFTPSSCIGQSF +CL+LS    LP F
Sbjct: 181  LQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPF 240

Query: 247  FQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGP 306
            FQTLVGYK +YAPFILH GSSL S SNLVPIITPPQ F ISYKILF+INALLQHGYL GP
Sbjct: 241  FQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGP 300

Query: 307  ALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNV 366
             LD+EFFRLVD SRF SDY+E+AL+KLF+LKECCY+PQKWLK QYLS+Y+S QLPWK N+
Sbjct: 301  TLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNI 360

Query: 367  SLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSID 426
            SLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FI D+DNFLRVSFVDEELDKLHSID
Sbjct: 361  SLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSID 420

Query: 427  LSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLS 486
            L+PR+S+ EN  RTRVYDRV+S+L+NGIVIG+KKFEFLAFSASQLRENS WMFASR+GLS
Sbjct: 421  LAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLS 480

Query: 487  AADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFS 546
            AADIR WMGDF  IRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE   I YCFS
Sbjct: 481  AADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFS 540

Query: 547  DGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTS 606
            DGIGKIS TLA+KVAEKCGL SHTPSAFQIRYAGYKGVVAIDPTS KKLSLRKSMLKY S
Sbjct: 541  DGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMS 600

Query: 607  LDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEV 666
            LDTQ+DVL WSKYQPCFLNRQVINLLSTLGI+D VFVKKQKEAIDQLDSILEDPSRALEV
Sbjct: 601  LDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEV 660

Query: 667  LELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGC 726
            LELMSPGEMTSILKELL  Y PN+EPFLNMMLRTFRA KLLDLRTKSRIFVPKGRTMMGC
Sbjct: 661  LELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGC 720

Query: 727  LDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHM 786
            LDET+TLEYGQVFVHCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVRLLDA+DVKALHHM
Sbjct: 721  LDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHM 780

Query: 787  VDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVT 846
            VDCVVFPQKG+RPHPNECSGSDLDGDLYFV WD ELT IK VKPMSY+PAPT++LDHDVT
Sbjct: 781  VDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVT 840

Query: 847  MGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPA 906
            + EVQEY   YMVNDGLG IANAHTVFAD+  KKAM+AECIKLAKLFSIAVDFPKTGVPA
Sbjct: 841  IEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPA 900

Query: 907  NFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDP 966
            N P NLRV EYPDFM+KP+K TYVSNGVLGKLFRGVKDVSSDV+  EIF+REVATKCYDP
Sbjct: 901  NLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDP 960

Query: 967  DMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQ 1026
            DMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGNIL+MAKSFDKR D+EQ
Sbjct: 961  DMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQ 1020

Query: 1027 ISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQR 1086
            I+ AMKSLRKE R WFNE  SKS YD+     +EYA+ASAWY VTYHPDYWG YNEG +R
Sbjct: 1021 IAFAMKSLRKEVRFWFNENESKSTYDD---IQDEYARASAWYCVTYHPDYWGCYNEGTKR 1080

Query: 1087 DHFLSFPWCVSDKLIQIKREKTCLVNFSP 1097
            DHFLSFPWCV+DKLIQIKREK  + N SP
Sbjct: 1081 DHFLSFPWCVADKLIQIKREKMSMRNSSP 1105

[Close]

BLAST of Cp4.1LG13g06620 vs. TrEMBL
Match: A0A0A0KRH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G564290 PE=4 SV=1)

HSP 1 Score: 1780.8 bits (4611), Expect = 0.0e+00
Identity = 888/1112 (79.86%), Postives = 965/1112 (86.78%), Query Frame = 1


Query: 7    MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
            MGKTIEI+GF  QVTADEVKEF+ENHTGDGTV TVRISKP DEKARFT  TV F SKL  
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 67   EYVVAQAAAEKR-LWFGSLYLKARKVEREIKTTAAARVHG--ELERMENVNVQWGNLVSK 126
            EY+VA++  E+R LWF S YLKAR++E   K   A    G  E+ERME+V    G+++S 
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELE---KAVVAKETKGVLEMERMEDVKGHLGSMISN 120

Query: 127  EEMKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILG--------------- 186
             +M+VIW+GEKWSVE+G G RKL FYLSYE  EYKMELCFENIL                
Sbjct: 121  GKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFL 180

Query: 187  --LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLP 246
              LQGAPRIF+K P SSSS L S +ST FRWIRDVDFTPSSCIGQSF +CL+LS    LP
Sbjct: 181  IQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLP 240

Query: 247  SFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLP 306
             FFQTLVGYK +YAPFILH GSSL S SNLVPIITPPQ F ISYKILF+INALLQHGYL 
Sbjct: 241  PFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLS 300

Query: 307  GPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKP 366
            GP LD+EFFRLVD SRF SDY+++AL+KLF+LKECCY+PQKWLK QYLS+Y+S QLPWK 
Sbjct: 301  GPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKS 360

Query: 367  NVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHS 426
            N+SLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FI D+DNFLRVSFVDEELDKLHS
Sbjct: 361  NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS 420

Query: 427  IDLSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKG 486
            IDL+PR+S+ EN  RTRVYDRV+SVL+NGIVIG+KKFEFLAFSASQLRENS WMFASR+G
Sbjct: 421  IDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREG 480

Query: 487  LSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYC 546
            LSAADIR WMGDF  IRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE   I YC
Sbjct: 481  LSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYC 540

Query: 547  FSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKY 606
            FSDGIGKIS TLA+KVAEKCGLI+HTPSAFQIRYAGYKGVVAIDPTS KKLSLR SMLKY
Sbjct: 541  FSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKY 600

Query: 607  TSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRAL 666
             SLDTQ+DVLSWSKYQPCFLNRQVINLLSTLGI D VFVKKQKEAIDQLDSILEDPSRAL
Sbjct: 601  MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRAL 660

Query: 667  EVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMM 726
            EVLELMSPGEMTSILKELL  Y PNEEPFLNMMLRTFRA KLLDL+TKSRIFVP+GRTM+
Sbjct: 661  EVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMI 720

Query: 727  GCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALH 786
            GCLDETRTLEYGQVFVHCS+P RSSE NFVVKGK+VVAKNPCLHPGDVR+LDAVDVKALH
Sbjct: 721  GCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALH 780

Query: 787  HMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHD 846
            HMVDCVVFPQKG+RPHPNECSGSDLDGDLYF  WD ELT IK VKPM+YEPAPT++L+HD
Sbjct: 781  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHD 840

Query: 847  VTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGV 906
            VT+ E+QEY   YMVNDG+G IANAHTVFAD+  KKAM+ ECIKLAKLFSIAVDFPKTGV
Sbjct: 841  VTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGV 900

Query: 907  PANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCY 966
            PAN P NLRV EYPDFM+KP+KPTYVSNGVLGKLFRGVKDVSSDVNT EIF+REVATK Y
Sbjct: 901  PANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYY 960

Query: 967  DPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDM 1026
            DPDMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGN+L+MAKSFDKRND+
Sbjct: 961  DPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDL 1020

Query: 1027 EQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGM 1086
            EQI+ AMKSLRKE RSWFNE  SK  YD+    ++EYAKASAWY VTYHPDYWG YNEGM
Sbjct: 1021 EQITFAMKSLRKEVRSWFNENESKFTYDD---IEDEYAKASAWYYVTYHPDYWGCYNEGM 1080

Query: 1087 QRDHFLSFPWCVSDKLIQIKREKTCLVNFSPV 1098
            QRDHFLSFPWCV+DKLIQIKR+K  L N  PV
Sbjct: 1081 QRDHFLSFPWCVADKLIQIKRDKMTLKNSYPV 1106

[Close]

BLAST of Cp4.1LG13g06620 vs. TrEMBL
Match: E5GB63_CUCME (RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 1602.4 bits (4148), Expect = 0.0e+00
Identity = 794/956 (83.05%), Postives = 851/956 (89.02%), Query Frame = 1


Query: 148  FYLSYEGVEYKMELCFENILGLQ-GAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPS 207
            F+LS+    +   L F ++L LQ  APRIF+K P SSSS L S ES  FRWIRDVDFTPS
Sbjct: 179  FFLSF----FSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPS 238

Query: 208  SCIGQSFALCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGF 267
            SCIGQSF LCL+ S    LP FFQTLVGYK +Y PFIL  GSS  S SNLVPIITPPQ F
Sbjct: 239  SCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAF 298

Query: 268  HISYKILFQINALLQHGYLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQ 327
             ISYKILF+INALLQ GYL GP LD+EFFRLVD SRF  DY+E+AL+KLF+LKECCY+PQ
Sbjct: 299  DISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQ 358

Query: 328  KWLKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFID 387
            KWLK QYLS+Y S QLPWKPNVSLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FID
Sbjct: 359  KWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFID 418

Query: 388  DVDNFLRVSFVDEELDKLHSIDLSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFL 447
            D+DNFLRVSFVDEELDKLHSIDL+PR+S+ EN+ RTRVYDRV+SVL+NGIVIGDKKFEFL
Sbjct: 419  DIDNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFL 478

Query: 448  AFSASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVE 507
            AFSASQLRENS WMFASRKGLSAADIR WMGDFRQIRNVAKYAARLGQSFGSSR+TLCV+
Sbjct: 479  AFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVK 538

Query: 508  QHEIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGV 567
            +HEIEVI DVEVE   I YCFSDGIGKIS TLA+KVA+KCGL  HTPSAFQIRYAGYKGV
Sbjct: 539  EHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGV 598

Query: 568  VAIDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVK 627
            VAIDPTS KKLSLRKSMLKY SLDTQ+DVL WSKYQPCFLNRQVINLLSTLGI D VFVK
Sbjct: 599  VAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVK 658

Query: 628  KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAA 687
            KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELL  Y PNEEPFLNMML TFRA 
Sbjct: 659  KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRAN 718

Query: 688  KLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKN 747
            KLLDL+TKSRIFVP+GRTMMGCLDETRTLEYGQVFVHCS+PGRSSE NFVVKGKVVVAKN
Sbjct: 719  KLLDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKN 778

Query: 748  PCLHPGDVRLLDAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTR 807
            PCLHPGDVRLLDA+DVKALHHMVDCVVFPQKG+RPHPNECSGSDLDGDLYFV WD ELT 
Sbjct: 779  PCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTC 838

Query: 808  IKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTA 867
            IK VKPMSYEPAP+++LDHDVT+ EVQ+Y   YMVNDGLG IANAHTVFAD+  KKAM+A
Sbjct: 839  IKQVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSA 898

Query: 868  ECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKD 927
            ECIKLAKLFSIAVDFPKTGVPAN P NLRV EYPDFM+KPDKPTYVSNGVLGKLFRGVKD
Sbjct: 899  ECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKD 958

Query: 928  VSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEP 987
            VSSDVNT EIF++EVATKCYDPDMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEP
Sbjct: 959  VSSDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEP 1018

Query: 988  ELISGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKA 1047
            EL+SGNIL+MAKSFDKRND+EQI+ AMKSLRKE RSWFNE  SK  Y  +D +D+EYA+A
Sbjct: 1019 ELVSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTY--EDIEDDEYARA 1078

Query: 1048 SAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKTCLVNFSPVLTFQ 1102
            SAWY VTYHPDYWGRYNEG QRDHFLSFPWCV+DKLIQIKREK  L N SP+ + Q
Sbjct: 1079 SAWYCVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQ 1128

[Close]

BLAST of Cp4.1LG13g06620 vs. TrEMBL
Match: B9HJH7_POPTR (RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s13550g PE=4 SV=1)

HSP 1 Score: 1317.8 bits (3409), Expect = 0.0e+00
Identity = 663/1130 (58.67%), Postives = 826/1130 (73.10%), Query Frame = 1


Query: 7    MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
            M KT+++ GFP+  TA  V+ F+E+HTG GTV  ++I +     AR  +A V+FT+    
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGAR-KYAIVQFTTTRAA 60

Query: 67   EYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEEM 126
            E +++   A  RLW+G  YL AR ++R+I     + +H     ME+V + +G   SKE+ 
Sbjct: 61   EQIIS--LANPRLWYGHSYLNARPMDRDIIPQPRSFLH----TMESVTLHFGYQTSKEKF 120

Query: 127  KVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENI-----------------LGL 186
              +W G   SV +G+G+RKL F+LS+   EYK+ L FENI                 + L
Sbjct: 121  SAVWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQL 180

Query: 187  QGAPRIFKKAPLSSSSRLSSEESTGFR------WIRDVDFTPSSCIGQSFALCLELSHGD 246
             GAPRI+++   SSS+         FR      W+R  DFTPS  IG S +LCLEL +  
Sbjct: 181  YGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHL 240

Query: 247  QLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHG 306
            QLP+F +    YKE+   F+L +G + S   +LVPI+ P  G ++ Y ILF++N L+Q+G
Sbjct: 241  QLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNG 300

Query: 307  YLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLP 366
             L G  LD+ F+RLVDP+R     +EYAL+KL+HLKECCYEP KW  +QY  + +S   P
Sbjct: 301  CLAGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPP 360

Query: 367  WKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDK 426
              P +SLD GLVYV++VQITP KV+F GPE N+SNRV+R + +D+DNFLRVSFVDEEL+K
Sbjct: 361  RSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEK 420

Query: 427  LHSIDLSPRTSAENDLR-TRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFAS 486
            +HS D+SPRTS+ N+LR T +Y+R+LS L+NGIVIGDKKFEFLAFS+SQLRENSCWMFAS
Sbjct: 421  IHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFAS 480

Query: 487  RKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKI 546
            R GL+AADIRAWMG F +IRNVA+YAARLGQSFGSS  TL V  HEIE+I D+EV     
Sbjct: 481  RLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGT 540

Query: 547  TYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSM 606
             Y FSDGIGKIS   A KVA KCG    TPSAFQIRYAGYKGVVA+DPTS+KKLSLR+SM
Sbjct: 541  RYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSM 600

Query: 607  LKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPS 666
             KY S +T++DVL+ SKYQPCFLNRQ+I LLSTLG+ D  F +KQ+EA+DQLD++L DP 
Sbjct: 601  FKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPL 660

Query: 667  RALEVLELMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKG 726
            RA E LELMSPGE T+ILKE+LL  Y+P+ EPFL+MML+TFRA+KLL+LRTK+RIF+P G
Sbjct: 661  RAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 720

Query: 727  RTMMGCLDETRTLEYGQVFVHCS-------------LPGRSSESNFVVKGKVVVAKNPCL 786
            R+MMGCLDETRTLE+GQVFV  S                R     +++KG VVVAKNPCL
Sbjct: 721  RSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCL 780

Query: 787  HPGDVRLLDAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKP 846
            HPGD+R+L AVDV ALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPEL   + 
Sbjct: 781  HPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQ 840

Query: 847  VKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECI 906
            + PM Y P P ++LDHDVT+ EV+EY   Y+VND LG IANAHT  AD++  KAM+  C+
Sbjct: 841  ISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCV 900

Query: 907  KLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSS 966
            +LA+ FSIAVDFPKTGVPA  P NLR REYPDFMEKPDKP+Y S  V+GKLFR VKD++ 
Sbjct: 901  ELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAP 960

Query: 967  DVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELI 1026
              +++  F+ +VA +CYDPDMEVDGFEDY+ +AF YK+ YD+KLGNLM+YYGIKTE EL+
Sbjct: 961  RTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELL 1020

Query: 1027 SGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAW 1086
            SG+ ++M+KSF K+ D E I +A++SL+KEARSWFNEKGS      D   D+  AKASAW
Sbjct: 1021 SGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGS----GLDSQADDVDAKASAW 1080

Query: 1087 YRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKTCLVNFSPVL 1099
            Y VTYH +YWG YNEGM RDHFLSFPWCV DKLIQIKR  +  +  S +L
Sbjct: 1081 YHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLIL 1119

[Close]

BLAST of Cp4.1LG13g06620 vs. TrEMBL
Match: F6HFC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05870 PE=4 SV=1)

HSP 1 Score: 1303.5 bits (3372), Expect = 0.0e+00
Identity = 664/1114 (59.61%), Postives = 829/1114 (74.42%), Query Frame = 1


Query: 7    MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
            MGKTI+++G P+ V+A+E+KEF+E +TG+GT+  + I +P    +  T A V+FTS    
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS-MTHAKVQFTSLRLA 60

Query: 67   EYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEEM 126
            E +++ A   K+LW+G  YLKAR+++ +I       +H     M+ + + +G  +S E  
Sbjct: 61   ELIISLA---KQLWYGGNYLKAREMDLDIIPKPRTFLHS----MDRITLHFGYQMSNERF 120

Query: 127  KVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGLQ---------------- 186
             V+WK    SV++G G+RK  F+LS+   EYK+EL  ENI  +Q                
Sbjct: 121  CVLWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQL 180

Query: 187  -GAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSFF 246
              AP+I++K     S+    +E+   +W+R++DFTPS  IGQS ALCLEL HG QLP+F 
Sbjct: 181  LDAPQIYEK---DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFC 240

Query: 247  QTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGPA 306
            +    YKE+   FIL +G+S S   +LVPI+ PPQG ++ +KILF+IN L+Q+G L GP 
Sbjct: 241  ENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPT 300

Query: 307  LDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNVS 366
            LD  FFR VDP R    ++E+AL+KL++L+ECCYEP +WL +QY + Y SKQ+   P +S
Sbjct: 301  LDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRT-YISKQVAGSPAIS 360

Query: 367  LDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDL 426
            LD GLVYV RVQITP KVYF GPE N+SNRV+R++ +D+DNFLRVSF+DE  +K+HS  +
Sbjct: 361  LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVI 420

Query: 427  SPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAA 486
            SPR S E   RT VY R+LS+L+NGIVIGDKKF+FLA S+SQLR+NS WMFASR GL+AA
Sbjct: 421  SPRMSNEGR-RTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAA 480

Query: 487  DIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDG 546
            DIR+ MGDF QIRNVAKYAARLGQSF SS+ TL V +HEIE+I D+E   +  TY FSDG
Sbjct: 481  DIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDG 540

Query: 547  IGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLD 606
            IGKIS  LA +VA KCG  + TPSAFQIRY GYKGVVA+DPTS++KLSLRKSM KY S +
Sbjct: 541  IGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESEN 600

Query: 607  TQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLE 666
            T +DVLSWSKY+PCFLNRQ+I LLSTLG+KD VF KKQ+EA+DQLD+IL+DP RA E LE
Sbjct: 601  TNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALE 660

Query: 667  LMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCL 726
            LMSPGE T+ILKE+L+  YKP+ EPFL+MML+TFRAAKLL+LRTK+RIFVP GR+MMGCL
Sbjct: 661  LMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCL 720

Query: 727  DETRTLEYGQVFVHCSLPGR--------------SSESNFVVKGKVVVAKNPCLHPGDVR 786
            DETRTLEYG+VFV  S  G               S   NF+++GKVVVAKNPCLHPGDVR
Sbjct: 721  DETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVR 780

Query: 787  LLDAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSY 846
            +L AVDV ALHHMVDCVVFPQKG RPHP+ECSGSDLDGD+YFV WD +L   + + PM Y
Sbjct: 781  ILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDY 840

Query: 847  EPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLF 906
             PAPT  LDHDV + EV+EY   Y+ ND LG IANAHTVFAD++  KA+   C +LAKLF
Sbjct: 841  TPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLF 900

Query: 907  SIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVE 966
            SIA++FPKTGVPA  P +L V+EYPDFMEK +KPTY S  V+GKLFR VKDV+     V 
Sbjct: 901  SIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVR 960

Query: 967  IFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILR 1026
             F+R+VA + YD DMEVDGFEDY+ +AF YK++YDFKLG+LMD  GI+TE E++SG+I++
Sbjct: 961  SFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMK 1020

Query: 1027 MAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYH 1086
            M+KSFDKR D E I+LA++SLRKEAR+WFN+ GS +    DD     YA ASAWY VTYH
Sbjct: 1021 MSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADD----VYAIASAWYHVTYH 1080

Query: 1087 PDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREK 1089
            P YWG YNEGM  DHFLSFPWCV DKLIQIKR+K
Sbjct: 1081 PYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDK 1097

[Close]

BLAST of Cp4.1LG13g06620 vs. TAIR10
Match: AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)

HSP 1 Score: 1222.6 bits (3162), Expect = 0.0e+00
Identity = 630/1104 (57.07%), Postives = 798/1104 (72.28%), Query Frame = 1


Query: 7    MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
            MGKTI++FGFP  V+A+EVK+F+E  TG GTV  +++ +P     R  +A V+FTS+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPR-VYAIVQFTSERHT 60

Query: 67   EYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEEM 126
              ++  AA  +RL++G  YLKA +VE++I     A +H     +  + + +G  VS ++ 
Sbjct: 61   RLIITAAA--ERLYYGRSYLKAFEVEQDIVPKPRASLH----TISGLKMFFGCQVSTKKF 120

Query: 127  KVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGLQ---------------- 186
              +W  +   V +GIG+RKL F  S+   +Y++EL +ENI  +                 
Sbjct: 121  LTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 180

Query: 187  -GAPRIFKKA--PLSSSSRLSSEESTGF--RWIRDVDFTPSSCIGQSFALCLELSHGDQL 246
             GAP+IF+K   P++    +    S G   +WIR  DFT SSCIGQS A CLEL     +
Sbjct: 181  IGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 240

Query: 247  PSFFQTLVGYKESYAP-FILHTGSSLSSISN-LVPIITPPQGFHISYKILFQINALLQHG 306
            P F +    Y E  A  F++ +GSS SS +N LVP++ PP GF + ++ILF++N L+Q+ 
Sbjct: 241  PDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNA 300

Query: 307  YLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLP 366
             L GPALD +F+RL++  ++    +++ L+KLFHL ECCYEP  WL+ +Y  + S  +LP
Sbjct: 301  CLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLP 360

Query: 367  WKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDK 426
              P +SLDDGLVY++RVQ+TP +VYF GPE N+SNRV+RH+   ++NFLRVSFVDE+L+K
Sbjct: 361  LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 420

Query: 427  LHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASR 486
            + S+DLSPR+S +   RT++YDR+ SVLR+GIVIGDKKFEFLAFS+SQLRENS WMFA  
Sbjct: 421  VRSMDLSPRSSTQR--RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 480

Query: 487  KGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKIT 546
              ++AA IRAWMGDF  IRNVAKYAARLGQSF SSR TL V   EIEVI DVE+ +    
Sbjct: 481  DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 540

Query: 547  YCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSML 606
            Y FSDGIGKIS   A KVA KCGL   +PSAFQIRY GYKGVVA+DP S+KKLSLRKSM 
Sbjct: 541  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 600

Query: 607  KYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSR 666
            K+ S +T++DVL+WSKYQPC++NRQ+I LLSTLG+ D VF KKQ+E +D+LD+IL  P  
Sbjct: 601  KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 660

Query: 667  ALEVLELMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGR 726
            A E L LM+PGE T+ILK L+L  YKP+ EPFL+MML+ FRA+KLL+LRTK+RIF+  GR
Sbjct: 661  AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 720

Query: 727  TMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVK 786
            +MMGCLDETRTLEYGQV V  S P R     F++ G VVVAKNPCLHPGDVR+L AV+V 
Sbjct: 721  SMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNVP 780

Query: 787  ALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRL 846
            AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD EL   +  +PM Y P PT  L
Sbjct: 781  ALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQIL 840

Query: 847  DHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPK 906
            DHDVT+ EV+EY   Y+VND LG IANAHT FAD++P KA +  CI+LAK FS AVDFPK
Sbjct: 841  DHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPK 900

Query: 907  TGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVAT 966
            TGV A  P +L V+EYPDFMEKPDKPTY S  V+GKLFR VK+ +  + +++ F+ +VA+
Sbjct: 901  TGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVAS 960

Query: 967  KCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKR 1026
            K YD DMEVDGFE+Y+ EAF  KA YDFKLGNLMDYYGIKTE E++SG I+RM+KSF KR
Sbjct: 961  KSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKR 1020

Query: 1027 NDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYN 1086
             D E I  A+++LRKE  S FN      A +E++N   E AKASAWY VTYH  YWG YN
Sbjct: 1021 RDAESIGRAVRALRKETLSLFN------ASEEEEN---ESAKASAWYHVTYHSSYWGLYN 1080

[Close]

BLAST of Cp4.1LG13g06620 vs. TAIR10
Match: AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)

HSP 1 Score: 749.2 bits (1933), Expect = 3.6e-216
Identity = 455/1140 (39.91%), Postives = 652/1140 (57.19%), Query Frame = 1


Query: 3    TTNDMGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTS 62
            TTN    T++I   P  + ADE+  F+E H G+ TV  + I    D      FA V+FT+
Sbjct: 6    TTNR--STVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTT 65

Query: 63   KLGGEYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVS 122
             L  +      +++ +L F +  L+  +   +I      R     +R++++ +  G   S
Sbjct: 66   -LEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDI----IPRPVDPRKRLDDIVLTVGFPES 125

Query: 123  KEEMKVIWKGEKWS-VEYGIGV--RKLGFYLSYEGVEYKMELCFENI------------- 182
             E  K     EKW  V   I    R++ F++   G  YK+E+ FE+I             
Sbjct: 126  DE--KRFCALEKWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDAS 185

Query: 183  ------LGLQGAPRIFKKAPLSSSSRLSSE------ESTGFRWIRDVDFTPSSCIGQSFA 242
                  L L+  P++FK+  +  +++  S+      E   F WIR  DF+ S  IG S  
Sbjct: 186  EIDAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTC 245

Query: 243  LCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPP-QGFHISYKIL 302
             CLE+ +G  +   F  L  Y+E         G + +S + +VP++     G    Y+IL
Sbjct: 246  FCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEIL 305

Query: 303  FQINALLQHGYLP-GPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQ 362
            FQ+NAL+    +    A D E  +++      +  V   L KL      CY+P  ++K Q
Sbjct: 306  FQLNALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQ 365

Query: 363  YLSFYSS-KQLPWKPNVSL-DDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDN 422
              S     K  P      L +  ++   R  +TP+K+Y  GPE   +N VV++F + V +
Sbjct: 366  MQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSD 425

Query: 423  FLRVSFVDEELDKLHSIDLSPRTSAE---NDLRTRVYDRVLSVLRNGIVIGDKKFEFLAF 482
            F+RV+FV+E+  KL +  LS  +         RT +Y+RVLS+L  GI +G K+FEFLAF
Sbjct: 426  FMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAF 485

Query: 483  SASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQH 542
            SASQLR NS WMFAS + + A DIR WMG FR+IR+++K AAR+GQ F +SR+TL V   
Sbjct: 486  SASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQ 545

Query: 543  EIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVA 602
            ++E I D+EV T+   YCFSDGIGKIS   A++VA+KCGL SH PSAFQIRY GYKGV+A
Sbjct: 546  DVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIA 605

Query: 603  IDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQ 662
            +D +S +KLSLR SMLK+ S +  ++V  W++  PCFLNR++I LLSTLGI+D +F   Q
Sbjct: 606  VDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQ 665

Query: 663  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLL-YKPNEEPFLNMMLRTFRAAK 722
               +  L ++LED   AL VL+ +S     ++L ++LL  Y P+ EP+L+MMLR    ++
Sbjct: 666  AVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQ 725

Query: 723  LLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPG------------RSSESNF 782
            L +L+++ RI VPKGR ++GC+DE   LEYGQV+V  +L              +  E   
Sbjct: 726  LSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETS 785

Query: 783  VVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHM--VDCVVFPQKGERPHPNECSGSDLDG 842
            VV GKVVV KNPCLHPGD+R+LDA+          +DC++FPQKGERPHPNECSG DLDG
Sbjct: 786  VVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDG 845

Query: 843  DLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHT 902
            D +FV WD ++   +   PM Y  +    +DHDVT+ E+ ++ V YM++D LG I+ AH 
Sbjct: 846  DQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHL 905

Query: 903  VFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVS 962
            V AD+ P+KA + +C++LA L S AVDF KTG PA  P+ L+ RE+PDF+E+ +KPTY+S
Sbjct: 906  VHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYIS 965

Query: 963  NGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKL 1022
              V GKL+R VK   S +   +  +    T  YD  +E  GFE ++  A  ++  Y  KL
Sbjct: 966  ESVFGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKL 1025

Query: 1023 GNLMDYYGIKTEPELISGNI----LRMAKSFDKRNDM-EQISLAMKSLRKEARSWFNEKG 1082
             +LM YYG   E E+++G +    + +A+   +  DM ++I+L++K L KEA  WF    
Sbjct: 1026 TSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF---- 1085

Query: 1083 SKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKRE 1088
             KS  DE   K      ASAWY VTY+P      N   ++  FLSFPW V D L+ IK E
Sbjct: 1086 EKSCEDEQQKK----KLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAE 1116

[Close]

BLAST of Cp4.1LG13g06620 vs. TAIR10
Match: AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)

HSP 1 Score: 569.7 bits (1467), Expect = 3.9e-162
Identity = 391/1075 (36.37%), Postives = 570/1075 (53.02%), Query Frame = 1


Query: 109  RMENVNVQWGNLVSKEEMKVIWKGEKWSVEYGIG---------VRKLGFYLSYEGV---- 168
            ++  + ++ G LVS+++  V W+ E   V++ +           RK   +   + V    
Sbjct: 131  KLAGITLEIGTLVSRDDFFVSWRAE--GVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAV 190

Query: 169  ---EYKMELC---------------FENILGLQGAPRIFKKAPLSS------SSRLSSEE 228
               +YK+EL                F  IL L  +PR++ +              L  ++
Sbjct: 191  INCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTVPGDLLDDDD 250

Query: 229  STGFRWIRDVDFTPSSCIGQ--SFALCLELSHGDQLPS---FFQTLVGYKES--YAPFIL 288
                 WIR  DFT    IG+  S+ + +   + ++L +   +F+     +E   + P I 
Sbjct: 251  P----WIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIR 310

Query: 289  HTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGPALDNEFFRLVDPSRFR 348
            +       +S+    I   +G  IS++I+F +N++L  G      L   FF L+     R
Sbjct: 311  NEPCFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLL-----R 370

Query: 349  SDYVEYALDKLFHL---KECCYEPQKWLKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRVQ 408
            +   +  +  L HL   K   ++  K LK        + +L      S D  +  + R+ 
Sbjct: 371  NQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSED--ISEIRRLV 430

Query: 409  ITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLS--------PRT 468
            ITPT+ Y   PE  LSNRV+R +    + FLRV+F+DE +  ++S  LS          T
Sbjct: 431  ITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLT 490

Query: 469  SAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIRA 528
            S+    +T V+ RV S+L +G  +  +K+ FLAFSA+QLR+ S W FA       +DI+ 
Sbjct: 491  SSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKT 550

Query: 529  WMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEV-ISDVEVETNKITYCFSDGIGK 588
            WMG F+  +NVAK AAR+G  F S+  T+ V  HE++  + D+E    +  Y FSDGIG 
Sbjct: 551  WMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGT 610

Query: 589  ISGTLAEKVAEKCGL-ISHTPSAFQIRYAGYKGVVAIDPTSTK--KLSLRKSMLKYTSLD 648
            I+  LA++V EK  L + ++P A+QIRYAG+KGVVA  P+ +   +L+LR SM K+ S  
Sbjct: 611  ITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKH 670

Query: 649  TQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLE 708
            T +++ SW+++QP FLNRQ+I LLS LG+ D +F   Q+  + +L+ IL+D   A EVL 
Sbjct: 671  TILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLT 730

Query: 709  LMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLD 768
                 +  +    L   +KP  EP L  ML + R A+L  LR KSRIFV  GR +MGCLD
Sbjct: 731  ASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLD 790

Query: 769  ETRTLEYGQVFVHCSLP----------GRSSESNF---VVKGKVVVAKNPCLHPGDVRLL 828
            E   LE+GQ F+  S P           R  E+     VVKG V +AKNPCLHPGDVR+L
Sbjct: 791  EAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRIL 850

Query: 829  DAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPEL--TRIKPVKPMSY 888
            +AVDV  LHHM DC++FPQKG+RPH NE SGSDLDGDLYFV WD +L     K    M Y
Sbjct: 851  EAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHY 910

Query: 889  EPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLF 948
            + A    L   V   ++ ++  + + N+ LG I NAH V AD+    AM  EC+ LA+L 
Sbjct: 911  DAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELA 970

Query: 949  SIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDV-SSDVNTV 1008
            + AVDFPKTG   + P +L+ + YPDFM K D  TY SN +LG+L+R VK+V   D    
Sbjct: 971  ATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEAS 1030

Query: 1009 EIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNIL 1068
               S + +   YD  +E+ GFED + EA+ +K  YD +L  L+  Y ++ E E+++G+I 
Sbjct: 1031 SEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIW 1090

Query: 1069 RMAKSFDKRND--MEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEY-AKASAWYR 1098
             M K   K+     E++  +  SL+KE R  F E         ++ K+  Y  KASAWY 
Sbjct: 1091 SMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYH 1150

[Close]

BLAST of Cp4.1LG13g06620 vs. TAIR10
Match: AT2G19930.1 (AT2G19930.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 123.6 bits (309), Expect = 7.4e-28
Identity = 165/688 (23.98%), Postives = 282/688 (40.99%), Query Frame = 1


Query: 323 YEPQKW--LKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRVQITPTKVY-------FRGPE 382
           YE   W  L + Y      + L W      D G  + ++  + P   Y        +GP 
Sbjct: 174 YEAAVWDRLGRHYCPQKDRRMLQW------DSGKTHYYQCNVAPNGSYTFKVLSALQGPL 233

Query: 383 ANLSNRVVRHFIDDVDNFLRVSFVD-EELDKLHSID--LSPRTSAENDLRTRVYDRVLSV 442
              +   +   + D DN L V F D ++    +SID   + +  A+N +   +      V
Sbjct: 234 LEHTGTHLHKVLGD-DNVLTVKFADVQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFV 293

Query: 443 LRNGIVIGDKK-FEFLAFSASQLRENSCWMFASRK-----GLSAADIRAWMGDFRQIRNV 502
            ++G     KK           +R +S   +  +      G S  + R       +   +
Sbjct: 294 FKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTL 353

Query: 503 AKYAARLGQSFGSSRRTLCVEQHEI--EVISDVE---------VETNKITYCFSDGIGKI 562
           A Y AR      S  +TL V+   I  + I D+          ++ NK     SDG G I
Sbjct: 354 ANYMARFSLIL-SKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYI 413

Query: 563 SGTLA---------------EKVAEKCGLISHTPSAFQIRYAGY--KGVVAIDPT-STKK 622
           S  LA               E + E C         F++ Y GY  KG   ++     + 
Sbjct: 414 SEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRT 473

Query: 623 LSLRKSMLK---------YTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKK 682
           + +R SM+K         +++ +    V + +  +   L++ ++ LLS  GI +  F+  
Sbjct: 474 VQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDI 533

Query: 683 QKEAIDQLDSILEDPSRALEVLELMSPGEMTSI-LKELLLLYKPNEEPFLNMMLRTFRAA 742
               +++  SI  +   AL     ++ GEM      +++L+  P +EP L   L      
Sbjct: 534 LLNTLEESKSIFYNKRAALNAA--LNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILLKT 593

Query: 743 KLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKN 802
           +  DL+   ++ V +   +MG +D T  L+  +V V           +  + G+V+V +N
Sbjct: 594 EKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILE--------SGQISGEVLVYRN 653

Query: 803 PCLHPGDVRLLDAVDVKALHHMVD----CVVFPQKGERPHPNECSGSDLDGDLYFVGWDP 862
           P LH GD+ +L A  VKAL   V      V FPQKG R   +E +G D DGD+YF+  +P
Sbjct: 654 PGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNP 713

Query: 863 E-LTRIKPVKPMSYEPAPTM----RLDHDVTMGEVQEYLVKYMVNDG------LGGIANA 922
           E L   KP +P      P+     R    ++  E++E L +  +  G      +G  A++
Sbjct: 714 ELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADS 773

Query: 923 HTVFADQ---------KPKKAMTAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDF 930
                D+         + K  M  + ++L  ++  A+D PK G     P+ L+   +P +
Sbjct: 774 WLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHY 833

[Close]

BLAST of Cp4.1LG13g06620 vs. TAIR10
Match: AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 118.6 bits (296), Expect = 2.4e-26
Identity = 115/448 (25.67%), Postives = 202/448 (45.09%), Query Frame = 1


Query: 555 FQIRYAGY--KGVVAIDPT-STKKLSLRKSMLKY------TSLDT--QVDVLSWSKY-QP 614
           F+I Y GY  KG    +     + + +R SM+K       ++L T   ++V++ S   + 
Sbjct: 455 FRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRK 514

Query: 615 CFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKE 674
             L+R ++ LLS  G+ +  F+   +  +++  +I      A +        + T+   +
Sbjct: 515 ARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTA---D 574

Query: 675 LLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVH 734
           ++L+  P +EP+L   L      +   L+   R  + +   +MG +D T  L+  ++ V 
Sbjct: 575 MILVGIPLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEICVI 634

Query: 735 CSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHMVD----CVVFPQKGE 794
                     +  + G V+V +NP LH GD+ +L A  VKAL   V      V FPQKG 
Sbjct: 635 LH--------SGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGP 694

Query: 795 RPHPNECSGSDLDGDLYFVGWDPE-LTRIKPVKPMSYEPAPTM----RLDHDVTMGEVQE 854
           R   +E +G D DGD+YF+  +P+ L   KP +P      P+     R   +++  E++E
Sbjct: 695 RSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEE 754

Query: 855 YLVK------YMVNDGLG-------GIANAHTVFADQ--KPKKAMTAECIKLAKLFSIAV 914
            L K      +   D +G       GI +      D+  K K       +KL  ++  A+
Sbjct: 755 ELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDAL 814

Query: 915 DFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGV------KDVSSDVNT 961
           D PK G   + P +L ++ +P +ME+  K  + S  +LG +F  V      +   S+++ 
Sbjct: 815 DAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISK 874

[Close]

BLAST of Cp4.1LG13g06620 vs. NCBI nr
Match: gi|948561979|gb|ALM88235.1| (RNA-dependent RNA polymerase 1c [Cucumis sativus])

HSP 1 Score: 1785.0 bits (4622), Expect = 0.0e+00
Identity = 889/1109 (80.16%), Postives = 964/1109 (86.93%), Query Frame = 1


Query: 7    MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
            MGKTIEI+GF  QVTADEVKEF+ENHTGDGTV TVRISKP DEKARFT  TV F SKL  
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 67   EYVVAQAAAEKR-LWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEE 126
            EY+VA++  E+R LWF S YLKAR++E+ +       V  E+ERME+V    G+++S  +
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVL-EMERMEDVKGHLGSMISNGK 120

Query: 127  MKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILG----------------- 186
            M+VIW+GEKWSVE+G G RKL FYLSYE  EYKMELCFENIL                  
Sbjct: 121  MRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ 180

Query: 187  LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSF 246
            LQGAPRIF+K P SSSS L S +ST FRWIRDVDFTPSSCIGQSF +CL+LS    LP F
Sbjct: 181  LQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPF 240

Query: 247  FQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGP 306
            FQTLVGYK +YAPFILH GSSL S SNLVPIITPPQ F ISYKILF+INALLQHGYL GP
Sbjct: 241  FQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGP 300

Query: 307  ALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNV 366
             LD+EFFRLVD SRF SDY+E+AL+KLF+LKECCY+PQKWLK QYLS+Y+S QLPWK N+
Sbjct: 301  TLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNI 360

Query: 367  SLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSID 426
            SLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FI D+DNFLRVSFVDEELDKLHSID
Sbjct: 361  SLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSID 420

Query: 427  LSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLS 486
            L+PR+S+ EN  RTRVYDRV+S+L+NGIVIG+KKFEFLAFSASQLRENS WMFASR+GLS
Sbjct: 421  LAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLS 480

Query: 487  AADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFS 546
            AADIR WMGDF  IRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE   I YCFS
Sbjct: 481  AADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFS 540

Query: 547  DGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTS 606
            DGIGKIS TLA+KVAEKCGL SHTPSAFQIRYAGYKGVVAIDPTS KKLSLRKSMLKY S
Sbjct: 541  DGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMS 600

Query: 607  LDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEV 666
            LDTQ+DVL WSKYQPCFLNRQVINLLSTLGI+D VFVKKQKEAIDQLDSILEDPSRALEV
Sbjct: 601  LDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEV 660

Query: 667  LELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGC 726
            LELMSPGEMTSILKELL  Y PN+EPFLNMMLRTFRA KLLDLRTKSRIFVPKGRTMMGC
Sbjct: 661  LELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGC 720

Query: 727  LDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHM 786
            LDET+TLEYGQVFVHCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVRLLDA+DVKALHHM
Sbjct: 721  LDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHM 780

Query: 787  VDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVT 846
            VDCVVFPQKG+RPHPNECSGSDLDGDLYFV WD ELT IK VKPMSY+PAPT++LDHDVT
Sbjct: 781  VDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVT 840

Query: 847  MGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPA 906
            + EVQEY   YMVNDGLG IANAHTVFAD+  KKAM+AECIKLAKLFSIAVDFPKTGVPA
Sbjct: 841  IEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPA 900

Query: 907  NFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDP 966
            N P NLRV EYPDFM+KP+K TYVSNGVLGKLFRGVKDVSSDV+  EIF+REVATKCYDP
Sbjct: 901  NLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDP 960

Query: 967  DMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQ 1026
            DMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGNIL+MAKSFDKR D+EQ
Sbjct: 961  DMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQ 1020

Query: 1027 ISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQR 1086
            I+ AMKSLRKE R WFNE  SKS YD+     +EYA+ASAWY VTYHPDYWG YNEG +R
Sbjct: 1021 IAFAMKSLRKEVRFWFNENESKSTYDD---IQDEYARASAWYCVTYHPDYWGCYNEGTKR 1080

Query: 1087 DHFLSFPWCVSDKLIQIKREKTCLVNFSP 1097
            DHFLSFPWCV+DKLIQIKREK  + N SP
Sbjct: 1081 DHFLSFPWCVADKLIQIKREKMSMRNSSP 1105

[Close]

BLAST of Cp4.1LG13g06620 vs. NCBI nr
Match: gi|778703938|ref|XP_011655453.1| (PREDICTED: probable RNA-dependent RNA polymerase 1 [Cucumis sativus])

HSP 1 Score: 1780.8 bits (4611), Expect = 0.0e+00
Identity = 888/1112 (79.86%), Postives = 965/1112 (86.78%), Query Frame = 1


Query: 7    MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
            MGKTIEI+GF  QVTADEVKEF+ENHTGDGTV TVRISKP DEKARFT  TV F SKL  
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 67   EYVVAQAAAEKR-LWFGSLYLKARKVEREIKTTAAARVHG--ELERMENVNVQWGNLVSK 126
            EY+VA++  E+R LWF S YLKAR++E   K   A    G  E+ERME+V    G+++S 
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELE---KAVVAKETKGVLEMERMEDVKGHLGSMISN 120

Query: 127  EEMKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILG--------------- 186
             +M+VIW+GEKWSVE+G G RKL FYLSYE  EYKMELCFENIL                
Sbjct: 121  GKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFL 180

Query: 187  --LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLP 246
              LQGAPRIF+K P SSSS L S +ST FRWIRDVDFTPSSCIGQSF +CL+LS    LP
Sbjct: 181  IQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLP 240

Query: 247  SFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLP 306
             FFQTLVGYK +YAPFILH GSSL S SNLVPIITPPQ F ISYKILF+INALLQHGYL 
Sbjct: 241  PFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLS 300

Query: 307  GPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKP 366
            GP LD+EFFRLVD SRF SDY+++AL+KLF+LKECCY+PQKWLK QYLS+Y+S QLPWK 
Sbjct: 301  GPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKS 360

Query: 367  NVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHS 426
            N+SLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FI D+DNFLRVSFVDEELDKLHS
Sbjct: 361  NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS 420

Query: 427  IDLSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKG 486
            IDL+PR+S+ EN  RTRVYDRV+SVL+NGIVIG+KKFEFLAFSASQLRENS WMFASR+G
Sbjct: 421  IDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREG 480

Query: 487  LSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYC 546
            LSAADIR WMGDF  IRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE   I YC
Sbjct: 481  LSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYC 540

Query: 547  FSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKY 606
            FSDGIGKIS TLA+KVAEKCGLI+HTPSAFQIRYAGYKGVVAIDPTS KKLSLR SMLKY
Sbjct: 541  FSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKY 600

Query: 607  TSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRAL 666
             SLDTQ+DVLSWSKYQPCFLNRQVINLLSTLGI D VFVKKQKEAIDQLDSILEDPSRAL
Sbjct: 601  MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRAL 660

Query: 667  EVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMM 726
            EVLELMSPGEMTSILKELL  Y PNEEPFLNMMLRTFRA KLLDL+TKSRIFVP+GRTM+
Sbjct: 661  EVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMI 720

Query: 727  GCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALH 786
            GCLDETRTLEYGQVFVHCS+P RSSE NFVVKGK+VVAKNPCLHPGDVR+LDAVDVKALH
Sbjct: 721  GCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALH 780

Query: 787  HMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHD 846
            HMVDCVVFPQKG+RPHPNECSGSDLDGDLYF  WD ELT IK VKPM+YEPAPT++L+HD
Sbjct: 781  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHD 840

Query: 847  VTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGV 906
            VT+ E+QEY   YMVNDG+G IANAHTVFAD+  KKAM+ ECIKLAKLFSIAVDFPKTGV
Sbjct: 841  VTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGV 900

Query: 907  PANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCY 966
            PAN P NLRV EYPDFM+KP+KPTYVSNGVLGKLFRGVKDVSSDVNT EIF+REVATK Y
Sbjct: 901  PANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYY 960

Query: 967  DPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDM 1026
            DPDMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGN+L+MAKSFDKRND+
Sbjct: 961  DPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDL 1020

Query: 1027 EQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGM 1086
            EQI+ AMKSLRKE RSWFNE  SK  YD+    ++EYAKASAWY VTYHPDYWG YNEGM
Sbjct: 1021 EQITFAMKSLRKEVRSWFNENESKFTYDD---IEDEYAKASAWYYVTYHPDYWGCYNEGM 1080

Query: 1087 QRDHFLSFPWCVSDKLIQIKREKTCLVNFSPV 1098
            QRDHFLSFPWCV+DKLIQIKR+K  L N  PV
Sbjct: 1081 QRDHFLSFPWCVADKLIQIKRDKMTLKNSYPV 1106

[Close]

BLAST of Cp4.1LG13g06620 vs. NCBI nr
Match: gi|700196297|gb|KGN51474.1| (hypothetical protein Csa_5G564290 [Cucumis sativus])

HSP 1 Score: 1780.8 bits (4611), Expect = 0.0e+00
Identity = 888/1112 (79.86%), Postives = 965/1112 (86.78%), Query Frame = 1


Query: 7    MGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66
            MGKTIEI+GF  QVTADEVKEF+ENHTGDGTV TVRISKP DEKARFT  TV F SKL  
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 67   EYVVAQAAAEKR-LWFGSLYLKARKVEREIKTTAAARVHG--ELERMENVNVQWGNLVSK 126
            EY+VA++  E+R LWF S YLKAR++E   K   A    G  E+ERME+V    G+++S 
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELE---KAVVAKETKGVLEMERMEDVKGHLGSMISN 120

Query: 127  EEMKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILG--------------- 186
             +M+VIW+GEKWSVE+G G RKL FYLSYE  EYKMELCFENIL                
Sbjct: 121  GKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFL 180

Query: 187  --LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLP 246
              LQGAPRIF+K P SSSS L S +ST FRWIRDVDFTPSSCIGQSF +CL+LS    LP
Sbjct: 181  IQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLP 240

Query: 247  SFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLP 306
             FFQTLVGYK +YAPFILH GSSL S SNLVPIITPPQ F ISYKILF+INALLQHGYL 
Sbjct: 241  PFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLS 300

Query: 307  GPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKP 366
            GP LD+EFFRLVD SRF SDY+++AL+KLF+LKECCY+PQKWLK QYLS+Y+S QLPWK 
Sbjct: 301  GPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKS 360

Query: 367  NVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHS 426
            N+SLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FI D+DNFLRVSFVDEELDKLHS
Sbjct: 361  NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS 420

Query: 427  IDLSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKG 486
            IDL+PR+S+ EN  RTRVYDRV+SVL+NGIVIG+KKFEFLAFSASQLRENS WMFASR+G
Sbjct: 421  IDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREG 480

Query: 487  LSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYC 546
            LSAADIR WMGDF  IRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE   I YC
Sbjct: 481  LSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYC 540

Query: 547  FSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKY 606
            FSDGIGKIS TLA+KVAEKCGLI+HTPSAFQIRYAGYKGVVAIDPTS KKLSLR SMLKY
Sbjct: 541  FSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKY 600

Query: 607  TSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRAL 666
             SLDTQ+DVLSWSKYQPCFLNRQVINLLSTLGI D VFVKKQKEAIDQLDSILEDPSRAL
Sbjct: 601  MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRAL 660

Query: 667  EVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMM 726
            EVLELMSPGEMTSILKELL  Y PNEEPFLNMMLRTFRA KLLDL+TKSRIFVP+GRTM+
Sbjct: 661  EVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMI 720

Query: 727  GCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALH 786
            GCLDETRTLEYGQVFVHCS+P RSSE NFVVKGK+VVAKNPCLHPGDVR+LDAVDVKALH
Sbjct: 721  GCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALH 780

Query: 787  HMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHD 846
            HMVDCVVFPQKG+RPHPNECSGSDLDGDLYF  WD ELT IK VKPM+YEPAPT++L+HD
Sbjct: 781  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHD 840

Query: 847  VTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGV 906
            VT+ E+QEY   YMVNDG+G IANAHTVFAD+  KKAM+ ECIKLAKLFSIAVDFPKTGV
Sbjct: 841  VTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGV 900

Query: 907  PANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCY 966
            PAN P NLRV EYPDFM+KP+KPTYVSNGVLGKLFRGVKDVSSDVNT EIF+REVATK Y
Sbjct: 901  PANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYY 960

Query: 967  DPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDM 1026
            DPDMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGN+L+MAKSFDKRND+
Sbjct: 961  DPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDL 1020

Query: 1027 EQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGM 1086
            EQI+ AMKSLRKE RSWFNE  SK  YD+    ++EYAKASAWY VTYHPDYWG YNEGM
Sbjct: 1021 EQITFAMKSLRKEVRSWFNENESKFTYDD---IEDEYAKASAWYYVTYHPDYWGCYNEGM 1080

Query: 1087 QRDHFLSFPWCVSDKLIQIKREKTCLVNFSPV 1098
            QRDHFLSFPWCV+DKLIQIKR+K  L N  PV
Sbjct: 1081 QRDHFLSFPWCVADKLIQIKRDKMTLKNSYPV 1106

[Close]

BLAST of Cp4.1LG13g06620 vs. NCBI nr
Match: gi|307135834|gb|ADN33705.1| (RNA-dependent RNA polymerase [Cucumis melo subsp. melo])

HSP 1 Score: 1602.4 bits (4148), Expect = 0.0e+00
Identity = 794/956 (83.05%), Postives = 851/956 (89.02%), Query Frame = 1


Query: 148  FYLSYEGVEYKMELCFENILGLQ-GAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPS 207
            F+LS+    +   L F ++L LQ  APRIF+K P SSSS L S ES  FRWIRDVDFTPS
Sbjct: 179  FFLSF----FSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPS 238

Query: 208  SCIGQSFALCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGF 267
            SCIGQSF LCL+ S    LP FFQTLVGYK +Y PFIL  GSS  S SNLVPIITPPQ F
Sbjct: 239  SCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAF 298

Query: 268  HISYKILFQINALLQHGYLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQ 327
             ISYKILF+INALLQ GYL GP LD+EFFRLVD SRF  DY+E+AL+KLF+LKECCY+PQ
Sbjct: 299  DISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQ 358

Query: 328  KWLKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFID 387
            KWLK QYLS+Y S QLPWKPNVSLDDGLVYVHRVQITP KVYF GPEANLSNRVVR FID
Sbjct: 359  KWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFID 418

Query: 388  DVDNFLRVSFVDEELDKLHSIDLSPRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFL 447
            D+DNFLRVSFVDEELDKLHSIDL+PR+S+ EN+ RTRVYDRV+SVL+NGIVIGDKKFEFL
Sbjct: 419  DIDNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFL 478

Query: 448  AFSASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVE 507
            AFSASQLRENS WMFASRKGLSAADIR WMGDFRQIRNVAKYAARLGQSFGSSR+TLCV+
Sbjct: 479  AFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVK 538

Query: 508  QHEIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGV 567
            +HEIEVI DVEVE   I YCFSDGIGKIS TLA+KVA+KCGL  HTPSAFQIRYAGYKGV
Sbjct: 539  EHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGV 598

Query: 568  VAIDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVK 627
            VAIDPTS KKLSLRKSMLKY SLDTQ+DVL WSKYQPCFLNRQVINLLSTLGI D VFVK
Sbjct: 599  VAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVK 658

Query: 628  KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAA 687
            KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELL  Y PNEEPFLNMML TFRA 
Sbjct: 659  KQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRAN 718

Query: 688  KLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKN 747
            KLLDL+TKSRIFVP+GRTMMGCLDETRTLEYGQVFVHCS+PGRSSE NFVVKGKVVVAKN
Sbjct: 719  KLLDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKN 778

Query: 748  PCLHPGDVRLLDAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTR 807
            PCLHPGDVRLLDA+DVKALHHMVDCVVFPQKG+RPHPNECSGSDLDGDLYFV WD ELT 
Sbjct: 779  PCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTC 838

Query: 808  IKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTA 867
            IK VKPMSYEPAP+++LDHDVT+ EVQ+Y   YMVNDGLG IANAHTVFAD+  KKAM+A
Sbjct: 839  IKQVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSA 898

Query: 868  ECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKD 927
            ECIKLAKLFSIAVDFPKTGVPAN P NLRV EYPDFM+KPDKPTYVSNGVLGKLFRGVKD
Sbjct: 899  ECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKD 958

Query: 928  VSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEP 987
            VSSDVNT EIF++EVATKCYDPDMEVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEP
Sbjct: 959  VSSDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEP 1018

Query: 988  ELISGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKA 1047
            EL+SGNIL+MAKSFDKRND+EQI+ AMKSLRKE RSWFNE  SK  Y  +D +D+EYA+A
Sbjct: 1019 ELVSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTY--EDIEDDEYARA 1078

Query: 1048 SAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKTCLVNFSPVLTFQ 1102
            SAWY VTYHPDYWGRYNEG QRDHFLSFPWCV+DKLIQIKREK  L N SP+ + Q
Sbjct: 1079 SAWYCVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQ 1128

[Close]

BLAST of Cp4.1LG13g06620 vs. NCBI nr
Match: gi|659074597|ref|XP_008437690.1| (PREDICTED: probable RNA-dependent RNA polymerase 1, partial [Cucumis melo])

HSP 1 Score: 1600.5 bits (4143), Expect = 0.0e+00
Identity = 787/932 (84.44%), Postives = 839/932 (90.02%), Query Frame = 1


Query: 171  GAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSFFQ 230
            GAPRIF+K P SSSS L S ES  FRWIRDVDFTPSSCIGQSF LCL+ S    LP FFQ
Sbjct: 1    GAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQ 60

Query: 231  TLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGPAL 290
            TLVGYK +Y PFIL  GSS  S SNLVPIITPPQ F ISYKILF+INALLQ GYL GP L
Sbjct: 61   TLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTL 120

Query: 291  DNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNVSL 350
            D+EFFRLVD SRF  DY+E+AL+KLF+LKECCY+PQKWLK QYLS+Y S QLPWKPNVSL
Sbjct: 121  DDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSL 180

Query: 351  DDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLS 410
            DDGLVYVHRVQITP KVYF GPEANLSNRVVR FIDD+DNFLRVSFVDEELDKLHSIDL+
Sbjct: 181  DDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLA 240

Query: 411  PRTSA-ENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAA 470
            PR+S+ EN+ RTRVYDRV+SVL+NGIVIGDKKFEFLAFSASQLRENS WMFASRKGLSAA
Sbjct: 241  PRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAA 300

Query: 471  DIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDG 530
            DIR WMGDFRQIRNVAKYAARLGQSFGSSR+TLCV++HEIEVI DVEVE   I YCFSDG
Sbjct: 301  DIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDG 360

Query: 531  IGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLD 590
            IGKIS TLA+KVA+KCGL  HTPSAFQIRYAGYKGVVAIDPTS KKLSLRKSMLKY SLD
Sbjct: 361  IGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLD 420

Query: 591  TQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLE 650
            TQ+DVL WSKYQPCFLNRQVINLLSTLGI D VFVKKQKEAIDQLDSILEDPSRALEVLE
Sbjct: 421  TQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLE 480

Query: 651  LMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLD 710
            LMSPGEMTSILKELL  Y PNEEPFLNMML TFRA KLLDL+TKSRIFVP+GRTMMGCLD
Sbjct: 481  LMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLD 540

Query: 711  ETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHMVD 770
            ETRTLEYGQVFVHCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVRLLDA+DVKALHHMVD
Sbjct: 541  ETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVD 600

Query: 771  CVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVTMG 830
            CVVFPQKG+RPHPNECSGSDLDGDLYFV WD ELT IK VKPMSYEPAP+++LDHDVT+ 
Sbjct: 601  CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIE 660

Query: 831  EVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPANF 890
            EVQ+Y   YMVNDGLG IANAHTVFAD+  KKAM+AECIKLAKLFSIAVDFPKTGVPAN 
Sbjct: 661  EVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANL 720

Query: 891  PHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDM 950
            P NLRV EYPDFM+KPDKPTYVSNGVLGKLFRGVKDVSSDVNT EIF++EVATKCYDPDM
Sbjct: 721  PRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDM 780

Query: 951  EVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQIS 1010
            EVDGFE YL EAF+YK +YDFKLGNLMDYYGIKTEPEL+SGNIL+MAKSFDKRND+EQI+
Sbjct: 781  EVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIA 840

Query: 1011 LAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQRDH 1070
             AMKSLRKE RSWFNE  SK  Y  +D +D+EYA+ASAWY VTYHPDYWGRYNEG QRDH
Sbjct: 841  FAMKSLRKEVRSWFNENESKYTY--EDIEDDEYARASAWYCVTYHPDYWGRYNEGTQRDH 900

Query: 1071 FLSFPWCVSDKLIQIKREKTCLVNFSPVLTFQ 1102
            FLSFPWCV+DKLIQIKREK  L N SP+ + Q
Sbjct: 901  FLSFPWCVADKLIQIKREKMSLRNSSPMSSLQ 930

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g06620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDR1_ARATH	0.0e+00	57.07	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1	[more]
RDR1_ORYSJ	9.4e-267	62.53	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 ...	[more]
RDR2_ARATH	6.4e-215	39.91	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1	[more]
RDR2_ORYSJ	1.2e-208	41.35	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 ...	[more]
SHL2_ORYSJ	1.7e-162	38.81	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SH...	[more]

BLAST of Cp4.1LG13g06620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S1YCZ4_CUCSA	0.0e+00	80.16	RNA-dependent RNA polymerase 1c OS=Cucumis sativus GN=RDR1c PE=2 SV=1	[more]
A0A0A0KRH3_CUCSA	0.0e+00	79.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G564290 PE=4 SV=1	[more]
E5GB63_CUCME	0.0e+00	83.05	RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
B9HJH7_POPTR	0.0e+00	58.67	RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s...	[more]
F6HFC8_VITVI	0.0e+00	59.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05870 PE=4 SV=...	[more]

BLAST of Cp4.1LG13g06620 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14790.1	0.0e+00	57.07	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	3.6e-216	39.91	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	3.9e-162	36.37	RNA-dependent RNA polymerase 6	[more]
AT2G19930.1	7.4e-28	23.98	RNA-dependent RNA polymerase family protein	[more]
AT2G19910.1	2.4e-26	25.67	RNA-dependent RNA polymerase family protein	[more]

BLAST of Cp4.1LG13g06620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|948561979\|gb\|ALM88235.1\|	0.0e+00	80.16	RNA-dependent RNA polymerase 1c [Cucumis sativus]	[more]
gi\|778703938\|ref\|XP_011655453.1\|	0.0e+00	79.86	PREDICTED: probable RNA-dependent RNA polymerase 1 [Cucumis sativus]	[more]
gi\|700196297\|gb\|KGN51474.1\|	0.0e+00	79.86	hypothetical protein Csa_5G564290 [Cucumis sativus]	[more]
gi\|307135834\|gb\|ADN33705.1\|	0.0e+00	83.05	RNA-dependent RNA polymerase [Cucumis melo subsp. melo]	[more]
gi\|659074597\|ref\|XP_008437690.1\|	0.0e+00	84.44	PREDICTED: probable RNA-dependent RNA polymerase 1, partial [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003968	RNA-directed RNA polymerase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR007855	RNA-dep_RNA_pol_euk-typ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0006952	defense response
biological_process	GO:0001172	transcription, RNA-templated
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0051707	response to other organism
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0007165	signal transduction
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0048519	negative regulation of biological process
biological_process	GO:0045087	innate immune response
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0071310	cellular response to organic substance
cellular_component	GO:0031379	RNA-directed RNA polymerase complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0003968	RNA-directed RNA polymerase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g06620.1	Cp4.1LG13g06620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 18..1088 score:
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 362..923 score: 9.2E
None	No IPR available	PANTHER	PTHR23079:SF9	RNA-DEPENDENT RNA POLYMERASE 1	coord: 18..1088 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG13g06620	Cucsa.012120	Cucumber (Gy14) v1	cgycpeB0520
Cp4.1LG13g06620	CmaCh15G009010	Cucurbita maxima (Rimu)	cmacpeB305
Cp4.1LG13g06620	CmaCh04G021320	Cucurbita maxima (Rimu)	cmacpeB705
Cp4.1LG13g06620	CmoCh04G022260	Cucurbita moschata (Rifu)	cmocpeB657
Cp4.1LG13g06620	CmoCh15G009380	Cucurbita moschata (Rifu)	cmocpeB268
Cp4.1LG13g06620	Cla003960	Watermelon (97103) v1	cpewmB184
Cp4.1LG13g06620	Csa5G564290	Cucumber (Chinese Long) v2	cpecuB189
Cp4.1LG13g06620	MELO3C005284	Melon (DHL92) v3.5.1	cpemeB157
Cp4.1LG13g06620	ClCG01G006600	Watermelon (Charleston Gray)	cpewcgB166
Cp4.1LG13g06620	CSPI05G19310	Wild cucumber (PI 183967)	cpecpiB191
Cp4.1LG13g06620	Lsi09G006800	Bottle gourd (USVL1VR-Ls)	cpelsiB130
Cp4.1LG13g06620	MELO3C005257.2	Melon (DHL92) v3.6.1	cpemedB184
Cp4.1LG13g06620	CsaV3_5G027970	Cucumber (Chinese Long) v3	cpecucB0229
Cp4.1LG13g06620	Bhi12G000832	Wax gourd	cpewgoB0220
Cp4.1LG13g06620	CsGy5G018660	Cucumber (Gy14) v2	cgybcpeB612
Cp4.1LG13g06620	Carg25244	Silver-seed gourd	carcpeB1227

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None