Csa5G564290 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G564290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRNA-dependent RNA polymerase; contains IPR007855 (RNA-dependent RNA polymerase, eukaryotic-type)
LocationChr5 : 19611078 .. 19615242 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTACTTTCAAAAACATGCAGCTGAAAAACAAATTGCTACAATACAATAAACAACGACATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCCAGGTGACCGCCGACGAGGTGAAAGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCAACGGTGCGGATTTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAACTGTGGTTCGAAAGTTCATATTTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAAGGAAACCAAGGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCACTTGGGAAGCATGATTTCGAACGGGAAAATGAGAGTGATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGATTTAGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTCGTTGCCCTCTCAACGAACCTTCCAAGTTTTTTCTCATTCAGGTTTCTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTCATTACTTAAATTCAACTAAAAAACAAAATATATATGATCTCCATGCATGTTAATGTGAATGTTATTAGGTTTGTTATATTATATTGAATTTTGTTTAAATTGTGTGCAGTTGCAGGGTGCTCCACGAATTTTCAGGAAAACTCCATCATCTTCCTCCTCACCATTATATTCCAACAAATCCACTAGTTTTCGTTGGATTAGGGATGTGGATTTCACTCCATCTTCCTGCATTGGACAATCCTTTACTATATGCCTCCAACTTTCTCCTTCACATCACCTTCCTCCTTTCTTCCAAACATTGGTTGGCTACAAAGTGACCTATGCTCCATTCATTCTCCATAAAGGTTCTTCTCTCGTTTCAAATTCAAATTTGGTTCCTATCATTACTCCACCCCAAGCTTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCCTCCTTCAACATGGTTATCTTTCTGGACCGACGCTAGATGATGAATTTTTTCGACTTGTTGATTCAAGTAGATTTCATTCTGACTACATTGACCACGCCTTAGAAAAACTGTTTAATTTGAAGGAATGTTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCATACTACACCTCTAATCAGCTTCCATGGAAATCTAATATTTCTCTAGATGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTACTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCGTTTTATTGGTGATATAGATAATTTTCTTCGTGTATCTTTTGTTGATGAGGAATTGGATAAACTTCATTCCATTGATCTAGCTCCACGTTCATCATCTCATGAAAATAGTCAAAGAACTAGAGTATATGATAGAGTAGTATCTGTGTTAAAAAATGGTATAGTCATTGGTAATAAAAAGTTTGAGTTTCTGGCTTTTTCGGCTAGTCAATTAAGGGAAAATTCTTTTTGGATGTTTGCTTCGAGGGAGGGGCTAAGTGCAGCAGATATCAGAGAATGGATGGGTGACTTTCATCATATAAGAAATGTGGCAAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCATCTAGAAAAACATTGTGTGTTGAAGAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAGGAAGAACATTATGTATTGTTTCTCTGATGGGATTGGAAAAATATCTAAAACACTAGCTAAGAAAGTTGCTGAAAAATGTGGTTTGATCAATCATACACCATCTGCCTTTCAGATTCGATATGCTGGATACAAAGGTGTTGTAGCTATTGACCCTACGTCAAAAAAGAAATTGTCATTACGAAATAGTATGTTGAAGTATATGTCACTCGATACACAACTTGATGTTTTGTCGTGGAGTAAGTATCAACCATGTTTTCTTAATCGCCAGGTGATAAACCTTTTATCAACTCTTGGAATTGGGGACGATGTTTTTGTAAAAAAACAAAAGGAGGCTATAGATCAACTAGATTCTATTTTGGAAGATCCATCAAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCTGGAGAAATGACTAGTATTTTGAAGGAACTACTTTCGTTTTACATGCCAAATGAAGAACCTTTTCTAAATATGATGTTGCGGACATTTCGAGCAAATAAATTGTTAGATTTAAAGACCAAGTCAAGGATATTTGTTCCGGAGGGAAGGACAATGATTGGTTGCCTGGATGAAACTCGAACACTAGAATATGGGCAAGTGTTTGTTCATTGCTCTGTCCCGCGAAGATCAAGCGAGGGTAATTTTGTAGTTAAGGGTAAAATAGTTGTTGCTAAAAATCCATGTTTACATCCGGGGGACGTGCGTGTGCTCGATGCTGTTGATGTGAAAGCTCTACATCACATGGTGGATTGTGTTGTTTTCCCACAGAAAGGAAAAAGGTAGGAAAGCTTACTATGTAGGAATTACTTATCTATTGGGTGTTTATCACATATCTATATTTGTTGCAAGTTCATTTATTTCATGTTTGCATGTAACTCATTTCTTAAAGATTTGTATTAAGTTACGTACATATATCCATTAGCTAGTCTATTTTTTGTAGCAATATTTTTTTTAATAGTTGTCCTTAACTAATATTTCAATATATTATATTAGGCCTCACCCAAACGAGTGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGCTTGTTGGGATTTGGAGCTAACTTGCATCAAACAAGTCAAACCTATGAACTACGAGCCTGCACCAACTATACAATTGAATCATGATGTCACAATTGAGGTGTGTTTTTAAGTTGTACTATGACTATTTCAAATATCTTCATCGATTGTTATTTTTGTATAAATAATAACATGCATGCATTTGTTTCGGATTAAAAGTTTACAAGAATTTTTTTATTCTACAATGAGTTTTAATTAAATATGATTATTTTGATATAGGAAATTCAAGAATATTTTGCCAATTACATGGTGAATGATGGTATTGGAGCCATTGCAAATGCCCACACTGTCTTTGCAGATAAGAACTCTAAGAAGGCAATGAGTGTTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCAAAGACTGGTGTGCCAGCAAACTTGCCACGCAACCTTCGTGTTCACGAGTATCCTGATTTCATGGACAAGCCCAATAAACCAACTTATGTATCAAATGGTGTTCTTGGGAAGCTTTTTAGAGGAGTGAAAGATGTTTCATCTGATGTCAACACCTTTGAAATTTTCACTAGGGAAGTTGCTACCAAGTACTACGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATCTAAGAGAAGCTTTTGATTACAAAACTAAGTACGACTTCAAATTGGGGAACCTTATGGATTATTATGGTATTAAAACAGAACCTGAATTAGTTAGTGGAAATGTCTTGAAGATGGCGAAGTCTTTTGATAAAAGGAATGACTTGGAACAAATTACCTTTGCTATGAAGTCTCTAAGAAAGGAGGTCAGGTCTTGGTTCAATGAGAATGAAAGTAAATTTACATACGACGACATTGAAGACGAATACGCAAAAGCATCCGCATGGTACTATGTCACATATCACCCAGATTATTGGGGTTGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAACTTATTCAAATCAAAAGAGATAAGATGACATTGAAGAATTCTTACCCAGTGTCATCATTATTCCACAATTTTGACGGGTGAGTTTGTACTAACTTTTGGAGGCCAAGCAATGTTTTGCATTATGATCATATTTATAATTTTAGCTTGTGAGATATACTATGTGTTAATATTGTAATTCTATAAATCTTTTTTAATAGGTGTTATATGCTTAAAAGAGATTGTGATGAGATGATCAAAAGGTTTGATGCCTCTGTATCCCTAATTTATATGTCCCTACTTAATGAGATGAATTTTAGAGTTTTCCGTATGAAATTGTATGCCTAA

mRNA sequence

ATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCCAGGTGACCGCCGACGAGGTGAAAGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCAACGGTGCGGATTTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAACTGTGGTTCGAAAGTTCATATTTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAAGGAAACCAAGGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCACTTGGGAAGCATGATTTCGAACGGGAAAATGAGAGTGATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGATTTAGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTCGTTGCCCTCTCAACGAACCTTCCAAGTTTTTTCTCATTCAGTTGCAGGGTGCTCCACGAATTTTCAGGAAAACTCCATCATCTTCCTCCTCACCATTATATTCCAACAAATCCACTAGTTTTCGTTGGATTAGGGATGTGGATTTCACTCCATCTTCCTGCATTGGACAATCCTTTACTATATGCCTCCAACTTTCTCCTTCACATCACCTTCCTCCTTTCTTCCAAACATTGGTTGGCTACAAAGTGACCTATGCTCCATTCATTCTCCATAAAGGTTCTTCTCTCGTTTCAAATTCAAATTTGGTTCCTATCATTACTCCACCCCAAGCTTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCCTCCTTCAACATGGTTATCTTTCTGGACCGACGCTAGATGATGAATTTTTTCGACTTGTTGATTCAAGTAGATTTCATTCTGACTACATTGACCACGCCTTAGAAAAACTGTTTAATTTGAAGGAATGTTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCATACTACACCTCTAATCAGCTTCCATGGAAATCTAATATTTCTCTAGATGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTACTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCGTTTTATTGGTGATATAGATAATTTTCTTCGTGTATCTTTTGTTGATGAGGAATTGGATAAACTTCATTCCATTGATCTAGCTCCACGTTCATCATCTCATGAAAATAGTCAAAGAACTAGAGTATATGATAGAGTAGTATCTGTGTTAAAAAATGGTATAGTCATTGGTAATAAAAAGTTTGAGTTTCTGGCTTTTTCGGCTAGTCAATTAAGGGAAAATTCTTTTTGGATGTTTGCTTCGAGGGAGGGGCTAAGTGCAGCAGATATCAGAGAATGGATGGGTGACTTTCATCATATAAGAAATGTGGCAAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCATCTAGAAAAACATTGTGTGTTGAAGAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAGGAAGAACATTATGTATTGTTTCTCTGATGGGATTGGAAAAATATCTAAAACACTAGCTAAGAAAGTTGCTGAAAAATGTGGTTTGATCAATCATACACCATCTGCCTTTCAGATTCGATATGCTGGATACAAAGGTGTTGTAGCTATTGACCCTACGTCAAAAAAGAAATTGTCATTACGAAATAGTATGTTGAAGTATATGTCACTCGATACACAACTTGATGTTTTGTCGTGGAGTAAGTATCAACCATGTTTTCTTAATCGCCAGGTGATAAACCTTTTATCAACTCTTGGAATTGGGGACGATGTTTTTGTAAAAAAACAAAAGGAGGCTATAGATCAACTAGATTCTATTTTGGAAGATCCATCAAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCTGGAGAAATGACTAGTATTTTGAAGGAACTACTTTCGTTTTACATGCCAAATGAAGAACCTTTTCTAAATATGATGTTGCGGACATTTCGAGCAAATAAATTGTTAGATTTAAAGACCAAGTCAAGGATATTTGTTCCGGAGGGAAGGACAATGATTGGTTGCCTGGATGAAACTCGAACACTAGAATATGGGCAAGTGTTTGTTCATTGCTCTGTCCCGCGAAGATCAAGCGAGGGTAATTTTGTAGTTAAGGGTAAAATAGTTGTTGCTAAAAATCCATGTTTACATCCGGGGGACGTGCGTGTGCTCGATGCTGTTGATGTGAAAGCTCTACATCACATGGTGGATTGTGTTGTTTTCCCACAGAAAGGAAAAAGGCCTCACCCAAACGAGTGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGCTTGTTGGGATTTGGAGCTAACTTGCATCAAACAAGTCAAACCTATGAACTACGAGCCTGCACCAACTATACAATTGAATCATGATGTCACAATTGAGGAAATTCAAGAATATTTTGCCAATTACATGGTGAATGATGGTATTGGAGCCATTGCAAATGCCCACACTGTCTTTGCAGATAAGAACTCTAAGAAGGCAATGAGTGTTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCAAAGACTGGTGTGCCAGCAAACTTGCCACGCAACCTTCGTGTTCACGAGTATCCTGATTTCATGGACAAGCCCAATAAACCAACTTATGTATCAAATGGTGTTCTTGGGAAGCTTTTTAGAGGAGTGAAAGATGTTTCATCTGATGTCAACACCTTTGAAATTTTCACTAGGGAAGTTGCTACCAAGTACTACGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATCTAAGAGAAGCTTTTGATTACAAAACTAAGTACGACTTCAAATTGGGGAACCTTATGGATTATTATGGTATTAAAACAGAACCTGAATTAGTTAGTGGAAATGTCTTGAAGATGGCGAAGTCTTTTGATAAAAGGAATGACTTGGAACAAATTACCTTTGCTATGAAGTCTCTAAGAAAGGAGGTCAGGTCTTGGTTCAATGAGAATGAAAGTAAATTTACATACGACGACATTGAAGACGAATACGCAAAAGCATCCGCATGGTACTATGTCACATATCACCCAGATTATTGGGGTTGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAACTTATTCAAATCAAAAGAGATAAGATGACATTGAAGAATTCTTACCCAGTGTCATCATTATTCCACAATTTTGACGGGTGTTATATGCTTAAAAGAGATTGTGATGAGATGATCAAAAGGTTTGATGCCTCTGTATCCCTAATTTATATGTCCCTACTTAATGAGATGAATTTTAGAGTTTTCCGTATGAAATTGTATGCCTAA

Coding sequence (CDS)

ATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCCAGGTGACCGCCGACGAGGTGAAAGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCAACGGTGCGGATTTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAACTGTGGTTCGAAAGTTCATATTTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAAGGAAACCAAGGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCACTTGGGAAGCATGATTTCGAACGGGAAAATGAGAGTGATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGATTTAGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTCGTTGCCCTCTCAACGAACCTTCCAAGTTTTTTCTCATTCAGTTGCAGGGTGCTCCACGAATTTTCAGGAAAACTCCATCATCTTCCTCCTCACCATTATATTCCAACAAATCCACTAGTTTTCGTTGGATTAGGGATGTGGATTTCACTCCATCTTCCTGCATTGGACAATCCTTTACTATATGCCTCCAACTTTCTCCTTCACATCACCTTCCTCCTTTCTTCCAAACATTGGTTGGCTACAAAGTGACCTATGCTCCATTCATTCTCCATAAAGGTTCTTCTCTCGTTTCAAATTCAAATTTGGTTCCTATCATTACTCCACCCCAAGCTTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCCTCCTTCAACATGGTTATCTTTCTGGACCGACGCTAGATGATGAATTTTTTCGACTTGTTGATTCAAGTAGATTTCATTCTGACTACATTGACCACGCCTTAGAAAAACTGTTTAATTTGAAGGAATGTTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCATACTACACCTCTAATCAGCTTCCATGGAAATCTAATATTTCTCTAGATGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTACTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCGTTTTATTGGTGATATAGATAATTTTCTTCGTGTATCTTTTGTTGATGAGGAATTGGATAAACTTCATTCCATTGATCTAGCTCCACGTTCATCATCTCATGAAAATAGTCAAAGAACTAGAGTATATGATAGAGTAGTATCTGTGTTAAAAAATGGTATAGTCATTGGTAATAAAAAGTTTGAGTTTCTGGCTTTTTCGGCTAGTCAATTAAGGGAAAATTCTTTTTGGATGTTTGCTTCGAGGGAGGGGCTAAGTGCAGCAGATATCAGAGAATGGATGGGTGACTTTCATCATATAAGAAATGTGGCAAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCATCTAGAAAAACATTGTGTGTTGAAGAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAGGAAGAACATTATGTATTGTTTCTCTGATGGGATTGGAAAAATATCTAAAACACTAGCTAAGAAAGTTGCTGAAAAATGTGGTTTGATCAATCATACACCATCTGCCTTTCAGATTCGATATGCTGGATACAAAGGTGTTGTAGCTATTGACCCTACGTCAAAAAAGAAATTGTCATTACGAAATAGTATGTTGAAGTATATGTCACTCGATACACAACTTGATGTTTTGTCGTGGAGTAAGTATCAACCATGTTTTCTTAATCGCCAGGTGATAAACCTTTTATCAACTCTTGGAATTGGGGACGATGTTTTTGTAAAAAAACAAAAGGAGGCTATAGATCAACTAGATTCTATTTTGGAAGATCCATCAAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCTGGAGAAATGACTAGTATTTTGAAGGAACTACTTTCGTTTTACATGCCAAATGAAGAACCTTTTCTAAATATGATGTTGCGGACATTTCGAGCAAATAAATTGTTAGATTTAAAGACCAAGTCAAGGATATTTGTTCCGGAGGGAAGGACAATGATTGGTTGCCTGGATGAAACTCGAACACTAGAATATGGGCAAGTGTTTGTTCATTGCTCTGTCCCGCGAAGATCAAGCGAGGGTAATTTTGTAGTTAAGGGTAAAATAGTTGTTGCTAAAAATCCATGTTTACATCCGGGGGACGTGCGTGTGCTCGATGCTGTTGATGTGAAAGCTCTACATCACATGGTGGATTGTGTTGTTTTCCCACAGAAAGGAAAAAGGCCTCACCCAAACGAGTGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGCTTGTTGGGATTTGGAGCTAACTTGCATCAAACAAGTCAAACCTATGAACTACGAGCCTGCACCAACTATACAATTGAATCATGATGTCACAATTGAGGAAATTCAAGAATATTTTGCCAATTACATGGTGAATGATGGTATTGGAGCCATTGCAAATGCCCACACTGTCTTTGCAGATAAGAACTCTAAGAAGGCAATGAGTGTTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCAAAGACTGGTGTGCCAGCAAACTTGCCACGCAACCTTCGTGTTCACGAGTATCCTGATTTCATGGACAAGCCCAATAAACCAACTTATGTATCAAATGGTGTTCTTGGGAAGCTTTTTAGAGGAGTGAAAGATGTTTCATCTGATGTCAACACCTTTGAAATTTTCACTAGGGAAGTTGCTACCAAGTACTACGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATCTAAGAGAAGCTTTTGATTACAAAACTAAGTACGACTTCAAATTGGGGAACCTTATGGATTATTATGGTATTAAAACAGAACCTGAATTAGTTAGTGGAAATGTCTTGAAGATGGCGAAGTCTTTTGATAAAAGGAATGACTTGGAACAAATTACCTTTGCTATGAAGTCTCTAAGAAAGGAGGTCAGGTCTTGGTTCAATGAGAATGAAAGTAAATTTACATACGACGACATTGAAGACGAATACGCAAAAGCATCCGCATGGTACTATGTCACATATCACCCAGATTATTGGGGTTGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAACTTATTCAAATCAAAAGAGATAAGATGACATTGAAGAATTCTTACCCAGTGTCATCATTATTCCACAATTTTGACGGGTGTTATATGCTTAAAAGAGATTGTGATGAGATGATCAAAAGGTTTGATGCCTCTGTATCCCTAATTTATATGTCCCTACTTAATGAGATGAATTTTAGAGTTTTCCGTATGAAATTGTATGCCTAA

Protein sequence

MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDGCYMLKRDCDEMIKRFDASVSLIYMSLLNEMNFRVFRMKLYA*
Homology
[Close]
BLAST of Csa5G564290 vs. Swiss-Prot
Match: RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1220.3 bits (3156), Expect = 0.0e+00
Identity = 626/1106 (56.60%), Postives = 793/1106 (71.70%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTI+++GF   V+A+EVK+FLE  TG GTV  +++ +PK    R  ++ V F S+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAI-VQFTSERHT 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
              I+   T    +L++  SYLKA E+E+ +V K       +  +  +K   G  +S  K 
Sbjct: 61   RLII---TAAAERLYYGRSYLKAFEVEQDIVPKPRAS---LHTISGLKMFFGCQVSTKKF 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
              +W  +   V FG G RKL F  S+   +Y++EL +ENI  ++   P    SKF +IQ+
Sbjct: 121  LTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 180

Query: 181  QGAPRIFRKTPSSSS-----SPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHH 240
             GAP+IF K     +        YS+ S   +WIR  DFT SSCIGQS   CL+L    +
Sbjct: 181  IGAPKIFEKEDQPINLLFGIMDFYSDGSDE-QWIRTTDFTSSSCIGQSTAFCLELPVHLN 240

Query: 241  LPPFFQTLVGYKVTYAP-FILHKGSSLVSNSN-LVPIITPPQAFDISYKILFKINALLQH 300
            +P F +    Y    A  F++  GSS  SN+N LVP++ PP  F + ++ILFK+N L+Q+
Sbjct: 241  VPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQN 300

Query: 301  GYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQL 360
              LSGP LD +F+RL++  ++    IDH LEKLF+L ECCY+P  WL+D+Y  + +  +L
Sbjct: 301  ACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKL 360

Query: 361  PWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELD 420
            P    ISLDDGLVY++RVQ+TP +VYF GPE N+SNRV+R +   I+NFLRVSFVDE+L+
Sbjct: 361  PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 420

Query: 421  KLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFA 480
            K+ S+DL+PRSS+    +RT++YDR+ SVL++GIVIG+KKFEFLAFS+SQLRENS WMFA
Sbjct: 421  KVRSMDLSPRSSTQ---RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 480

Query: 481  SREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKN 540
              + ++AA IR WMGDF HIRNVAKYAARLGQSF SSR+TL V   EIEVIPDVE+    
Sbjct: 481  PIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLG 540

Query: 541  IMYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNS 600
              Y FSDGIGKIS   A+KVA KCGL   +PSAFQIRY GYKGVVA+DP S KKLSLR S
Sbjct: 541  TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 600

Query: 601  MLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDP 660
            M K+ S +T+LDVL+WSKYQPC++NRQ+I LLSTLG+ D VF KKQ+E +D+LD+IL  P
Sbjct: 601  MSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHP 660

Query: 661  SRALEVLELMSPGEMTSILKEL-LSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPE 720
              A E L LM+PGE T+ILK L L  Y P+ EPFL+MML+ FRA+KLL+L+TK+RIF+  
Sbjct: 661  LEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISG 720

Query: 721  GRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVD 780
            GR+M+GCLDETRTLEYGQV V  S P R     F++ G +VVAKNPCLHPGDVRVL AV+
Sbjct: 721  GRSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVN 780

Query: 781  VKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTI 840
            V AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YF CWD EL   +  +PM+Y P PT 
Sbjct: 781  VPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQ 840

Query: 841  QLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDF 900
             L+HDVTIEE++EYFANY+VND +G IANAHT FADK   KA S  CI+LAK FS AVDF
Sbjct: 841  ILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDF 900

Query: 901  PKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREV 960
            PKTGV A +P++L V EYPDFM+KP+KPTY S  V+GKLFR VK+ +  + + + FT +V
Sbjct: 901  PKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDV 960

Query: 961  ATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFD 1020
            A+K YD DMEVDGFE+Y+ EAF  K  YDFKLGNLMDYYGIKTE E++SG +++M+KSF 
Sbjct: 961  ASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFT 1020

Query: 1021 KRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNE 1080
            KR D E I  A+++LRKE  S FN +E +      E+E AKASAWY+VTYH  YWG YNE
Sbjct: 1021 KRRDAESIGRAVRALRKETLSLFNASEEE------ENESAKASAWYHVTYHSSYWGLYNE 1080

Query: 1081 GMQRDHFLSFPWCVADKLIQIKRDKM 1099
            G+ RDHFLSF WCV DKL++IK+  +
Sbjct: 1081 GLNRDHFLSFAWCVYDKLVRIKKTNL 1088

[Close]
BLAST of Csa5G564290 vs. Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 903.3 bits (2333), Expect = 2.8e-261
Identity = 445/736 (60.46%), Postives = 563/736 (76.49%), Query Frame = 1 

Query: 378  VYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYD 437
            VYF GPE N+SNRVVR F  DI+NFLR+SFVDE+ +KL + DL+PRS+S  ++ RT +Y 
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 438  RVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVA 497
            RV+SVL +GI IG K FEFLAFS+SQLR+NS WMFASR+GL+A+DIR WMGDF +IRNVA
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 498  KYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKC 557
            KYAARLGQSF SS +TL V+++E+E I D+   +    + FSDGIGKIS   A +VA KC
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDI---KNGTQHVFSDGIGKISSAFANEVAMKC 188

Query: 558  GLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFL 617
             L    PSAFQIRY GYKGVVA+DPTS+ KLSLR SMLK+ S +  +DVL++SKYQP FL
Sbjct: 189  NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248

Query: 618  NRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLS 677
            NRQ+I LLSTLG+ D VF +KQ+EA++QL+ ++ DP  A+E +ELM  GE+T+ +KELL 
Sbjct: 249  NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308

Query: 678  F-YMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCS 737
              Y P++EP+L+M+L+TFRA+KLL+LKTKSRI +P+GR M+GCLDETRTL+YGQVF+  +
Sbjct: 309  CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368

Query: 738  VPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNE 797
                 ++  F V GK+V+AKNPCLHPGD+R+L AVDV  LHHM +CVVFPQ+G RPHPNE
Sbjct: 369  SGVNDND-RFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNE 428

Query: 798  CSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGI 857
            CSGSDLDGD+YF  WD  L   + V PM+Y PAPT  L+HDVTIEE++EYF NY+VN+ +
Sbjct: 429  CSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESL 488

Query: 858  GAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDK 917
            G IANAH VFADK   KA S  CI+LAKLFSIAVDFPKTGVPA +P  L V EYPDFM+K
Sbjct: 489  GMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEK 548

Query: 918  PNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDY 977
             +K TY S GV+GKL+R +K  +  +   + FTREVA + YD DM VDG+E Y+ EA   
Sbjct: 549  LDKVTYESKGVIGKLYREIKKHTPHI---KHFTREVARRSYDTDMIVDGYEDYITEAMAL 608

Query: 978  KTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFN 1037
            K +YDFKLGNLMD+YGIK+E E++SG +LKMAK+F K++D + I  A++SLRKE RS F+
Sbjct: 609  KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFS 668

Query: 1038 ENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRD 1097
            E          +   AKASAWY+VTYHP++WGCYNEG +R HF+SFPWC+ +KL++IK+ 
Sbjct: 669  EMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLLRIKQR 728

Query: 1098 KMTLKNSYPVSSLFHN 1113
            +  ++   P     HN
Sbjct: 729  RKFVRKMQPELFSLHN 737

[Close]
BLAST of Csa5G564290 vs. Swiss-Prot
Match: RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)

HSP 1 Score: 724.5 bits (1869), Expect = 1.8e-207
Identity = 436/1139 (38.28%), Postives = 648/1139 (56.89%), Query Frame = 1 

Query: 4    TIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRIS------KPKD-EKARFTSVTVLFKS 63
            T++I      + ADE+  FLE H G+ TV  + I       KP+D  + +FT++ V  ++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   KLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMIS 123
            +L +          + KL F++  L+  E    ++ +    V   +R++D+   +G   S
Sbjct: 71   QLLSS---------QSKLLFKTHNLRLSEAYDDIIPRP---VDPRKRLDDIVLTVGFPES 130

Query: 124  NGKMRVI---WEGEK-WSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEP 183
            + K       W+G + W +      R++ F++    D YK+E+ FE+I+     C   + 
Sbjct: 131  DEKRFCALEKWDGVRCWIL---TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDA 190

Query: 184  SKF--FLIQLQGAPRIFRK------TPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSF 243
            S+   FL++L+  P++F++      T   S    +  +   F WIR  DF+ S  IG S 
Sbjct: 191  SEIDAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTST 250

Query: 244  TICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPP-QAFDISYKI 303
              CL++     +   F  L  Y+          G +  S + +VP++       +  Y+I
Sbjct: 251  CFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEI 310

Query: 304  LFKINALLQHGYLSGPTLDD-EFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKD 363
            LF++NAL+    +S     D E  +++      +  +   L+KL      CY P  ++K 
Sbjct: 311  LFQLNALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKT 370

Query: 364  QYLSYYTSNQLPWKSNIS--LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDID 423
            Q  S     +    S      +  ++   R  +TP K+Y  GPE   +N VV+ F   + 
Sbjct: 371  QMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVS 430

Query: 424  NFLRVSFVDEELDKL--HSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLA 483
            +F+RV+FV+E+  KL  +++ +  +        RT +Y+RV+S+L  GI +G K+FEFLA
Sbjct: 431  DFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLA 490

Query: 484  FSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEE 543
            FSASQLR NS WMFAS E + A DIREWMG F  IR+++K AAR+GQ F +SR+TL V  
Sbjct: 491  FSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRA 550

Query: 544  HEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVV 603
             ++E IPD+EV      YCFSDGIGKIS   AK+VA+KCGL +H PSAFQIRY GYKGV+
Sbjct: 551  QDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVI 610

Query: 604  AIDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKK 663
            A+D +S +KLSLR+SMLK+ S +  L+V  W++  PCFLNR++I LLSTLGI D +F   
Sbjct: 611  AVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAM 670

Query: 664  QKEAIDQLDSILEDPSRALEVLELMSPGEMTSIL-KELLSFYMPNEEPFLNMMLRTFRAN 723
            Q   +  L ++LED   AL VL+ +S     ++L K LL  Y P+ EP+L+MMLR    +
Sbjct: 671  QAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHES 730

Query: 724  KLLDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVP------------RRSSEGN 783
            +L +LK++ RI VP+GR +IGC+DE   LEYGQV+V  ++             R+  E  
Sbjct: 731  QLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEET 790

Query: 784  FVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHM--VDCVVFPQKGKRPHPNECSGSDLD 843
             VV GK+VV KNPCLHPGD+RVLDA+          +DC++FPQKG+RPHPNECSG DLD
Sbjct: 791  SVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLD 850

Query: 844  GDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAH 903
            GD +F  WD ++   +   PM+Y  +    ++HDVT+EEI ++F +YM++D +G I+ AH
Sbjct: 851  GDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAH 910

Query: 904  TVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYV 963
             V AD++ +KA S +C++LA L S AVDF KTG PA +P  L+  E+PDF+++  KPTY+
Sbjct: 911  LVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYI 970

Query: 964  SNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFK 1023
            S  V GKL+R VK   S +   +       T  YD  +E  GFE ++  A  ++  Y  K
Sbjct: 971  SESVFGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEK 1030

Query: 1024 LGNLMDYYGIKTEPELVSGNVLKMAKSFDKRND------LEQITFAMKSLRKEVRSWFNE 1083
            L +LM YYG   E E+++G +LK  + +  R++       ++IT ++K L KE   WF +
Sbjct: 1031 LTSLMIYYGAANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK 1090

Query: 1084 NESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRD 1097
                 + +D + +   ASAWYYVTY+P      N   ++  FLSFPW V D L+ IK +
Sbjct: 1091 -----SCEDEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAE 1116

[Close]
BLAST of Csa5G564290 vs. Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 713.4 bits (1840), Expect = 4.1e-204
Identity = 409/1004 (40.74%), Postives = 597/1004 (59.46%), Query Frame = 1 

Query: 124  WEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQLQGA 183
            W+G +   E   G R++  YL ++   YK+E+ FE++      C L+      L+QL  A
Sbjct: 130  WDGVR--AEVIPGKRRVDLYLEHDSQRYKLEVLFEDMKDC-LGCTLDGMGAI-LLQLNYA 189

Query: 184  PRIFRKTPSSSSSPLYSN-------KSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHL 243
            PRI       + +  + +       +   F W+R +DFTP+   G+  T+ L+L  S  +
Sbjct: 190  PRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALV 249

Query: 244  PPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYL 303
                ++L  +        ++    + ++SN+VP++  P+ + + Y++LF++N+L+  G +
Sbjct: 250  SDILKSLP-FSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKI 309

Query: 304  SGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWK 363
                ++ + F+ +       D      EK+  L+  CY P ++++ +  S   S+ +   
Sbjct: 310  VAKHVNADLFKALQE--LPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNV-LL 369

Query: 364  SNISLDDG---LVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELD 423
            SN    +G   L+  +RV ITP K++  GPE  ++N VV+       +F+RV+FVDE+  
Sbjct: 370  SNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWS 429

Query: 424  KLHSIDLAPRSSSHENSQ--RTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWM 483
            KL S  ++ R      S+  +T +Y R++S+LK G  IG K FEFLAFSASQLR NS WM
Sbjct: 430  KLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWM 489

Query: 484  FASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVER 543
            FAS   L+A  IR WMG F +IR+V+K AAR+GQ F SSR+T  V   ++EVIPD+E+  
Sbjct: 490  FASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITT 549

Query: 544  KNIMYCFSDGIGKISKTLAKKVAEKCGLI-NHTPSAFQIRYAGYKGVVAIDPTSKKKLSL 603
                Y FSDGIGKIS   AK+VA   GL   + PSAFQIRY GYKGV+AIDP S   LSL
Sbjct: 550  DGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSL 609

Query: 604  RNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSIL 663
            R SM K+ S    L++ SWSK QPC++NR++I+LLSTLGI D++FV  Q++ + + + +L
Sbjct: 610  RPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEML 669

Query: 664  EDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFV 723
             +   AL VL  +   E  + +K LL  Y P+ EP+L+M+L+  + N+L D++T+ +I V
Sbjct: 670  TNKEVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHV 729

Query: 724  PEGRTMIGCLDETRTLEYGQVFVHC---SVPRRSSEGNF---------VVKGKIVVAKNP 783
            P+GR +IGCLDET  LEYGQV++     S  ++ S  ++          V GK+ + KNP
Sbjct: 730  PKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNP 789

Query: 784  CLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCI 843
            CLHPGD+RVL+A+    L  MVDC+VFPQ+G+RPHPNECSG DLDGDLYF  WD +L   
Sbjct: 790  CLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPE 849

Query: 844  KQVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVE 903
            K   PM+Y       ++H VT+EEIQ++F +YM+ND +GAI+ AH + AD++  KA S E
Sbjct: 850  KVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPE 909

Query: 904  CIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFR---GV 963
            C++LA L S+AVDF KTG PA +PR LR  EYPDFM++  KP Y+SNGVLGKL+R   G 
Sbjct: 910  CLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGH 969

Query: 964  KDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKT 1023
             + S D       + +  +  YDPD+EV G +++L+ A +Y   Y+ KL  LM+YY  + 
Sbjct: 970  MEKSGDSGALSSSSAQ-PSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAEL 1029

Query: 1024 EPELVSGNV---LKMAKSFDKR--NDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDE 1083
            E E+++GN+   +   K  +KR     ++I  A+ +L +E R W   +  +      ED 
Sbjct: 1030 EDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRKE------EDA 1089

Query: 1084 YAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIK 1095
               ASAWY VTYHPD         +   F SFPW   D L+ IK
Sbjct: 1090 SRMASAWYRVTYHPD-------RRRGKRFWSFPWIACDNLLAIK 1111

[Close]
BLAST of Csa5G564290 vs. Swiss-Prot
Match: RDR6_ARATH (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 3.1e-159
Identity = 374/1017 (36.77%), Postives = 552/1017 (54.28%), Query Frame = 1 

Query: 150  EYKMELCFENILSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFR-- 209
            +YK+EL   +I +V     L+      ++QL  +PR++ +T   +   +Y          
Sbjct: 192  DYKLELLVRDIQTVRQYKTLH--GFVLILQLASSPRVWYRT---ADDDIYDTVPGDLLDD 251

Query: 210  ---WIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGY---------KVTYAPFIL 269
               WIR  DFT    IG+  +  + +SP +      +T + Y         +V + P I 
Sbjct: 252  DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENK--LRTALDYFRMRRVQEERVRWPPRIR 311

Query: 270  HKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFH 329
            ++       S+    I   +   IS++I+F +N++L  G  +   L + FF L+ +    
Sbjct: 312  NEPCFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQP-- 371

Query: 330  SDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITP 389
             D    +L+ L   K   +   K LK     +   N     S+   +D +  + R+ ITP
Sbjct: 372  KDVNIASLKHLCTYKRPVFDAYKRLK-LVQEWIQKNPKLLGSHEQSED-ISEIRRLVITP 431

Query: 390  LKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS-------IDLAPRSSSHE 449
             + Y   PE  LSNRV+RR+    + FLRV+F+DE +  ++S         +    +S  
Sbjct: 432  TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 491

Query: 450  NSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMG 509
             SQ+T V+ RV S+L +G  +  +K+ FLAFSA+QLR+ S W FA       +DI+ WMG
Sbjct: 492  FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 551

Query: 510  DFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEV-IPDVEVERKNIMYCFSDGIGKISK 569
             F   +NVAK AAR+G  F S+  T+ V  HE++  +PD+E       Y FSDGIG I+ 
Sbjct: 552  KFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITP 611

Query: 570  TLAKKVAEKCGL-INHTPSAFQIRYAGYKGVVAIDPTSKK--KLSLRNSMLKYMSLDTQL 629
             LA +V EK  L ++++P A+QIRYAG+KGVVA  P+     +L+LR+SM K+ S  T L
Sbjct: 612  DLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTIL 671

Query: 630  DVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMS 689
            ++ SW+++QP FLNRQ+I LLS LG+ D++F   Q+  + +L+ IL+D   A EVL    
Sbjct: 672  EICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASC 731

Query: 690  PGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCLDETR 749
              +  +    L + + P  EP L  ML + R  +L  L+ KSRIFV  GR ++GCLDE  
Sbjct: 732  AEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAG 791

Query: 750  TLEYGQVFVHCSVP-------------RRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAV 809
             LE+GQ F+  S P             + +     VVKG + +AKNPCLHPGDVR+L+AV
Sbjct: 792  ILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAV 851

Query: 810  DVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLEL--TCIKQVKPMNYEPA 869
            DV  LHHM DC++FPQKG RPH NE SGSDLDGDLYF  WD +L     K    M+Y+ A
Sbjct: 852  DVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAA 911

Query: 870  PTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIA 929
                L   V  ++I ++FA  + N+ +G I NAH V AD++   AM  EC+ LA+L + A
Sbjct: 912  EEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATA 971

Query: 930  VDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDV-SSDVNTFEIF 989
            VDFPKTG   ++P +L+   YPDFM K +  TY SN +LG+L+R VK+V   D       
Sbjct: 972  VDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEE 1031

Query: 990  TREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMA 1049
            + + +   YD  +E+ GFE  + EA+ +K  YD +L  L+  Y ++ E E+V+G++  M 
Sbjct: 1032 STDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMP 1091

Query: 1050 KSFDKRND--LEQITFAMKSLRKEVRSWFNENESKFTYDDIEDE------YAKASAWYYV 1109
            K   K+     E++  +  SL+KE R  F E      ++++ +E        KASAWY+V
Sbjct: 1092 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIP--DHENLSEEEKNILYEKKASAWYHV 1151

[Close]
BLAST of Csa5G564290 vs. TrEMBL
Match: A0A0A0KRH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G564290 PE=4 SV=1)

HSP 1 Score: 2350.5 bits (6090), Expect = 0.0e+00
Identity = 1156/1156 (100.00%), Postives = 1156/1156 (100.00%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
            TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDGCYMLKRDCDEMIKRFDASVSLIYMS 1140
            SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDGCYMLKRDCDEMIKRFDASVSLIYMS
Sbjct: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDGCYMLKRDCDEMIKRFDASVSLIYMS 1140

Query: 1141 LLNEMNFRVFRMKLYA 1157
            LLNEMNFRVFRMKLYA
Sbjct: 1141 LLNEMNFRVFRMKLYA 1156

[Close]
BLAST of Csa5G564290 vs. TrEMBL
Match: A0A0S1YCZ4_CUCSA (RNA-dependent RNA polymerase 1c OS=Cucumis sativus GN=RDR1c PE=2 SV=1)

HSP 1 Score: 2169.8 bits (5621), Expect = 0.0e+00
Identity = 1060/1111 (95.41%), Postives = 1089/1111 (98.02%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVA ETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYI+HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSS ENSQRTRVYDRV+S+LKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421  APRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGL +HTPSAFQIRYAGYKGVVAIDPTS+KKLSLR SMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVL WSKYQPCFLNRQVINLLSTLGI DDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPN+EPFLNMMLRTFRA+KLLDL+TKSRIFVP+GRTM+GCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DET+TLEYGQVFVHCS+P RSSEGNFVVKGK+VVAKNPCLHPGDVR+LDA+DVKALHHMV
Sbjct: 721  DETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIKQVKPM+Y+PAPTIQL+HDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EE+QEYFANYMVNDG+GAIANAHTVFADKNSKKAMS ECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNK TYVSNGVLGKLFRGVKDVSSDV+ FEIFTREVATK YDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGN+LKMAKSFDKR DLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
             FAMKSLRKEVR WFNENESK TYDDI+DEYA+ASAWY VTYHPDYWGCYNEG +RDHFL
Sbjct: 1021 AFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASAWYCVTYHPDYWGCYNEGTKRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFH 1112
            SFPWCVADKLIQIKR+KM+++NS P SSL H
Sbjct: 1081 SFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111

[Close]
BLAST of Csa5G564290 vs. TrEMBL
Match: E5GB63_CUCME (RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 2074.3 bits (5373), Expect = 0.0e+00
Identity = 1025/1137 (90.15%), Postives = 1065/1137 (93.67%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            M KTIEIYGF P+VT DEVKEFLENHTGDGTVSTVRISKPKD+K RFTSVTV FKSKLAA
Sbjct: 1    MEKTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAK+TTEE+KLWFESSYLKARE+EK    K T G  EMERMEDVKG LGSMIS  KM
Sbjct: 61   EYIVAKATTEEKKLWFESSYLKAREVEK----KATSGGPEMERMEDVKGQLGSMISKDKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKW+VEFGNG RKLWFYLSYEVD+YKMELCFENILSVEFRCPLN+PSKFFLIQ+
Sbjct: 121  RVIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLIQV 180

Query: 181  QG---------------------APRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSC 240
                                   APRIFRKTPSSSSSPLYSN+S SFRWIRDVDFTPSSC
Sbjct: 181  SSFFLSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSC 240

Query: 241  IGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDI 300
            IGQSFT+CLQ SPSHHLPPFFQTLVGYKVTY PFIL KGSS VSNSNLVPIITPPQAFDI
Sbjct: 241  IGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDI 300

Query: 301  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKW 360
            SYKILFKINALLQ GYLSGPTLDDEFFRLVDSSRFH DYI+HALEKLFNLKECCYKPQKW
Sbjct: 301  SYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKW 360

Query: 361  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 420
            LKDQYLSYY SNQLPWK N+SLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFI DI
Sbjct: 361  LKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDI 420

Query: 421  DNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAF 480
            DNFLRVSFVDEELDKLHSIDLAPRSSS EN+ RTRVYDRVVSVLKNGIVIG+KKFEFLAF
Sbjct: 421  DNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAF 480

Query: 481  SASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 540
            SASQLRENSFWMFASR+GLSAADIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCV+EH
Sbjct: 481  SASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEH 540

Query: 541  EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVA 600
            EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVA+KCGL  HTPSAFQIRYAGYKGVVA
Sbjct: 541  EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVA 600

Query: 601  IDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 660
            IDPTS+KKLSLR SMLKYMSLDTQLDVL WSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ
Sbjct: 601  IDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 660

Query: 661  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKL 720
            KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMML TFRANKL
Sbjct: 661  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKL 720

Query: 721  LDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPC 780
            LDLKTKSRIFVP GRTM+GCLDETRTLEYGQVFVHCSVP RSSEGNFVVKGK+VVAKNPC
Sbjct: 721  LDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPC 780

Query: 781  LHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIK 840
            LHPGDVR+LDA+DVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIK
Sbjct: 781  LHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIK 840

Query: 841  QVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVEC 900
            QVKPM+YEPAP+IQL+HDVTIEE+Q+YFANYMVNDG+GAIANAHTVFADKNSKKAMS EC
Sbjct: 841  QVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAEC 900

Query: 901  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 960
            IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKP+KPTYVSNGVLGKLFRGVKDVS
Sbjct: 901  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVS 960

Query: 961  SDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1020
            SDVNTFEIFT+EVATK YDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL
Sbjct: 961  SDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1020

Query: 1021 VSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIE-DEYAKASAWY 1080
            VSGN+LKMAKSFDKRNDLEQI FAMKSLRKEVRSWFNENESK+TY+DIE DEYA+ASAWY
Sbjct: 1021 VSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTYEDIEDDEYARASAWY 1080

Query: 1081 YVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
             VTYHPDYWG YNEG QRDHFLSFPWCVADKLIQIKR+KM+L+NS P+SSL +NFDG
Sbjct: 1081 CVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQYNFDG 1133

[Close]
BLAST of Csa5G564290 vs. TrEMBL
Match: F6HFC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05870 PE=4 SV=1)

HSP 1 Score: 1307.4 bits (3382), Expect = 0.0e+00
Identity = 665/1117 (59.53%), Postives = 829/1117 (74.22%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTI++YG    V+A+E+KEFLE +TG+GT+  + I +PK   +  T   V F S   A
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS-MTHAKVQFTSLRLA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
            E I++ +    ++LW+  +YLKARE++  ++ K    +  M+R   +  H G  +SN + 
Sbjct: 61   ELIISLA----KQLWYGGNYLKAREMDLDIIPKPRTFLHSMDR---ITLHFGYQMSNERF 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
             V+W+    SV+FG G RK +F+LS+  +EYK+EL  ENI  ++ R P  + +KF LIQL
Sbjct: 121  CVLWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
              AP+I+ K  S+ S   Y  ++   +W+R++DFTPS  IGQS  +CL+L     LP F 
Sbjct: 181  LDAPQIYEKDVSALS---YFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFC 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            +    YK     FIL  G+S   N +LVPI+ PPQ  ++ +KILFKIN L+Q+G LSGPT
Sbjct: 241  ENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LD  FFR VD  R +  +I+HALEKL+ L+ECCY+P +WL +QY +Y  S Q+     IS
Sbjct: 301  LDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGSPAIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LD GLVYV RVQITP KVYFCGPE N+SNRV+R +  DIDNFLRVSF+DE  +K+HS  +
Sbjct: 361  LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVI 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            +PR S+    +RT VY R++S+L+NGIVIG+KKF+FLA S+SQLR+NS WMFASR GL+A
Sbjct: 421  SPRMSNE--GRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540
            ADIR  MGDF  IRNVAKYAARLGQSF SS++TL V +HEIE+IPD+E  R    Y FSD
Sbjct: 481  ADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKIS  LA +VA KCG  N TPSAFQIRY GYKGVVA+DPTS +KLSLR SM KY S 
Sbjct: 541  GIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESE 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            +T LDVLSWSKY+PCFLNRQ+I LLSTLG+ D VF KKQ+EA+DQLD+IL+DP RA E L
Sbjct: 601  NTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEAL 660

Query: 661  ELMSPGEMTSILKELLSF-YMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGC 720
            ELMSPGE T+ILKE+L   Y P+ EPFL+MML+TFRA KLL+L+TK+RIFVP GR+M+GC
Sbjct: 661  ELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGC 720

Query: 721  LDETRTLEYGQVFVHCS-VPRRSSEG-------------NFVVKGKIVVAKNPCLHPGDV 780
            LDETRTLEYG+VFV  S    R S G             NF+++GK+VVAKNPCLHPGDV
Sbjct: 721  LDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDV 780

Query: 781  RVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMN 840
            R+L AVDV ALHHMVDCVVFPQKG RPHP+ECSGSDLDGD+YF CWD +L   +Q+ PM+
Sbjct: 781  RILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMD 840

Query: 841  YEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKL 900
            Y PAPT  L+HDV IEE++EYF NY+ ND +G IANAHTVFADK   KA+   C +LAKL
Sbjct: 841  YTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKL 900

Query: 901  FSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTF 960
            FSIA++FPKTGVPA +P +L V EYPDFM+K NKPTY S  V+GKLFR VKDV+      
Sbjct: 901  FSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDV 960

Query: 961  EIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVL 1020
              FTR+VA + YD DMEVDGFE Y+R+AF YK++YDFKLG+LMD  GI+TE E++SG+++
Sbjct: 961  RSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIM 1020

Query: 1021 KMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPD 1080
            KM+KSFDKR D E I  A++SLRKE R+WFN+  S  TY   +D YA ASAWY+VTYHP 
Sbjct: 1021 KMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSG-TYAGADDVYAIASAWYHVTYHPY 1080

Query: 1081 YWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKN 1103
            YWGCYNEGM  DHFLSFPWCV DKLIQIKRDKM++++
Sbjct: 1081 YWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSIRS 1102

[Close]
BLAST of Csa5G564290 vs. TrEMBL
Match: B3SND7_GOSHI (RNA-dependent RNA polymerase OS=Gossypium hirsutum PE=4 SV=1)

HSP 1 Score: 1299.3 bits (3361), Expect = 0.0e+00
Identity = 658/1120 (58.75%), Postives = 824/1120 (73.57%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTI++YGF   V+A EVK FLE +TG  TV  ++I + K     F  V   F     A
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQ--FTRSSDA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
              I+  +    ++L++  SYLKARE+E  +V K    +  MER   V  + G  +S  K 
Sbjct: 61   GLIIRLAN---QRLYYGRSYLKAREMETDIVPKPRVFLHTMER---VTVNFGCQVSEEKF 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
             V+W+ +  ++ FG G RKL F LSY   +YK+EL +ENI  +E RCP ++ SK  LIQL
Sbjct: 121  YVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQL 180

Query: 181  QGAPRIFRKTPSSSS----SPL--YSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSH 240
             GAPRI+ K   +S      PL  Y       +W+R  DFT S+CIGQS  + L+L  + 
Sbjct: 181  FGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNL 240

Query: 241  HLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHG 300
             LP F +    YK      +L  GSS   N +LVPI+ P +  D+ ++ILFK+N L+Q+G
Sbjct: 241  QLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNG 300

Query: 301  YLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLP 360
             + GP LDD F+RLVD  R H  YIDHALEKL+ L+ECCY+P +WL ++Y ++  S +  
Sbjct: 301  CIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQ 360

Query: 361  WKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDK 420
                ISLD+GLVYV RVQITP +VYFCGPE N+SNRV+R+F  DIDNFLR+SFVDEEL+K
Sbjct: 361  GSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEK 420

Query: 421  LHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFAS 480
            +HS ++  R       +RT +Y R++S L+NGIVIGNK+FEFLAFS+SQLRENS WMFAS
Sbjct: 421  IHSTNVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFAS 480

Query: 481  REGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNI 540
            R+GL+AADIR WMG+F  IRNVAKYAARLGQSF SS +TL V + EI +IPD+E+ +  I
Sbjct: 481  RKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGI 540

Query: 541  MYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSM 600
             Y FSDGIGKIS   AKKVA KC L   TPSAFQIR  G+KGVVAIDPTS  KLSLR SM
Sbjct: 541  KYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSM 600

Query: 601  LKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPS 660
             KY S +T+LDVL+WSKYQPCFLNRQ+I LLSTLG+ D  F KKQ+E +DQL+++L DP 
Sbjct: 601  EKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPL 660

Query: 661  RALEVLELMSPGEMTSILKE-LLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEG 720
             A E LELMSPGE T+ILKE LL  Y P+ EPFL+MML TFRA+KLL+L+TK+RIFV +G
Sbjct: 661  EAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKG 720

Query: 721  RTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDV 780
            R+M+GCLDETRTL YGQVFV  S  R  SE  F+V+GK++VAKNPCLHPGDVRVL AV+V
Sbjct: 721  RSMMGCLDETRTLNYGQVFVQFSGSR--SERRFIVQGKVIVAKNPCLHPGDVRVLRAVNV 780

Query: 781  KALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQ 840
              LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YF CWD EL   KQ+ PM+Y PA T +
Sbjct: 781  PDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTK 840

Query: 841  LNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFP 900
            L+H+VTIEEI+EYF NY+VND +G I+NAHT FAD+   KAMS  C++LAKLFSIAVDFP
Sbjct: 841  LDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFP 900

Query: 901  KTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVA 960
            KTGVPA +P+ LRV EYPDFM+KP+KP+Y S+ V+GKLFR VK+++ +  + +  TRE  
Sbjct: 901  KTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKM 960

Query: 961  TKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDK 1020
             ++YDPDMEV+GFE Y+ +AF +K+KYD+KLGNLMDYYG+KTE E++ G ++KM++SF K
Sbjct: 961  QRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTK 1020

Query: 1021 RNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEG 1080
            + D E I+ A++SLRKE RSWFNE  S+   ++I+D YAKASAWYYVTYHP YWG YNEG
Sbjct: 1021 KRDAEAISMAVRSLRKEARSWFNEKGSELD-EEIDDAYAKASAWYYVTYHPSYWGQYNEG 1080

Query: 1081 MQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNF 1114
            M RDHFLSFPWCV DKLIQIK++K  ++ +  +SSL H F
Sbjct: 1081 MNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRF 1103

[Close]
BLAST of Csa5G564290 vs. TAIR10
Match: AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)

HSP 1 Score: 1220.3 bits (3156), Expect = 0.0e+00
Identity = 626/1106 (56.60%), Postives = 793/1106 (71.70%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTI+++GF   V+A+EVK+FLE  TG GTV  +++ +PK    R  ++ V F S+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAI-VQFTSERHT 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
              I+   T    +L++  SYLKA E+E+ +V K       +  +  +K   G  +S  K 
Sbjct: 61   RLII---TAAAERLYYGRSYLKAFEVEQDIVPKPRAS---LHTISGLKMFFGCQVSTKKF 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
              +W  +   V FG G RKL F  S+   +Y++EL +ENI  ++   P    SKF +IQ+
Sbjct: 121  LTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 180

Query: 181  QGAPRIFRKTPSSSS-----SPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHH 240
             GAP+IF K     +        YS+ S   +WIR  DFT SSCIGQS   CL+L    +
Sbjct: 181  IGAPKIFEKEDQPINLLFGIMDFYSDGSDE-QWIRTTDFTSSSCIGQSTAFCLELPVHLN 240

Query: 241  LPPFFQTLVGYKVTYAP-FILHKGSSLVSNSN-LVPIITPPQAFDISYKILFKINALLQH 300
            +P F +    Y    A  F++  GSS  SN+N LVP++ PP  F + ++ILFK+N L+Q+
Sbjct: 241  VPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQN 300

Query: 301  GYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQL 360
              LSGP LD +F+RL++  ++    IDH LEKLF+L ECCY+P  WL+D+Y  + +  +L
Sbjct: 301  ACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKL 360

Query: 361  PWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELD 420
            P    ISLDDGLVY++RVQ+TP +VYF GPE N+SNRV+R +   I+NFLRVSFVDE+L+
Sbjct: 361  PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 420

Query: 421  KLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFA 480
            K+ S+DL+PRSS+    +RT++YDR+ SVL++GIVIG+KKFEFLAFS+SQLRENS WMFA
Sbjct: 421  KVRSMDLSPRSSTQ---RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFA 480

Query: 481  SREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKN 540
              + ++AA IR WMGDF HIRNVAKYAARLGQSF SSR+TL V   EIEVIPDVE+    
Sbjct: 481  PIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLG 540

Query: 541  IMYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNS 600
              Y FSDGIGKIS   A+KVA KCGL   +PSAFQIRY GYKGVVA+DP S KKLSLR S
Sbjct: 541  TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKS 600

Query: 601  MLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDP 660
            M K+ S +T+LDVL+WSKYQPC++NRQ+I LLSTLG+ D VF KKQ+E +D+LD+IL  P
Sbjct: 601  MSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHP 660

Query: 661  SRALEVLELMSPGEMTSILKEL-LSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPE 720
              A E L LM+PGE T+ILK L L  Y P+ EPFL+MML+ FRA+KLL+L+TK+RIF+  
Sbjct: 661  LEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISG 720

Query: 721  GRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVD 780
            GR+M+GCLDETRTLEYGQV V  S P R     F++ G +VVAKNPCLHPGDVRVL AV+
Sbjct: 721  GRSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVN 780

Query: 781  VKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTI 840
            V AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YF CWD EL   +  +PM+Y P PT 
Sbjct: 781  VPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQ 840

Query: 841  QLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDF 900
             L+HDVTIEE++EYFANY+VND +G IANAHT FADK   KA S  CI+LAK FS AVDF
Sbjct: 841  ILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDF 900

Query: 901  PKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREV 960
            PKTGV A +P++L V EYPDFM+KP+KPTY S  V+GKLFR VK+ +  + + + FT +V
Sbjct: 901  PKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDV 960

Query: 961  ATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFD 1020
            A+K YD DMEVDGFE+Y+ EAF  K  YDFKLGNLMDYYGIKTE E++SG +++M+KSF 
Sbjct: 961  ASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFT 1020

Query: 1021 KRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNE 1080
            KR D E I  A+++LRKE  S FN +E +      E+E AKASAWY+VTYH  YWG YNE
Sbjct: 1021 KRRDAESIGRAVRALRKETLSLFNASEEE------ENESAKASAWYHVTYHSSYWGLYNE 1080

Query: 1081 GMQRDHFLSFPWCVADKLIQIKRDKM 1099
            G+ RDHFLSF WCV DKL++IK+  +
Sbjct: 1081 GLNRDHFLSFAWCVYDKLVRIKKTNL 1088

[Close]
BLAST of Csa5G564290 vs. TAIR10
Match: AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)

HSP 1 Score: 724.5 bits (1869), Expect = 1.0e-208
Identity = 436/1139 (38.28%), Postives = 648/1139 (56.89%), Query Frame = 1 

Query: 4    TIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRIS------KPKD-EKARFTSVTVLFKS 63
            T++I      + ADE+  FLE H G+ TV  + I       KP+D  + +FT++ V  ++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   KLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMIS 123
            +L +          + KL F++  L+  E    ++ +    V   +R++D+   +G   S
Sbjct: 71   QLLSS---------QSKLLFKTHNLRLSEAYDDIIPRP---VDPRKRLDDIVLTVGFPES 130

Query: 124  NGKMRVI---WEGEK-WSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEP 183
            + K       W+G + W +      R++ F++    D YK+E+ FE+I+     C   + 
Sbjct: 131  DEKRFCALEKWDGVRCWIL---TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDA 190

Query: 184  SKF--FLIQLQGAPRIFRK------TPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSF 243
            S+   FL++L+  P++F++      T   S    +  +   F WIR  DF+ S  IG S 
Sbjct: 191  SEIDAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTST 250

Query: 244  TICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPP-QAFDISYKI 303
              CL++     +   F  L  Y+          G +  S + +VP++       +  Y+I
Sbjct: 251  CFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEI 310

Query: 304  LFKINALLQHGYLSGPTLDD-EFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKD 363
            LF++NAL+    +S     D E  +++      +  +   L+KL      CY P  ++K 
Sbjct: 311  LFQLNALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKT 370

Query: 364  QYLSYYTSNQLPWKSNIS--LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDID 423
            Q  S     +    S      +  ++   R  +TP K+Y  GPE   +N VV+ F   + 
Sbjct: 371  QMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVS 430

Query: 424  NFLRVSFVDEELDKL--HSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLA 483
            +F+RV+FV+E+  KL  +++ +  +        RT +Y+RV+S+L  GI +G K+FEFLA
Sbjct: 431  DFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLA 490

Query: 484  FSASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEE 543
            FSASQLR NS WMFAS E + A DIREWMG F  IR+++K AAR+GQ F +SR+TL V  
Sbjct: 491  FSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRA 550

Query: 544  HEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVV 603
             ++E IPD+EV      YCFSDGIGKIS   AK+VA+KCGL +H PSAFQIRY GYKGV+
Sbjct: 551  QDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVI 610

Query: 604  AIDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKK 663
            A+D +S +KLSLR+SMLK+ S +  L+V  W++  PCFLNR++I LLSTLGI D +F   
Sbjct: 611  AVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAM 670

Query: 664  QKEAIDQLDSILEDPSRALEVLELMSPGEMTSIL-KELLSFYMPNEEPFLNMMLRTFRAN 723
            Q   +  L ++LED   AL VL+ +S     ++L K LL  Y P+ EP+L+MMLR    +
Sbjct: 671  QAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHES 730

Query: 724  KLLDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVP------------RRSSEGN 783
            +L +LK++ RI VP+GR +IGC+DE   LEYGQV+V  ++             R+  E  
Sbjct: 731  QLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEET 790

Query: 784  FVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHM--VDCVVFPQKGKRPHPNECSGSDLD 843
             VV GK+VV KNPCLHPGD+RVLDA+          +DC++FPQKG+RPHPNECSG DLD
Sbjct: 791  SVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLD 850

Query: 844  GDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAH 903
            GD +F  WD ++   +   PM+Y  +    ++HDVT+EEI ++F +YM++D +G I+ AH
Sbjct: 851  GDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAH 910

Query: 904  TVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYV 963
             V AD++ +KA S +C++LA L S AVDF KTG PA +P  L+  E+PDF+++  KPTY+
Sbjct: 911  LVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYI 970

Query: 964  SNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFK 1023
            S  V GKL+R VK   S +   +       T  YD  +E  GFE ++  A  ++  Y  K
Sbjct: 971  SESVFGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEK 1030

Query: 1024 LGNLMDYYGIKTEPELVSGNVLKMAKSFDKRND------LEQITFAMKSLRKEVRSWFNE 1083
            L +LM YYG   E E+++G +LK  + +  R++       ++IT ++K L KE   WF +
Sbjct: 1031 LTSLMIYYGAANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK 1090

Query: 1084 NESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRD 1097
                 + +D + +   ASAWYYVTY+P      N   ++  FLSFPW V D L+ IK +
Sbjct: 1091 -----SCEDEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAE 1116

[Close]
BLAST of Csa5G564290 vs. TAIR10
Match: AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)

HSP 1 Score: 564.3 bits (1453), Expect = 1.7e-160
Identity = 374/1017 (36.77%), Postives = 552/1017 (54.28%), Query Frame = 1 

Query: 150  EYKMELCFENILSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFR-- 209
            +YK+EL   +I +V     L+      ++QL  +PR++ +T   +   +Y          
Sbjct: 192  DYKLELLVRDIQTVRQYKTLH--GFVLILQLASSPRVWYRT---ADDDIYDTVPGDLLDD 251

Query: 210  ---WIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGY---------KVTYAPFIL 269
               WIR  DFT    IG+  +  + +SP +      +T + Y         +V + P I 
Sbjct: 252  DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENK--LRTALDYFRMRRVQEERVRWPPRIR 311

Query: 270  HKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFH 329
            ++       S+    I   +   IS++I+F +N++L  G  +   L + FF L+ +    
Sbjct: 312  NEPCFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQP-- 371

Query: 330  SDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITP 389
             D    +L+ L   K   +   K LK     +   N     S+   +D +  + R+ ITP
Sbjct: 372  KDVNIASLKHLCTYKRPVFDAYKRLK-LVQEWIQKNPKLLGSHEQSED-ISEIRRLVITP 431

Query: 390  LKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS-------IDLAPRSSSHE 449
             + Y   PE  LSNRV+RR+    + FLRV+F+DE +  ++S         +    +S  
Sbjct: 432  TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 491

Query: 450  NSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMG 509
             SQ+T V+ RV S+L +G  +  +K+ FLAFSA+QLR+ S W FA       +DI+ WMG
Sbjct: 492  FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 551

Query: 510  DFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEV-IPDVEVERKNIMYCFSDGIGKISK 569
             F   +NVAK AAR+G  F S+  T+ V  HE++  +PD+E       Y FSDGIG I+ 
Sbjct: 552  KFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITP 611

Query: 570  TLAKKVAEKCGL-INHTPSAFQIRYAGYKGVVAIDPTSKK--KLSLRNSMLKYMSLDTQL 629
             LA +V EK  L ++++P A+QIRYAG+KGVVA  P+     +L+LR+SM K+ S  T L
Sbjct: 612  DLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTIL 671

Query: 630  DVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMS 689
            ++ SW+++QP FLNRQ+I LLS LG+ D++F   Q+  + +L+ IL+D   A EVL    
Sbjct: 672  EICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASC 731

Query: 690  PGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCLDETR 749
              +  +    L + + P  EP L  ML + R  +L  L+ KSRIFV  GR ++GCLDE  
Sbjct: 732  AEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAG 791

Query: 750  TLEYGQVFVHCSVP-------------RRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAV 809
             LE+GQ F+  S P             + +     VVKG + +AKNPCLHPGDVR+L+AV
Sbjct: 792  ILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAV 851

Query: 810  DVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLEL--TCIKQVKPMNYEPA 869
            DV  LHHM DC++FPQKG RPH NE SGSDLDGDLYF  WD +L     K    M+Y+ A
Sbjct: 852  DVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAA 911

Query: 870  PTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIA 929
                L   V  ++I ++FA  + N+ +G I NAH V AD++   AM  EC+ LA+L + A
Sbjct: 912  EEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATA 971

Query: 930  VDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDV-SSDVNTFEIF 989
            VDFPKTG   ++P +L+   YPDFM K +  TY SN +LG+L+R VK+V   D       
Sbjct: 972  VDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEE 1031

Query: 990  TREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMA 1049
            + + +   YD  +E+ GFE  + EA+ +K  YD +L  L+  Y ++ E E+V+G++  M 
Sbjct: 1032 STDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMP 1091

Query: 1050 KSFDKRND--LEQITFAMKSLRKEVRSWFNENESKFTYDDIEDE------YAKASAWYYV 1109
            K   K+     E++  +  SL+KE R  F E      ++++ +E        KASAWY+V
Sbjct: 1092 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIP--DHENLSEEEKNILYEKKASAWYHV 1151

[Close]
BLAST of Csa5G564290 vs. TAIR10
Match: AT2G19930.1 (AT2G19930.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-28
Identity = 175/699 (25.04%), Postives = 286/699 (40.92%), Query Frame = 1 

Query: 362 DDGLVYVHRVQITPLKVY-------FCGPEANLSNRVVRRFIGDIDNFLRVSFVD-EELD 421
           D G  + ++  + P   Y         GP    +   + + +GD DN L V F D ++  
Sbjct: 198 DSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGD-DNVLTVKFADVQKSS 257

Query: 422 KLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLREN------ 481
             +SID                Y     + KNGI+IG ++++F  F      E       
Sbjct: 258 STYSIDH---------------YFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLST 317

Query: 482 -------------SFWMFASREGLSAADIREWMGDFHHIRN---VAKYAARLGQSFGSSR 541
                        +F+   +   L+   I E    F H+     +A Y AR      S  
Sbjct: 318 KKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLIL-SKT 377

Query: 542 KTLCVEEHEI--EVIPDV--------EVERKNIMYCF-SDGIGKISKTLAK--------- 601
           KTL V+   I  + I D+        +V  KN   C  SDG G IS+ LA+         
Sbjct: 378 KTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKG 437

Query: 602 ------KVAEKCGLINHTPSAFQIRYAGY--KGVVAIDPT-SKKKLSLRNSMLKY----- 661
                  + E C         F++ Y GY  KG   ++     + + +R SM+K      
Sbjct: 438 KCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPS 497

Query: 662 ---MSLDTQLDVLSWSKY-QPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDP 721
               S    L+V++ S   +   L++ ++ LLS  GI ++ F+      +++  SI  + 
Sbjct: 498 LSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNK 557

Query: 722 SRALEVLELMSPGEMTSI-LKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPE 781
             AL     ++ GEM      +++   +P +EP L   L      +  DLK   ++ V E
Sbjct: 558 RAALNAA--LNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILLKTEKNDLKA-GKLPVTE 617

Query: 782 GRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVD 841
              ++G +D T  L+  +V V     +        + G+++V +NP LH GD+ +L A  
Sbjct: 618 SYYLMGTVDPTGALKEDEVCVILESGQ--------ISGEVLVYRNPGLHFGDIHILKATY 677

Query: 842 VKALHHMVD----CVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKP----- 901
           VKAL   V      V FPQKG R   +E +G D DGD+YF   + EL  ++  KP     
Sbjct: 678 VKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPEL--LENFKPSEPWV 737

Query: 902 -------MNYEPAPTIQLNHDVTIEEIQEYF--ANYMVNDGIGAIANAHTVFADK----- 958
                   N   AP+ QL+ +   EE+ E F  A +  ++ IG  A++     D+     
Sbjct: 738 SLTPPSKSNSGRAPS-QLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILG 797

[Close]
BLAST of Csa5G564290 vs. TAIR10
Match: AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-22
Identity = 117/455 (25.71%), Postives = 195/455 (42.86%), Query Frame = 1 

Query: 546 SKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKK----KLSLRNSMLKY---- 605
           SK L  +    CG        F+I Y GY  V     T+KK     + +R SM+K     
Sbjct: 434 SKNLNFEGQGPCGQEPPLLIQFRIFYNGY-AVKGTFLTNKKLPPRTVQVRPSMIKVYEDR 493

Query: 606 ----MSLDTQLDVLSWSKY-QPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILED 665
               +S    L+V++ S   +   L+R ++ LLS  G+ +D F+   +  +++  +I   
Sbjct: 494 TLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYS 553

Query: 666 PSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPE 725
              A +        + T+   +++   +P +EP+L   L      +   LK   R  + E
Sbjct: 554 ERAAFKAAINYGDDQYTA---DMILVGIPLDEPYLKDRLSYLLKTERNALKA-GRFPIDE 613

Query: 726 GRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVD 785
              ++G +D T  L+  ++   C +          + G ++V +NP LH GD+ VL A  
Sbjct: 614 SYYIMGTVDPTGELKENEI---CVILHSGQ-----ISGDVLVYRNPGLHFGDIHVLKATY 673

Query: 786 VKALHHMVD----CVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELT--------CIKQ 845
           VKAL   V      V FPQKG R   +E +G D DGD+YF   + +L          +  
Sbjct: 674 VKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSS 733

Query: 846 VKPMN-YEPAPTIQLNHDVTIEEIQEYF--ANYMVNDGIGAIANA-------HTVFADKN 905
            KP   Y      +L+ +   EE+ + F  A +   D IG  A+             D++
Sbjct: 734 SKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDES 793

Query: 906 SKKAMSVE--CIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVL 964
           +K+    +   +KL  ++  A+D PK G   +LP +L +  +P +M++  K  + S  +L
Sbjct: 794 AKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSIL 853

[Close]
BLAST of Csa5G564290 vs. NCBI nr
Match: gi|700196297|gb|KGN51474.1| (hypothetical protein Csa_5G564290 [Cucumis sativus])

HSP 1 Score: 2350.5 bits (6090), Expect = 0.0e+00
Identity = 1156/1156 (100.00%), Postives = 1156/1156 (100.00%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
            TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDGCYMLKRDCDEMIKRFDASVSLIYMS 1140
            SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDGCYMLKRDCDEMIKRFDASVSLIYMS
Sbjct: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDGCYMLKRDCDEMIKRFDASVSLIYMS 1140

Query: 1141 LLNEMNFRVFRMKLYA 1157
            LLNEMNFRVFRMKLYA
Sbjct: 1141 LLNEMNFRVFRMKLYA 1156

[Close]
BLAST of Csa5G564290 vs. NCBI nr
Match: gi|778703938|ref|XP_011655453.1| (PREDICTED: probable RNA-dependent RNA polymerase 1 [Cucumis sativus])

HSP 1 Score: 2268.4 bits (5877), Expect = 0.0e+00
Identity = 1115/1115 (100.00%), Postives = 1115/1115 (100.00%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
            TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
            SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG
Sbjct: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115

[Close]
BLAST of Csa5G564290 vs. NCBI nr
Match: gi|948561979|gb|ALM88235.1| (RNA-dependent RNA polymerase 1c [Cucumis sativus])

HSP 1 Score: 2169.8 bits (5621), Expect = 0.0e+00
Identity = 1060/1111 (95.41%), Postives = 1089/1111 (98.02%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAKSTTEERKLWFESSYLKARELEKAVVA ETKGVLEMERMEDVKGHLGSMISNGKM
Sbjct: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL
Sbjct: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
            QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
            QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
            LDDEFFRLVDSSRFHSDYI+HALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS
Sbjct: 301  LDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

Query: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
            LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL
Sbjct: 361  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420

Query: 421  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
            APRSSS ENSQRTRVYDRV+S+LKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421  APRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480

Query: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540
            ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD
Sbjct: 481  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540

Query: 541  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
            GIGKISKTLAKKVAEKCGL +HTPSAFQIRYAGYKGVVAIDPTS+KKLSLR SMLKYMSL
Sbjct: 541  GIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSL 600

Query: 601  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
            DTQLDVL WSKYQPCFLNRQVINLLSTLGI DDVFVKKQKEAIDQLDSILEDPSRALEVL
Sbjct: 601  DTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEVL 660

Query: 661  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
            ELMSPGEMTSILKELLSFYMPN+EPFLNMMLRTFRA+KLLDL+TKSRIFVP+GRTM+GCL
Sbjct: 661  ELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720

Query: 721  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
            DET+TLEYGQVFVHCS+P RSSEGNFVVKGK+VVAKNPCLHPGDVR+LDA+DVKALHHMV
Sbjct: 721  DETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMV 780

Query: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
            DCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIKQVKPM+Y+PAPTIQL+HDVTI
Sbjct: 781  DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVTI 840

Query: 841  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
            EE+QEYFANYMVNDG+GAIANAHTVFADKNSKKAMS ECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
            LPRNLRVHEYPDFMDKPNK TYVSNGVLGKLFRGVKDVSSDV+ FEIFTREVATK YDPD
Sbjct: 901  LPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDPD 960

Query: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
            MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGN+LKMAKSFDKR DLEQI
Sbjct: 961  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQI 1020

Query: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1080
             FAMKSLRKEVR WFNENESK TYDDI+DEYA+ASAWY VTYHPDYWGCYNEG +RDHFL
Sbjct: 1021 AFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASAWYCVTYHPDYWGCYNEGTKRDHFL 1080

Query: 1081 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFH 1112
            SFPWCVADKLIQIKR+KM+++NS P SSL H
Sbjct: 1081 SFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111

[Close]
BLAST of Csa5G564290 vs. NCBI nr
Match: gi|307135834|gb|ADN33705.1| (RNA-dependent RNA polymerase [Cucumis melo subsp. melo])

HSP 1 Score: 2074.3 bits (5373), Expect = 0.0e+00
Identity = 1025/1137 (90.15%), Postives = 1065/1137 (93.67%), Query Frame = 1 

Query: 1    MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
            M KTIEIYGF P+VT DEVKEFLENHTGDGTVSTVRISKPKD+K RFTSVTV FKSKLAA
Sbjct: 1    MEKTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAA 60

Query: 61   EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
            EYIVAK+TTEE+KLWFESSYLKARE+EK    K T G  EMERMEDVKG LGSMIS  KM
Sbjct: 61   EYIVAKATTEEKKLWFESSYLKAREVEK----KATSGGPEMERMEDVKGQLGSMISKDKM 120

Query: 121  RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
            RVIWEGEKW+VEFGNG RKLWFYLSYEVD+YKMELCFENILSVEFRCPLN+PSKFFLIQ+
Sbjct: 121  RVIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLIQV 180

Query: 181  QG---------------------APRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSC 240
                                   APRIFRKTPSSSSSPLYSN+S SFRWIRDVDFTPSSC
Sbjct: 181  SSFFLSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSC 240

Query: 241  IGQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDI 300
            IGQSFT+CLQ SPSHHLPPFFQTLVGYKVTY PFIL KGSS VSNSNLVPIITPPQAFDI
Sbjct: 241  IGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDI 300

Query: 301  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKW 360
            SYKILFKINALLQ GYLSGPTLDDEFFRLVDSSRFH DYI+HALEKLFNLKECCYKPQKW
Sbjct: 301  SYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKW 360

Query: 361  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 420
            LKDQYLSYY SNQLPWK N+SLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFI DI
Sbjct: 361  LKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDI 420

Query: 421  DNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAF 480
            DNFLRVSFVDEELDKLHSIDLAPRSSS EN+ RTRVYDRVVSVLKNGIVIG+KKFEFLAF
Sbjct: 421  DNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAF 480

Query: 481  SASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 540
            SASQLRENSFWMFASR+GLSAADIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCV+EH
Sbjct: 481  SASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEH 540

Query: 541  EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVA 600
            EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVA+KCGL  HTPSAFQIRYAGYKGVVA
Sbjct: 541  EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVA 600

Query: 601  IDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 660
            IDPTS+KKLSLR SMLKYMSLDTQLDVL WSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ
Sbjct: 601  IDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 660

Query: 661  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKL 720
            KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMML TFRANKL
Sbjct: 661  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKL 720

Query: 721  LDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPC 780
            LDLKTKSRIFVP GRTM+GCLDETRTLEYGQVFVHCSVP RSSEGNFVVKGK+VVAKNPC
Sbjct: 721  LDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPC 780

Query: 781  LHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIK 840
            LHPGDVR+LDA+DVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIK
Sbjct: 781  LHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIK 840

Query: 841  QVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVEC 900
            QVKPM+YEPAP+IQL+HDVTIEE+Q+YFANYMVNDG+GAIANAHTVFADKNSKKAMS EC
Sbjct: 841  QVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAEC 900

Query: 901  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 960
            IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKP+KPTYVSNGVLGKLFRGVKDVS
Sbjct: 901  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVS 960

Query: 961  SDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1020
            SDVNTFEIFT+EVATK YDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL
Sbjct: 961  SDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1020

Query: 1021 VSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIE-DEYAKASAWY 1080
            VSGN+LKMAKSFDKRNDLEQI FAMKSLRKEVRSWFNENESK+TY+DIE DEYA+ASAWY
Sbjct: 1021 VSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTYEDIEDDEYARASAWY 1080

Query: 1081 YVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
             VTYHPDYWG YNEG QRDHFLSFPWCVADKLIQIKR+KM+L+NS P+SSL +NFDG
Sbjct: 1081 CVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQYNFDG 1133

[Close]
BLAST of Csa5G564290 vs. NCBI nr
Match: gi|659074597|ref|XP_008437690.1| (PREDICTED: probable RNA-dependent RNA polymerase 1, partial [Cucumis melo])

HSP 1 Score: 1784.2 bits (4620), Expect = 0.0e+00
Identity = 872/935 (93.26%), Postives = 903/935 (96.58%), Query Frame = 1 

Query: 182  GAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQ 241
            GAPRIFRKTPSSSSSPLYSN+S SFRWIRDVDFTPSSCIGQSFT+CLQ SPSHHLPPFFQ
Sbjct: 1    GAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQ 60

Query: 242  TLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTL 301
            TLVGYKVTY PFIL KGSS VSNSNLVPIITPPQAFDISYKILFKINALLQ GYLSGPTL
Sbjct: 61   TLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTL 120

Query: 302  DDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNISL 361
            DDEFFRLVDSSRFH DYI+HALEKLFNLKECCYKPQKWLKDQYLSYY SNQLPWK N+SL
Sbjct: 121  DDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSL 180

Query: 362  DDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDLA 421
            DDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFI DIDNFLRVSFVDEELDKLHSIDLA
Sbjct: 181  DDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLA 240

Query: 422  PRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSAA 481
            PRSSS EN+ RTRVYDRVVSVLKNGIVIG+KKFEFLAFSASQLRENSFWMFASR+GLSAA
Sbjct: 241  PRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAA 300

Query: 482  DIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSDG 541
            DIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCV+EHEIEVIPDVEVERKNIMYCFSDG
Sbjct: 301  DIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDG 360

Query: 542  IGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSLD 601
            IGKISKTLAKKVA+KCGL  HTPSAFQIRYAGYKGVVAIDPTS+KKLSLR SMLKYMSLD
Sbjct: 361  IGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLD 420

Query: 602  TQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLE 661
            TQLDVL WSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLE
Sbjct: 421  TQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLE 480

Query: 662  LMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCLD 721
            LMSPGEMTSILKELLSFYMPNEEPFLNMML TFRANKLLDLKTKSRIFVP GRTM+GCLD
Sbjct: 481  LMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLD 540

Query: 722  ETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMVD 781
            ETRTLEYGQVFVHCSVP RSSEGNFVVKGK+VVAKNPCLHPGDVR+LDA+DVKALHHMVD
Sbjct: 541  ETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVD 600

Query: 782  CVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTIE 841
            CVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIKQVKPM+YEPAP+IQL+HDVTIE
Sbjct: 601  CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIE 660

Query: 842  EIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPANL 901
            E+Q+YFANYMVNDG+GAIANAHTVFADKNSKKAMS ECIKLAKLFSIAVDFPKTGVPANL
Sbjct: 661  EVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANL 720

Query: 902  PRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPDM 961
            PRNLRVHEYPDFMDKP+KPTYVSNGVLGKLFRGVKDVSSDVNTFEIFT+EVATK YDPDM
Sbjct: 721  PRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDM 780

Query: 962  EVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQIT 1021
            EVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGN+LKMAKSFDKRNDLEQI 
Sbjct: 781  EVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIA 840

Query: 1022 FAMKSLRKEVRSWFNENESKFTYDDIE-DEYAKASAWYYVTYHPDYWGCYNEGMQRDHFL 1081
            FAMKSLRKEVRSWFNENESK+TY+DIE DEYA+ASAWY VTYHPDYWG YNEG QRDHFL
Sbjct: 841  FAMKSLRKEVRSWFNENESKYTYEDIEDDEYARASAWYCVTYHPDYWGRYNEGTQRDHFL 900

Query: 1082 SFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1116
            SFPWCVADKLIQIKR+KM+L+NS P+SSL +NFDG
Sbjct: 901  SFPWCVADKLIQIKREKMSLRNSSPMSSLQYNFDG 935

The following BLAST results are available for this feature:
BLAST of Csa5G564290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RDR1_ARATH0.0e+0056.60RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1[more]
RDR1_ORYSJ2.8e-26160.46Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 ... [more]
RDR2_ARATH1.8e-20738.28RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1[more]
RDR2_ORYSJ4.1e-20440.74Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 ... [more]
RDR6_ARATH3.1e-15936.77RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1[more]
BLAST of Csa5G564290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRH3_CUCSA0.0e+00100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G564290 PE=4 SV=1[more]
A0A0S1YCZ4_CUCSA0.0e+0095.41RNA-dependent RNA polymerase 1c OS=Cucumis sativus GN=RDR1c PE=2 SV=1[more]
E5GB63_CUCME0.0e+0090.15RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
F6HFC8_VITVI0.0e+0059.53Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05870 PE=4 SV=... [more]
B3SND7_GOSHI0.0e+0058.75RNA-dependent RNA polymerase OS=Gossypium hirsutum PE=4 SV=1[more]
BLAST of Csa5G564290 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14790.10.0e+0056.60 RNA-dependent RNA polymerase 1[more]
AT4G11130.11.0e-20838.28 RNA-dependent RNA polymerase 2[more]
AT3G49500.11.7e-16036.77 RNA-dependent RNA polymerase 6[more]
AT2G19930.12.7e-2825.04 RNA-dependent RNA polymerase family protein[more]
AT2G19910.12.9e-2225.71 RNA-dependent RNA polymerase family protein[more]
BLAST of Csa5G564290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196297|gb|KGN51474.1|0.0e+00100.00hypothetical protein Csa_5G564290 [Cucumis sativus][more]
gi|778703938|ref|XP_011655453.1|0.0e+00100.00PREDICTED: probable RNA-dependent RNA polymerase 1 [Cucumis sativus][more]
gi|948561979|gb|ALM88235.1|0.0e+0095.41RNA-dependent RNA polymerase 1c [Cucumis sativus][more]
gi|307135834|gb|ADN33705.1|0.0e+0090.15RNA-dependent RNA polymerase [Cucumis melo subsp. melo][more]
gi|659074597|ref|XP_008437690.1|0.0e+0093.26PREDICTED: probable RNA-dependent RNA polymerase 1, partial [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007855RNA-dep_RNA_pol_euk-typ
Vocabulary: Molecular Function
TermDefinition
GO:0003968RNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006464 cellular protein modification process
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0009615 response to virus
biological_process GO:0009617 response to bacterium
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0060148 positive regulation of posttranscriptional gene silencing
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0000165 MAPK cascade
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0071229 cellular response to acid chemical
biological_process GO:0010025 wax biosynthetic process
biological_process GO:0001172 transcription, RNA-templated
biological_process GO:0007165 signal transduction
biological_process GO:0051707 response to other organism
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0010468 regulation of gene expression
biological_process GO:0031347 regulation of defense response
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0048519 negative regulation of biological process
biological_process GO:0045087 innate immune response
biological_process GO:1901701 cellular response to oxygen-containing compound
biological_process GO:0071310 cellular response to organic substance
cellular_component GO:0031379 RNA-directed RNA polymerase complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003968 RNA-directed RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G564290.1Csa5G564290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePANTHERPTHR23079RNA-DEPENDENT RNA POLYMERASEcoord: 17..1098
score:
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePFAMPF05183RdRPcoord: 373..935
score: 2.0E
NoneNo IPR availablePANTHERPTHR23079:SF9RNA-DEPENDENT RNA POLYMERASE 1coord: 17..1098
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G564290Cla003946Watermelon (97103) v1cuwmB416
Csa5G564290Cla003960Watermelon (97103) v1cuwmB413
Csa5G564290MELO3C005284Melon (DHL92) v3.5.1cumeB346
Csa5G564290MELO3C005257Melon (DHL92) v3.5.1cumeB355
Csa5G564290ClCG01G006600Watermelon (Charleston Gray)cuwcgB368
Csa5G564290ClCG01G006450Watermelon (Charleston Gray)cuwcgB372
Csa5G564290Lsi09G006800Bottle gourd (USVL1VR-Ls)culsiB329
Csa5G564290Lsi09G006940Bottle gourd (USVL1VR-Ls)culsiB327
Csa5G564290MELO3C005257.2Melon (DHL92) v3.6.1cumedB343
Csa5G564290MELO3C005284.2Melon (DHL92) v3.6.1cumedB329
Csa5G564290Cla97C01G006770Watermelon (97103) v2cuwmbB344
Csa5G564290Cla97C01G006910Watermelon (97103) v2cuwmbB340
Csa5G564290Bhi12G000832Wax gourdcuwgoB443
Csa5G564290CSPI05G19310Wild cucumber (PI 183967)cpicuB239
Csa5G564290Cucsa.280130Cucumber (Gy14) v1cgycuB398
Csa5G564290CmaCh15G009010Cucurbita maxima (Rimu)cmacuB294
Csa5G564290CmoCh15G009380Cucurbita moschata (Rifu)cmocuB281
Csa5G564290Cp4.1LG13g06620Cucurbita pepo (Zucchini)cpecuB189
Csa5G564290CsGy5G018850Cucumber (Gy14) v2cgybcuB223
Csa5G564290Carg25244Silver-seed gourdcarcuB0895
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G564290Melon (DHL92) v3.6.1cumedB334
Csa5G564290Silver-seed gourdcarcuB0459
Csa5G564290Silver-seed gourdcarcuB0969
Csa5G564290Wax gourdcuwgoB450
Csa5G564290Cucurbita maxima (Rimu)cmacuB301
Csa5G564290Cucurbita maxima (Rimu)cmacuB732
Csa5G564290Cucurbita moschata (Rifu)cmocuB289
Csa5G564290Cucurbita moschata (Rifu)cmocuB723
Csa5G564290Cucurbita pepo (Zucchini)cpecuB177
Csa5G564290Cucurbita pepo (Zucchini)cpecuB424