CsaV3_5G011100 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G011100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUbiquinol-cytochrome c reductase complex 6.7 kDa protein
Locationchr5 : 7074235 .. 7074550 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCCATCCAAAGCTCAGGAATGTCCTACATCCCATCAACATTGAAGCTGCTGCGTTATGGAGTGTTGCTGGGATAGCCACTGCTCTTTGGCTTGTACAGGTATTGGTCTTTCTTTTCTTTTCATCTACCATCATGTTTCTGTTTGTTCAATGCTATTTGTGAAAGATCGTAACTATTCTTCTCGTCTTGTAACTGAAAAACATGGCAGCCATTTGACTGGTTGAAGAAGAAGGTTTGGGCGGTAGAGGAGAAAGGAGAAAGCGGGGTGCAAACTAATGAATAA

mRNA sequence

ATGAAGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCCATCCAAAGCTCAGGAATGTCCTACATCCCATCAACATTGAAGCTGCTGCGTTATGGAGTGTTGCTGGGATAGCCACTGCTCTTTGGCTTGTACAGCCATTTGACTGGTTGAAGAAGAAGGTTTGGGCGGTAGAGGAGAAAGGAGAAAGCGGGGTGCAAACTAATGAATAA

Coding sequence (CDS)

ATGAAGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCCATCCAAAGCTCAGGAATGTCCTACATCCCATCAACATTGAAGCTGCTGCGTTATGGAGTGTTGCTGGGATAGCCACTGCTCTTTGGCTTGTACAGCCATTTGACTGGTTGAAGAAGAAGGTTTGGGCGGTAGAGGAGAAAGGAGAAAGCGGGGTGCAAACTAATGAATAA

Protein sequence

MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKGESGVQTNE
BLAST of CsaV3_5G011100 vs. NCBI nr
Match: KGN50751.1 (hypothetical protein Csa_5G223090 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60
          MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 61 ESGVQTNE 69
          ESGVQTNE
Sbjct: 61 ESGVQTNE 68

BLAST of CsaV3_5G011100 vs. NCBI nr
Match: XP_022988689.1 (ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0

Query: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60
          M TGEKGLLKFL PKLRN LHPINIEAA LWSVAG ATALWLVQPFDWLKKK+W VEEK 
Sbjct: 16 MMTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKT 75

Query: 61 ESGVQTNE 69
          E  VQ++E
Sbjct: 76 EDKVQSDE 83

BLAST of CsaV3_5G011100 vs. NCBI nr
Match: PRQ59644.1 (hypothetical protein RchiOBHm_Chr1g0372461 [Rosa chinensis])

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-08
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEE 59
          GE G+ KFL PK R   HP++I+AAALW VA   TALW+VQPF+W+KK  +   E
Sbjct: 3  GEVGMFKFLKPKSRP--HPVDIQAAALWGVAAGTTALWVVQPFNWIKKTFFETPE 55

BLAST of CsaV3_5G011100 vs. NCBI nr
Match: XP_024174637.1 (ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Rosa chinensis] >PRQ21087.1 hypothetical protein RchiOBHm_Chr7g0235281 [Rosa chinensis] >PRQ21090.1 hypothetical protein RchiOBHm_Chr7g0235311 [Rosa chinensis])

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-08
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEE 59
          G+ G+ KFL PK R   HP++I+AAALW VA   TALW+VQPF+W+KK  +   E
Sbjct: 3  GDVGMFKFLKPKSRP--HPVDIQAAALWGVAAGTTALWVVQPFNWIKKTFFETPE 55

BLAST of CsaV3_5G011100 vs. NCBI nr
Match: KJB78583.1 (hypothetical protein B456_013G008400 [Gossypium raimondii])

HSP 1 Score: 65.5 bits (158), Expect = 8.3e-08
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          GE  + KFL P+LR    PI+I+AAA W VA   TALWL+QPFDWLKK
Sbjct: 3  GEGSMFKFLKPRLRP--QPIDIQAAAAWGVAATTTALWLIQPFDWLKK 48

BLAST of CsaV3_5G011100 vs. TAIR10
Match: AT2G40765.1 (unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 5.0e-07
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 0

Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          G  GLL  + PK++     I+I+AAA W +A  A A+W+VQPF W+KK
Sbjct: 3  GTSGLLNAVKPKIQT----IDIQAAAGWGIAAAAGAIWVVQPFGWIKK 46

BLAST of CsaV3_5G011100 vs. Swiss-Prot
Match: sp|P48505|UCR11_SOLTU (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 6.9e-06
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0

Query: 7  GLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          GL KFL PKLR      +I+AAA W VA +  ALW++QP+D+L+K
Sbjct: 10 GLFKFLRPKLRP--QSTDIQAAAGWGVAAVTGALWVIQPWDFLRK 52

BLAST of CsaV3_5G011100 vs. TrEMBL
Match: tr|A0A0A0KSL8|A0A0A0KSL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223090 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.1e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60
          MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKG 60

Query: 61 ESGVQTNE 69
          ESGVQTNE
Sbjct: 61 ESGVQTNE 68

BLAST of CsaV3_5G011100 vs. TrEMBL
Match: tr|A0A2P6SLT4|A0A2P6SLT4_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0372461 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEE 59
          GE G+ KFL PK R   HP++I+AAALW VA   TALW+VQPF+W+KK  +   E
Sbjct: 3  GEVGMFKFLKPKSRP--HPVDIQAAALWGVAAGTTALWVVQPFNWIKKTFFETPE 55

BLAST of CsaV3_5G011100 vs. TrEMBL
Match: tr|A0A2P6PGN1|A0A2P6PGN1_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0235281 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-08
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEE 59
          G+ G+ KFL PK R   HP++I+AAALW VA   TALW+VQPF+W+KK  +   E
Sbjct: 3  GDVGMFKFLKPKSRP--HPVDIQAAALWGVAAGTTALWVVQPFNWIKKTFFETPE 55

BLAST of CsaV3_5G011100 vs. TrEMBL
Match: tr|A0A2N9EI07|A0A2N9EI07_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6449 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-08
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1   MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
           ++ G  G+ KFL P++R    P++I+AAALW +A   TALWL+QPFDWLKK
Sbjct: 477 IQAGGAGVFKFLKPRIRP--QPVDIQAAALWGIAATTTALWLIQPFDWLKK 525

BLAST of CsaV3_5G011100 vs. TrEMBL
Match: tr|A0A0D2TST9|A0A0D2TST9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G008400 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-08
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 4  GEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKK 52
          GE  + KFL P+LR    PI+I+AAA W VA   TALWL+QPFDWLKK
Sbjct: 3  GEGSMFKFLKPRLRP--QPIDIQAAAAWGVAATTTALWLIQPFDWLKK 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN50751.11.1e-31100.00hypothetical protein Csa_5G223090 [Cucumis sativus][more]
XP_022988689.13.7e-2482.35ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Cucurbita maxima][more]
PRQ59644.12.2e-0856.36hypothetical protein RchiOBHm_Chr1g0372461 [Rosa chinensis][more]
XP_024174637.14.8e-0854.55ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Rosa chinensis] >PRQ21... [more]
KJB78583.18.3e-0862.50hypothetical protein B456_013G008400 [Gossypium raimondii][more]
Match NameE-valueIdentityDescription
AT2G40765.15.0e-0747.92unknown protein[more]
Match NameE-valueIdentityDescription
sp|P48505|UCR11_SOLTU6.9e-0653.33Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0KSL8|A0A0A0KSL8_CUCSA7.1e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223090 PE=4 SV=1[more]
tr|A0A2P6SLT4|A0A2P6SLT4_ROSCH1.4e-0856.36Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0372461 PE=4... [more]
tr|A0A2P6PGN1|A0A2P6PGN1_ROSCH3.2e-0854.55Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0235281 PE=4... [more]
tr|A0A2N9EI07|A0A2N9EI07_FAGSY3.2e-0854.90Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6449 PE=3 SV=1[more]
tr|A0A0D2TST9|A0A0D2TST9_GOSRA5.5e-0862.50Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G008400 PE=4 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G011100.1CsaV3_5G011100.1mRNA


The following gene(s) are paralogous to this gene:

None